RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8413
(796 letters)
>gnl|CDD|149958 pfam09088, MIF4G_like, MIF4G like. Members of this family are
involved in mediating U snRNA export from the nucleus.
They adopt a highly helical structure, wherein the
polypeptide chain forms a right-handed solenoid. At the
tertiary level, the domain is composed of a superhelical
arrangement of successive antiparallel pairs of helices.
Length = 189
Score = 231 bits (592), Expect = 2e-71
Identities = 80/188 (42%), Positives = 105/188 (55%), Gaps = 23/188 (12%)
Query: 310 PGAHSIERFLIEEHLLQIIEMNYFERKDCATQLL-----------------------KYN 346
P A SI FL + L II + F RK+CA +LL
Sbjct: 1 PPASSIAAFLFRDILADIINLLEFNRKECARELLDLDCFFTRKTFAPRGTSVDKLLDPPE 60
Query: 347 MKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRI 406
LE IVE I GELF+LPTP Y I+Y S+LIELCK+ P + VL +A L+ R+
Sbjct: 61 STWKLEDVIVETILGELFQLPTPPYKPIYYHSLLIELCKLAPAAIAPVLGRAIRFLYRRL 120
Query: 407 ESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYH 466
+S++ DRFV WF++HLSNF F+W W +W L+L HP+ FI EV+ K +RLSY+
Sbjct: 121 DSLDLELIDRFVDWFSHHLSNFGFRWKWTEWVPDLELPDLHPRKVFIREVIEKEIRLSYY 180
Query: 467 QRIKEIVP 474
RIKE +P
Sbjct: 181 DRIKETLP 188
>gnl|CDD|220107 pfam09090, MIF4G_like_2, MIF4G like. Members of this family are
involved in mediating U snRNA export from the nucleus.
They adopt a highly helical structure, wherein the
polypeptide chain forms a right-handed solenoid. At the
tertiary level, the domain is composed of a superhelical
arrangement of successive antiparallel pairs of helices.
Length = 250
Score = 195 bits (498), Expect = 3e-57
Identities = 93/277 (33%), Positives = 149/277 (53%), Gaps = 32/277 (11%)
Query: 489 FKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGADPINPLKID 548
FKY E LP A++L++AI+KK+ S EI+ ++ IP D N ID
Sbjct: 1 FKYENES---LPLHEEAKQLLDAIRKKKPS-EEILELIKSIPEI--ASDHGSDFNRFAID 54
Query: 549 VFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVL 608
+F Q LL+LGS+SFSH+ +A+ ++ +VLK +EE Q ++++++FE W + QM ++
Sbjct: 55 LFVQTLLHLGSRSFSHALSAIERYKEVLKTLSAESEEKQQWIIEAVFEYWKNQPQMGFLI 114
Query: 609 IDKMLKTQLLHCSSVANWIFSKEMQPE-FTKLYVWEILHLTIKKMSKYVNRVGKELLDAK 667
+DK+L ++ ++ WIFS+EM T+ VWE L T+ K++ + RV K+L +
Sbjct: 115 LDKLLNYGIISPIAIITWIFSEEMGNLILTRSTVWESLFRTLSKLASRLRRVVKDLKVLE 174
Query: 668 ERLKHVSSESEEESDGEGGKKNEEKISEEVVEKIEEKLEAAQADQKNLFLIIFQRFIMIL 727
E + EE +E +EEKLE A +QK+L I +RFI IL
Sbjct: 175 E---------------------DNSSEEEDLEFVEEKLERAINEQKSLLNTILKRFIEIL 213
Query: 728 SEHL---VRCDTDGVDFNTHW-YKWTIGRLQQVLLAH 760
+ + D D D + W ++W IGRL+ +L +
Sbjct: 214 KDEGEPELEGDEDLPDLDLKWLFRWAIGRLKSILRKY 250
>gnl|CDD|214713 smart00543, MIF4G, Middle domain of eukaryotic initiation factor 4G
(eIF4G). Also occurs in NMD2p and CBP80. The domain is
rich in alpha-helices and may contain multiple
alpha-helical repeats. In eIF4G, this domain binds
eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G
domain homologues (in press).
