Query psy8415
Match_columns 1561
No_of_seqs 256 out of 515
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 18:13:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1998|consensus 100.0 1E-197 3E-202 1869.0 73.5 1356 1-1460 21-1534(1548)
2 KOG1997|consensus 100.0 2.4E-85 5.2E-90 826.0 38.8 1061 185-1335 32-1500(1518)
3 cd08694 C2_Dock-A C2 domains f 100.0 6.5E-55 1.4E-59 467.1 19.9 193 185-377 2-196 (196)
4 cd08695 C2_Dock-B C2 domains f 100.0 1.1E-54 2.4E-59 465.7 19.2 187 185-377 2-189 (189)
5 cd08697 C2_Dock-D C2 domains f 100.0 1.2E-43 2.7E-48 380.9 17.6 175 185-377 2-185 (185)
6 cd08696 C2_Dock-C C2 domains f 100.0 3.5E-43 7.7E-48 376.0 17.6 172 185-377 2-179 (179)
7 PF14429 DOCK-C2: C2 domain in 100.0 1.5E-42 3.3E-47 377.7 12.7 177 185-377 6-184 (184)
8 cd08679 C2_DOCK180_related C2 100.0 1.4E-40 3E-45 360.3 18.6 173 185-377 2-178 (178)
9 PF06920 Ded_cyto: Dedicator o 100.0 3.9E-33 8.4E-38 302.2 9.4 147 1179-1328 1-178 (178)
10 KOG1998|consensus 99.7 2.1E-20 4.6E-25 243.1 -11.5 1004 286-1462 347-1450(1548)
11 cd08398 C2_PI3K_class_I_alpha 95.1 0.13 2.9E-06 55.7 10.2 68 247-315 53-122 (158)
12 cd08399 C2_PI3K_class_I_gamma 94.8 0.2 4.3E-06 55.3 10.8 70 246-316 56-139 (178)
13 PF00792 PI3K_C2: Phosphoinosi 94.6 0.079 1.7E-06 56.1 7.0 78 239-317 23-103 (142)
14 cd08380 C2_PI3K_like C2 domain 94.1 0.085 1.8E-06 56.7 6.1 69 246-316 55-124 (156)
15 PF14186 Aida_C2: Cytoskeletal 94.1 0.25 5.5E-06 52.6 9.2 108 188-314 15-123 (147)
16 cd08397 C2_PI3K_class_III C2 d 93.8 0.29 6.3E-06 53.1 9.3 93 207-316 31-124 (159)
17 cd08693 C2_PI3K_class_I_beta_d 93.4 0.38 8.2E-06 52.9 9.5 69 246-315 54-136 (173)
18 cd00276 C2B_Synaptotagmin C2 d 92.8 0.52 1.1E-05 48.6 9.1 59 236-297 51-109 (134)
19 cd00275 C2_PLC_like C2 domain 92.5 1.2 2.6E-05 45.5 11.3 67 236-313 42-109 (128)
20 KOG1924|consensus 92.5 0.41 8.9E-06 61.2 9.0 33 962-997 363-395 (1102)
21 KOG1924|consensus 92.1 0.84 1.8E-05 58.6 11.0 18 842-859 246-263 (1102)
22 cd04012 C2A_PI3K_class_II C2 d 92.1 0.46 9.9E-06 52.1 7.9 68 247-316 61-136 (171)
23 cd08408 C2B_Synaptotagmin-14_1 91.4 1.2 2.7E-05 47.0 10.1 59 236-297 53-111 (138)
24 cd08384 C2B_Rabphilin_Doc2 C2 90.8 1.9 4.1E-05 44.7 10.6 59 236-297 50-108 (133)
25 cd00030 C2 C2 domain. The C2 d 90.7 1.7 3.7E-05 40.7 9.5 57 236-297 32-88 (102)
26 smart00239 C2 Protein kinase C 90.2 2.9 6.4E-05 39.5 10.6 58 235-297 34-91 (101)
27 cd04030 C2C_KIAA1228 C2 domain 89.9 0.75 1.6E-05 47.2 6.6 61 235-297 52-113 (127)
28 cd08690 C2_Freud-1 C2 domain f 89.8 0.88 1.9E-05 49.3 7.3 61 235-297 40-106 (155)
29 cd08385 C2A_Synaptotagmin-1-5- 89.6 1.6 3.6E-05 44.6 8.9 58 237-297 52-109 (124)
30 cd04029 C2A_SLP-4_5 C2 domain 89.6 0.94 2E-05 46.9 7.1 60 235-297 52-111 (125)
31 cd08388 C2A_Synaptotagmin-4-11 89.3 2.6 5.6E-05 43.9 10.1 58 237-297 53-111 (128)
32 cd08680 C2_Kibra C2 domain fou 89.1 2.1 4.6E-05 44.5 9.3 59 236-297 52-110 (124)
33 cd08686 C2_ABR C2 domain in th 89.0 1.4 3.1E-05 45.6 7.7 56 235-296 30-91 (118)
34 cd08682 C2_Rab11-FIP_classI C2 89.0 1.8 3.9E-05 44.6 8.6 59 236-297 31-92 (126)
35 cd08390 C2A_Synaptotagmin-15-1 88.9 3.2 6.9E-05 42.3 10.3 58 237-297 51-108 (123)
36 cd08410 C2B_Synaptotagmin-17 C 87.6 1.1 2.4E-05 47.0 6.1 64 231-297 46-109 (135)
37 cd08405 C2B_Synaptotagmin-7 C2 87.5 0.93 2E-05 47.4 5.5 59 236-297 52-110 (136)
38 cd08393 C2A_SLP-1_2 C2 domain 86.8 1.1 2.3E-05 46.5 5.3 59 236-297 53-111 (125)
39 cd08392 C2A_SLP-3 C2 domain fi 86.5 1.5 3.2E-05 45.8 6.3 60 235-297 52-111 (128)
40 cd08382 C2_Smurf-like C2 domai 86.0 1.7 3.7E-05 44.7 6.5 57 236-297 33-89 (123)
41 cd08402 C2B_Synaptotagmin-1 C2 86.0 1.4 3E-05 46.1 5.8 59 236-297 52-110 (136)
42 cd04009 C2B_Munc13-like C2 dom 85.8 5.1 0.00011 41.8 9.9 60 235-297 54-115 (133)
43 cd08404 C2B_Synaptotagmin-4 C2 85.7 1.3 2.8E-05 46.3 5.4 60 235-297 51-110 (136)
44 cd04035 C2A_Rabphilin_Doc2 C2 85.6 2.5 5.4E-05 43.2 7.4 68 236-311 52-120 (123)
45 cd08395 C2C_Munc13 C2 domain t 85.5 3 6.4E-05 43.3 7.8 59 236-297 38-97 (120)
46 cd04026 C2_PKC_alpha_gamma C2 84.2 7 0.00015 40.4 10.0 58 236-297 50-107 (131)
47 cd04031 C2A_RIM1alpha C2 domai 84.2 4.9 0.00011 40.9 8.8 59 236-297 53-112 (125)
48 cd04016 C2_Tollip C2 domain pr 83.9 4.7 0.0001 41.9 8.4 55 236-296 33-88 (121)
49 cd08521 C2A_SLP C2 domain firs 83.1 2.2 4.8E-05 43.4 5.7 59 236-297 52-110 (123)
50 PF00168 C2: C2 domain; Inter 82.8 4.9 0.00011 37.2 7.5 51 236-291 34-84 (85)
51 cd08381 C2B_PI3K_class_II C2 d 82.3 2.3 5E-05 43.8 5.5 60 235-297 48-108 (122)
52 cd04021 C2_E3_ubiquitin_ligase 82.2 13 0.00027 38.5 10.9 53 237-296 35-87 (125)
53 cd08685 C2_RGS-like C2 domain 81.8 2.4 5.2E-05 43.6 5.4 60 235-297 47-106 (119)
54 cd08403 C2B_Synaptotagmin-3-5- 81.3 2.6 5.7E-05 43.9 5.5 59 236-297 51-109 (134)
55 cd04040 C2D_Tricalbin-like C2 80.9 4.6 9.9E-05 40.6 7.0 56 237-297 33-88 (115)
56 cd04044 C2A_Tricalbin-like C2 80.4 4.5 9.8E-05 41.0 6.8 56 236-297 37-92 (124)
57 cd04042 C2A_MCTP_PRT C2 domain 80.2 8.2 0.00018 39.4 8.6 56 236-297 33-88 (121)
58 cd04028 C2B_RIM1alpha C2 domai 80.0 4.6 0.0001 43.3 6.9 59 234-297 65-123 (146)
59 KOG1586|consensus 79.8 9.1 0.0002 44.0 9.2 29 971-999 58-86 (288)
60 cd04038 C2_ArfGAP C2 domain pr 79.7 7.9 0.00017 41.4 8.6 55 237-297 34-88 (145)
61 cd08677 C2A_Synaptotagmin-13 C 79.1 5 0.00011 41.6 6.5 59 236-297 47-105 (118)
62 cd04048 C2A_Copine C2 domain f 78.7 18 0.00039 36.9 10.5 59 235-297 38-99 (120)
63 PF14938 SNAP: Soluble NSF att 78.5 28 0.00061 41.1 13.5 51 948-1000 77-127 (282)
64 cd04020 C2B_SLP_1-2-3-4 C2 dom 78.2 9.8 0.00021 41.4 8.9 60 235-297 63-123 (162)
65 cd08688 C2_KIAA0528-like C2 do 77.9 4.7 0.0001 40.6 5.9 59 236-297 32-91 (110)
66 PF12755 Vac14_Fab1_bd: Vacuol 77.3 14 0.00029 37.1 8.8 55 806-860 3-57 (97)
67 cd04011 C2B_Ferlin C2 domain s 77.3 12 0.00025 37.7 8.6 58 237-297 33-92 (111)
68 cd04051 C2_SRC2_like C2 domain 76.9 7 0.00015 40.0 7.0 57 238-297 35-94 (125)
69 cd04036 C2_cPLA2 C2 domain pre 76.8 5 0.00011 40.9 5.8 55 237-297 36-90 (119)
70 PF14938 SNAP: Soluble NSF att 76.4 19 0.0004 42.6 11.3 125 951-1077 40-168 (282)
71 cd04046 C2_Calpain C2 domain p 76.4 24 0.00051 36.5 10.7 66 237-313 36-101 (126)
72 cd04013 C2_SynGAP_like C2 doma 76.0 11 0.00023 40.6 8.3 59 236-297 39-98 (146)
73 cd04043 C2_Munc13_fungal C2 do 75.9 6 0.00013 40.5 6.2 55 237-296 37-91 (126)
74 cd04010 C2B_RasA3 C2 domain se 75.7 6 0.00013 42.5 6.3 59 236-297 35-106 (148)
75 cd08386 C2A_Synaptotagmin-7 C2 75.0 5.9 0.00013 40.5 5.8 58 237-297 52-110 (125)
76 cd08389 C2A_Synaptotagmin-14_1 74.8 4.3 9.2E-05 42.0 4.8 58 236-297 51-109 (124)
77 cd08409 C2B_Synaptotagmin-15 C 74.8 5.3 0.00012 42.0 5.6 58 235-295 50-107 (137)
78 cd08387 C2A_Synaptotagmin-8 C2 74.7 5.5 0.00012 40.8 5.5 58 237-297 52-109 (124)
79 cd08375 C2_Intersectin C2 doma 74.6 11 0.00025 39.6 8.0 56 237-297 48-103 (136)
80 KOG0212|consensus 74.1 72 0.0016 41.0 15.4 146 813-965 67-245 (675)
81 cd04039 C2_PSD C2 domain prese 73.6 9.7 0.00021 38.5 6.9 57 237-297 38-94 (108)
82 cd04052 C2B_Tricalbin-like C2 73.5 8.2 0.00018 39.0 6.4 55 237-297 26-80 (111)
83 cd08689 C2_fungal_Pkc1p C2 dom 72.4 4.4 9.6E-05 41.2 4.0 44 246-297 42-85 (109)
84 cd08376 C2B_MCTP_PRT C2 domain 72.4 18 0.00038 36.5 8.5 56 237-297 33-88 (116)
85 COG5656 SXM1 Importin, protein 72.2 3.5E+02 0.0075 36.3 21.3 77 647-737 608-686 (970)
86 cd08373 C2A_Ferlin C2 domain f 71.4 9.5 0.00021 39.3 6.4 57 237-296 27-83 (127)
87 cd08406 C2B_Synaptotagmin-12 C 71.4 6.4 0.00014 41.6 5.2 59 236-297 52-110 (136)
88 cd04022 C2A_MCTP_PRT_plant C2 71.3 7.8 0.00017 39.9 5.7 59 237-297 33-92 (127)
89 KOG0212|consensus 70.5 3.3E+02 0.0072 35.4 22.9 54 390-446 187-240 (675)
90 cd08678 C2_C21orf25-like C2 do 69.9 13 0.00029 38.2 7.1 56 236-297 31-86 (126)
91 cd04032 C2_Perforin C2 domain 68.9 9.5 0.00021 40.0 5.7 57 237-297 60-116 (127)
92 cd04041 C2A_fungal C2 domain f 68.9 12 0.00026 37.7 6.4 58 237-297 38-96 (111)
93 cd08681 C2_fungal_Inn1p-like C 68.2 10 0.00022 38.4 5.7 55 237-297 34-89 (118)
94 cd04033 C2_NEDD4_NEDD4L C2 dom 68.0 19 0.00042 37.2 7.8 57 235-297 38-94 (133)
95 cd04014 C2_PKC_epsilon C2 doma 67.9 12 0.00027 38.7 6.4 53 238-297 49-101 (132)
96 cd08377 C2C_MCTP_PRT C2 domain 65.8 14 0.0003 37.4 6.1 54 238-297 35-88 (119)
97 cd04015 C2_plant_PLD C2 domain 65.7 15 0.00033 39.7 6.8 53 238-297 72-124 (158)
98 cd04025 C2B_RasA1_RasA4 C2 dom 64.9 16 0.00035 37.3 6.5 56 237-297 33-88 (123)
99 cd08401 C2A_RasA2_RasA3 C2 dom 64.6 19 0.00041 37.1 6.9 55 237-297 35-89 (121)
100 cd08383 C2A_RasGAP C2 domain ( 64.2 22 0.00048 35.6 7.3 40 237-277 31-70 (117)
101 cd08391 C2A_C2C_Synaptotagmin_ 63.0 16 0.00036 36.8 6.1 56 236-297 39-94 (121)
102 KOG1991|consensus 61.9 6E+02 0.013 35.2 30.8 117 614-752 584-702 (1010)
103 cd04045 C2C_Tricalbin-like C2 61.4 38 0.00083 34.8 8.5 56 236-297 34-89 (120)
104 KOG2171|consensus 59.0 7E+02 0.015 35.1 39.9 49 648-698 264-312 (1075)
105 cd08407 C2B_Synaptotagmin-13 C 59.0 22 0.00048 37.8 6.3 60 234-296 52-111 (138)
106 KOG2956|consensus 58.1 3.2E+02 0.0069 34.9 16.4 150 532-701 322-491 (516)
107 cd04027 C2B_Munc13 C2 domain s 58.1 56 0.0012 33.8 9.1 56 237-297 34-99 (127)
108 cd04050 C2B_Synaptotagmin-like 57.7 20 0.00044 35.6 5.6 54 236-297 32-85 (105)
109 COG5231 VMA13 Vacuolar H+-ATPa 56.4 4.5E+02 0.0098 32.1 19.6 29 834-862 403-431 (432)
110 PF13424 TPR_12: Tetratricopep 54.9 43 0.00094 31.0 7.0 56 1024-1079 6-61 (78)
111 cd08676 C2A_Munc13-like C2 dom 54.2 29 0.00062 37.7 6.3 53 236-297 89-141 (153)
112 PF12717 Cnd1: non-SMC mitotic 52.4 2.4E+02 0.0052 31.1 13.3 152 792-980 2-158 (178)
113 cd08394 C2A_Munc13 C2 domain f 52.0 36 0.00077 35.9 6.4 53 237-297 32-84 (127)
114 PLN03008 Phospholipase D delta 51.9 24 0.00051 47.4 6.2 54 237-297 90-143 (868)
115 PF03378 CAS_CSE1: CAS/CSE pro 51.0 6.3E+02 0.014 32.2 23.9 45 400-447 15-59 (435)
116 cd08691 C2_NEDL1-like C2 domai 50.9 53 0.0011 34.9 7.6 58 236-297 45-103 (137)
117 PF12348 CLASP_N: CLASP N term 49.5 3.1E+02 0.0066 31.0 14.1 78 805-887 110-190 (228)
118 cd08378 C2B_MCTP_PRT_plant C2 49.5 28 0.0006 35.9 5.1 55 237-297 29-83 (121)
119 cd04049 C2_putative_Elicitor-r 49.2 46 0.00099 34.0 6.7 58 237-297 34-93 (124)
120 cd04018 C2C_Ferlin C2 domain t 48.7 44 0.00096 36.1 6.7 73 238-314 48-125 (151)
121 cd04024 C2A_Synaptotagmin-like 46.7 45 0.00098 34.0 6.2 56 237-297 36-91 (128)
122 KOG0905|consensus 45.9 99 0.0022 42.8 10.2 59 1393-1466 122-180 (1639)
123 KOG0566|consensus 45.1 86 0.0019 42.5 9.4 42 410-463 295-339 (1080)
124 KOG1991|consensus 44.8 1.1E+03 0.023 33.0 30.3 65 831-895 463-544 (1010)
125 cd04037 C2E_Ferlin C2 domain f 44.6 65 0.0014 33.2 7.0 55 238-297 36-90 (124)
126 cd08675 C2B_RasGAP C2 domain s 44.0 51 0.0011 34.8 6.2 58 237-297 35-105 (137)
127 cd04017 C2D_Ferlin C2 domain f 43.1 97 0.0021 32.4 8.1 54 237-293 34-94 (135)
128 cd04054 C2A_Rasal1_RasA4 C2 do 42.6 66 0.0014 32.9 6.6 52 238-295 35-86 (121)
129 KOG1785|consensus 38.5 76 0.0016 38.8 6.9 90 1394-1530 470-559 (563)
130 cd08379 C2D_MCTP_PRT_plant C2 37.8 1.3E+02 0.0027 31.7 7.8 56 237-297 36-96 (126)
131 PLN02228 Phosphoinositide phos 36.7 1.3E+02 0.0028 39.3 9.2 69 236-314 474-543 (567)
132 PF04793 Herpes_BBRF1: BRRF1-l 36.3 3.9E+02 0.0086 32.1 12.3 61 567-628 27-89 (284)
133 PF08767 CRM1_C: CRM1 C termin 36.2 8.7E+02 0.019 29.5 25.4 85 677-783 91-177 (319)
134 cd04047 C2B_Copine C2 domain s 35.9 77 0.0017 31.6 5.8 57 235-297 37-97 (110)
135 cd04019 C2C_MCTP_PRT_plant C2 33.4 93 0.002 33.5 6.2 56 237-297 33-89 (150)
136 KOG1586|consensus 31.2 8.4E+02 0.018 28.8 13.3 79 910-1001 49-127 (288)
137 KOG3895|consensus 31.1 1.8E+02 0.0039 35.4 8.4 27 1323-1350 387-413 (488)
138 KOG1030|consensus 31.0 94 0.002 34.3 5.7 39 237-278 39-77 (168)
139 KOG2758|consensus 30.0 1.2E+02 0.0026 36.7 6.6 48 950-997 112-159 (432)
140 KOG1222|consensus 28.4 1.4E+03 0.03 29.5 15.3 27 830-856 345-371 (791)
141 PF12862 Apc5: Anaphase-promot 27.9 5.5E+02 0.012 25.2 10.2 86 976-1075 7-92 (94)
142 PF13174 TPR_6: Tetratricopept 27.7 72 0.0016 24.2 3.1 29 1024-1053 2-30 (33)
143 PLN02952 phosphoinositide phos 27.5 1.2E+02 0.0027 39.8 6.9 68 236-313 513-580 (599)
144 PF02985 HEAT: HEAT repeat; I 27.4 97 0.0021 24.2 3.8 29 831-859 1-29 (31)
145 KOG1920|consensus 27.3 2.1E+03 0.045 31.1 22.8 24 679-702 855-878 (1265)
146 KOG1028|consensus 26.3 2E+02 0.0044 36.3 8.4 57 236-295 202-258 (421)
147 PF03704 BTAD: Bacterial trans 26.2 5.2E+02 0.011 26.9 10.3 74 964-1060 59-132 (146)
148 PLN02222 phosphoinositide phos 25.4 1.5E+02 0.0032 39.0 7.0 69 236-314 495-563 (581)
149 PLN03180 reversibly glycosylat 24.7 3.8E+02 0.0082 32.9 9.6 94 984-1079 238-344 (346)
150 TIGR00756 PPR pentatricopeptid 23.7 93 0.002 23.5 3.1 26 1026-1051 3-28 (35)
151 PF01535 PPR: PPR repeat; Int 23.4 91 0.002 23.2 3.0 26 1026-1051 3-28 (31)
152 PF13176 TPR_7: Tetratricopept 23.4 1.3E+02 0.0028 24.2 3.9 29 1026-1054 2-30 (36)
153 PF13525 YfiO: Outer membrane 23.4 3.2E+02 0.0069 30.7 8.5 75 963-1056 1-75 (203)
154 KOG2003|consensus 23.3 2.4E+02 0.0052 35.4 7.7 101 948-1055 560-692 (840)
155 PF03214 RGP: Reversibly glyco 22.8 4.3E+02 0.0094 32.4 9.6 94 985-1079 240-345 (348)
156 cd08400 C2_Ras_p21A1 C2 domain 22.4 1.9E+02 0.0042 29.8 6.1 54 238-297 36-89 (126)
157 PLN02223 phosphoinositide phos 22.1 1.9E+02 0.0042 37.5 7.0 68 237-314 452-519 (537)
158 PF13432 TPR_16: Tetratricopep 22.0 1.5E+02 0.0033 26.3 4.6 60 971-1052 1-60 (65)
159 KOG4825|consensus 22.0 7.1E+02 0.015 31.6 11.2 55 1274-1328 187-244 (666)
160 KOG0906|consensus 21.9 1.1E+02 0.0024 39.9 4.8 64 247-314 75-139 (843)
161 PF13424 TPR_12: Tetratricopep 21.9 4.7E+02 0.01 24.0 8.1 73 968-1055 6-78 (78)
162 PF08748 DUF1789: Domain of un 21.8 93 0.002 33.0 3.5 33 246-280 9-41 (128)
163 KOG4672|consensus 21.2 1.7E+03 0.037 28.1 14.3 50 1281-1331 78-127 (487)
164 PRK02603 photosystem I assembl 20.4 4.8E+02 0.01 28.2 8.9 89 965-1072 33-121 (172)
No 1
>KOG1998|consensus
Probab=100.00 E-value=1.3e-197 Score=1868.97 Aligned_cols=1356 Identities=46% Similarity=0.766 Sum_probs=1213.1
Q ss_pred CCCCCCcchHHHHHHHHHhhHhHhhhhccCCCCCCCCCCCccceEEEEEeeecccccCCceEEEEEEecCCCCceeccee
Q psy8415 1 MVDPATMSCVQLYQVHLQSSEKTQDISARGTMRKKEPQGKFLTHHLYLCMRDFGHHIGEDTEIYFSLYDGKKSKFLSERF 80 (1561)
Q Consensus 1 ~~dp~~~s~~~l~~~h~~a~~~i~~~~~~~~~~~~~~~~~~~~hhL~v~~k~f~~~~gE~~el~~sLYd~~e~k~iSE~f 80 (1561)
|+||+.+|++.+|.+|+.++.|+.+.-..++.+.. +....+|+|++..++|+|.+|+++|+.|++||++..+.++|+|
T Consensus 21 il~~~~~~~~~~~~a~~~s~~r~~~~~~~~~~~~~--~~~~~t~~l~~~~~~~~c~~~~~~~v~~~~~d~~~s~~~~~~~ 98 (1548)
T KOG1998|consen 21 ILDPEATSSLRLYIAHESSTDRVNELIAEETSRNQ--IRDIPTLELYVVSRNFVCKIGEDAEVPMSLYDPESSTNISENF 98 (1548)
T ss_pred ccchhhhhhhhhhhccccccCCccchhhccccccc--ccccccceeEEEEEeccccCCCCCceEEEEecCccccccccee
Confidence 78999999999999999998877553333344433 6778899999999999999999999999999999999999999
Q ss_pred eEeeCCCCCcchhhhcCCceeEEecCCcccCCCCceEEEEEEEeecccccccccccccccccCCCCCCCCCCccccceEE
Q psy8415 81 LVKISKEGFSNYVEKLNSNRTIFTDLGTADLNKDIHVVAHIFRMGRMLYSESTKKLTASLTHSSLAPSGGVVAFKRPYGV 160 (1561)
Q Consensus 81 ~v~~~~~g~p~~~~~~~~~~tlFtDL~~~Dl~~~lyLV~~v~R~G~m~~~~~~~~~~~s~~~~~~~~~~~~~~~RRpfG~ 160 (1561)
++.|.+.|.+....+.++.++.||||+..|+..++++||.|+|+|.|+..... .++ .+. +. |||||
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~l~~i~~~~~~~~~~~~--~~~-------~~~-~~---~r~~~- 164 (1548)
T KOG1998|consen 99 LVRSGSVGLPDLIERLHNLDPVFTDLGIKDLNTKIELVCQIVRVGRMESADDE--TKK-------MTF-GL---RRPFG- 164 (1548)
T ss_pred eeeecccCCchHHHHHhhcCcccccchHHhhhhhhhhhhhhhhhhhhhhhhhh--hhh-------hcc-CC---ccCCC-
Confidence 99999999999999999999999999999999669999999999999864321 111 232 22 99999
Q ss_pred EEeecccccCCCC-Ccccccccce---------------------------------e----------------------
Q psy8415 161 AVLEIGDMMATPG-SEEREFMFKV---------------------------------K---------------------- 184 (1561)
Q Consensus 161 avl~l~~i~~~~~-~~e~e~~~~~---------------------------------K---------------------- 184 (1561)
+||++++++.+.. +++++|++++ |
T Consensus 165 ~v~~~~~i~~~~~~~e~~~~~~~~~~~e~~~~~l~~~~~~~~~k~~~~~~~~l~vs~kll~G~~~q~r~~~p~l~~rs~i 244 (1548)
T KOG1998|consen 165 AVMDVTDIIEGKAIDEIEQHFILFQEVESENDFLPFLISKVIAKKGLNAGQGLWVSLKLLPGDIVQIRAERPHLFDRSAV 244 (1548)
T ss_pred ceeeeeehhhcccchhhhhhheecccccCcccccchhhhccccCcccCCccceEEEEEEecCchHHHhhhcCchhhhhHH
Confidence 9999999887754 5555666544 0
Q ss_pred --------------cceeeEEeecccccCCCCCCCCceEEEEEEEcCCCccccCceeccCCCCCcceEEEEEEEecCCCc
Q psy8415 185 --------------RNDLYLILERGEFEKGGKSTGKNIEVTVQVLDSDGTVLQNCLWGASGSDTSSEYHSMIIYHHNSPC 250 (1561)
Q Consensus 185 --------------RNdLYVtl~~g~F~~~~k~~arNIeV~vevr~~dg~~i~~~I~~~sg~~~~s~~~S~V~yHn~~P~ 250 (1561)
||||||||.+|+|++|+|.++|||+|+|.|.+.+|+...+|+++++|.+..++|+|.|+||.+.|.