Length = 200
Score = 107 bits (268), Expect = 2e-26
Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 20/204 (9%)
Query: 45 STTSLESHLDGLAKVLETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFG 104
S ++ ES + L K+ +D R IL ++ + A + P Y L LLNAKN +FG
Sbjct: 12 SPSNFESIIKELLKLNNSDKNL-RKYILELIFEKAVEEPNFIPAYARLCALLNAKNPDFG 70
Query: 105 GEFVELMVKTFK---DALKNCQWNAARYALRFLADLVNCHVISTNSLLQLL-ENMLDASK 160
+E + + F+ ++ + +RFL +L N V+++ +L+LL E + D +K
Sbjct: 71 SLLLERLQEEFEKGLESEEESDKQRRLGLVRFLGELYNFQVLTSKIILELLKELLNDLTK 130
Query: 161 EDGVPNVRKDWYVYAVLSCLPWVGRELY-EKKEQALALLLLNIELYLNKRSKKHVAALQV 219
D R D+ V +LS LP G++L EK + L +L ++ YL K+ K
Sbjct: 131 LDP---PRSDFSVECLLSLLPTCGKDLEREKSPKLLDEILERLQDYLLKKDKTE------ 181
Query: 220 WSSDKPHPQEEYLDCLWAQIVKLR 243
+ ++ L ++ K +
Sbjct: 182 -----LSSRLRFMLELLIELRKNK 200
>gnl|CDD|217253 pfam02854, MIF4G, MIF4G domain. MIF4G is named after Middle domain
of eukaryotic initiation factor 4G (eIF4G). Also occurs
in NMD2p and CBP80. The domain is rich in alpha-helices
and may contain multiple alpha-helical repeats. In
eIF4G, this domain binds eIF4A, eIF3, RNA and DNA.
Length = 198
Score = 80.1 bits (198), Expect = 4e-17
Identities = 40/201 (19%), Positives = 86/201 (42%), Gaps = 20/201 (9%)
Query: 47 TSLESHLDGLAKVLETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGE 106
++ E +D L K+ +D IL ++ + A + P Y L LN+KN +FG
Sbjct: 14 SNFEKIIDELLKLNMSDKNL-LKYILELIFEKAVEEPNFIPAYARLCAGLNSKNPDFGEL 72
Query: 107 FVELMVKTFKDALKNCQ---WNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDG 163
+ + + F+ ++ + +RFL +L N V++ +L+ L+ +L++ E
Sbjct: 73 LLNRLQEEFEKGVEEEERGNRKRRLGLVRFLGELFNFKVLTEKIILECLKELLESLTE-- 130
Query: 164 VPNVRKDWYVYAVLSCLPWVGRELY-EKKEQALALLLLNIELYLNKRSKKHVAALQVWSS 222
+ R ++ + +L L G+ L EK ++ + +L I+ YL
Sbjct: 131 -EDPRDEFSLEILLLLLTTCGKLLDREKLKKLMDEILERIQKYLLSADP----------- 178
Query: 223 DKPHPQEEYLDCLWAQIVKLR 243
+ + ++ ++ K +
Sbjct: 179 -ELSSRLRFMLEDLIELRKNK 198
>gnl|CDD|225502 COG2952, COG2952, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 183
Score = 34.4 bits (79), Expect = 0.12
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 644 ILHLTIKKMSKYVNRVGKELLDAKERLKHVSSESEEESDGEGGKKNEEKISE---EVVEK 700
I H+ K + +++ EL +E LK + E+S K E + E E++E+
Sbjct: 8 IEHIAHKIANDFIHSKLLELKAPRELLKELIIGILEKSV-----KKENALDEQAKELLEE 62
Query: 701 IEEKLEAAQADQKNLFLII 719
+++E + D++ LF ++
Sbjct: 63 NTDEIEFMRMDERQLFWMV 81
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 35.0 bits (80), Expect = 0.23
Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 20/190 (10%)
Query: 491 YNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGADPINPLKIDVF 550
Y GGEHL GF A I I S ++ +L +P S + +
Sbjct: 346 YEFRGGEHLAGFYSAFGDIKRILLFTWSFKKLGTLLPSLPGYS-------SGGMDYGEEY 398
Query: 551 TQVLLYLGSKSFSHSFAALSKFYK--VLKEHIGH-TEESQSY--VLKSLFELWHDHQQMM 605
+L LGS+ + K+ + + + + V + M
Sbjct: 399 RSLLWELGSEVGDPDSGPVRKWMRKDLFDAKVRSGVSFGKQEEFVSDIFNITFERIHGMD 458
Query: 606 AVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVGKELLD 665
++ + ++A + +E F KL + + + +R
Sbjct: 459 PTTLEDDEEDT----PALAILLGQEEA-GRFVKLCKIMRM-FSFFNSLEMFSRRTLANRM 512
Query: 666 AKERLKHVSS 675
A +K++SS
Sbjct: 513 AI--VKYLSS 520
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 34.0 bits (78), Expect = 0.32
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 648 TIKKMSKYVNRVGKELLDAKERLKHVSSESEEESDGEGGKKNEEKISEEVVEKIEEKLEA 707
+KK S+++N L KE K V E EEE E KK EE+ + + E+++E+ E
Sbjct: 11 LVKKHSEFIN-YPIYLWVEKEVEKEVPDEEEEEEKEE--KKEEEEKTTDKEEEVDEEEEK 67
Query: 708 AQADQK 713
+ +K
Sbjct: 68 EEKKKK 73
>gnl|CDD|215822 pfam00257, Dehydrin, Dehydrin.
Length = 137
Score = 32.5 bits (74), Expect = 0.36
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 668 ERLKHVSSESEEESDGEGGKKNEEKISEEVVEKIEEKL 705
R SS S E DG+GG++ + + EKI+EKL
Sbjct: 58 RRSGSSSSSSSSEDDGQGGERK-----KGIKEKIKEKL 90
>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 112
Score = 31.5 bits (72), Expect = 0.46
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 185 RELYEKKEQALALLLLNIELYLNKRSKKH-VAALQVWSSDKPHPQEEYLDCLWAQIVKLR 243
REL E E L L L +++ S +H V V S +P P E DC W + L
Sbjct: 42 RELQE--ETGLQGLDLLYLFHVDGGSTRHHVFVASVPPSAQPKPSNEIADCRWLSLDALG 99
Query: 244 QDN 246
N
Sbjct: 100 DLN 102
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 31.9 bits (73), Expect = 0.78
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 665 DAKERLKHVSSESEEESDGEGG--KKNEEKISEEVVEKIEEKLEAAQ 709
+A+E+ + + +E+EEE + E + EK EE+ EK E++ E +
Sbjct: 5 EAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEK 51
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 32.6 bits (75), Expect = 0.86
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 649 IKKMSKYVNRVGKELLDAKERLKHVSSESEEESDGEGGKKNEEKISEEVVEKIEEKLEAA 708
IKK+ + + +E K++ + EEE + E KK EEK EE + E++ E
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Query: 709 QAD-QKNLF 716
+ Q LF
Sbjct: 472 KKKKQATLF 480
>gnl|CDD|132588 TIGR03549, TIGR03549, YcaO domain protein. This family consists of
remarkably well-conserved proteins from gamma and beta
Proteobacteria, heavily skewed towards organisms of
marine environments. Its gene neighborhood is not
conserved. This family has an OsmC-like N-terminal
domain. It shares a YcaO domain, frequently associated
with ATP-dependent cyclodehydration for peptide
modification. The function is unknown. Fifteen of the
first sixteen members of this family are from
selenouridine-positive genomes, but this correlation may
not be meaningful.
Length = 718
Score = 30.6 bits (69), Expect = 4.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 124 WNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVR 168
W+ AL + D++N H + +L LLE L+ S+ D ++R
Sbjct: 546 WDNTNKALDYREDILNLHRLDDEALEDLLER-LEESQLDNYTDIR 589
>gnl|CDD|132850 cd07211, Pat_PNPLA8, Patatin-like phospholipase domain containing
protein 8. PNPLA8 is a Ca-independent myocardial
phospholipase which maintains mitochondrial integrity.