T Consensus 245 trk~gFp~vimgDvRNdlyitL~~gdf~~ggK~t~kNi~vtV~V~ev~G~~l~d~~~~~sG~~~i~~y~s~v~yh~~~p~ 324 (1548)
T KOG1998|consen 245 ARKQGFPEIIMGDVRNDIYITLIQGDFSKGGKTTFINVEVTVSVLEVDGKQLFDKTESGSGEPYIPEYHSVVLYHQKAPR 324 (1548)
T ss_pred HhhcCCchhhccccccceeeeeeehhhhccccccceeEEEEEEEeecccceehhheeccCCCcccceeeeeeeeccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEeeccccccCcEEEEEEeeccccccccC-CcceEEEEeeccCCCCceecCCceEEEEEeecccCCCCCCccccC
Q psy8415 251 WSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADN-KKLLGFSFARLMEPSGATLQDCQHELFIYRCEERSKLDPGHYLGL 329 (1561)
Q Consensus 251 w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~-~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk~d~~~~~~p~~YL~l 329 (1561)
|+|++|+.||.+.+...|++|.|||||++++.+. +++||++++.||+++|+++.||.|.|.|||+|.++..+..+|+.+
T Consensus 325 w~E~~kv~lp~~~~~~~~lR~~frf~ss~dk~~~~~k~f~~~~v~lmrd~G~~l~dg~h~L~v~k~d~~~~~d~~n~~~~ 404 (1548)
T KOG1998|consen 325 WTETIKVALPIDDFLDSHLRFLFRHCSTKDKTDKEKKLFAFAFVKLMRDDGTTLEDGIHDLRVYKCDNPSLEDASNYLKL 404 (1548)
T ss_pred hhhceeeeccchhhhhhhhHHHHHhhccccccCccCCceeeeEEEEeccCCccccCCceeEEEEecccchhhhhhhhhhc
Confidence 9999999999999999999999999999988742 699999999999999999999999999999999877888999998
Q ss_pred Ccchh---hhccCCCCCCCCCCCccccccCCceEEEEEEEeeccccchhhHHHhhcccCChhHHHHHHHHhhcCcchhhh
Q psy8415 330 ASTVQ---EAQAGTVPIPYKTDSAHYACSHKESVFIRTLLCSTKLTQNVEILNLLKWREHPEKIQEALNQALCLEGQELV 406 (1561)
Q Consensus 330 p~~~~---~~~~~~~~~p~~~~~~~~~~~~k~~f~I~T~lcST~~TQd~~Ll~LL~W~~~p~~L~~~L~~l~~v~~~eiV 406 (1561)
++... .+... ....+.+...+....|++|.++|.+|||++|||.+++++|+|++.++.+..+|.++..++++|||
T Consensus 405 ~~~e~~~~~k~~~--~q~~s~~s~~~s~s~ke~~~ist~~~st~ltqN~dlL~ll~wr~~~e~~~~~L~ql~~v~~eev~ 482 (1548)
T KOG1998|consen 405 PSMEASLYDKGMD--AQRKSPSSGGFSRSSKEFFFISTLLCSTKLTQNVDLLGLLKWRMLPELLQDSLMQLANVSGEELV 482 (1548)
T ss_pred ccchHHHHhcccc--ccccCccccceeeeccccceeeehhhcccccccHHHHHHHHHHhhHHHHHHHHHHhcCCChHHHH
Confidence 87321 11110 01111134466678999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHhhccc-----------------------hhHHHHHHhhccCC
Q psy8415 407 KFLQDILDALFSMFSTEDGNSTMHSGLVFHVLTHIFSLLYDSK-----------------------GLITSIQHCADYVS 463 (1561)
Q Consensus 407 KFL~~IlDaLF~IL~~~~~~s~~~~~lVF~aLV~Ii~lv~d~r-----------------------~Ll~s~~~y~~~~~ 463 (1561)
|||++|||+||.++ .+.++++.++.+||+++|.|++++++.+ ++++++.+|+....
T Consensus 483 k~l~~iL~~L~~~~-~~~~~s~~~~~lVfd~lv~i~~l~~~~kf~~~rp~~~~~~~k~fs~~l~~~~l~~~l~~~~~~~~ 561 (1548)
T KOG1998|consen 483 KFLQDILDALFVLL-EEESQSETYDELVFDVLVSILSLLADRKFQHFRPVMNTYIKKHFSATLAYKKLTKVLKVHMDTSI 561 (1548)
T ss_pred HHHHHHHHHHHHhc-ccccchhhccchhHHHHHHHHHHHHhhcccccccccHHHHHhHHHHHHHHhhhHHHHHhhhcccc
Confidence 99999999999999 6555789999999999999999999988 88999999998888
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHHhccccc--hhHHHHHHHHhhHHHH
Q psy8415 464 STEKQEPIQKCFRSLEYVFKFIIESRLLFSRATGGQYEEGFQRDLFAVFNALNSMLSVSYDI--ILDTQVTFKSGWVTLN 541 (1561)
Q Consensus 464 ~~~~~~~L~~~lK~~~yiFkfIvkSr~l~~~~~~~~~~~~F~~~l~~lf~si~~lm~~~~~~--li~~Qt~al~~~a~~l 541 (1561)
+.+.+++.+.++++++++|+|||.||.++...+++..+++|..+.+.+|.+++.+|...+.. ++..|.++++++|++.
T Consensus 562 ~~~~~~~~r~~~~~~~~ifkiiV~S~~~~~~~~e~~~~~~f~~~~~~lft~~~~~l~~~~~n~~ii~~qea~l~~~~~i~ 641 (1548)
T KOG1998|consen 562 SREHNEEIREAFKVLEYIFKIIVLSRKLFSRATEPSEEEEFRRQLKSLFTKILGGLASQSKNKEIIRVQEAALKSIPTID 641 (1548)
T ss_pred cccccHHHHHHHHhhhhceEEEEeecccccchhccchhHHHHHHHhhhhhhcchhhhhhhhcccccchHHHHHhhcchhh
Confidence 88889999999999999999999999999999999999999999999999999987776633 5999999999999999
Q ss_pred HhhhhH-----HHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHhcchhhHH-
Q psy8415 542 RDYQLI-----LEVAKFASDMLECLGKREAQPLLTKAKLECIKNLVSGKLFSEDESRSYLLARICKHLRLHLAHRDELK- 615 (1561)
Q Consensus 542 ~dL~~v-----~ev~~li~~fi~s~~~~~~~~~L~~~KL~~i~~iv~~~Lf~~~e~R~~Llp~~~~~l~~hl~~~~~~~- 615 (1561)
.++..+ .++...+.+|+.+++ ...+.+.||.|+..+|++.||...+||.+|+|.++.+|..|+.+.++..
T Consensus 642 ~~~~~~~~~~~~el~~~i~~~~~~v~----~~~~~~~kl~~~~kiV~~~lf~~s~~R~~ll~~~~~~l~~~l~r~~~~~~ 717 (1548)
T KOG1998|consen 642 HDLLDELLFDPKELSLLILEFILNVP----EKFLTQQKLNCLKKLVDSRLFSSSDCREQLLPVITKHLKNHLPRVDELSA 717 (1548)
T ss_pred hhhhhhcchhhHHHHHHHHHHhhccc----hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccCcchhhhhc
Confidence 988855 777778999999987 7789999999999999999999999999999999999999997766544
Q ss_pred ------HHHHHHHHHHHhhhhcccccccCCcccccchHHHHHHHHHHhHHHHHHHHhhcCCCChhhhhHHHHHHHHHHhc
Q psy8415 616 ------LCTEILSEILSFLYKKKRTCEVGGKVNNILHHDLELLCLSTLDMLIQTVLIIIDRATPVLGSLVACLIGLLQLL 689 (1561)
Q Consensus 616 ------lc~~iL~~iL~~L~~~~~~~~~~~~~~~~~~~~v~~l~~~lL~~l~~t~~~l~~~~~~~~~~l~acll~il~~m 689 (1561)
.|+.++..+++.+....... ....+..++..+++++.++++.+.+...-..-++++|++++++.|
T Consensus 718 ~as~~~~~~~~i~~i~~~~~~~~~~~---------~~~~l~~l~~~~l~~~~~~~~~~~r~~~~~~~~lvsc~la~l~~m 788 (1548)
T KOG1998|consen 718 PASVSPECTVLISSILEVLFEKVNRY---------LQSLLDSLCSALLRIVRRTVISMGRVSNLILSHFVSCLLALLNQM 788 (1548)
T ss_pred hhhccccchhhhhhhHHHHHHHHhhh---------hhhhHHHHHHHHHHHHhHHHHhhhhHhhccchhhHHHhhhhhhhh
Confidence 48888888888887764333 677888999999999999988886642111128999999999999
Q ss_pred CHHHHHHHHHHhCCcchHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhHHHHHHHHHhhHHHHhhcCCCCCchhHHHH
Q psy8415 690 DESHYKKLWEELGDKKPLKDFLLRAFLVLRDLVKQDVFPPDWLVMRMVTNQVILTALGHLAPPLIYWFLDSRGAFAYQVW 769 (1561)
Q Consensus 690 ~~~~~~~~~~~~~~~~dl~~fL~~~~~~~~~ll~~~~fP~~Wl~m~~~~~~v~L~~L~~ls~~l~~~f~~~~~~Fd~~LW 769 (1561)
++.||++||+.+.++.++++||++.+.+++.++.+.+||++|+.|+++++.+++.++..++..+...|+. ...||.++|
T Consensus 789 s~~~ys~~~e~~k~~~~~~efl~e~~~m~~~L~~k~v~P~~wm~m~~l~n~v~l~~l~~~~~~~~~~~ls-~~~f~~qlw 867 (1548)
T KOG1998|consen 789 SDQHYSHYIEEFKSDTDLKDFLMETFIMFRDLLGKNVFPSDWMVMNMLQNKVLLRSLNQYAKSANQKFLS-STSFDFQLW 867 (1548)
T ss_pred hhhhHHHHHHhhcChHHHHHHHHhHHHHHHHHccCcCCchHHHHHHHhhhHHHHHHHHHHHHhhccccCC-cccccHHHH
Confidence 9999999999998889999999999999999999999999999999999999999999999999888886 567999999
Q ss_pred HHHHHHHHHHhCCCccccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccccccccccchHHHHHHcCCCchHHHHH
Q psy8415 770 SNYFNLAVSFLTQPSLQLEKFSDVKREKIIEKYGDMRVQMGFQILKVWSSLGEHKINFIPSMVGPFLEVTLVPENELRKA 849 (1561)
Q Consensus 770 ~~~f~~ll~~l~q~~L~LE~~~~~kR~ai~~~~gD~R~~~a~ll~~~W~~Lg~~q~~fip~Lv~~iLe~cls~~~~lR~~ 849 (1561)
++||+++++|++|+++|||++...||++|..+|||||+.+|+.+++||+.+|+++.+|+|.+||++|++++.+.+++|++
T Consensus 868 ~~yf~lvvsFltq~sl~L~~~~~~~r~~i~~~ygdmr~~~a~~l~smw~~l~~~k~~~iP~mvg~~levtlv~~~e~R~a 947 (1548)
T KOG1998|consen 868 NEYFSLAVAFLTQPSLQLEQFSIAKRKKILDKYGDMRKLMAFELRSMWSLLGQHKIHFIPSMVGPFLEVTLVPEPELRKA 947 (1548)
T ss_pred HhhhheeeEeecChHhhhchhhcccchhhhhhhhHHHHHHHhhhHHHHhhccccceeecccccCCccceeccCchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhhcCCChhHHHhHHhHHHHHHHHHHHH
Q psy8415 850 TLNIFFDMMECEQRVHGNFKQVESELIDKLDILISDNKGDDEYRQLFNTILLDRVQNEDPQWKETGSAFISSVTRLLERL 929 (1561)
Q Consensus 850 a~~il~~mm~~E~~~~~~f~~ve~eiI~~Ld~Lv~~g~gd~~~r~~f~~iL~~~~~~~~~~l~~~~~~F~~~V~~ll~~L 929 (1561)
.+++|++||+||+...++|..+++++|++||+++.+|+|++.|+++|..++.+.+..+.+-++..+..|+..|.++|++|
T Consensus 948 ~i~iF~dmm~~E~r~~gsf~~~~seli~kLds~v~egk~~~~~~el~~~i~~~~~~~~~~l~k~~~~~fv~~vl~~L~~~ 1027 (1548)
T KOG1998|consen 948 TIPIFFDMMQCERRRSGSFQHFESELISKLDSLVSEGKGDESYKELFRAILLEFGPRHKPLAKTVGEAFVRSVLRLLERL 1027 (1548)
T ss_pred ccccchHHHhhhhhhcCCchhhhhHhhhchhccccccccchhhhhhhhHhhhhccccCChhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888887556666667999999999999
Q ss_pred hhccccccCCCCcccchhHHHhHHHHHHhhcCChhHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHcCccCCCCCCCCC
Q psy8415 930 LDYRSVIQGDENRDKRMSCTVNLLNFYKNEINRKEMYLRYIYKLHDLHRPADNFTEAGFTLKLYADSLSWTSSAPLINDP 1009 (1561)
Q Consensus 930 l~~r~v~~~~E~~d~rm~~tl~Ll~fyk~~~~r~emyiryv~~La~lH~~~~Ny~EAAl~L~lhA~ll~W~~~~~l~~~~ 1009 (1561)
++||.+|.++|.+++++ ||++||+||+ +++++|||++|+|+|+++|.+++||+|||+||++||.+|+|++ +.++ ..
T Consensus 1028 ~d~~~~~~~E~~d~~~~-~tv~L~~~y~-e~nr~Emy~ryiykL~dlh~q~~n~~eAa~tL~l~a~~L~wd~-~~~~-~~ 1103 (1548)
T KOG1998|consen 1028 LDYRSIMNGEEKDNKMS-CTVNLLNFYK-EINREEMYIRYIYKLCDLHLQAENYTEAAFTLLLHAGLLKWDD-DDLL-IQ 1103 (1548)
T ss_pred HHHhhccchhhhhhhhH-HHHHHHHhcc-hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcCC-chhc-cc
Confidence 99999999666665555 9999999999 9999999999999999999999999999999999999999998 5665 44
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhhccCCCCceeE
Q psy8415 1010 MCQPNGAPEWYRKEQLYYEIISYFDKGKCWEKGIPLCKELADLYEKRLFDYKKLSNILQTQAQFCDNILNQLRPEPEYFR 1089 (1561)
Q Consensus 1010 ~~~~p~qt~~erKE~L~~~~i~~f~kg~~wE~ai~l~keL~~~YE~~~~Dy~kLs~i~~~~a~lY~~I~~~~R~~~~YFR 1089 (1561)
.+.++.|++|+|||.||++++.||+||++||+||.+||+|+++||++++||.+||.+|.++|++|++|++..|+.|+|||
T Consensus 1104 ~~~~~~q~~~q~KE~L~~e~~~~F~kGk~wE~ai~l~keL~~~Yen~~~Dy~~Ls~~~~~~A~~y~~i~~~~R~~p~yf~ 1183 (1548)
T KOG1998|consen 1104 FLPYPEQTHRQRKEYLYEEIIHYFDKGKMWEKAIALCKELAEQYENIIFDYNKLSELLIQIAQFYTNIMKILRPEPEYFR 1183 (1548)
T ss_pred CCCCcccccHHHHHHHHHHhhhccccccChhhhchHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHHHHhhcccccEEE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCeeEEEccCCccCHHHHHHHHHhhCCCcEEcCCCCCCCCCccCCCccEEEEEEeeecCCCCCCCCCC
Q psy8415 1090 VGFYGLSFPLFVRNKVFVYRGLAYERMEAFTQRLQTEFPSANILSKNSPPSHTIQQSDVQYIQICNVKPLPERGPPCINP 1169 (1561)
Q Consensus 1090 V~FyG~gFp~~lrnKeFIYrg~~~erL~~f~~RL~~~yp~a~ii~~~~~~d~~~l~~~~qYIQIt~V~P~~d~~~~~~~~ 1169 (1561)
|||||+|||.++|||.|||||.+||++++|.+||+++|| |+++...++|+..++++.+|||||.+|+|..+.....
T Consensus 1184 V~fyG~gfP~~lrnk~fv~rg~~~E~~~~f~~rl~~e~~-a~~~~~~~~p~~~i~nsp~qyi~~~~V~p~~~~~~~~--- 1259 (1548)
T KOG1998|consen 1184 VGFYGQGFPKFLRNKVFVYRGLEYERIEAFQQRLLTEFP-AEIMHTTSPPDDAILNSPGQYIQVFSVEPVLDISPNF--- 1259 (1548)
T ss_pred EeccccCcchhhcCceEEEeCchHHHHHHHHHHHHHhCc-hhhhcCCCCCcccccCCCcceeEEeeeccccccchhh---
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999987221
Q ss_pred CCCCCCccccceeeecCcceEEEeeeecCCCCCCCcccccceEEEEEEEecCCCCccceeEEEeeeeEE--------ec-
Q psy8415 1170 PLAPVPDKIAQYYQVNDVRTFQLDRPMHKGPIDKDNEFKSLWLERTIMTISSPLPGILRWFEVVESNVD--------LE- 1240 (1561)
Q Consensus 1170 ~~~~v~~~i~~y~~~~nv~~F~~~~Pf~k~~~~~~~e~~~~w~erTiltT~~~FP~ilrR~eVv~~~~~--------IE- 1240 (1561)
++.+|++.+..||+.+||++|.|++| ++..+++++|+++|++||+++|+++||+++||+||++.... ||
T Consensus 1260 ~~~~v~~~i~~~~~~~~vqrf~y~~~--~~~~~~~~ef~s~wier~~~~ta~~lp~~lr~~ev~~~~~~~~splenaie~ 1337 (1548)
T KOG1998|consen 1260 NNDPVSEQINKFYRYNEVQRFEYSRP--KGTVDPDNEFASLWIERTIYHTAYKLPGILRWFEVVKVTMSELSPLENAIET 1337 (1548)
T ss_pred cCCccchHHHhhhheeeeeeEEEecc--ccccCcccchhhcceeeeeeeccccCcchhhhhhhheeeeeecchhhhhhhh
Confidence 13799999999999999999999999 78888999999999999999999999999999999998855 33
Q ss_pred -----------------------CC---CccccccccccchHHHHHHhhcCcccccCCCCChHHHHHHHHHHHHHHHHHH
Q psy8415 1241 -----------------------NP---GLQGTIDANVMGGIAKYQQAFFTPEFARGYPQYIPYINRLHILILEQVDVLE 1294 (1561)
Q Consensus 1241 -----------------------np---~LqG~Vda~VNgG~~~Y~~aFl~~~~~~~~P~~~~~v~~Lk~~~~~~v~vl~ 1294 (1561)
|| .|+|+|||+||||+.+|.++||+..+...+ .+.+.+|+.+|.+|+.+++
T Consensus 1338 m~~~~~el~~~~~~~~~d~~~~~~~lS~~~~g~v~a~vmgg~~~y~~~f~~~~~~~~~---~~~~~~l~~li~eqi~~l~ 1414 (1548)
T KOG1998|consen 1338 MQVKNKELNEMILQYHSDPNLPINPLSMLLNGTVDAAVMGGISNYEKAFFTETYLQFH---QDKLGRLKDLIAEQIPILG 1414 (1548)
T ss_pred hhhhHHHHHHHHHHhccCCCccccccccccCCcccccccccHHHHHHHhhhhhhhhcc---cchHHHHHHHHHhhhhhhh
Confidence 33 999999999999999999999999987665 5589999999999999999
Q ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHHHhccCCCCccccCCCCCCCCCcccCCCCCCCccCcccccCCCCCCC-----
Q psy8415 1295 NGLVVHGQLAPPGVQPLHKRLQERFAGLRQSIRKPPTESIIHSPLPPVPDQYINAGYHPVEEGEDIYSRPGDLDL----- 1369 (1561)
Q Consensus 1295 ~~L~lH~~li~~~~~~~H~~Le~~F~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 1369 (1561)
.|+.+|+.++|...+|+|+.|+++|.+++.++++. .+++.++ ...+.++.||.+..=
T Consensus 1415 ~~~~~h~~~~p~~~~p~h~~l~~~f~~~~~~~~~~---~~~~~~~---------------~~~~~~~~r~~~~~~~~~~~ 1476 (1548)
T KOG1998|consen 1415 RCLTLHAELVPSKLRPFHDRLEECFKQLKAKVEEE---YGVTLSP---------------SRDDRITARPRSMVRPNGRM 1476 (1548)
T ss_pred hhhhhhhhhCCCCCCCchhhhHHHHHhhHHHHHHh---hccccCc---------------ccCCccccccccccCCCCcc
Confidence 99999999999999999999999999999977654 4444444 333566666665522
Q ss_pred -------CCCCCCCCCCCCCCCCCCcCCCCCCCCCCCcCcCCCCCccccccccCCCCCccccccccccccccCCCCCCCC
Q psy8415 1370 -------GEGDGEAPCLPQRPRSAGYGTLPPADKPKPAHQRLPSKSSVHKRQSSDSGFSSCTAHMRNSWSETYEEAPPLP 1442 (1561)
Q Consensus 1370 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1442 (1561)
.+.| ++|+.|.+|++-.. .+|+ ++|| +.|||++
T Consensus 1477 s~~s~s~~~~~-~~~~~~~~~~~~~~------g~p~-------------------------~~~s--------~~~~~~~ 1516 (1548)
T KOG1998|consen 1477 SHTSGSSHSSD-ATPSDPFSPFSLEP------GKPK-------------------------TLHS--------RSAPSLD 1516 (1548)
T ss_pred chhhhhccccc-CCCCCCCCCcccCC------CCCC-------------------------cccC--------ccCCCCC
Confidence 2444 88888888866522 2222 1222 3789999
Q ss_pred CCCCCCCCCCCCCCCCCc
Q psy8415 1443 PRGFTPDKRSSGEPPSLH 1460 (1561)
Q Consensus 1443 ~~~~~~~~~~~~~~~~~~ 1460 (1561)
|++..|+++..--|++.|
T Consensus 1517 ~~~~~~~~~~~~~p~~~~ 1534 (1548)
T KOG1998|consen 1517 KSGIVPEKSLTKRPGSQP 1534 (1548)
T ss_pred CCCccccccccccCCCCC
Confidence 999999998775444443
No 2
>KOG1997|consensus
Probab=100.00 E-value=2.4e-85 Score=826.05 Aligned_cols=1061 Identities=18% Similarity=0.192 Sum_probs=747.6
Q ss_pred cceeeEEeecccccCCCCCCCCceEEEEEEEcCCCccc---cCceecc-CCCCCcceEEEEEEEecCCCccceeEEEeec
Q psy8415 185 RNDLYLILERGEFEKGGKSTGKNIEVTVQVLDSDGTVL---QNCLWGA-SGSDTSSEYHSMIIYHHNSPCWSEIIRLAVP 260 (1561)
Q Consensus 185 RNdLYVtl~~g~F~~~~k~~arNIeV~vevr~~dg~~i---~~~I~~~-sg~~~~s~~~S~V~yHn~~P~w~EeIKi~LP 260 (1561)
||-||+++-..+|.. +...++||.+.. .+..|+.. ...+++. +++....+-.|.|.||+++|.++++.++.+|
T Consensus 32 R~~Ld~q~~~lqf~~-~~n~a~ni~~~~--~~~~~e~~~~~~~v~~~~st~~~~lq~~~t~v~~~d~S~~~~~s~l~~ld 108 (1518)
T KOG1997|consen 32 RNLLDVQPACLQFQI-LVNSAENILTRD--QTMPVEDAGIRRPVIFGKSTLREFLQEPPTTVNYHDKSIEFYESRLLSLD 108 (1518)
T ss_pred hhHHhhhhHHHHHHH-Hhhhhhhhhhhh--hhchhhhhccchhhhHHHhhhHHHhccCCcccccccccHHHHhhhhhcCC
Confidence 999999999999875 356789999887 33333222 2456654 6677777888999999999999999999999
Q ss_pred cccccCcEEEEEEeeccccccccC--CcceEEEEeeccCCCCceecCCceEEEEEeecccCCCCCCccccCCcchhhhcc
Q psy8415 261 IERYQSSHIRLEYRHCSTRDKADN--KKLLGFSFARLMEPSGATLQDCQHELFIYRCEERSKLDPGHYLGLASTVQEAQA 338 (1561)
Q Consensus 261 ~~~~~~~HLlFtFrH~S~~~k~~~--~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk~d~~~~~~p~~YL~lp~~~~~~~~ 338 (1561)
++...++|+.|+|||.+|++.+++ ++|.|+.|+|+...+. ++-|..+++++- .+.++.|.-.-...
T Consensus 109 a~sl~nlh~~fv~yl~~sq~~~~~~~et~~~n~~~~~~i~~e--l~~q~~~~k~~l-----fn~k~~ys~mi~~~----- 176 (1518)
T KOG1997|consen 109 AKSLAKLHLLFVFYLTSSQQHPGAIAETPKPNLWLLLLIRHE--LSLQSDNLKVKL-----FNCKDRYSKMIIPV----- 176 (1518)
T ss_pred chHHHHHHHHHHhhccccccchhhhhhcccccccchhhHHHH--hhhcccCCCccc-----cCCChhhhhhcccc-----
Confidence 999999999999999999998864 6999999999996422 334445555433 12445554321111
Q ss_pred CCCCCCCCCCCccccccCCceEEEEEEEeeccccchhhHHHhhcccC------Chh--------------HHHHHHHHhh
Q psy8415 339 GTVPIPYKTDSAHYACSHKESVFIRTLLCSTKLTQNVEILNLLKWRE------HPE--------------KIQEALNQAL 398 (1561)
Q Consensus 339 ~~~~~p~~~~~~~~~~~~k~~f~I~T~lcST~~TQd~~Ll~LL~W~~------~p~--------------~L~~~L~~l~ 398 (1561)
+.+ ..+|. |+.|.+.....|++++||+++..++-... .|. ++.-+..+..
T Consensus 177 ---~~~----~~~~~---r~~f~~~~~~l~sV~~~D~~~sk~f~~~~~~~~~a~p~~ll~~~~se~~d~~e~~lS~~~~~ 246 (1518)
T KOG1997|consen 177 ---YNS----VGTWA---RGPFNPELIPLSSVHPQDPYLSKFFTALHSLEQNAFPHRLLTNLLSELPDANELRLSFARTR 246 (1518)
T ss_pred ---ccc----cccee---ccccccccccceecCcCCcccCcceeeeeeccCccchhhhhhhhhhhhccccccccchhhhh
Confidence 112 34677 89999999999999999999998885321 121 1222333444
Q ss_pred cCcchhhhhccHHHHHHHHHhhcc---cCCCcccchhhHHHHHHHHHHHhhccc----------hhHHHHHHhhc-----
Q psy8415 399 CLEGQELVKFLQDILDALFSMFST---EDGNSTMHSGLVFHVLTHIFSLLYDSK----------GLITSIQHCAD----- 460 (1561)
Q Consensus 399 ~v~~~eiVKFL~~IlDaLF~IL~~---~~~~s~~~~~lVF~aLV~Ii~lv~d~r----------~Ll~s~~~y~~----- 460 (1561)
..-.|..++|++..+++++..... ..+.....+.+.|.+-..++.++|..+ +....+.+|..
T Consensus 247 ~g~pEr~~~f~~~~lfav~~l~~~pv~Ia~~e~~l~~n~t~~~e~lik~~h~sK~as~n~k~~~c~~s~ig~Y~~plaw~ 326 (1518)
T KOG1997|consen 247 EGIPERLLKFLHQDLFAVVHLHFRPVLIAGIEAVLQGNITESDEPLIKLSHNSKAASSNLKGSKCTESPIGHYRMPLAWA 326 (1518)
T ss_pred ccCchhhhhccchhhhhcccccccceEEEeeeeecccccccccchhhccCchhhhhhhhcccccccCCcccceecccccc
Confidence 456788999999999998876632 222345678888999999999998776 22333333321
Q ss_pred --------------------------------------------------------------------------------
Q psy8415 461 -------------------------------------------------------------------------------- 460 (1561)
Q Consensus 461 -------------------------------------------------------------------------------- 460 (1561)
T Consensus 327 ar~l~~D~ap~~~~~a~~~hLls~~ssn~~s~~is~~~~d~~SPp~~~~~~~~sde~ls~V~~~kll~~t~~~ms~~l~~ 406 (1518)
T KOG1997|consen 327 ARPLPVDGAPPALLDARNMHLLAFLSSNFASLCISLSNKDEQSPPKGYGVGIASDDLLSMVEFFLLLIVTPFALSRALYY 406 (1518)
T ss_pred cCCCCcCCCCccccccchhhhhhhcchhHHHHHHHHHhccccCCcccccCCccchhhhhhhhhHHHHhhhhHHHHHHHhc
Confidence
Q ss_pred --cCCCcccchH----------------HHHHHHHHHHHHHHHHHHHHHHHHh-hCCCC------cchHHHHHHHHHHHH
Q psy8415 461 --YVSSTEKQEP----------------IQKCFRSLEYVFKFIIESRLLFSRA-TGGQY------EEGFQRDLFAVFNAL 515 (1561)
Q Consensus 461 --~~~~~~~~~~----------------L~~~lK~~~yiFkfIvkSr~l~~~~-~~~~~------~~~F~~~l~~lf~si 515 (1561)
+++..+. +. -..-.|.+|+++|..++|++.+..- .+... ..+|..+.......-
T Consensus 407 ~sn~Pte~~-~~~~~~~~~qn~~~~~~~~~~~~k~a~s~~~~~~~s~~~~iy~~~~r~~p~~~r~~~~~~~~~~~~v~~~ 485 (1518)
T KOG1997|consen 407 DSNAPTEED-KKIVERCIMQNVDCLLTERHERCKKALSFAKRQNSSLAFTIYHLLCRIEPCKLRELVSLLDDKTSEVLES 485 (1518)
T ss_pred cCCCCcchH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhcccchhhhhhhhHHHHHH
Confidence 1110000 00 0445788999999999999988642 22221 234555555443332
Q ss_pred HHHHhccccchh-HHHH-HHHHhhHHHHHhhhhH---HHHHHHHHHHHhhcccC----CCcchhHHHHHHHHHHHhcCCC
Q psy8415 516 NSMLSVSYDIIL-DTQV-TFKSGWVTLNRDYQLI---LEVAKFASDMLECLGKR----EAQPLLTKAKLECIKNLVSGKL 586 (1561)
Q Consensus 516 ~~lm~~~~~~li-~~Qt-~al~~~a~~l~dL~~v---~ev~~li~~fi~s~~~~----~~~~~L~~~KL~~i~~iv~~~L 586 (1561)
. ....-+.++ ..+. ..+-+.++++.++++. ++|+.+++....-+..+ .+...+..+++.+.+..|..++
T Consensus 486 ~--~~l~~~~i~l~~~~~~~~~~~a~~~~~~~s~~~~~~v~~~~r~~~~~l~~~~~~~~~~~s~~~~~~~~~~~l~~~~~ 563 (1518)
T KOG1997|consen 486 T--LKLGFKQIILDHDLEVEMPRRAFSLRNYLSSILIQFVFLSLRHDESPLRAKGARILVILSLLDEFFLRLEILCGHEH 563 (1518)
T ss_pred H--hhhcccccccHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhhcc
Confidence 2 111111111 1111 1345788899999988 88888877665555433 2234677888888886665444
Q ss_pred CC---------------------ChhhHHHH--HHHHHHHHH-HHhcchh---------hHHHHHH------HHHHHHHh
Q psy8415 587 FS---------------------EDESRSYL--LARICKHLR-LHLAHRD---------ELKLCTE------ILSEILSF 627 (1561)
Q Consensus 587 f~---------------------~~e~R~~L--lp~~~~~l~-~hl~~~~---------~~~lc~~------iL~~iL~~ 627 (1561)
.. .++.|... ++.+++-+. -+.-+.. ++.+... .+-.++..
T Consensus 564 ~~~l~lp~~~~~~~~~~~~~s~~~~~~~~~~~~~~kiv~~l~~ts~v~~q~~~~g~~~l~~~~~~~~~~e~~~~~~ils~ 643 (1518)
T KOG1997|consen 564 IVQLNLPFVNQILKEMPVSNSLGATESREVLTGVLKIVRNLDDTSLVKAQQQSIGSTFLEFKLMEEPFEEKKSLDSILSD 643 (1518)
T ss_pred hhhcccccccccchhcccCccccccceeccccchHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHhhhhhhhHHHHHHhhc
Confidence 32 12222211 111222111 0110000 0111100 01111111
Q ss_pred ------hhhcccccccCCcccccchHHHHHHHHHHhHHHHHHHHhhc----------------C----------------
Q psy8415 628 ------LYKKKRTCEVGGKVNNILHHDLELLCLSTLDMLIQTVLIII----------------D---------------- 669 (1561)
Q Consensus 628 ------L~~~~~~~~~~~~~~~~~~~~v~~l~~~lL~~l~~t~~~l~----------------~---------------- 669 (1561)
+...+..+++. .......+..+..+.+..+.++...+. +
T Consensus 644 s~~~~~l~~~a~~pry~---~~~~k~~~~~ls~~~l~~~~~~t~~l~~~~~~~~k~~~~~~l~~~~~~~~~~~g~~~~~v 720 (1518)
T KOG1997|consen 644 SNSRGLLSGHALDPRYV---ERTSKARIAYLSAPRLTFARDTTHTLLLSFLGDLKDTLTGSLDSHELKLRDVNGSMPPEV 720 (1518)
T ss_pred cccccccccCCCCchhh---hccccccchhhhhhHHhhhhhcchhhhhhhcccccccccccccchhhhhcccccccChhh
Confidence 11111111110 001111222333222222222111110 0
Q ss_pred -----------------------CC-----ChhhhhHHHHHHHHHHhcCHHHHHHHHHHhC--CcchHHHHHHHHHHHHH
Q psy8415 670 -----------------------RA-----TPVLGSLVACLIGLLQLLDESHYKKLWEELG--DKKPLKDFLLRAFLVLR 719 (1561)
Q Consensus 670 -----------------------~~-----~~~~~~l~acll~il~~m~~~~~~~~~~~~~--~~~dl~~fL~~~~~~~~ 719 (1561)
++ .+.++.+.+|.+|+++++.......||.... .-..+.+.|..++.+|+
T Consensus 721 a~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~e~i~~~l~c~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~ll~l~v~~f~ 800 (1518)
T KOG1997|consen 721 ALQLEGTPLNGYLWQASGKSLPVPSSNYLLREEIRQLLICRLGISKQALRRSLHRIWTQKLELDLENLLALLELCVLVFR 800 (1518)
T ss_pred hhccCCCCcCCCchhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhcchhhccchhhccChhhHHHHHHHHHHHHhhhh
Confidence 00 1568899999999999999999999997772 12345666666677777
Q ss_pred HhhcCCC------------------------------------CCCCcch----------------------------hh
Q psy8415 720 DLVKQDV------------------------------------FPPDWLV----------------------------MR 735 (1561)
Q Consensus 720 ~ll~~~~------------------------------------fP~~Wl~----------------------------m~ 735 (1561)
+..+..+ =|..|.. |.
T Consensus 801 ~~~~~a~~~~~s~~~~k~~~l~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~t~~~~~~e~~~~~~ls 880 (1518)
T KOG1997|consen 801 YNGKKAASRNISLDFGKLDCLKTRLRGFFSRLIRTRAEMKRRNEPLRFSKEFFPAFNATFDLHGTKGTTLLEALQATNLS 880 (1518)
T ss_pred hcchhhhhHHHhhhhHHHHHHHHHHHHHHHhhhhcchhhhhccccchhHHHHHHHhcCCcCCccchhhhhHHHHHHhHHH
Confidence 5544310 0111211 33
Q ss_pred hhhhHHHHHHHHHhhHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCC--ccccccCCHHHHHHHHHHHhhHHHHHHHHH
Q psy8415 736 MVTNQVILTALGHLAPPLIYWFLDSRGAFAYQVWSNYFNLAVSFLTQP--SLQLEKFSDVKREKIIEKYGDMRVQMGFQI 813 (1561)
Q Consensus 736 ~~~~~v~L~~L~~ls~~l~~~f~~~~~~Fd~~LW~~~f~~ll~~l~q~--~L~LE~~~~~kR~ai~~~~gD~R~~~a~ll 813 (1561)
.....+++.+.+.+++.... .+ -+..|.+..|.+++.+++.. ...+++. .+..|+...+++|+-.+
T Consensus 881 ~E~~~~v~~v~~~~~~~a~~--~~----~~~~l~~~~~~~~~~ll~~~~se~~l~h~-fA~~r~~~~kfp~l~fe----- 948 (1518)
T KOG1997|consen 881 QEVLLIVLDVAQNLIRLAAY--CD----ANDSLLGKALRILLNLLKSHQSETVLDHV-FATLRLFALKFPDLLFE----- 948 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHhc--cC----ccHHHHHHHHHHHHHHcccchHHHHHHHH-HHHHHHHHHHhHHHHHc-----
Confidence 34445555555666665543 12 23579999999999987655 3333444 44555566666776544
Q ss_pred HHHHHhcccccccccccchHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCC--CcHH
Q psy8415 814 LKVWSSLGEHKINFIPSMVGPFLEVTLVPENELRKATLNIFFDMMECEQRVHGNFKQVESELIDKLDILISDNK--GDDE 891 (1561)
Q Consensus 814 ~~~W~~Lg~~q~~fip~Lv~~iLe~cls~~~~lR~~a~~il~~mm~~E~~~~~~f~~ve~eiI~~Ld~Lv~~g~--gd~~ 891 (1561)
.....|..|+..+| +|-+.-...|+ |+.+|..+ +++..|+++++..++..+. +.+.
T Consensus 949 ---------~~~~~c~~~~~q~l-~c~ss~~~~r~---------~~~~~~~~---~~~~~q~~~~~~~~~~~~~~~~~s~ 1006 (1518)
T KOG1997|consen 949 ---------MDPEQCAHMLHQVL-HCESSRLATRQ---------KRNNFEAT---SRTLLQSTISVAAAEAKSVNSLRSR 1006 (1518)
T ss_pred ---------CChHHHHHHHHHHh-hhhhhhHHHHH---------HHHhcccc---hhhhhhhhhhHHHHHhhhcchHHHh
Confidence 34566778999999 88877666666 88888887 8899999999988876533 6667
Q ss_pred HHHHHHHHHHhhhcCCChhHHHhHHhHHHHHHHHHHHHhhcccccc----CCCC-cccchhH--HHhHHHHHHhhcCChh
Q psy8415 892 YRQLFNTILLDRVQNEDPQWKETGSAFISSVTRLLERLLDYRSVIQ----GDEN-RDKRMSC--TVNLLNFYKNEINRKE 964 (1561)
Q Consensus 892 ~r~~f~~iL~~~~~~~~~~l~~~~~~F~~~V~~ll~~Ll~~r~v~~----~~E~-~d~rm~~--tl~Ll~fyk~~~~r~e 964 (1561)
++++..+++-. ++.+..++ ...|+.+|++|+.+| |+++. +.|. .|..|.+ ..+|...|+ +.||
T Consensus 1007 ~~~~~~~l~~~--~~~~~~~~--~~~f~~~v~dl~~~l---~~~l~~t~~mk~h~~d~~~~~dl~y~l~~~y~---~~p~ 1076 (1518)
T KOG1997|consen 1007 LLESLRLLLAP--EKEDDNRK--ATAFPEQVKDLLRNL---RTVLMATVQMKEHAMDPEMLADLMYQLAKSYA---NSPD 1076 (1518)
T ss_pred hHHHHhhhcCc--hhhcchhh--hcchHHHHHHHHHHH---HHHHHHHHhHHHhhhCHHHHHHHHHHHHHhcC---CChH
Confidence 77777776542 23322444 678999999999998 54433 2333 4455554 447777776 9999
Q ss_pred HHHHHHHHHHHHHccCCChHHHHHHHHHHHH----Hc-----CccCCCCCCCCCCCCCCCCchhhhH-------------
Q psy8415 965 MYLRYIYKLHDLHRPADNFTEAGFTLKLYAD----SL-----SWTSSAPLINDPMCQPNGAPEWYRK------------- 1022 (1561)
Q Consensus 965 myiryv~~La~lH~~~~Ny~EAAl~L~lhA~----ll-----~W~~~~~l~~~~~~~~p~qt~~erK------------- 1022 (1561)
+++.|+..||+.|.+.|||.|||+|+++.|. ++ +|.+ .+++++..+..+.-.++.-|
T Consensus 1077 Lr~twl~~ma~~h~~~~~~~eaa~c~~~~aali~e~l~~r~~~~~~-~~~~~f~~i~~~v~ee~~~~~~~~~~d~~~~~~ 1155 (1518)
T KOG1997|consen 1077 LRITWLLSMAEIHEKNGNFAEAAQCYVHAAALIAEYLARREGSWLK-VGWRAFQKITPNVLEESATKEDAGSPDEEGFHF 1155 (1518)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHhcCCccc-ccchhhhccCcchhhhhccccccCCCCcccccc
Confidence 9999999999999999999999999996544 33 6766 66666654444332222221
Q ss_pred -----HHHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhhc----cCCCCceeEEEEe
Q psy8415 1023 -----EQLYYEIISYFDKGKCWEKGIPLCKELADLYEKRLFDYKKLSNILQTQAQFCDNILNQ----LRPEPEYFRVGFY 1093 (1561)
Q Consensus 1023 -----E~L~~~~i~~f~kg~~wE~ai~l~keL~~~YE~~~~Dy~kLs~i~~~~a~lY~~I~~~----~R~~~~YFRV~Fy 1093 (1561)
-.++++++.+|++|+.||...++||.++|.||++ ++|.+|+.+|..+..+|++|.++ +|.+|+|||||||
T Consensus 1156 te~~lv~~l~~~~~~~~~aelye~~~~v~kliipv~e~~-~~~~~L~~~~~~l~~~~~~i~~~~~~~kr~~g~yfrv~fy 1234 (1518)
T KOG1997|consen 1156 TEDGLVKLLELAAALLSKAELYELLAPVYKLIIPVLEKN-RSFKKLAKVHALLQRAYDKILEVESSPKRCFGTYFRVGFY 1234 (1518)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhhccccccccceeeeEeec
Confidence 1478999999999999998889999999999997 99999999999999999999874 8999999999999
Q ss_pred cCCCCCCCCCeeEEEccCCccCHHHHHHHHHhhCC------CcEEcCCCCCCCCCccCCCccEEEEEEeeecCCCCCCCC
Q psy8415 1094 GLSFPLFVRNKVFVYRGLAYERMEAFTQRLQTEFP------SANILSKNSPPSHTIQQSDVQYIQICNVKPLPERGPPCI 1167 (1561)
Q Consensus 1094 G~gFp~~lrnKeFIYrg~~~erL~~f~~RL~~~yp------~a~ii~~~~~~d~~~l~~~~qYIQIt~V~P~~d~~~~~~ 1167 (1561)
|..||+ ++|||||||++.+++|+||..||.+.|. +++||+++++++.+.+|++++|||||+|+||++..