PNPLA8 is also known as iPLA2-gamma. In humans, it is
predominantly expressed in heart tissue. iPLA2-gamma can
catalyze both phospholipase A1 and A2 reactions (PLA1
and PLA2 respectively). This family includes PNPLA8
(iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus
musculus.
Length = 308
Score = 30.3 bits (69), Expect = 4.1
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 545 LKIDVFTQVLLYLGSKS--FSHSFAALSKFYKVLKEHIGHTE 584
L DVF+Q G+ SH++ + K+LKE +G E
Sbjct: 75 LGKDVFSQNTYISGTSRLVLSHAYYDTETWEKILKEMMGSDE 116
>gnl|CDD|239407 cd03154, TM4SF3_like_LEL, Tetraspanin, extracellular domain or
large extracellular loop (LEL), TM4SF3_like subfamily.
Tetraspanins are trans-membrane proteins with 4
trans-membrane segments. Both the N- and C-termini lie
on the intracellular side of the membrane. This
alignment model spans the extracellular domain between
the 3rd and 4th trans-membrane segment. Tetraspanins are
involved in diverse processes and their various
functions may relate to their ability to act as
molecular facilitators. Tetraspanins associate laterally
with one another and cluster dynamically with numerous
parnter domains in membrane microdomains, forming a
network of multimolecular complexes, the "tetraspanin
web". This subfamily contaions transmembrane 4
superfamily 3 (TM4SF3) or D6.1a and related proteins.
D6.1a associates with alpha6beta4 integrin and supports
cell motility, it has been ascribed a role in tumor
progression and metastasis.
Length = 100
Score = 28.5 bits (64), Expect = 4.7
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 683 GEGGKKNEEKISEEVVEKIEEKLEAAQADQKNL--FLIIFQR 722
G G + KI E+ EK + L + K++ L FQ+
Sbjct: 1 GIVGAVYKPKIENELKEKNTKLLSLLGQNAKSVKKSLEKFQK 42
>gnl|CDD|219733 pfam08163, NUC194, NUC194 domain. This is domain B in the
catalytic subunit of DNA-dependent protein kinases.
Length = 394
Score = 30.1 bits (68), Expect = 4.8
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 608 LIDKMLKTQLLHCSSVANWIF--------SKEMQPEFTKLYVWEILHLTIKKMSKY---- 655
L+D+ L T L HCS F ++ FTK WE IKKM Y
Sbjct: 7 LLDRYLVTLLWHCSLDTLVQFFSRIISDIMDIIKSRFTKSNGWEFESQIIKKMGCYKLIE 66
Query: 656 --VNRVGKELLDAKE 668
+R+ K++L + +
Sbjct: 67 VYYSRLPKDILYSDD 81
>gnl|CDD|221893 pfam13010, pRN1_helical, Primase helical domain. This alpha
helical domain is found in a set of bacterial plasmid
replication proteins. The domain is found to the
C-terminus of the primase/polymerase domain. Mutants of
this domain are defective in template binding,
dinucleotide formation and conformation change prior to
DNA extension.
Length = 135
Score = 29.0 bits (65), Expect = 5.3
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 661 KELLDAKERLKHVSSESEEESDGEGGKKNEEKISEEVVEKIEEKLEAAQADQKNLFLIIF 720
KE D++E + + E + +G K E I EEV +KI++ LE + +K +
Sbjct: 4 KEEEDSEEDFEKLKEEMAKYDRFKG--KTVEAIREEVCKKIKKSLEELKEKKKAILNTAK 61
Query: 721 Q 721
Sbjct: 62 G 62
>gnl|CDD|227132 COG4795, PulJ, Type II secretory pathway, component PulJ
[Intracellular trafficking and secretion].