T Consensus 1235 g~~fg~-~~~~e~vykep~~t~l~eis~rl~~~y~~~fg~~~v~Ii~ds~~v~~~~Ldp~~aYiQIT~Vepyf~~~---- 1309 (1518)
T KOG1997|consen 1235 GSKFGE-LDNKEYVYKEPALTKLAEISLRLEEFYTERFGADNVHIIKDSNPVDAEKLDPKKAYIQITYVEPYFEDY---- 1309 (1518)
T ss_pred hhhccc-ccchhhhhcchhhcchHHHHHHHHHHHHHhcCCCceEEecCCCcccHhhcCCCceEEEEEEeeccCchH----
Confidence 977776 9999999999999999999999999987 68999999999999999999999999999999985
Q ss_pred CCCCCCCCccccceeeecCcceEEEeeeecCCCCCCCcccccceEEEEEEEecCCCCccceeEEEeeeeEE----ec---
Q psy8415 1168 NPPLAPVPDKIAQYYQVNDVRTFQLDRPMHKGPIDKDNEFKSLWLERTIMTISSPLPGILRWFEVVESNVD----LE--- 1240 (1561)
Q Consensus 1168 ~~~~~~v~~~i~~y~~~~nv~~F~~~~Pf~k~~~~~~~e~~~~w~erTiltT~~~FP~ilrR~eVv~~~~~----IE--- 1240 (1561)
+..++.+.|.+|+|+++|+|++|||++|+ ++|++.+||++|||+||+++||||++|++|++++++ ||
T Consensus 1310 -----e~~~r~t~F~~~~n~~rf~~e~pft~~gr-~~g~l~Eq~krrtvltt~~~fpyvk~ri~vi~~~~~~l~pIEvai 1383 (1518)
T KOG1997|consen 1310 -----ELDDRETYFERNTNISRFVYETPFTLSGR-AHGELHEQCKRRTVLTTSNSFPYVKTRIPVISRSQIVLSPIEVAI 1383 (1518)
T ss_pred -----HHHhhhhHHhhccCcceEEEecCCCcccc-cccchHHHhhccceecccccccchhhhcceehhhhcccccHHHHH
Confidence 68889999999999999999999999998 899999999999999999999999999999999877 54
Q ss_pred -------------------CC-----CccccccccccchHHHHHHhhcCcccccCCCCChHHHHHHHHHHHHHHHHHHHH
Q psy8415 1241 -------------------NP-----GLQGTIDANVMGGIAKYQQAFFTPEFARGYPQYIPYINRLHILILEQVDVLENG 1296 (1561)
Q Consensus 1241 -------------------np-----~LqG~Vda~VNgG~~~Y~~aFl~~~~~~~~P~~~~~v~~Lk~~~~~~v~vl~~~ 1296 (1561)
+| .|||+|.++||+||.+||++||++.....+|.+ ++++|+.+|++|+..|++|
T Consensus 1384 e~~~kkt~el~~~~~~~~~d~k~LQ~~LQGsV~~tVN~Gpl~~a~vFl~~~~~~~~~~~--~~~kLr~~fr~f~~~C~~A 1461 (1518)
T KOG1997|consen 1384 EDMQKKTEELRKATNQEPPDPKMLQLVLQGSVGVTVNAGPLAYARVFLSEEPADRYPDR--HLNKLRLCFREFMKVCQDA 1461 (1518)
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHhhcceeceeccchHHHHHHHHccccccccchh--HHHHHHHHHHHHHHHHHHH
Confidence 22 999999999999999999999999988888754 8999999999999999999
Q ss_pred HHHhccCCCCCcHHHHHHHHHHHHHHHHhccCCCCcccc
Q psy8415 1297 LVVHGQLAPPGVQPLHKRLQERFAGLRQSIRKPPTESII 1335 (1561)
Q Consensus 1297 L~lH~~li~~~~~~~H~~Le~~F~~lk~~l~~~~~~~~~ 1335 (1561)
|++|+++|++||++||++|+++|+.|.++|.++++...-
T Consensus 1462 l~~n~~lI~~Dq~eyh~~L~~nf~~~~~~L~~~i~~~~~ 1500 (1518)
T KOG1997|consen 1462 LELNERLIGEDQKEYHEELESNFDSLVERLSPFITAQLS 1500 (1518)
T ss_pred HHHHHHhhcchHHHHHHHHHHhHHHHHHHhHHhHHHhhh
Confidence 999999999999999999999999999999999885443
No 3
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=100.00 E-value=6.5e-55 Score=467.13 Aligned_cols=193 Identities=39% Similarity=0.685 Sum_probs=171.6
Q ss_pred cceeeEEeecccccCCCCCCCCceEEEEEEEcCCCccccCceeccCCCCCcceEEEEEEEecCCCccceeEEEeeccccc
Q psy8415 185 RNDLYLILERGEFEKGGKSTGKNIEVTVQVLDSDGTVLQNCLWGASGSDTSSEYHSMIIYHHNSPCWSEIIRLAVPIERY 264 (1561)
Q Consensus 185 RNdLYVtl~~g~F~~~~k~~arNIeV~vevr~~dg~~i~~~I~~~sg~~~~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~ 264 (1561)
||||||||++|+|++++++++|||||+|+||+++|+.+++||+.|+|++++++|+|+|+||+++|.|+|||||.||++++
T Consensus 2 RNdLYvtl~~~~f~~~~~s~~rNIeVtv~vr~~~G~~i~~~i~~gsg~~~~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~ 81 (196)
T cd08694 2 RNDLYLTLVQGDFDKGSKTSDKNVEVTVSVCNEDGKIIPGVISLGAGEEPIDEYKSVIYYQVDKPKWFETFKVAIPIEDF 81 (196)
T ss_pred CccEEEEeeeeEEcCCCCCCcceEEEEEEEECCCCCCCceeEEcCCCCCcceeEEEEEEeecCCCCCceeEEEecChhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEeeccccccccC-CcceEEEEeeccCCCCceecCCceEEEEEeecc-cCCCCCCccccCCcchhhhccCCCC
Q psy8415 265 QSSHIRLEYRHCSTRDKADN-KKLLGFSFARLMEPSGATLQDCQHELFIYRCEE-RSKLDPGHYLGLASTVQEAQAGTVP 342 (1561)
Q Consensus 265 ~~~HLlFtFrH~S~~~k~~~-~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk~d~-~~~~~p~~YL~lp~~~~~~~~~~~~ 342 (1561)
++|||+||||||||++++|. |+||||||||||++||++|+||.|+|+|||+|+ ....++++||+||++..+......+
T Consensus 82 ~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~~~gt~l~dG~H~L~vYK~d~~~~~~~~~~Yl~lP~~~~~~~~~~~~ 161 (196)
T cd08694 82 KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQENGTTLTDGEHDLIVYKVDAKKKLEDAKAYLSLPSTRAELEARKSS 161 (196)
T ss_pred CCeEEEEEEEeeccccccCCCCCceEEEEEeeeccCCcEEccCCEEEEEEEeccccccccccceeeCCcchhhccccCCC
Confidence 99999999999999887762 599999999999878999999999999999997 4456778999999987655332222
Q ss_pred CCCCCCCccccccCCceEEEEEEEeeccccchhhH
Q psy8415 343 IPYKTDSAHYACSHKESVFIRTLLCSTKLTQNVEI 377 (1561)
Q Consensus 343 ~p~~~~~~~~~~~~k~~f~I~T~lcST~~TQd~~L 377 (1561)
.+......++..+.||.|+|+|.|||||+|||++|
T Consensus 162 ~~~~~~~~~~~~~~kd~f~i~t~lcSTklTQn~dl 196 (196)
T cd08694 162 PSGSASNLGLSLSSKDSFQISTLVCSTKLTQNVDL 196 (196)
T ss_pred CcccccccccccCCcceEEEEEEEecceecccCCC
Confidence 22111223566788999999999999999999875
No 4
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=100.00 E-value=1.1e-54 Score=465.65 Aligned_cols=187 Identities=58% Similarity=1.003 Sum_probs=173.6
Q ss_pred cceeeEEeecccccCCCCCCCCceEEEEEEEcCCCccccCceeccCCCCCcceEEEEEEEecCCCccceeEEEeeccccc
Q psy8415 185 RNDLYLILERGEFEKGGKSTGKNIEVTVQVLDSDGTVLQNCLWGASGSDTSSEYHSMIIYHHNSPCWSEIIRLAVPIERY 264 (1561)
Q Consensus 185 RNdLYVtl~~g~F~~~~k~~arNIeV~vevr~~dg~~i~~~I~~~sg~~~~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~ 264 (1561)
||||||||++|+|++++|+++|||||+|+||+++|+.+++||++++|.+++++|+|+|+||+++|.|+|||||.||++++
T Consensus 2 RNdlYvtl~~g~f~~~~k~~~rNIeV~v~v~~~~G~~~~~cI~~~~g~~~~se~~S~V~yH~~~P~W~EtiKi~lP~~~~ 81 (189)
T cd08695 2 RNDLYLTLERGEFEKGGKSTAKNIEVTMVVLDADGQVLKDCISLGSGEPPCSEYRSFVLYHNNSPRWNETIKLPIPIDKF 81 (189)
T ss_pred cccEEEEeeeeEEcCCCCCCcceEEEEEEEEcCCCCCccCCEEcCCCCCccceEEEEEEEcCCCCCCceeEEEecChhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEeeccccccccCCcceEEEEeeccCCCCceecCCceEEEEEeecc-cCCCCCCccccCCcchhhhccCCCCC
Q psy8415 265 QSSHIRLEYRHCSTRDKADNKKLLGFSFARLMEPSGATLQDCQHELFIYRCEE-RSKLDPGHYLGLASTVQEAQAGTVPI 343 (1561)
Q Consensus 265 ~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk~d~-~~~~~p~~YL~lp~~~~~~~~~~~~~ 343 (1561)
++|||+||||||||+++++ ++||||||||||++||++|+||.|+|.|||+|+ .+..++++||++|+...+..+... .
T Consensus 82 ~~~HL~FtfrH~S~~~k~~-~~pfg~s~lpL~~~~gt~l~Dg~H~L~vyk~d~~~~~~~~~~YL~lp~~~~~~~~~~~-~ 159 (189)
T cd08695 82 RGSHLRFEFRHCSTKDKGE-KKLFGFSFVPLMREDGTTLPDGSHELYVYKCDENATFLDPALYLGLPCSKEDFQGCPN-S 159 (189)
T ss_pred CCeeEEEEEEEeeeccCCC-CCceEEEEEeecccCCcEEcCCcEEEEEEeccccccccCccceEECCcccccccccCC-C
Confidence 9999999999999999887 899999999999988999999999999999997 457789999999998877654211 1
Q ss_pred CCCCCCccccccCCceEEEEEEEeeccccchhhH
Q psy8415 344 PYKTDSAHYACSHKESVFIRTLLCSTKLTQNVEI 377 (1561)
Q Consensus 344 p~~~~~~~~~~~~k~~f~I~T~lcST~~TQd~~L 377 (1561)
| ..+|..++|++|+|+|.||||+||||++|
T Consensus 160 ~----~~~~~~~~k~~~~I~T~LcSTklTQn~~l 189 (189)
T cd08695 160 P----SPLFSRSSKESFWIRTLLCSTKLTQNVDL 189 (189)
T ss_pred C----ccccccCCcceEEEEEEEEcceEeecCCC
Confidence 2 23689999999999999999999999875
No 5
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=100.00 E-value=1.2e-43 Score=380.92 Aligned_cols=175 Identities=18% Similarity=0.295 Sum_probs=152.0
Q ss_pred cceeeEEeecccccCCC-CCCCCceEEEEEEEcCCCccc--cCceeccCCCCCcceEEEEEEEecCCCccceeEEEeecc
Q psy8415 185 RNDLYLILERGEFEKGG-KSTGKNIEVTVQVLDSDGTVL--QNCLWGASGSDTSSEYHSMIIYHHNSPCWSEIIRLAVPI 261 (1561)
Q Consensus 185 RNdLYVtl~~g~F~~~~-k~~arNIeV~vevr~~dg~~i--~~~I~~~sg~~~~s~~~S~V~yHn~~P~w~EeIKi~LP~ 261 (1561)
||+|||||.+++|++++ .+++|||+|+|++|++||+.. .+|||+|+|+++.++|+|+|+||+++|.|+|||||+||+
T Consensus 2 ~N~LYVYP~~l~~~~~k~~~kaRNI~V~V~lrd~D~~~~~~l~~I~~g~g~~~~~~~~s~V~yh~k~P~f~dEiKI~LP~ 81 (185)
T cd08697 2 KNHLYVYPLHLKYDSQKTFAKARNIAVCIEFRDSDEEDAKPLKCIYYGPGGGFTTSAYAAVLHHNQNPEFYDEIKIELPT 81 (185)
T ss_pred cceEEEcccEEEecccccccccccEEEEEEEEeCCCCcCccceEEecCCCCCcceEEEEEEEEcCCCCccceeEEEecCC
Confidence 79999999999999987 588999999999999998654 369999988889999999999999999999999999999
Q ss_pred ccccCcEEEEEEeecccccc----cc--CCcceEEEEeeccCCCCceecCCceEEEEEeecccCCCCCCccccCCcchhh
Q psy8415 262 ERYQSSHIRLEYRHCSTRDK----AD--NKKLLGFSFARLMEPSGATLQDCQHELFIYRCEERSKLDPGHYLGLASTVQE 335 (1561)
Q Consensus 262 ~~~~~~HLlFtFrH~S~~~k----~~--~~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk~d~~~~~~p~~YL~lp~~~~~ 335 (1561)
+++++||||||||||||+.. ++ .+++|||||+|||+ ||+.|+||+|+||||+.-. ..+.+|++....
T Consensus 82 ~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~-~~~~l~~g~~~LpV~~~~p---~~~~~~~~~~~~--- 154 (185)
T cd08697 82 QLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK-DKGRLNSEEQTPPVANLLP---NYPDGYLSIQPH--- 154 (185)
T ss_pred cCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec-CCCEEecCCEeeeEEecCC---CCCccccccccC---
Confidence 99999999999999999632 11 15999999999999 7888999999999998322 124566664321
Q ss_pred hccCCCCCCCCCCCccccccCCceEEEEEEEeeccccchhhH
Q psy8415 336 AQAGTVPIPYKTDSAHYACSHKESVFIRTLLCSTKLTQNVEI 377 (1561)
Q Consensus 336 ~~~~~~~~p~~~~~~~~~~~~k~~f~I~T~lcST~~TQd~~L 377 (1561)
. ...+|+|++|+.|+|++.+|||+||||.+|
T Consensus 155 -------~----~~~~~~d~~k~~f~v~~~~vSsv~tqd~~l 185 (185)
T cd08697 155 -------G----PEVKWVDGGKPLFKVSTHLVSTVYTQDQHL 185 (185)
T ss_pred -------C----CCcEEecCCeeEEEEEEEEEcceecCCCCC
Confidence 1 257999999999999999999999999875
No 6
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=100.00 E-value=3.5e-43 Score=376.03 Aligned_cols=172 Identities=21% Similarity=0.364 Sum_probs=146.2
Q ss_pred cceeeEEeecccccCCCCCCCCceEEEEEEEcCCCc-cccCceeccCCCC-CcceEEEEEEEecCCCccceeEEEeeccc
Q psy8415 185 RNDLYLILERGEFEKGGKSTGKNIEVTVQVLDSDGT-VLQNCLWGASGSD-TSSEYHSMIIYHHNSPCWSEIIRLAVPIE 262 (1561)
Q Consensus 185 RNdLYVtl~~g~F~~~~k~~arNIeV~vevr~~dg~-~i~~~I~~~sg~~-~~s~~~S~V~yHn~~P~w~EeIKi~LP~~ 262 (1561)
||+|||||++++|++++ +++|||+|+|++|++|+. ...+||+.|.|.+ +.++|+|+|+|||++|.|+|||||+||++
T Consensus 2 rN~LYVyp~~~~f~~~~-~~~rNI~V~v~l~~~d~~~~~l~~i~~g~~~~~~~~~~~S~V~yHnk~P~f~DEiKi~LP~~ 80 (179)
T cd08696 2 RNLLYVYPQSLNFSNRL-GSARNIAVKVQLMSGEDESQALPVIFKGSSPEEFLTEAYTAVTYHNKSPDFYDEIKIKLPAD 80 (179)
T ss_pred cccEEEeccEEEecCCC-CCcCCEEEEEEEEeCCCCCccceEEEeCCCCCccceeEEEEEEEeCCCCcccceEEEEcCCC
Confidence 89999999999999875 789999999999997443 3457885454555 88999999999999999999999999999
Q ss_pred cccCcEEEEEEeecccccccc--C-CcceEEEEeeccCCCCceecCCceEEEEEeecccCCCCCCccccC-Ccchhhhcc
Q psy8415 263 RYQSSHIRLEYRHCSTRDKAD--N-KKLLGFSFARLMEPSGATLQDCQHELFIYRCEERSKLDPGHYLGL-ASTVQEAQA 338 (1561)
Q Consensus 263 ~~~~~HLlFtFrH~S~~~k~~--~-~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk~d~~~~~~p~~YL~l-p~~~~~~~~ 338 (1561)
++++|||+||||||||+++++ . ++||||||+|||+ +|+ |+||+|+||||+. .|++|++. ++..
T Consensus 81 l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~-~g~-L~~g~~~LpV~~~------~~p~~~~~~~~~~----- 147 (179)
T cd08696 81 LTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR-NGR-LQSGEFNLPVSLE------KPPSNYSPDSPEV----- 147 (179)
T ss_pred CCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec-CCE-EecCCEEEEEEec------CCCccccccCccc-----
Confidence 999999999999999998752 1 5999999999998 798 7899999999982 34555543 3221
Q ss_pred CCCCCCCCCCCccccccCCceEEEEEEEeeccccchhhH
Q psy8415 339 GTVPIPYKTDSAHYACSHKESVFIRTLLCSTKLTQNVEI 377 (1561)
Q Consensus 339 ~~~~~p~~~~~~~~~~~~k~~f~I~T~lcST~~TQd~~L 377 (1561)
.+| +.+|++++|+.|+|++.+|||+||||.+|
T Consensus 148 ---~~~----~~~~~d~~k~~f~v~~~~vSsv~~~d~~l 179 (179)
T cd08696 148 ---KLP----GTKWVDNHKGVFSVSVEAVSSVHTQDSYL 179 (179)
T ss_pred ---cCC----ccEEeeCCeeEEEEEEEEEeeEeecCCCC
Confidence 123 57999999999999999999999999875
No 7
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=100.00 E-value=1.5e-42 Score=377.67 Aligned_cols=177 Identities=34% Similarity=0.637 Sum_probs=122.7
Q ss_pred cceeeEEeecccccCCCCCCCCceEEEEEEEcCCCc-cccCceeccCCC-CCcceEEEEEEEecCCCccceeEEEeeccc
Q psy8415 185 RNDLYLILERGEFEKGGKSTGKNIEVTVQVLDSDGT-VLQNCLWGASGS-DTSSEYHSMIIYHHNSPCWSEIIRLAVPIE 262 (1561)
Q Consensus 185 RNdLYVtl~~g~F~~~~k~~arNIeV~vevr~~dg~-~i~~~I~~~sg~-~~~s~~~S~V~yHn~~P~w~EeIKi~LP~~ 262 (1561)
||+|||||++|+|++++++++|||+|+|+||++||. ...+|||+++|. ++.++|.|+|+||+++|.|+|||||+||.+
T Consensus 6 rN~LYv~~~s~~f~k~~k~~~rNi~v~v~lr~~d~~~~~~~~i~~~~~~~~~~~~~~S~v~yh~k~P~f~deiKi~LP~~ 85 (184)
T PF14429_consen 6 RNDLYVYPKSGNFSKSKKSSARNIEVTVELRDSDGNIKPLPCIYSRSSGPSFVTSYYSSVYYHNKNPQFNDEIKIQLPPD 85 (184)
T ss_dssp -EEEEEEEEEEE-SSSSSSS---EEEEEEEEETTS--B--S-EE-TTS--S-BS-EE----TT-SS-EEEEEEEEEE-CC
T ss_pred eeeEEEEeCEEEECCCCCCCcccEEEEEEEEeCCCCccccceEECCCCCCCcceEEEEEEEecCCCCCccEEEEEEcCch
Confidence 899999999999998878899999999999999999 689999999887 788999999999999999999999999999
Q ss_pred cccCcEEEEEEeeccccccccCCcceEEEEeeccCCCCceecCCceEEEEEeecccCCCCCCccccCCcchhhhccCCCC
Q psy8415 263 RYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLMEPSGATLQDCQHELFIYRCEERSKLDPGHYLGLASTVQEAQAGTVP 342 (1561)
Q Consensus 263 ~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk~d~~~~~~p~~YL~lp~~~~~~~~~~~~ 342 (1561)
++++|||+||||||||+++++..++||||||||++ +|++|+||+|+|+|||+|+....+|++||++++...
T Consensus 86 l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~-~g~~i~dg~~~L~v~~~~~~~~~~~~~Yl~~~~~~~-------- 156 (184)
T PF14429_consen 86 LFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD-NGTIIQDGEHELPVYKYDKKSKELPSNYLSLPSEAR-------- 156 (184)
T ss_dssp CCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB--TS-B--SEEEEEEEEE--HHHHT-HHHHTTS--BHH--------
T ss_pred hcccEEEEEEEEeeccccccCccceeEEEEEEeee-CCeEecCCCEEEEEEEcccccccCchhhccCCcccc--------
Confidence 99999999999999999877622899999999999 899999999999999999765568899999987653
Q ss_pred CCCCCCCccccccCCceEEEEEEEeeccccchhhH
Q psy8415 343 IPYKTDSAHYACSHKESVFIRTLLCSTKLTQNVEI 377 (1561)
Q Consensus 343 ~p~~~~~~~~~~~~k~~f~I~T~lcST~~TQd~~L 377 (1561)
.+|.++.|+.|+|+|.+|||++|||++|
T Consensus 157 -------~~~~~~~k~~~~v~t~l~ST~~tqd~~L 184 (184)
T PF14429_consen 157 -------GKWLDNKKPTFTVRTRLCSTVYTQDPNL 184 (184)
T ss_dssp -------HTTEEEECEEEEEEEEEE----------
T ss_pred -------cccccCCCCEEEEEEEEEcCccCCCCCC
Confidence 2688899999999999999999999876
No 8
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=100.00 E-value=1.4e-40 Score=360.35 Aligned_cols=173 Identities=37% Similarity=0.696 Sum_probs=153.5
Q ss_pred cceeeEEeecccccCCCCCCCCceEEEEEEEcCCCccccCcee-ccCCCCCcceEEEEEEEecCCCccceeEEEeecccc
Q psy8415 185 RNDLYLILERGEFEKGGKSTGKNIEVTVQVLDSDGTVLQNCLW-GASGSDTSSEYHSMIIYHHNSPCWSEIIRLAVPIER 263 (1561)
Q Consensus 185 RNdLYVtl~~g~F~~~~k~~arNIeV~vevr~~dg~~i~~~I~-~~sg~~~~s~~~S~V~yHn~~P~w~EeIKi~LP~~~ 263 (1561)
||+|||||++++|++++ +++|||+|+|+||++||+.+.+||+ .|+|....++|.|+|+|| ++|.|+|||||+||.++
T Consensus 2 rN~LYi~p~~~~~~~~~-~~~rNi~v~v~~r~~d~~~~~~~i~~~~~~~~~~s~~~sv~~~~-k~p~f~deiKi~LP~~l 79 (178)
T cd08679 2 RNDLYVYPQSGELSKAK-SKGRNIEITVEVRDDDGDIIEPCISAPGSGSELRSEYTSVVYYH-KNPVFNDEIKIQLPADL 79 (178)
T ss_pred CccEEEEeeEEEEcCCC-CccccEEEEEEEEcCCCCcccccEEEcCCCCccceeEEEEEEcC-CCCCCceeEEEecCCcc
Confidence 89999999999999875 7899999999999999999999999 888887889999988888 99999999999999999
Q ss_pred ccCcEEEEEEeecccccc---ccCCcceEEEEeeccCCCCceecCCceEEEEEeecccCCCCCCccccCCcchhhhccCC
Q psy8415 264 YQSSHIRLEYRHCSTRDK---ADNKKLLGFSFARLMEPSGATLQDCQHELFIYRCEERSKLDPGHYLGLASTVQEAQAGT 340 (1561)
Q Consensus 264 ~~~~HLlFtFrH~S~~~k---~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk~d~~~~~~p~~YL~lp~~~~~~~~~~ 340 (1561)
+++|||+||||||+|+++ +. +++|||||||||+.+|++|+||+|+|||||++.....++.+|+++|+....
T Consensus 80 ~~~~HLlFtf~hv~~~~~~~~~~-~~~~g~a~lpL~~~~g~~i~dg~~~L~v~k~~~~~~~~~~~yl~~~~~~~~----- 153 (178)
T cd08679 80 TPQHHLLFTFYHVSSKKKQGDKE-ETPFGYAFLPLMDKDGAFIKDGDHTLPVYKYDKRPDVGPSGYLSLPSTLAN----- 153 (178)
T ss_pred CCCeEEEEEEEccccccccCCCc-cceEEEEEEeccccCCcEEcCCCEEEEEEecCCccccCccccccChhhhcc-----
Confidence 999999999999999986 33 699999999999878999999999999999886334567899997765421
Q ss_pred CCCCCCCCCccccccCCceEEEEEEEeeccccchhhH
Q psy8415 341 VPIPYKTDSAHYACSHKESVFIRTLLCSTKLTQNVEI 377 (1561)
Q Consensus 341 ~~~p~~~~~~~~~~~~k~~f~I~T~lcST~~TQd~~L 377 (1561)
.++.++.|+|+|.+|||+||||.+|
T Consensus 154 ------------~~~~~~~f~v~t~l~ST~~tqd~~l 178 (178)
T cd08679 154 ------------GKSSKDTFKIKTRLCSTILTQDKSL 178 (178)
T ss_pred ------------cccCCceEEEEEEEEccccccCCCC
Confidence 1233499999999999999999864
No 9
>PF06920 Ded_cyto: Dedicator of cytokinesis; InterPro: IPR010703 This family represents a conserved region of approximately 200 residues within a number of eukaryotic dedicator of cytokinesis (DOCK) proteins. These proteins are potential guanine nucleotide exchange factors that activate some small GTPases, such as Rac, by exchanging bound GDP for free GTP []. DOCK proteins are required during several cellular processes, such as cell motility and phagocytosis. For instance, DOCK2 is specifically expressed in haemopoietic cells, and plays a critical role in lymphocyte migration [].; GO: 0005085 guanyl-nucleotide exchange factor activity, 0005525 GTP binding, 0051020 GTPase binding; PDB: 2WMO_A 2WM9_A 2WMN_A 3VHL_A 3B13_A 2YIN_B.
Probab=99.98 E-value=3.9e-33 Score=302.17 Aligned_cols=147 Identities=37% Similarity=0.681 Sum_probs=133.8
Q ss_pred cceeeecCcceEEEeeeecCCCCCCCcccccceEEEEEEEecCCCCccceeEEEeeeeEE----ec--------------
Q psy8415 1179 AQYYQVNDVRTFQLDRPMHKGPIDKDNEFKSLWLERTIMTISSPLPGILRWFEVVESNVD----LE-------------- 1240 (1561)
Q Consensus 1179 ~~y~~~~nv~~F~~~~Pf~k~~~~~~~e~~~~w~erTiltT~~~FP~ilrR~eVv~~~~~----IE-------------- 1240 (1561)
+.||++||+++|+|++||+++|+ ++|++++||+|||+|+|+++||||+||++|++++++ ||
T Consensus 1 t~f~~~~~i~~F~~~~pf~k~~~-~~~~~~~~~~~kti~~t~~~fP~ilrR~~V~~~~~~~lsPie~Aie~i~~k~~eL~ 79 (178)
T PF06920_consen 1 TQFYRNNNINKFSYERPFTKDGK-KQGEVAEQWKEKTILTTEDPFPSILRRSEVISKEEIELSPIENAIEDIEKKNKELE 79 (178)
T ss_dssp SCHHHCSSEEEEEEEEEEETTSS-SS-TTCCEEEEEEEEEEEEEESSSSSEEEEEEEEEEEE-HHHHHHHHHHHHHHHHH
T ss_pred CceEEecCcCeEEeccceecCCC-CCCcHhhheeeeEEEEecCCCCCcceeeeecccCcEEcCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999998 889999999999999999999999999999999877 44
Q ss_pred ----------CC---CccccccccccchHHHHHHhhcCcccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy8415 1241 ----------NP---GLQGTIDANVMGGIAKYQQAFFTPEFARGYPQYIPYINRLHILILEQVDVLENGLVVHGQLAPPG 1307 (1561)
Q Consensus 1241 ----------np---~LqG~Vda~VNgG~~~Y~~aFl~~~~~~~~P~~~~~v~~Lk~~~~~~v~vl~~~L~lH~~li~~~ 1307 (1561)
++ .|||+|||+|||||.+|+++||++++. +|.+.+++++|+.+|.+|+.+|++||.+|+++|+++
T Consensus 80 ~~~~~~~~~~~~L~~~L~G~v~a~VngG~~~y~~~Fl~~~~~--~~~~~~~~~~L~~~~~~~~~~~~~~L~~h~~~~~~~ 157 (178)
T PF06920_consen 80 ELINSYKPNINPLQMLLQGSVDAAVNGGPSKYAEAFLSPEYL--HPEDKELVEKLKEAFIDQLIVLERALELHKKLCSPE 157 (178)
T ss_dssp HHHHHSSS-HHHHHHHHHHHHS-SSS-TTHHHHHHHSSCHHC--SHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--GG
T ss_pred HHHHhhccchhHHHHHhcccccccccCchHHHHHHHcCcccc--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCChh
Confidence 12 899999999999999999999999987 789999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccC
Q psy8415 1308 VQPLHKRLQERFAGLRQSIRK 1328 (1561)
Q Consensus 1308 ~~~~H~~Le~~F~~lk~~l~~ 1328 (1561)
++++|++|+++|++|++++++
T Consensus 158 ~~~lh~~le~~f~~~~~~l~~ 178 (178)
T PF06920_consen 158 QRPLHEELESGFENLKKELEP 178 (178)
T ss_dssp GHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999874
No 10
>KOG1998|consensus
Probab=99.73 E-value=2.1e-20 Score=243.06 Aligned_cols=1004 Identities=8% Similarity=-0.153 Sum_probs=552.3
Q ss_pred cceEEEEeeccCCCCceecCCceEEEEEeecccCCCCCCccccCCcchhhhccCCCCCCCCCCCccccccCCceEEEEEE
Q psy8415 286 KLLGFSFARLMEPSGATLQDCQHELFIYRCEERSKLDPGHYLGLASTVQEAQAGTVPIPYKTDSAHYACSHKESVFIRTL 365 (1561)
Q Consensus 286 ~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk~d~~~~~~p~~YL~lp~~~~~~~~~~~~~p~~~~~~~~~~~~k~~f~I~T~ 365 (1561)
.-|..++...++.+|.++-++ |+++.......-.||..|---+.+... ..+.+.-.....++.+.-+--
T Consensus 347 frf~ss~dk~~~~~k~f~~~~-----v~lmrd~G~~l~dg~h~L~v~k~d~~~------~~d~~n~~~~~~~e~~~~~k~ 415 (1548)
T KOG1998|consen 347 FRHCSTKDKTDKEKKLFAFAF-----VKLMRDDGTTLEDGIHDLRVYKCDNPS------LEDASNYLKLPSMEASLYDKG 415 (1548)
T ss_pred HHhhccccccCccCCceeeeE-----EEEeccCCccccCCceeEEEEecccch------hhhhhhhhhcccchHHHHhcc
Confidence 456677777776667776444 666665433344566655432221111 001111222345666777788
Q ss_pred EeeccccchhhHHHhhcccCChhHHHHHHHHhhc-CcchhhhhccHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHH
Q psy8415 366 LCSTKLTQNVEILNLLKWREHPEKIQEALNQALC-LEGQELVKFLQDILDALFSMFSTEDGNSTMHSGLVFHVLTHIFSL 444 (1561)
Q Consensus 366 lcST~~TQd~~Ll~LL~W~~~p~~L~~~L~~l~~-v~~~eiVKFL~~IlDaLF~IL~~~~~~s~~~~~lVF~aLV~Ii~l 444 (1561)
.|+|..+++...++++.|+..+.....+..++.. ++..+ +-+-+.....++..| +.. ...-+..||++|..|+.+
T Consensus 416 ~~~q~~s~~s~~~s~s~ke~~~ist~~~st~ltqN~dlL~-ll~wr~~~e~~~~~L-~ql--~~v~~eev~k~l~~iL~~ 491 (1548)
T KOG1998|consen 416 MDAQRKSPSSGGFSRSSKEFFFISTLLCSTKLTQNVDLLG-LLKWRMLPELLQDSL-MQL--ANVSGEELVKFLQDILDA 491 (1548)
T ss_pred ccccccCccccceeeeccccceeeehhhcccccccHHHHH-HHHHHhhHHHHHHHH-HHh--cCCChHHHHHHHHHHHHH
Confidence 9999999999999999999766444444444433 33333 455566666777777 322 345688999999999988
Q ss_pred hhccc---------------hhHHHHHHhhccCCCcccchHH---HHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchHHH
Q psy8415 445 LYDSK---------------GLITSIQHCADYVSSTEKQEPI---QKCFRSLEYVFKFIIESRLLFSRATGGQYEEGFQR 506 (1561)
Q Consensus 445 v~d~r---------------~Ll~s~~~y~~~~~~~~~~~~L---~~~lK~~~yiFkfIvkSr~l~~~~~~~~~~~~F~~ 506 (1561)
+.--. .++..+.-..++-- ...++. ......+.+++..-+.++.+.-..++...+..+..
T Consensus 492 L~~~~~~~~~s~~~~~lVfd~lv~i~~l~~~~kf--~~~rp~~~~~~~k~fs~~l~~~~l~~~l~~~~~~~~~~~~~~~~ 569 (1548)
T KOG1998|consen 492 LFVLLEEESQSETYDELVFDVLVSILSLLADRKF--QHFRPVMNTYIKKHFSATLAYKKLTKVLKVHMDTSISREHNEEI 569 (1548)
T ss_pred HHHhcccccchhhccchhHHHHHHHHHHHHhhcc--cccccccHHHHHhHHHHHHHHhhhHHHHHhhhcccccccccHHH
Confidence 75211 22222222222110 011111 11122334455555555555444555444333333
Q ss_pred HHH-HHHHHHHHHHhccccchhHHHHHHHHhhHHHHHhhhhH-----HHHHHHHH---------HHHhhcccCCCcchhH
Q psy8415 507 DLF-AVFNALNSMLSVSYDIILDTQVTFKSGWVTLNRDYQLI-----LEVAKFAS---------DMLECLGKREAQPLLT 571 (1561)
Q Consensus 507 ~l~-~lf~si~~lm~~~~~~li~~Qt~al~~~a~~l~dL~~v-----~ev~~li~---------~fi~s~~~~~~~~~L~ 571 (1561)
+.. .....+..++-...+....++ .-+...++-...... ..+...+. .+..+++
T Consensus 570 r~~~~~~~~ifkiiV~S~~~~~~~~--e~~~~~~f~~~~~~lft~~~~~l~~~~~n~~ii~~qea~l~~~~--------- 638 (1548)
T KOG1998|consen 570 REAFKVLEYIFKIIVLSRKLFSRAT--EPSEEEEFRRQLKSLFTKILGGLASQSKNKEIIRVQEAALKSIP--------- 638 (1548)
T ss_pred HHHHHhhhhceEEEEeecccccchh--ccchhHHHHHHHhhhhhhcchhhhhhhhcccccchHHHHHhhcc---------
Confidence 222 222222223222222222222 122222222222221 22222111 1222221
Q ss_pred HHHHHHHHHHhcCCCCC--ChhhHHH--HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhhhhcccccccCCcccccchH
Q psy8415 572 KAKLECIKNLVSGKLFS--EDESRSY--LLARICKHLRLHLAHRDELKLCTEILSEILSFLYKKKRTCEVGGKVNNILHH 647 (1561)
Q Consensus 572 ~~KL~~i~~iv~~~Lf~--~~e~R~~--Llp~~~~~l~~hl~~~~~~~lc~~iL~~iL~~L~~~~~~~~~~~~~~~~~~~ 647 (1561)
++...++. .-+++.. ++......+..++-.++.+.+|.+|+...+-..... ...
T Consensus 639 ---------~i~~~~~~~~~~~~~el~~~i~~~~~~v~~~~~~~~kl~~~~kiV~~~lf~~s~~-------------R~~ 696 (1548)
T KOG1998|consen 639 ---------TIDHDLLDELLFDPKELSLLILEFILNVPEKFLTQQKLNCLKKLVDSRLFSSSDC-------------REQ 696 (1548)
T ss_pred ---------hhhhhhhhhcchhhHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHhhhhhHHHH-------------HHH
Confidence 11111111 0111111 333444445555556777888888887765441110 000
Q ss_pred HHHHHHHHHhHHHHHHHHhhcCC-CChhhhhHHHHHHHHHHhcCHHHHHHHHHHhCCcchHHHHHHHHHHHHHHhhcCCC
Q psy8415 648 DLELLCLSTLDMLIQTVLIIIDR-ATPVLGSLVACLIGLLQLLDESHYKKLWEELGDKKPLKDFLLRAFLVLRDLVKQDV 726 (1561)
Q Consensus 648 ~v~~l~~~lL~~l~~t~~~l~~~-~~~~~~~l~acll~il~~m~~~~~~~~~~~~~~~~dl~~fL~~~~~~~~~ll~~~~ 726 (1561)
-...++..+...+.+. .++... .....+..+.|.+.-+..-+..+|..+|... +...+..++.--..++....
T Consensus 697 ll~~~~~~l~~~l~r~-~~~~~~as~~~~~~~~i~~i~~~~~~~~~~~~~~~l~~-----l~~~~l~~~~~~~~~~~r~~ 770 (1548)
T KOG1998|consen 697 LLPVITKHLKNHLPRV-DELSAPASVSPECTVLISSILEVLFEKVNRYLQSLLDS-----LCSALLRIVRRTVISMGRVS 770 (1548)
T ss_pred HHHHHHHHhhccCcch-hhhhchhhccccchhhhhhhHHHHHHHHhhhhhhhHHH-----HHHHHHHHHhHHHHhhhhHh
Confidence 0001111111111111 000000 0011234455666555556666776655333 21111222111111111111
Q ss_pred CCCCcchhhhhhhHHHHHHHHHhhHHHHhhcCCCCCchhHHHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHhhHH
Q psy8415 727 FPPDWLVMRMVTNQVILTALGHLAPPLIYWFLDSRGAFAYQVWSNYFNLAVSFLTQPSLQLEKFSDVKREKIIEKYGDMR 806 (1561)
Q Consensus 727 fP~~Wl~m~~~~~~v~L~~L~~ls~~l~~~f~~~~~~Fd~~LW~~~f~~ll~~l~q~~L~LE~~~~~kR~ai~~~~gD~R 806 (1561)
+--.| .++.+++. .-++..+.|-.+|.-.+ .+++++.|.+-+..+ ||
T Consensus 771 ~~~~~--------------------~lvsc~la-~l~~ms~~~ys~~~e~~---k~~~~~~efl~e~~~---------m~ 817 (1548)
T KOG1998|consen 771 NLILS--------------------HFVSCLLA-LLNQMSDQHYSHYIEEF---KSDTDLKDFLMETFI---------MF 817 (1548)
T ss_pred hccch--------------------hhHHHhhh-hhhhhhhhhHHHHHHhh---cChHHHHHHHHhHHH---------HH
Confidence 21223 11112221 12345566666666555 888888887766444 44
Q ss_pred HHHHHHHHHHHHhcccccccccccchHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCC
Q psy8415 807 VQMGFQILKVWSSLGEHKINFIPSMVGPFLEVTLVPENELRKATLNIFFDMMECEQRVHGNFKQVESELIDKLDILISDN 886 (1561)
Q Consensus 807 ~~~a~ll~~~W~~Lg~~q~~fip~Lv~~iLe~cls~~~~lR~~a~~il~~mm~~E~~~~~~f~~ve~eiI~~Ld~Lv~~g 886 (1561)
+.++... +|-+.+.....+ ....+++.|+.....+++....-.. .+.---++-|.-+...++...+.|-...
T Consensus 818 ~~L~~k~--v~P~~wm~m~~l---~n~v~l~~l~~~~~~~~~~~ls~~~---f~~qlw~~yf~lvvsFltq~sl~L~~~~ 889 (1548)
T KOG1998|consen 818 RDLLGKN--VFPSDWMVMNML---QNKVLLRSLNQYAKSANQKFLSSTS---FDFQLWNEYFSLAVAFLTQPSLQLEQFS 889 (1548)
T ss_pred HHHccCc--CCchHHHHHHHh---hhHHHHHHHHHHHHhhccccCCccc---ccHHHHHhhhheeeEeecChHhhhchhh
Confidence 4333222 443333211111 1556666666665555544333332 1111123447778888888888887766
Q ss_pred CCcHHHHHHHHHHHHhhhcCCChhHHHhHHhHHHHHHHHHHHHhhccccccCCCCcccchhHHHhHHHHHHhhcCChhHH
Q psy8415 887 KGDDEYRQLFNTILLDRVQNEDPQWKETGSAFISSVTRLLERLLDYRSVIQGDENRDKRMSCTVNLLNFYKNEINRKEMY 966 (1561)
Q Consensus 887 ~gd~~~r~~f~~iL~~~~~~~~~~l~~~~~~F~~~V~~ll~~Ll~~r~v~~~~E~~d~rm~~tl~Ll~fyk~~~~r~emy 966 (1561)
.++......+.+.|....+-+...|.. ...+.+.+....... +..+.+.++++.++.....+|.+.++.+.