Length = 194
Score = 29.3 bits (66), Expect = 5.7
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 410 NTAC----FDRFVAWFAYHLSNFQFQWSW-EDWESALKLDLE 446
T C +D+ + +S F Q + W AL L ++
Sbjct: 131 ATDCLGLGWDKLLDPLEDIISAFLVQGLSGKGWSPALPLAVK 172
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 30.0 bits (68), Expect = 5.8
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 643 EILHLTIKKMSKYVNRVGKELLDAKERLKHVSSESEEESDGEGGKKNEEKISEEVVEKIE 702
+ L I + ++++ K+L + K + + +E E K EE++
Sbjct: 159 DDLESLIASAKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLAR------ 212
Query: 703 EKLEAAQADQKNLFLIIFQRFI 724
LE+ +A + + F+R
Sbjct: 213 --LESKEAALEKQLRLEFEREK 232
>gnl|CDD|182123 PRK09866, PRK09866, hypothetical protein; Provisional.
Length = 741
Score = 29.8 bits (67), Expect = 7.5
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 661 KELLDAKERLKHVSSESEE------ESDGEGGKKNEEKISEEVVEKIEEKLEAA------ 708
+E LD + +V+ E E + + N+ ++S E+ +IE L +A
Sbjct: 434 REYLDFRAHGLNVACEQLRQNIHQVEESLQLLQLNQAQVSGEIKHEIELALTSANHFLRQ 493
Query: 709 -QADQKNLFLIIFQRFIMILSEHLVRCDT 736
Q +FQ LSE RC+T
Sbjct: 494 QQDAVNAQLAALFQDDSEPLSEIRTRCET 522
>gnl|CDD|144268 pfam00613, PI3Ka, Phosphoinositide 3-kinase family, accessory
domain (PIK domain). PIK domain is conserved in all PI3
and PI4-kinases. Its role is unclear but it has been
suggested to be involved in substrate presentation.
Length = 185
Score = 28.8 bits (65), Expect = 8.1
Identities = 13/59 (22%), Positives = 23/59 (38%)
Query: 179 CLPWVGRELYEKKEQALALLLLNIELYLNKRSKKHVAALQVWSSDKPHPQEEYLDCLWA 237
L W R +AL LLL+++ + ++ + W+ P E LD +
Sbjct: 31 DLLWKFRYSLMSVPKALTKLLLSVKWSDLDEVAQALSLMLKWAPIDPVDALELLDPNFP 89
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 29.4 bits (66), Expect = 8.5
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 643 EILHLTIKKMSKYVNRVGKELLDAKERLKHVSSESEEESDGEGGKKNEEKISEEVVEKIE 702
E+L + ++SK + + + K ++++EE E KK EE + E EK E
Sbjct: 117 ELLEKELDELSKELQKQLQNTA-EIIEKKRENNKNEERLKFENEKKLEESL-ELEREKFE 174
Query: 703 EKLEAAQADQKNL 715
E+L A D +
Sbjct: 175 EQLHEANLDLEFK 187
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 29.2 bits (66), Expect = 8.9
Identities = 9/53 (16%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 663 LLDAKERLKHVSSESEEESDGEGGKKNEEKISEEV-----VEKIEEKLEAAQA 710
L + +E L ++ E + ++ E + EE+ +E ++K++ +++ +
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEE 53
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 28.7 bits (64), Expect = 9.0
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 643 EILHLTIKKMSKYVNRVGKELLDAKERLKHVSSESEEESDGEGGKKNEEKISEEVVEKIE 702
E L +K S + KE D K+ + E EEE + E + + + EE+VE E
Sbjct: 20 ENLLEHVKITSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEE 79
Query: 703 EKLE 706
E+ E
Sbjct: 80 EEEE 83
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 29.3 bits (66), Expect = 9.6
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 643 EILHLTI-KKMSKYVNRVGKELLDAKERLKHVSSESEEESDGEGGKKNEEKISEEVVEKI 701
E+ L +K+S+ + V KE E L+ SE E+ + EE + +E+I
Sbjct: 162 ELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEI 221
Query: 702 EEKLEAAQADQK 713
+E+ E + +Q+
Sbjct: 222 QEEQEEEELEQE 233
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.415
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,240,635
Number of extensions: 4121065
Number of successful extensions: 4690
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4655
Number of HSP's successfully gapped: 73
Length of query: 796
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 691
Effective length of database: 6,280,432
Effective search space: 4339778512
Effective search space used: 4339778512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.1 bits)