T Consensus 890 ~~~r~~i~~~ygdmr~~~a~~l~smw~-~l~~~k~~~iP~mvg------~~levtlv~~~e~R~a~i~iF~dmm~~E~-- 960 (1548)
T KOG1998|consen 890 IAKRKKILDKYGDMRKLMAFELRSMWS-LLGQHKIHFIPSMVG------PFLEVTLVPEPELRKATIPIFFDMMQCER-- 960 (1548)
T ss_pred cccchhhhhhhhHHHHHHHhhhHHHHh-hccccceeecccccC------CccceeccCchhhhhhccccchHHHhhhh--
Confidence 655555555555554433322212322 333444333333222 23456666777777777777775555554
Q ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcccchhhhHHHH
Q psy8415 967 LRYIYKLHDLHRPADNFTEAGFTLKLYADSLSWTSSAPLINDPMCQPNGAPEWYRKEQLYYEIISYFDKGKCWEKGIPLC 1046 (1561)
Q Consensus 967 iryv~~La~lH~~~~Ny~EAAl~L~lhA~ll~W~~~~~l~~~~~~~~p~qt~~erKE~L~~~~i~~f~kg~~wE~ai~l~ 1046 (1561)
++.++.+++.+ .+++++..|.+ .+-..... .---+..+.+++..+....+++.+| -++
T Consensus 961 ------------r~~gsf~~~~s-eli~kLds~v~-egk~~~~~-~el~~~i~~~~~~~~~~l~k~~~~~-------fv~ 1018 (1548)
T KOG1998|consen 961 ------------RRSGSFQHFES-ELISKLDSLVS-EGKGDESY-KELFRAILLEFGPRHKPLAKTVGEA-------FVR 1018 (1548)
T ss_pred ------------hhcCCchhhhh-Hhhhchhcccc-ccccchhh-hhhhhHhhhhccccCChhhhhhhhH-------HHH
Confidence 66777888888 99999999977 33322110 0112345567777788888888887 899
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhhccCCCCceeEEEEecCCCCCCCCCeeEEEccCCccCHHHHHHHHHhh
Q psy8415 1047 KELADLYEKRLFDYKKLSNILQTQAQFCDNILNQLRPEPEYFRVGFYGLSFPLFVRNKVFVYRGLAYERMEAFTQRLQTE 1126 (1561)
Q Consensus 1047 keL~~~YE~~~~Dy~kLs~i~~~~a~lY~~I~~~~R~~~~YFRV~FyG~gFp~~lrnKeFIYrg~~~erL~~f~~RL~~~ 1126 (1561)
+++.-.|+-.-|++..++|+...... ++-++-.=+. +.|++++|+|-+++-+..+++|.|++..+.+|.-++.+|+-.
T Consensus 1019 ~vl~~L~~~~d~~~~~~~E~~d~~~~-~tv~L~~~y~-e~nr~Emy~ryiykL~dlh~q~~n~~eAa~tL~l~a~~L~wd 1096 (1548)
T KOG1998|consen 1019 SVLRLLERLLDYRSIMNGEEKDNKMS-CTVNLLNFYK-EINREEMYIRYIYKLCDLHLQAENYTEAAFTLLLHAGLLKWD 1096 (1548)
T ss_pred HHHHHHHHHHHHhhccchhhhhhhhH-HHHHHHHhcc-hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhcC
Confidence 99999999888888899999888877 7766666566 889999999999999999999999999999999999999999
Q ss_pred CCCcEEcCCCCCCCCCccCCCccEEEEEEeeecCCCCCCCCCCCCCCCCccccceeeecCcceEEEeeeecCCCCCCCcc
Q psy8415 1127 FPSANILSKNSPPSHTIQQSDVQYIQICNVKPLPERGPPCINPPLAPVPDKIAQYYQVNDVRTFQLDRPMHKGPIDKDNE 1206 (1561)
Q Consensus 1127 yp~a~ii~~~~~~d~~~l~~~~qYIQIt~V~P~~d~~~~~~~~~~~~v~~~i~~y~~~~nv~~F~~~~Pf~k~~~~~~~e 1206 (1561)
.+.+. ..+++-.....-.++.|+..+-|.....-+.. ...-+..+...++-.|.+-.|.+.++..+...+..++
T Consensus 1097 ~~~~~----~~~~~~~~q~~~q~KE~L~~e~~~~F~kGk~w--E~ai~l~keL~~~Yen~~~Dy~~Ls~~~~~~A~~y~~ 1170 (1548)
T KOG1998|consen 1097 DDDLL----IQFLPYPEQTHRQRKEYLYEEIIHYFDKGKMW--EKAIALCKELAEQYENIIFDYNKLSELLIQIAQFYTN 1170 (1548)
T ss_pred Cchhc----ccCCCCcccccHHHHHHHHHHhhhccccccCh--hhhchHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 98877 34555666777788999999988877551100 0112233333333345677788888888887667789
Q ss_pred cccceEEEEEEEecCCCCccceeEEEeeeeEE----ec-----------------------------CC-Cccccccccc
Q psy8415 1207 FKSLWLERTIMTISSPLPGILRWFEVVESNVD----LE-----------------------------NP-GLQGTIDANV 1252 (1561)
Q Consensus 1207 ~~~~w~erTiltT~~~FP~ilrR~eVv~~~~~----IE-----------------------------np-~LqG~Vda~V 1252 (1561)
+..+|..+++|--...+|....|+.+-.+-+. .| |+ . ||+.++.|
T Consensus 1171 i~~~~R~~p~yf~V~fyG~gfP~~lrnk~fv~rg~~~E~~~~f~~rl~~e~~a~~~~~~~~p~~~i~nsp~-qyi~~~~V 1249 (1548)
T KOG1998|consen 1171 IMKILRPEPEYFRVGFYGQGFPKFLRNKVFVYRGLEYERIEAFQQRLLTEFPAEIMHTTSPPDDAILNSPG-QYIQVFSV 1249 (1548)
T ss_pred HHHhhcccccEEEEeccccCcchhhcCceEEEeCchHHHHHHHHHHHHHhCchhhhcCCCCCcccccCCCc-ceeEEeee
Confidence 99999999999999999999888887666554 22 22 6 99999999
Q ss_pred cchHHHHHHhhcCcccccCCCC---ChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHhccCC
Q psy8415 1253 MGGIAKYQQAFFTPEFARGYPQ---YIPYINRLHILILEQVDVLENGLVVHGQLAPPGVQPLHKRLQERFAGLRQSIRKP 1329 (1561)
Q Consensus 1253 NgG~~~Y~~aFl~~~~~~~~P~---~~~~v~~Lk~~~~~~v~vl~~~L~lH~~li~~~~~~~H~~Le~~F~~lk~~l~~~ 1329 (1561)
.+|...|.+++. ++.... +. ....|++|+-..- +|...|++..+.--.+.|......+-..+.+..+.
T Consensus 1250 ~p~~~~~~~~~~-~~v~~~-i~~~~~~~~vqrf~y~~~-------~~~~~~~~ef~s~wier~~~~ta~~lp~~lr~~ev 1320 (1548)
T KOG1998|consen 1250 EPVLDISPNFNN-DPVSEQ-INKFYRYNEVQRFEYSRP-------KGTVDPDNEFASLWIERTIYHTAYKLPGILRWFEV 1320 (1548)
T ss_pred ccccccchhhcC-CccchH-HHhhhheeeeeeEEEecc-------ccccCcccchhhcceeeeeeeccccCcchhhhhhh
Confidence 999999998777 432111 10 1112333332222 77777887777765666655555544444444443
Q ss_pred CC----c-cccCCCCCCCCCc------ccCCCCCCCccCcccccCCCCCCCCCC--CC---------CCC--CCCCCCCC
Q psy8415 1330 PT----E-SIIHSPLPPVPDQ------YINAGYHPVEEGEDIYSRPGDLDLGEG--DG---------EAP--CLPQRPRS 1385 (1561)
Q Consensus 1330 ~~----~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~~~--~~~~~~~~ 1385 (1561)
.. + .+..+...++++. .++.-.+++....+.|+++++.+++-+ +| +++ --+|+|++
T Consensus 1321 ~~~~~~~~splenaie~m~~~~~el~~~~~~~~~d~~~~~~~lS~~~~g~v~a~vmgg~~~y~~~f~~~~~~~~~~~~~~ 1400 (1548)
T KOG1998|consen 1321 VKVTMSELSPLENAIETMQVKNKELNEMILQYHSDPNLPINPLSMLLNGTVDAAVMGGISNYEKAFFTETYLQFHQDKLG 1400 (1548)
T ss_pred heeeeeecchhhhhhhhhhhhHHHHHHHHHHhccCCCccccccccccCCcccccccccHHHHHHHhhhhhhhhcccchHH
Confidence 22 2 2222222244443 345556788888999999999877622 22 111 01155555
Q ss_pred CCcCCCCCCCCCCCcCcCCCCCccccccccCCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q psy8415 1386 AGYGTLPPADKPKPAHQRLPSKSSVHKRQSSDSGFSSCTAHMRNSWSETYEEAPPLPPRGFTPDKRSSGEPPSLHRR 1462 (1561)
Q Consensus 1386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1462 (1561)
....-...-.+++ ..-|+-|--++ |++ +.|+++.++|++.++++-...|+
T Consensus 1401 ~l~~li~eqi~~l---------------------~~~~~~h~~~~-----p~~-~~p~h~~l~~~f~~~~~~~~~~~ 1450 (1548)
T KOG1998|consen 1401 RLKDLIAEQIPIL---------------------GRCLTLHAELV-----PSK-LRPFHDRLEECFKQLKAKVEEEY 1450 (1548)
T ss_pred HHHHHHHhhhhhh---------------------hhhhhhhhhhC-----CCC-CCCchhhhHHHHHhhHHHHHHhh
Confidence 4333222212121 11245666666 678 89999999999988866555444
No 11
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.07 E-value=0.13 Score=55.66 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=54.3
Q ss_pred CCCccceeEEEeecccccc-CcEEEEEEeecccccc-ccCCcceEEEEeeccCCCCceecCCceEEEEEee
Q psy8415 247 NSPCWSEIIRLAVPIERYQ-SSHIRLEYRHCSTRDK-ADNKKLLGFSFARLMEPSGATLQDCQHELFIYRC 315 (1561)
Q Consensus 247 ~~P~w~EeIKi~LP~~~~~-~~HLlFtFrH~S~~~k-~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk~ 315 (1561)
.++.|+|.+++.|.....+ .+-|-|+.+-++.+.. ++...+||++=++|++.+|. |+.|.|.|.++..
T Consensus 53 ~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~~~~-Lr~G~~~L~lW~~ 122 (158)
T cd08398 53 SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDYTDT-LVSGKMALNLWPV 122 (158)
T ss_pred CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECCCCh-hhCCCEEEEEEcC
Confidence 4689999999888765555 5899999998775422 22148999999999998885 9999999999974
No 12
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=94.81 E-value=0.2 Score=55.25 Aligned_cols=70 Identities=11% Similarity=0.206 Sum_probs=53.3
Q ss_pred cCCCccceeEEEeecccccc-CcEEEEEEeeccccc-------------cccCCcceEEEEeeccCCCCceecCCceEEE
Q psy8415 246 HNSPCWSEIIRLAVPIERYQ-SSHIRLEYRHCSTRD-------------KADNKKLLGFSFARLMEPSGATLQDCQHELF 311 (1561)
Q Consensus 246 n~~P~w~EeIKi~LP~~~~~-~~HLlFtFrH~S~~~-------------k~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~ 311 (1561)
.++|.|+|.++..|-....+ .+.|-|+++-+.-+. .++.+.|+||+-++|++.+|+ |+.|.|.|.
T Consensus 56 ~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~~-Lr~G~~~L~ 134 (178)
T cd08399 56 TEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRFL-LRTGEYVLH 134 (178)
T ss_pred CCCccccccEECccccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcCCCc-eecCCEEEE
Confidence 45689999988887755554 579999988763211 011148999999999998885 999999999
Q ss_pred EEeec
Q psy8415 312 IYRCE 316 (1561)
Q Consensus 312 Vyk~d 316 (1561)
++...
T Consensus 135 ~W~~~ 139 (178)
T cd08399 135 MWQIS 139 (178)
T ss_pred EecCC
Confidence 99844
No 13
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=94.62 E-value=0.079 Score=56.13 Aligned_cols=78 Identities=19% Similarity=0.378 Sum_probs=55.4
Q ss_pred EEEEEEec-CCCccceeEEEeeccccccC-cEEEEEEeeccccccccC-CcceEEEEeeccCCCCceecCCceEEEEEee
Q psy8415 239 HSMIIYHH-NSPCWSEIIRLAVPIERYQS-SHIRLEYRHCSTRDKADN-KKLLGFSFARLMEPSGATLQDCQHELFIYRC 315 (1561)
Q Consensus 239 ~S~V~yHn-~~P~w~EeIKi~LP~~~~~~-~HLlFtFrH~S~~~k~~~-~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk~ 315 (1561)
.|.+...+ ..+.|+|.+...|+....+. +.|.|+.+.+....+... +.++|++-+||++.+|. |+.|.|.|.++..
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-L~~G~~~L~lW~~ 101 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-LRQGPQKLSLWPD 101 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB-BEEEEEEEE-EET
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc-ccCCCEEEEEEcC
Confidence 34444444 79999999999999766654 799999997765433210 07999999999998776 8899999999985
Q ss_pred cc
Q psy8415 316 EE 317 (1561)
Q Consensus 316 d~ 317 (1561)
+.
T Consensus 102 ~~ 103 (142)
T PF00792_consen 102 EE 103 (142)
T ss_dssp -T
T ss_pred CC
Confidence 54
No 14
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.14 E-value=0.085 Score=56.70 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=55.5
Q ss_pred cCCCccceeEEEeeccccc-cCcEEEEEEeeccccccccCCcceEEEEeeccCCCCceecCCceEEEEEeec
Q psy8415 246 HNSPCWSEIIRLAVPIERY-QSSHIRLEYRHCSTRDKADNKKLLGFSFARLMEPSGATLQDCQHELFIYRCE 316 (1561)
Q Consensus 246 n~~P~w~EeIKi~LP~~~~-~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk~d 316 (1561)
..++.|+|.|...+..... ..+.|-|+.+.++....++ +.++|++=+||++.+|. |+.|.+.|.++...
T Consensus 55 ~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~-~~~iG~~~~~lFd~~~~-L~~G~~~l~lW~~~ 124 (156)
T cd08380 55 STSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKK-EVPLGWVNVPLFDYKGK-LRQGMITLNLWPGK 124 (156)
T ss_pred CCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCc-ceEEEEEeEEeEcccCc-EecCCEEEeccCCc
Confidence 3578899999988775544 4589999999987654222 49999999999998885 99999999998643
No 15
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=94.08 E-value=0.25 Score=52.60 Aligned_cols=108 Identities=21% Similarity=0.327 Sum_probs=60.0
Q ss_pred eeEEeecccccCCCCCCCCceEEEEEEEcCCCccccCceeccCCCCCcceEEEEEEEecCCCccceeEEEeeccc-cccC
Q psy8415 188 LYLILERGEFEKGGKSTGKNIEVTVQVLDSDGTVLQNCLWGASGSDTSSEYHSMIIYHHNSPCWSEIIRLAVPIE-RYQS 266 (1561)
Q Consensus 188 LYVtl~~g~F~~~~k~~arNIeV~vevr~~dg~~i~~~I~~~sg~~~~s~~~S~V~yHn~~P~w~EeIKi~LP~~-~~~~ 266 (1561)
|.|.+++..+... +.-.|=-++|.|+|.+|..+....-...|......| | .|+-+|.|+-|.+ +-++
T Consensus 15 l~v~Iekiglkda--~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~y---v-------~f~~~v~lqtple~lp~G 82 (147)
T PF14186_consen 15 LSVFIEKIGLKDA--SQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNY---V-------HFNNTVHLQTPLEKLPKG 82 (147)
T ss_dssp EEEEEEEEE-TTG--GG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTE---E-------EEEEEEE-SS-GGGS-TT
T ss_pred EEEEEEEEEECCh--HHccCCeEEEEEECCCCCCccccccCCCcccccCCE---E-------EEcccEEEcCCHHHCCCc
Confidence 4455555554332 223345677889999999886554332221111111 1 2677888888865 4567
Q ss_pred cEEEEEEeeccccccccCCcceEEEEeeccCCCCceecCCceEEEEEe
Q psy8415 267 SHIRLEYRHCSTRDKADNKKLLGFSFARLMEPSGATLQDCQHELFIYR 314 (1561)
Q Consensus 267 ~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk 314 (1561)
+=++|.|+|...++++- ..-+|||+++=. |.+|.-.|.+|+
T Consensus 83 aai~fE~kH~K~kk~k~--S~kcw~fme~de-----i~~g~~~lely~ 123 (147)
T PF14186_consen 83 AAIFFEFKHYKPKKKKT--STKCWAFMELDE-----IKPGPVVLELYK 123 (147)
T ss_dssp -EEEEEEEEEETTTTCE--EEEEEEEEEGGG-------SEEEEE--EE
T ss_pred eEEEEEEEeeeccceee--eeeEEEEEEhhh-----ccCCceeeehhc
Confidence 89999999998776654 556999999822 778888999998
No 16
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.78 E-value=0.29 Score=53.11 Aligned_cols=93 Identities=20% Similarity=0.338 Sum_probs=66.4
Q ss_pred ceEEEEEEEcCCCccccCceeccCCCCCcceEEEEEEEecCCCccceeEEEeecccccc-CcEEEEEEeeccccccccCC
Q psy8415 207 NIEVTVQVLDSDGTVLQNCLWGASGSDTSSEYHSMIIYHHNSPCWSEIIRLAVPIERYQ-SSHIRLEYRHCSTRDKADNK 285 (1561)
Q Consensus 207 NIeV~vevr~~dg~~i~~~I~~~sg~~~~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~-~~HLlFtFrH~S~~~k~~~~ 285 (1561)
.+-|+++|.++ |+.+- .+..|.|.+. ...+.|+|.|++.|-....+ .+.|.||++.++... + .
T Consensus 31 ~l~V~~~l~~~-~~~L~--------~pv~T~~~~f----~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~--~-~ 94 (159)
T cd08397 31 DLFVTCQVFDD-GKPLT--------LPVQTSYKPF----KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG--K-A 94 (159)
T ss_pred CEEEEEEEEEC-CEecc--------CcEEccccCC----CCCcccceeEEcccchhcCChhheEEEEEEEecCCC--C-c
Confidence 47788888764 33321 1112333331 25688999998877755444 589999999887543 2 4
Q ss_pred cceEEEEeeccCCCCceecCCceEEEEEeec
Q psy8415 286 KLLGFSFARLMEPSGATLQDCQHELFIYRCE 316 (1561)
Q Consensus 286 ~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk~d 316 (1561)
.|||.+-+||++.+|+ |+.|.+.|.|+..+
T Consensus 95 ~~vg~~~~~lFd~~g~-Lr~G~~~l~lw~~~ 124 (159)
T cd08397 95 VPFGGTTLSLFNKDGT-LRRGRQKLRVWPDV 124 (159)
T ss_pred eEEEEEEEeeECCCCc-EecCCEEEEEEeCC
Confidence 8999999999998886 99999999999744
No 17
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.40 E-value=0.38 Score=52.91 Aligned_cols=69 Identities=14% Similarity=0.406 Sum_probs=54.1
Q ss_pred cCCCccceeEEEeecccccc-CcEEEEEEeecccccc-------------ccCCcceEEEEeeccCCCCceecCCceEEE
Q psy8415 246 HNSPCWSEIIRLAVPIERYQ-SSHIRLEYRHCSTRDK-------------ADNKKLLGFSFARLMEPSGATLQDCQHELF 311 (1561)
Q Consensus 246 n~~P~w~EeIKi~LP~~~~~-~~HLlFtFrH~S~~~k-------------~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~ 311 (1561)
...+.|+|.+...|+....+ .+-|-|+.+-++...+ +....|+|++=++|++.+|. |+.|.|.|.
T Consensus 54 ~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~-Lr~G~~~L~ 132 (173)
T cd08693 54 KNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQ-LKTGDHTLY 132 (173)
T ss_pred CCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcccch-hhcCCeEEE
Confidence 46799999999988866665 4799999997764211 00038999999999998775 889999999
Q ss_pred EEee
Q psy8415 312 IYRC 315 (1561)
Q Consensus 312 Vyk~ 315 (1561)
++..
T Consensus 133 lW~~ 136 (173)
T cd08693 133 MWTY 136 (173)
T ss_pred ecCC
Confidence 9874
No 18
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=92.78 E-value=0.52 Score=48.61 Aligned_cols=59 Identities=10% Similarity=0.155 Sum_probs=48.6
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|...+.+|.|+|++.+.++.......+|.|+.+|.... .+ ...+|.+.+||-.
T Consensus 51 ~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~-~~--~~~lG~~~i~l~~ 109 (134)
T cd00276 51 KKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSV-GR--NEVIGQVVLGPDS 109 (134)
T ss_pred eeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCC-CC--CceeEEEEECCCC
Confidence 45678888889999999999999998877889999999977643 23 3788999999865
No 19
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=92.54 E-value=1.2 Score=45.48 Aligned_cols=67 Identities=15% Similarity=0.366 Sum_probs=50.3
Q ss_pred ceEEEEEEEecC-CCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccCCCCceecCCceEEEEE
Q psy8415 236 SEYHSMIIYHHN-SPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLMEPSGATLQDCQHELFIY 313 (1561)
Q Consensus 236 s~~~S~V~yHn~-~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~Vy 313 (1561)
..++|-+..++. +|.|+|++.+.++.. ....|.|+.++.... ++ ..+|.+.+||-. |.+|.+.+++.
T Consensus 42 ~~~kT~~~~~~~~~P~w~e~f~f~~~~~--~~~~l~~~V~d~~~~--~~--~~iG~~~~~l~~-----l~~g~~~~~l~ 109 (128)
T cd00275 42 AKFKTKVVKNNGFNPVWNETFEFDVTVP--ELAFLRFVVYDEDSG--DD--DFLGQACLPLDS-----LRQGYRHVPLL 109 (128)
T ss_pred CcEeeeeecCCCcCCccCCcEEEEEeCC--CeEEEEEEEEeCCCC--CC--cEeEEEEEEhHH-----hcCceEEEEec
Confidence 457788877776 999999999988732 245789998877644 33 789999999875 55677766664
No 20
>KOG1924|consensus
Probab=92.50 E-value=0.41 Score=61.22 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=15.3
Q ss_pred ChhHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHc
Q psy8415 962 RKEMYLRYIYKLHDLHRPADNFTEAGFTLKLYADSL 997 (1561)
Q Consensus 962 r~emyiryv~~La~lH~~~~Ny~EAAl~L~lhA~ll 997 (1561)
++|=+-.+.++|-+.-. ++.+|--|+.+.+.+.
T Consensus 363 ~e~Dl~el~~rledir~---emDd~~~~f~lL~n~v 395 (1102)
T KOG1924|consen 363 KEDDLEELSGRLEDIRA---EMDDANEVFELLANTV 395 (1102)
T ss_pred hhhhHHHHHhHHHhhhh---hhccHHHHHHHHHHhh
Confidence 33344455555555433 3333444555555444
No 21
>KOG1924|consensus
Probab=92.14 E-value=0.84 Score=58.59 Aligned_cols=18 Identities=6% Similarity=0.134 Sum_probs=11.0
Q ss_pred CchHHHHHHHHHHHHHHH
Q psy8415 842 PENELRKATLNIFFDMME 859 (1561)
Q Consensus 842 ~~~~lR~~a~~il~~mm~ 859 (1561)
+++.++..++.+++.++.
T Consensus 246 r~pnmm~dvvkllsalci 263 (1102)
T KOG1924|consen 246 REPNMMTDVVKLLSALCI 263 (1102)
T ss_pred cCccHHHHHHHHHHHHhe
Confidence 455666666666665544
No 22
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.08 E-value=0.46 Score=52.12 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=53.9
Q ss_pred CCCccceeEEEeecccccc-CcEEEEEEeecccccc-------ccCCcceEEEEeeccCCCCceecCCceEEEEEeec
Q psy8415 247 NSPCWSEIIRLAVPIERYQ-SSHIRLEYRHCSTRDK-------ADNKKLLGFSFARLMEPSGATLQDCQHELFIYRCE 316 (1561)
Q Consensus 247 ~~P~w~EeIKi~LP~~~~~-~~HLlFtFrH~S~~~k-------~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk~d 316 (1561)
+.+.|+|.|...+.....+ .+-|.|+.+-++.... ++ +.++|++-+||++.+|. |+.|.|.|.++..+
T Consensus 61 ~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~-~~~lG~~~~~LFd~~~~-L~~G~~~L~lW~~~ 136 (171)
T cd04012 61 PRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMG-PEELGWVSLPLFDFRGV-LRQGSLLLGLWPPS 136 (171)
T ss_pred ccccccceEECccchhcCChhHEEEEEEEEEecCCcccccccccc-ceEEEEEeEeeEcchhh-hccCCEEEEeccCC
Confidence 5688999999888865555 4899999987765321 12 48999999999998785 88999999998743
No 23
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=91.44 E-value=1.2 Score=46.96 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=49.4
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
+..+|.|.-++.+|.|+|++.+.+|.+.....-|.|+.+|...-. + +..+|-..+++..
T Consensus 53 ~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~-~--~~~iG~v~l~~~~ 111 (138)
T cd08408 53 SKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMK-R--KEMIGWFSLGLNS 111 (138)
T ss_pred eeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCC-C--CcEEEEEEECCcC
Confidence 446888989999999999999999999999999999998876522 3 3788988888775
No 24
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=90.81 E-value=1.9 Score=44.74 Aligned_cols=59 Identities=8% Similarity=0.067 Sum_probs=47.7
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|...+.+|.|+|++.+.++.+......|.|+.++.... .++ ..+|.+.++|-.
T Consensus 50 ~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~-~~~--~~lG~~~i~l~~ 108 (133)
T cd08384 50 SKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIG-KSN--DYIGGLQLGINA 108 (133)
T ss_pred CCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCC-CCc--cEEEEEEEecCC
Confidence 44788899999999999999999998777788999998865432 222 789999999864
No 25
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=90.72 E-value=1.7 Score=40.69 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=45.6
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.+.....+|.|+|++.+.++.. ...+|.|.++|.+...+ ..++|-+.++|-.
T Consensus 32 ~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~~---~~~ig~~~~~l~~ 88 (102)
T cd00030 32 QKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFSK---DDFLGEVEIPLSE 88 (102)
T ss_pred ceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCCC---CceeEEEEEeHHH
Confidence 446777777778999999999999875 67789999888765432 3889999999876
No 26
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=90.17 E-value=2.9 Score=39.49 Aligned_cols=58 Identities=14% Similarity=0.294 Sum_probs=44.5
Q ss_pred cceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 235 SSEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 235 ~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
...++|.+...+.+|.|+|++.+.++... ..+|.|+.++..... . ...+|.+.+||.+
T Consensus 34 ~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~-~--~~~~G~~~~~l~~ 91 (101)
T smart00239 34 KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFG-R--DDFIGQVTIPLSD 91 (101)
T ss_pred cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCcc-C--CceeEEEEEEHHH
Confidence 44577778777779999999998887654 889999977665432 2 3889999999765
No 27
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=89.88 E-value=0.75 Score=47.15 Aligned_cols=61 Identities=16% Similarity=0.334 Sum_probs=49.8
Q ss_pred cceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeecccc-ccccCCcceEEEEeeccC
Q psy8415 235 SSEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTR-DKADNKKLLGFSFARLME 297 (1561)
Q Consensus 235 ~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~-~k~~~~~pfg~a~lPL~~ 297 (1561)
...++|.|..++.+|.|+|++.+.++.+.....+|.|+.++.... .+++ ..+|.+.++|-+
T Consensus 52 ~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~--~~iG~~~i~l~~ 113 (127)
T cd04030 52 STRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREK--KLLGQVLIDLSD 113 (127)
T ss_pred CceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCC--ceEEEEEEeccc
Confidence 456889999999999999999999998877888999998876432 1233 789999999865
No 28
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=89.80 E-value=0.88 Score=49.25 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=49.6
Q ss_pred cceEEEEEEEecCCCccceeEEEeeccc------cccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 235 SSEYHSMIIYHHNSPCWSEIIRLAVPIE------RYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 235 ~s~~~S~V~yHn~~P~w~EeIKi~LP~~------~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
...++|.|..++.+|.|+|++.+.|+.. .++++.|.|+.+|...--++| ..+|-+.++|-.
T Consensus 40 ~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D--~~iG~~~i~L~~ 106 (155)
T cd08690 40 PQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSD--KLLGTAQVKLEP 106 (155)
T ss_pred CceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCC--CeeEEEEEEccc
Confidence 3467899999999999999999999877 467888999988765322234 889999999876
No 29
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=89.64 E-value=1.6 Score=44.58 Aligned_cols=58 Identities=12% Similarity=0.236 Sum_probs=46.7
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|-|..++.+|.|+|++.+.+|........|.|+.++.... .++ ..+|-+.+||-+
T Consensus 52 ~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~-~~~--~~lG~~~i~l~~ 109 (124)
T cd08385 52 KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF-SKH--DLIGEVRVPLLT 109 (124)
T ss_pred ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC-CCC--ceeEEEEEecCc
Confidence 5688888999999999999999998777778999998865432 223 678999999865
No 30
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=89.58 E-value=0.94 Score=46.92 Aligned_cols=60 Identities=15% Similarity=0.252 Sum_probs=47.9
Q ss_pred cceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 235 SSEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 235 ~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
....+|.|.-++.+|.|+|++.+.||.+......|.|+.+|-..- +++ ..+|-+-+||-.
T Consensus 52 ~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~-~~~--~~lG~~~i~l~~ 111 (125)
T cd04029 52 QSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRF-GRN--TFLGEVEIPLDS 111 (125)
T ss_pred ccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCC-CCC--cEEEEEEEeCCc
Confidence 345688888888999999999999998888888999998876432 233 678888888764
No 31
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=89.29 E-value=2.6 Score=43.86 Aligned_cols=58 Identities=12% Similarity=0.293 Sum_probs=46.7
Q ss_pred eEEEEEEEecCCCccceeEEE-eeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRL-AVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi-~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..+|-|..++.+|.|+|++.+ .+|.+......|.|+.++...- +++ ..+|-+.+||-+
T Consensus 53 ~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~-~~d--~~lG~~~i~L~~ 111 (128)
T cd08388 53 KVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRY-SRD--DVIGEVVCPLAG 111 (128)
T ss_pred eeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCC-CCC--ceeEEEEEeccc
Confidence 357888899999999999999 7888877777899998876422 233 789999999975
No 32
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=89.13 E-value=2.1 Score=44.49 Aligned_cols=59 Identities=12% Similarity=0.332 Sum_probs=49.7
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|..+..+|.|+|++.+.+|.+......|.|+..|... .+++ ..+|-+=++|-+
T Consensus 52 ~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~-~~~~--~~lG~~~i~L~~ 110 (124)
T cd08680 52 CLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP-DQQE--ECLGGAQISLAD 110 (124)
T ss_pred ceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC-CCce--eEEEEEEEEhhh
Confidence 4678889999999999999999999999999999999998752 2333 678888888765
No 33
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=89.00 E-value=1.4 Score=45.57 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=43.6
Q ss_pred cceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccc------cccCCcceEEEEeecc
Q psy8415 235 SSEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRD------KADNKKLLGFSFARLM 296 (1561)
Q Consensus 235 ~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~------k~~~~~pfg~a~lPL~ 296 (1561)
...++|-|...+.+|.|+|++.+.|+. ..=|.|+.++..+.. .++ .++|=|.+.|=
T Consensus 30 ~~~~KTk~i~~TlnPvWnE~F~i~l~~----s~~L~~~v~d~~~~~~~~d~~~~d--~~~G~g~i~Ld 91 (118)
T cd08686 30 VKKAKTRVCRDTTEPNWNEEFEIELEG----SQTLRILCYEKCYSKVKLDGEGTD--AIMGKGQIQLD 91 (118)
T ss_pred ceeeeeeeecCCCCCccceEEEEEeCC----CCEEEEEEEEcccccccccccCcc--cEEEEEEEEEC
Confidence 456788899999999999999999973 448899999875322 223 88888888873
No 34
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=88.98 E-value=1.8 Score=44.61 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=46.1
Q ss_pred ceEEEEEEEecCCCccceeEEEeecc---ccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPI---ERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~---~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|-|...+.+|.|+|++-..+|. +......|.|+.+|..... ++ ..+|.+.+||-.
T Consensus 31 ~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~-~d--~~iG~~~i~l~~ 92 (126)
T cd08682 31 EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG-LD--KFLGQVSIPLND 92 (126)
T ss_pred eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC-CC--ceeEEEEEEHHH
Confidence 35789999999999999999988887 3345678999988774322 23 689999999865
No 35
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=88.86 E-value=3.2 Score=42.28 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=47.5
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..+|.|..++.+|.|+|++.+.+|........|.|+.+|.... ++ ...+|-+-+||-+
T Consensus 51 ~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~-~~--~~~iG~~~i~L~~ 108 (123)
T cd08390 51 SLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRF-SR--HCIIGHVLFPLKD 108 (123)
T ss_pred ceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcC-CC--CcEEEEEEEeccc
Confidence 3578899999999999999999998877778999998876532 22 3789999999865
No 36
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=87.57 E-value=1.1 Score=46.97 Aligned_cols=64 Identities=11% Similarity=0.183 Sum_probs=49.4
Q ss_pred CCCCcceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 231 GSDTSSEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 231 g~~~~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
|.......+|.|..++.+|.|+|++.+.+|.+......|.|+.++..... ++ ..+|-..+..+.
T Consensus 46 ~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~-~~--~~iG~~~l~~~~ 109 (135)
T cd08410 46 GLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKS-SN--DFIGRIVIGQYS 109 (135)
T ss_pred CCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCC-CC--cEEEEEEEcCcc
Confidence 33333457788888899999999999999988888889999988765432 23 788888777665
No 37
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=87.52 E-value=0.93 Score=47.36 Aligned_cols=59 Identities=14% Similarity=0.269 Sum_probs=48.3
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|...+.+|.|+|++.+.+|.+......|.|+.++.... .++ ..+|-+.+|+-.
T Consensus 52 ~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~-~~~--~~lG~~~i~~~~ 110 (136)
T cd08405 52 EKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRL-SRN--DLIGKIYLGWKS 110 (136)
T ss_pred ccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCC-CCC--cEeEEEEECCcc
Confidence 45788888999999999999999998877788999998876532 223 679999999876
No 38
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=86.76 E-value=1.1 Score=46.46 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=47.8
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|-|..++.+|.|+|++.+.++.+.....-|.|+.++...- .++ ..+|-+-+||-+
T Consensus 53 ~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~-~~~--~~iG~~~i~L~~ 111 (125)
T cd08393 53 GKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSL-GRN--SFLGEVEVDLGS 111 (125)
T ss_pred ccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCC-CCC--cEeEEEEEecCc
Confidence 45688899999999999999999998878888899998876432 222 688999888765
No 39
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=86.45 E-value=1.5 Score=45.80 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=49.4
Q ss_pred cceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 235 SSEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 235 ~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
....+|-|.-++.+|.|+|++...+|.+.....-|.|+..|...- ++ ...+|-+-+||-+
T Consensus 52 ~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~-~~--~~~lG~~~i~L~~ 111 (128)
T cd08392 52 NSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTL-KR--RVFLGEVLIPLAD 111 (128)
T ss_pred cceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCC-cC--cceEEEEEEEcCC
Confidence 346688899999999999999999999888889999998876532 22 3789999999865
No 40
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=86.04 E-value=1.7 Score=44.67 Aligned_cols=57 Identities=23% Similarity=0.222 Sum_probs=44.7
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|...+.+|.|+|++.+.++. ..+|.|+.++.....+.+ ...+|.+.+||-+
T Consensus 33 ~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~~~~-d~~lG~~~i~l~~ 89 (123)
T cd08382 33 QTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFKKKD-QGFLGCVRIRANA 89 (123)
T ss_pred cceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCCCCC-CceEeEEEEEHHH
Confidence 45788888888999999999999975 679999988765433221 2789999999875
No 41
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=86.02 E-value=1.4 Score=46.10 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=47.6
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|...+.+|.|+|++.+.+|.+.....+|.|+.++.... .++ ..+|.+.+||-.
T Consensus 52 ~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~-~~~--~~iG~~~i~~~~ 110 (136)
T cd08402 52 KKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRI-GKN--DPIGKVVLGCNA 110 (136)
T ss_pred ceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCC-CCC--ceeEEEEECCcc
Confidence 45678888889999999999999998878888999998876542 223 688999998854
No 42
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=85.84 E-value=5.1 Score=41.82 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=45.6
Q ss_pred cceEEEEEEEecCCCccceeEEEeecccc--ccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 235 SSEYHSMIIYHHNSPCWSEIIRLAVPIER--YQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 235 ~s~~~S~V~yHn~~P~w~EeIKi~LP~~~--~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
...++|.|..++.+|.|+|++.+.++... ....+|.|+.++.... +++ ..+|.+.+||-+
T Consensus 54 ~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~-~~d--~~iG~~~i~l~~ 115 (133)
T cd04009 54 VPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLL-GSN--DFEGEAFLPLND 115 (133)
T ss_pred ccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCC-CCC--cEeEEEEEeHHH
Confidence 45678889999999999999999998642 4567899987765432 223 678999998764
No 43
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=85.69 E-value=1.3 Score=46.32 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=48.6
Q ss_pred cceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 235 SSEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 235 ~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
...++|.|.-.+.+|.|+|++.+.+|.+.....+|.|+.++..... ++ ..+|.+.+++..
T Consensus 51 ~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~-~~--~~iG~~~~~~~~ 110 (136)
T cd08404 51 ISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVT-KN--EVIGRLVLGPKA 110 (136)
T ss_pred eeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCC-CC--ccEEEEEECCcC
Confidence 4457888888899999999999999988888899999988754322 22 789999998876
No 44
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=85.59 E-value=2.5 Score=43.23 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=51.2
Q ss_pred ceEEEEEEEecCCCccceeEEEe-eccccccCcEEEEEEeeccccccccCCcceEEEEeeccCCCCceecCCceEEE
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLA-VPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLMEPSGATLQDCQHELF 311 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~-LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~ 311 (1561)
..++|-|...+.+|.|+|++.+. ++.......+|.|+.++.... .+ ..+|.+.+||-+ +++++.+++-
T Consensus 52 ~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~--~~--~~iG~~~i~l~~----l~~~~~~~~~ 120 (123)
T cd04035 52 TKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF--GN--DFLGETRIPLKK----LKPNQTKQFN 120 (123)
T ss_pred CceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc--CC--eeEEEEEEEccc----CCCCcceEee
Confidence 45788888899999999999984 666666778999998876543 33 789999999864 3445555543
No 45
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=85.55 E-value=3 Score=43.26 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=44.6
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccc-cccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIE-RYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~-~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|...+.+|.|+|++...+|.+ ......|.|+.++-... .++ .++|-+-+||-+
T Consensus 38 ~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~-~~d--d~IG~~~l~l~~ 97 (120)
T cd08395 38 RKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFA-RDD--RLVGVTVLQLRD 97 (120)
T ss_pred cEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEeccc-CCC--CEEEEEEEEHHH
Confidence 357788886667999999999999965 45678899998765321 223 688999888764
No 46
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=84.19 E-value=7 Score=40.40 Aligned_cols=58 Identities=12% Similarity=0.247 Sum_probs=44.2
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|.-++.+|.|+|++.+.++... ...+|.|+.++... ..++ ..+|-+-+||-+
T Consensus 50 ~~~rT~v~~~~~~P~wne~f~~~~~~~~-~~~~l~v~v~d~~~-~~~~--~~iG~~~~~l~~ 107 (131)
T cd04026 50 TKQKTKTIKKTLNPVWNETFTFDLKPAD-KDRRLSIEVWDWDR-TTRN--DFMGSLSFGVSE 107 (131)
T ss_pred ceecceeecCCCCCCccceEEEeCCchh-cCCEEEEEEEECCC-CCCc--ceeEEEEEeHHH
Confidence 4578889899999999999999987544 35789999876532 2223 788999998754
No 47
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=84.17 E-value=4.9 Score=40.95 Aligned_cols=59 Identities=12% Similarity=0.226 Sum_probs=45.3
Q ss_pred ceEEEEEEEecCCCccceeEEEee-ccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAV-PIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~L-P~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|...+.+|.|+|++-+.+ +.+......|.|+.++.... +++ ..+|-+.+||-+
T Consensus 53 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~-~~~--~~iG~~~i~l~~ 112 (125)
T cd04031 53 SKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRD-GEN--DFLGEVVIDLAD 112 (125)
T ss_pred ccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCC-CCC--cEeeEEEEeccc
Confidence 456788899999999999999974 54556778999998875432 222 788999999864
No 48
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=83.93 E-value=4.7 Score=41.87 Aligned_cols=55 Identities=16% Similarity=0.340 Sum_probs=41.3
Q ss_pred ceEEEEEEEe-cCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeecc
Q psy8415 236 SEYHSMIIYH-HNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLM 296 (1561)
Q Consensus 236 s~~~S~V~yH-n~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~ 296 (1561)
..++|-|.+. +.+|.|+|++.+.++.. ..+|.|+.++-..-. ++ .++|.+-+||-
T Consensus 33 ~~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~d~~~-~d--d~iG~~~i~l~ 88 (121)
T cd04016 33 AVYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDERAFT-MD--ERIAWTHITIP 88 (121)
T ss_pred EEEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeCCCCc-CC--ceEEEEEEECc
Confidence 3568888876 58999999999998753 357889977543222 22 78999999995
No 49
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=83.07 E-value=2.2 Score=43.38 Aligned_cols=59 Identities=14% Similarity=0.231 Sum_probs=46.8
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|.-++.+|.|+|++...++.+......|.|+.+|.... +++ ..+|-+.+||-+
T Consensus 52 ~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~-~~~--~~iG~~~i~l~~ 110 (123)
T cd08521 52 SKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRF-GRN--TFLGEVEIPLDS 110 (123)
T ss_pred ceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCC-cCC--ceeeEEEEeccc
Confidence 45688888888999999999999998877788999997765422 222 688999999865
No 50
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=82.84 E-value=4.9 Score=37.21 Aligned_cols=51 Identities=20% Similarity=0.389 Sum_probs=38.8
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEE
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFS 291 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a 291 (1561)
..++|.+.....+|.|+|++.+.++...... |.|+.++.....+ + ..+|.+
T Consensus 34 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~--l~~~V~~~~~~~~-~--~~iG~~ 84 (85)
T PF00168_consen 34 TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS--LSFEVWDKDSFGK-D--ELIGEV 84 (85)
T ss_dssp EEEEECCBSSBSSEEEEEEEEEEESHGCGTE--EEEEEEEETSSSS-E--EEEEEE
T ss_pred eeeeeeeeeccccceeeeeeeeeeecccccc--eEEEEEECCCCCC-C--CEEEEE
Confidence 5588999999999999999999987766665 9999887665433 2 455543
No 51
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=82.29 E-value=2.3 Score=43.85 Aligned_cols=60 Identities=13% Similarity=0.272 Sum_probs=47.8
Q ss_pred cceEEEEEEEecCCCccceeEEEee-ccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 235 SSEYHSMIIYHHNSPCWSEIIRLAV-PIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 235 ~s~~~S~V~yHn~~P~w~EeIKi~L-P~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
....+|-|...+.+|.|+|++...+ |.+.....-|.|+.++..... ++ ..+|-+.+||-+
T Consensus 48 ~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~-~~--~~lG~~~i~l~~ 108 (122)
T cd08381 48 TTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLV-EN--EFLGGVCIPLKK 108 (122)
T ss_pred CCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCc-CC--cEEEEEEEeccc
Confidence 3467888888999999999999998 888888889999988764322 22 678888888864
No 52
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=82.16 E-value=13 Score=38.55 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=41.1
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeecc
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLM 296 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~ 296 (1561)
.++|.|..++.+|.|+|++.+.++ ...+|.|+.++-... +++ ..+|.+-++|-
T Consensus 35 ~~kT~v~~~t~~P~Wne~f~~~~~----~~~~l~~~V~d~~~~-~~~--~~iG~~~i~l~ 87 (125)
T cd04021 35 PKKTEVSKKTSNPKWNEHFTVLVT----PQSTLEFKVWSHHTL-KAD--VLLGEASLDLS 87 (125)
T ss_pred cEEeeeeCCCCCCccccEEEEEeC----CCCEEEEEEEeCCCC-CCC--cEEEEEEEEHH
Confidence 478888888999999999999886 357899997765432 222 78999999964
No 53
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=81.77 E-value=2.4 Score=43.61 Aligned_cols=60 Identities=13% Similarity=0.177 Sum_probs=45.3
Q ss_pred cceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 235 SSEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 235 ~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
....+|-|.-++.+|.|+|++...+|.+... +.|.|+.+|.....+. +..+|-+-+||-+
T Consensus 47 ~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~-~~l~v~V~~~~~~~~~--~~~lG~~~i~l~~ 106 (119)
T cd08685 47 RFRQKTSTVPDSANPLFHETFSFDVNERDYQ-KRLLVTVWNKLSKSRD--SGLLGCMSFGVKS 106 (119)
T ss_pred cceEeCccccCCCCCccccEEEEEcChHHhC-CEEEEEEECCCCCcCC--CEEEEEEEecHHH
Confidence 3456788888899999999999999877654 4688887765432222 2689999999875
No 54
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=81.34 E-value=2.6 Score=43.87 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=46.6
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|.-.+.+|.|+|++.+.+|.+......|.|+.++..... ++ ..+|.+.+|+..
T Consensus 51 ~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~-~~--~~IG~~~l~~~~ 109 (134)
T cd08403 51 KKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVG-HN--ELIGVCRVGPNA 109 (134)
T ss_pred ceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCC-CC--ceeEEEEECCCC
Confidence 446777877788999999999999988888888999988754322 23 789999998774
No 55
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=80.93 E-value=4.6 Score=40.62 Aligned_cols=56 Identities=21% Similarity=0.424 Sum_probs=43.7
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.|...+.+|.|+|++.+.++.. ...+|.|+.+|.... .++ ..+|-+-++|-+
T Consensus 33 ~~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~-~~~--~~iG~~~~~l~~ 88 (115)
T cd04040 33 VFKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRG-GKD--DLLGSAYIDLSD 88 (115)
T ss_pred ceeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCC-CCC--CceEEEEEEHHH
Confidence 36788888899999999999998854 567899998876532 233 679999999765
No 56
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=80.43 E-value=4.5 Score=41.03 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=44.1
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|..++.+|.|+|++.+.++ ....+|.|+.++.... .++ ..+|.+.+||-+
T Consensus 37 ~~~kT~~~~~~~~P~Wne~~~~~v~---~~~~~l~~~v~d~~~~-~~d--~~iG~~~~~l~~ 92 (124)
T cd04044 37 ELARTKVKKDTSNPVWNETKYILVN---SLTEPLNLTVYDFNDK-RKD--KLIGTAEFDLSS 92 (124)
T ss_pred cceEeeeecCCCCCcceEEEEEEeC---CCCCEEEEEEEecCCC-CCC--ceeEEEEEEHHH
Confidence 4478888899999999999999887 2467899998876533 233 789999999764
No 57
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=80.24 E-value=8.2 Score=39.40 Aligned_cols=56 Identities=21% Similarity=0.401 Sum_probs=42.7
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.+...+.+|.|+|++.+.++. ...+|.|+.++..... ++ ..+|.+.+||-.
T Consensus 33 ~~~kT~~~~~t~nP~Wne~f~f~v~~---~~~~l~~~v~D~d~~~-~~--~~iG~~~~~l~~ 88 (121)
T cd04042 33 TVYKSKTIYKNLNPVWDEKFTLPIED---VTQPLYIKVFDYDRGL-TD--DFMGSAFVDLST 88 (121)
T ss_pred EEEEeeeccCCCCCccceeEEEEecC---CCCeEEEEEEeCCCCC-CC--cceEEEEEEHHH
Confidence 35788888999999999999998753 2578999987653321 22 789999999854
No 58
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=80.04 E-value=4.6 Score=43.35 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=44.8
Q ss_pred CcceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 234 TSSEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 234 ~~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.....+|-|...+.+|.|+|++.+.++ ..+.-|.|+..|..-.-+++ ..+|-+-+||-+
T Consensus 65 ~~~k~KT~v~kktlnPvfNE~F~f~v~---l~~~~L~v~V~~d~~~~~~~--~~iG~~~i~L~~ 123 (146)
T cd04028 65 CIAKKKTKIARKTLDPLYQQQLVFDVS---PTGKTLQVIVWGDYGRMDKK--VFMGVAQILLDD 123 (146)
T ss_pred cccceeceecCCCCCCccCCeEEEEEc---CCCCEEEEEEEeCCCCCCCC--ceEEEEEEEccc
Confidence 356678999999999999999999998 46778889988532222222 678999988854
No 59
>KOG1586|consensus
Probab=79.79 E-value=9.1 Score=43.99 Aligned_cols=29 Identities=28% Similarity=0.156 Sum_probs=19.5
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHHcCc
Q psy8415 971 YKLHDLHRPADNFTEAGFTLKLYADSLSW 999 (1561)
Q Consensus 971 ~~La~lH~~~~Ny~EAAl~L~lhA~ll~W 999 (1561)
-+.|++|++.|+--+||-|++--+..|.-
T Consensus 58 lkaA~~h~k~~skhDaat~YveA~~cykk 86 (288)
T KOG1586|consen 58 LKAADLHLKAGSKHDAATTYVEAANCYKK 86 (288)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhhc
Confidence 45788888888866666666655555543
No 60
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=79.68 E-value=7.9 Score=41.43 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=42.9
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.|...+.+|.|+|++.+.+|.. ..+|.|+.++..... ++ ..+|.+.++|-.
T Consensus 34 ~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d~~~-~d--d~iG~a~i~l~~ 88 (145)
T cd04038 34 KVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKDTFS-KD--DSMGEAEIDLEP 88 (145)
T ss_pred EEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECCCCC-CC--CEEEEEEEEHHH
Confidence 57899999999999999999999854 678999988764322 22 678998887643
No 61
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=79.08 E-value=5 Score=41.63 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=48.8
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
...+|.|...+.+|.|+|++...+|.+..++..|.|+.++.-.-. ++ .++|=.-+||-+
T Consensus 47 ~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs-~~--d~IG~v~l~l~~ 105 (118)
T cd08677 47 KEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFS-RH--STLGELRLKLAD 105 (118)
T ss_pred cEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCC-CC--ceEEEEEEcccc
Confidence 466899999999999999999999999999999999998764322 22 678888888753
No 62
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=78.69 E-value=18 Score=36.90 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=44.9
Q ss_pred cceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeecccc---ccccCCcceEEEEeeccC
Q psy8415 235 SSEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTR---DKADNKKLLGFSFARLME 297 (1561)
Q Consensus 235 ~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~---~k~~~~~pfg~a~lPL~~ 297 (1561)
...++|-|...+.+|.|+|++.+.++.+. ..+|.|++++.-.. -.++ ..+|.+-+||-+
T Consensus 38 ~~~~kT~vi~~t~nP~wne~f~f~~~~~~--~~~l~~~V~d~d~~~~~~~~~--d~iG~~~i~l~~ 99 (120)
T cd04048 38 VEIGRTEVIKNNLNPDFVTTFTVDYYFEE--VQKLRFEVYDVDSKSKDLSDH--DFLGEAECTLGE 99 (120)
T ss_pred EEeccEeEeCCCCCCCceEEEEEEEEeEe--eeEEEEEEEEecCCcCCCCCC--cEEEEEEEEHHH
Confidence 45688999999999999999999876543 45899998876542 2233 788999998765
No 63
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=78.47 E-value=28 Score=41.11 Aligned_cols=51 Identities=22% Similarity=0.171 Sum_probs=41.0
Q ss_pred HHHhHHHHHHhhcCChhHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHcCcc
Q psy8415 948 CTVNLLNFYKNEINRKEMYLRYIYKLHDLHRPADNFTEAGFTLKLYADSLSWT 1000 (1561)
Q Consensus 948 ~tl~Ll~fyk~~~~r~emyiryv~~La~lH~~~~Ny~EAAl~L~lhA~ll~W~ 1000 (1561)
+..+..+.|+ .. +++-=++++.+-+++..+.|++..||-|+...|++|...
T Consensus 77 ~~~~Aa~~~k-~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 77 AYEEAANCYK-KG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ 127 (282)
T ss_dssp HHHHHHHHHH-HT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHH-hh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 5556677777 44 788888999999999999999999999999999988765
No 64
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=78.17 E-value=9.8 Score=41.41 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=45.5
Q ss_pred cceEEEEEEEecCCCccceeEEEe-eccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 235 SSEYHSMIIYHHNSPCWSEIIRLA-VPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 235 ~s~~~S~V~yHn~~P~w~EeIKi~-LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
...++|-|...+.+|.|+|++.+. ++.+......|.|+.++.... +++ ..+|-+.++|-.
T Consensus 63 ~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~-~~d--~~lG~v~i~l~~ 123 (162)
T cd04020 63 KSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKL-SSN--DFLGGVRLGLGT 123 (162)
T ss_pred CcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCC-CCC--ceEEEEEEeCCc
Confidence 346789999999999999999997 455566677899998876432 223 678888888754
No 65
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=77.92 E-value=4.7 Score=40.59 Aligned_cols=59 Identities=22% Similarity=0.392 Sum_probs=46.3
Q ss_pred ceEEEEEEEecCCCcc-ceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCW-SEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w-~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|...+.+|.| +|++.+.+|.......+|.|+.++..... ++ ..+|-+.++|-.
T Consensus 32 ~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~-~~--~~iG~~~~~l~~ 91 (110)
T cd08688 32 TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS-AN--DAIGKVYIDLNP 91 (110)
T ss_pred eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-CC--CceEEEEEeHHH
Confidence 4578888888899999 99999999987766779999988764322 22 678888888764
No 66
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=77.32 E-value=14 Score=37.11 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q psy8415 806 RVQMGFQILKVWSSLGEHKINFIPSMVGPFLEVTLVPENELRKATLNIFFDMMEC 860 (1561)
Q Consensus 806 R~~~a~ll~~~W~~Lg~~q~~fip~Lv~~iLe~cls~~~~lR~~a~~il~~mm~~ 860 (1561)
|..+-.-|..++-+||..=.+|++.++.|+|.+....+..+|-.|+..||.+.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~ 57 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV 57 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 3444445788888998877778899999999988889999999999999998764
No 67
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=77.31 E-value=12 Score=37.71 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=42.5
Q ss_pred eEEEEEEEecCCCccceeEEEe--eccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLA--VPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~--LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.+...+.+|.|+|++.+. .|.......+|.|+.++.... .++ ..+|-+-+||-+
T Consensus 33 ~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~-~~~--~~iG~~~i~l~~ 92 (111)
T cd04011 33 KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL-RSD--TLIGSFKLDVGT 92 (111)
T ss_pred eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc-ccC--CccEEEEECCcc
Confidence 4678888888999999999776 466666678999998764321 123 678888888654
No 68
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=76.86 E-value=7 Score=40.04 Aligned_cols=57 Identities=18% Similarity=0.227 Sum_probs=41.8
Q ss_pred EEEEEEEe-cCCCccceeEEEeecccc--ccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 238 YHSMIIYH-HNSPCWSEIIRLAVPIER--YQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 238 ~~S~V~yH-n~~P~w~EeIKi~LP~~~--~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
++|.|..+ ..+|.|+|++.+.++... ....+|.|..++.... +++ ..+|.+.+||-+
T Consensus 35 ~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~-~~~--~~lG~~~i~l~~ 94 (125)
T cd04051 35 QSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPS-LGD--KLIGEVRVPLKD 94 (125)
T ss_pred cccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCC-CCC--CcEEEEEEEHHH
Confidence 45666544 589999999999998653 3468899998765321 223 789999999975
No 69
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=76.84 E-value=5 Score=40.86 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=42.7
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|-|...+.+|.|+|++.+.++.. ....|.|+.++.... ++ ..+|-+-+||-+
T Consensus 36 ~~kT~vv~~t~nP~Wne~f~f~i~~~--~~~~l~v~v~d~d~~--~~--~~iG~~~~~l~~ 90 (119)
T cd04036 36 KKRTKTIKNSINPVWNETFEFRIQSQ--VKNVLELTVMDEDYV--MD--DHLGTVLFDVSK 90 (119)
T ss_pred cCccceecCCCCCccceEEEEEeCcc--cCCEEEEEEEECCCC--CC--cccEEEEEEHHH
Confidence 46788888889999999999988765 345799998876433 33 678999988854
No 70
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=76.39 E-value=19 Score=42.59 Aligned_cols=125 Identities=15% Similarity=0.096 Sum_probs=68.2
Q ss_pred hHHHHHHhhcCChhHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHcCccCCCC-CCCCC--CCCCCCCchhhhHHHHHH
Q psy8415 951 NLLNFYKNEINRKEMYLRYIYKLHDLHRPADNFTEAGFTLKLYADSLSWTSSAP-LINDP--MCQPNGAPEWYRKEQLYY 1027 (1561)
Q Consensus 951 ~Ll~fyk~~~~r~emyiryv~~La~lH~~~~Ny~EAAl~L~lhA~ll~W~~~~~-l~~~~--~~~~p~qt~~erKE~L~~ 1027 (1561)
+..+-|+ ..++.+-=.....+-++.|.+.++..+||-++...|..+.-.+... +..+. ..-|-..-.+.+--.++.
T Consensus 40 ~Aa~~fk-~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~ 118 (282)
T PF14938_consen 40 KAANCFK-LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLK 118 (282)
T ss_dssp HHHHHHH-HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHH-HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4444455 4555555555555666777777777777777666555543221000 00000 000000111223335777
Q ss_pred HHHHHHHcc-cchhhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHH
Q psy8415 1028 EIISYFDKG-KCWEKGIPLCKELADLYEKRLFDYKKLSNILQTQAQFCDNI 1077 (1561)
Q Consensus 1028 ~~i~~f~kg-~~wE~ai~l~keL~~~YE~~~~Dy~kLs~i~~~~a~lY~~I 1077 (1561)
++++.+++. +.+|.|++.|+.-+..|+.. -+-...++++.+.+.+|-..
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e-~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQE-GSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CChhhHHHHHHHHHHHHHHh
Confidence 888888887 88888888888888888887 46666677777777766543
No 71
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=76.35 E-value=24 Score=36.49 Aligned_cols=66 Identities=14% Similarity=0.071 Sum_probs=47.9
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccCCCCceecCCceEEEEE
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLMEPSGATLQDCQHELFIY 313 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~Vy 313 (1561)
.++|.|...+.+|.|+|++.+.+.. ....|.|+.++... .++ ..+|-+-++|-.. + ..+.+.+++.
T Consensus 36 ~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~i~V~d~~~--~~d--~~lG~~~~~l~~~-~---~~~~~~~~l~ 101 (126)
T cd04046 36 SVRSPVQKDTLSPEFDTQAIFYRKK---PRSPIKIQVWNSNL--LCD--EFLGQATLSADPN-D---SQTLRTLPLR 101 (126)
T ss_pred EEEeCccCCCCCCcccceEEEEecC---CCCEEEEEEEECCC--CCC--CceEEEEEecccC-C---CcCceEEEcc
Confidence 5789999999999999999886642 36789999887532 124 7899999998642 2 2344556664
No 72
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=76.02 E-value=11 Score=40.61 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=42.7
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccc-cccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRD-KADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~-k~~~~~pfg~a~lPL~~ 297 (1561)
.-++|.|.-...+|.|+|++.+.. +..-.+|-|+.++.+-.. ++.....+|...+|+-+
T Consensus 39 ~vaRT~v~~~~~nP~W~E~F~f~~---~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~ 98 (146)
T cd04013 39 LYARTTSKLKTDTLFWGEHFEFSN---LPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTD 98 (146)
T ss_pred EEEEEEEEcCCCCCcceeeEEecC---CCcccEEEEEEEEccCccccccCCcEEEEEEEEHHH
Confidence 446899998889999999999953 333478999987654322 11113899999999765
No 73
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=75.86 E-value=6 Score=40.50 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=42.9
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeecc
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLM 296 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~ 296 (1561)
.++|.|...+.+|.|+|++.+.++.. ...+|.|+.++..... ++ ..+|-+.++|-
T Consensus 37 ~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~~~-~~--~~iG~~~i~l~ 91 (126)
T cd04043 37 IAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSFVG-KH--DLCGRASLKLD 91 (126)
T ss_pred eecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCCCC-CC--ceEEEEEEecC
Confidence 47888888899999999999998775 4678999987665322 22 67888888874
No 74
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=75.74 E-value=6 Score=42.54 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=45.4
Q ss_pred ceEEEEEEEecCCCccceeEEEeec-------------cccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVP-------------IERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP-------------~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
...+|-|..++.+|.|+|++...++ .+......|.|+.+|.... +++ ..+|-+-+||-.
T Consensus 35 ~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~-~~d--dfLG~v~i~l~~ 106 (148)
T cd04010 35 DTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMG-GGD--VFLGEVRIPLRG 106 (148)
T ss_pred cccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCC-CCC--ceeEEEEEeccc
Confidence 4467888899999999999999984 4455667888888877543 233 789999999765
No 75
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=74.98 E-value=5.9 Score=40.53 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=45.4
Q ss_pred eEEEEEEEecCCCccceeEEEe-eccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLA-VPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~-LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.|...+.+|.|+|++.+. .|.+......|.|+.++.... .++ ..+|.+-+||-+
T Consensus 52 ~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~-~~~--~~iG~~~i~l~~ 110 (125)
T cd08386 52 KLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF-SRN--DPIGEVSLPLNK 110 (125)
T ss_pred ceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCC-cCC--cEeeEEEEeccc
Confidence 4689999999999999999986 677767778899998866432 222 678888888865
No 76
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=74.82 E-value=4.3 Score=41.99 Aligned_cols=58 Identities=14% Similarity=0.264 Sum_probs=46.7
Q ss_pred ceEEEEEEEecCCCccceeEEEe-eccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLA-VPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~-LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|-|.-. .+|.|+|++.+. ++.+.....-|.|+.+|.... .++ ..+|-+-+||-+
T Consensus 51 ~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~-~~~--~~lG~~~i~L~~ 109 (124)
T cd08389 51 QRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM-RKE--RLIGEKVVPLSQ 109 (124)
T ss_pred ceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc-ccC--ceEEEEEEeccc
Confidence 4567777655 999999999998 898889999999999887532 233 789999999875
No 77
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=74.78 E-value=5.3 Score=42.04 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=46.3
Q ss_pred cceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeec
Q psy8415 235 SSEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARL 295 (1561)
Q Consensus 235 ~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL 295 (1561)
....+|.|...+.+|.|+|++...+|.+.....-|.|+.+|..... ++ ..+|-.-++.
T Consensus 50 ~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~-~~--~~lG~v~ig~ 107 (137)
T cd08409 50 VKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVR-KS--KLLGRVVLGP 107 (137)
T ss_pred eeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCC-Cc--ceEEEEEECC
Confidence 3455788888999999999999999999899899999998876532 22 5677776664
No 78
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=74.70 E-value=5.5 Score=40.80 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=46.6
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|-|...+.+|.|+|++.+.+|.+.....+|.|+.++...- .++ ..+|.+-+||-+
T Consensus 52 ~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~-~~~--~~iG~~~i~l~~ 109 (124)
T cd08387 52 TKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF-SRD--ECIGVVELPLAE 109 (124)
T ss_pred cEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC-CCC--ceeEEEEEeccc
Confidence 4678888999999999999999998888888999998766322 122 678888888775
No 79
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=74.58 E-value=11 Score=39.62 Aligned_cols=56 Identities=14% Similarity=0.230 Sum_probs=42.9
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.|.+++.+|.|+|++.+.++. ....+|.|+.++.... .++ ..+|.+.+||-+
T Consensus 48 ~~kT~vi~~t~nP~Wne~f~f~v~~--~~~~~l~i~V~D~d~~-~~d--~~lG~~~i~l~~ 103 (136)
T cd08375 48 EHKTKVVSDTLNPKWNSSMQFFVKD--LEQDVLCITVFDRDFF-SPD--DFLGRTEIRVAD 103 (136)
T ss_pred eeeccccCCCCCCccCceEEEEecC--ccCCEEEEEEEECCCC-CCC--CeeEEEEEEHHH
Confidence 5889999999999999999988753 3457888887755322 223 789999999864
No 80
>KOG0212|consensus
Probab=74.07 E-value=72 Score=41.00 Aligned_cols=146 Identities=19% Similarity=0.318 Sum_probs=100.5
Q ss_pred HHHHHHhcccccccccccchHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCCC-----
Q psy8415 813 ILKVWSSLGEHKINFIPSMVGPFLEVTLVPENELRKATLNIFFDMMECEQRVHGNFKQVESELIDKLDILISDNK----- 887 (1561)
Q Consensus 813 l~~~W~~Lg~~q~~fip~Lv~~iLe~cls~~~~lR~~a~~il~~mm~~E~~~~~~f~~ve~eiI~~Ld~Lv~~g~----- 887 (1561)
+..+=-+||.....|...++.|++.++.-+...+|--|+..+|.+-.- .++.+-..-.++.+.|.++..+..
T Consensus 67 lAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv---~k~~v~~~Fn~iFdvL~klsaDsd~~V~~ 143 (675)
T KOG0212|consen 67 LAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKV---AKGEVLVYFNEIFDVLCKLSADSDQNVRG 143 (675)
T ss_pred HHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHH---hccCcccchHHHHHHHHHHhcCCcccccc
Confidence 344445678777779999999999988889999999999999988764 466777788899999999987532
Q ss_pred CcHHHHHHHHHHHH----------------hhhcCCCh-------hHH-----HhHHhHHHHHHHHHHHHhhccccccCC
Q psy8415 888 GDDEYRQLFNTILL----------------DRVQNEDP-------QWK-----ETGSAFISSVTRLLERLLDYRSVIQGD 939 (1561)
Q Consensus 888 gd~~~r~~f~~iL~----------------~~~~~~~~-------~l~-----~~~~~F~~~V~~ll~~Ll~~r~v~~~~ 939 (1561)
|.+-+-+++..|.. ++.-.-++ .|- .....|+.-+..|++-|+. +-+|
T Consensus 144 ~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~----~LsD 219 (675)
T KOG0212|consen 144 GAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFN----MLSD 219 (675)
T ss_pred HHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHH----HhcC
Confidence 33444445444422 22211110 010 1244677777788888865 4567
Q ss_pred CCcccchhHHHhHHHHHHhhcCChhH
Q psy8415 940 ENRDKRMSCTVNLLNFYKNEINRKEM 965 (1561)
Q Consensus 940 E~~d~rm~~tl~Ll~fyk~~~~r~em 965 (1561)
+.++=|..|..-|-+|+++-.++|+-
T Consensus 220 ~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 220 SSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 77777877877788898855556654
No 81
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=73.57 E-value=9.7 Score=38.52 Aligned_cols=57 Identities=11% Similarity=0.114 Sum_probs=42.5
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|-|.+.+.+|.|+|++.+.+.... ...-|.|..++.... +++ ..+|-+-+||-+
T Consensus 38 ~~kT~v~~~t~nPvWne~f~f~v~~~~-~~~~L~~~V~D~d~~-~~d--d~IG~~~l~L~~ 94 (108)
T cd04039 38 VFRTSWRRHTLNPVFNERLAFEVYPHE-KNFDIQFKVLDKDKF-SFN--DYVATGSLSVQE 94 (108)
T ss_pred eEeeeeecCCCCCcccceEEEEEeCcc-CCCEEEEEEEECCCC-CCC--cceEEEEEEHHH
Confidence 578999999999999999998875433 234688887766432 223 778999998865
No 82
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=73.54 E-value=8.2 Score=38.95 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=41.9
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.|..++.+|.|+|++.+.++.. ...+|.|..++...- ++ ..+|...+||-+
T Consensus 26 ~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~--~d--~~iG~~~v~L~~ 80 (111)
T cd04052 26 VYTTRVKKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRDR--HD--PVLGSVSISLND 80 (111)
T ss_pred EEEEeeeccCCCCccCCceEEEecCc--CCCEEEEEEEECCCC--CC--CeEEEEEecHHH
Confidence 46788888899999999999887632 467899987654432 33 789999999754
No 83
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=72.43 E-value=4.4 Score=41.22 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=34.4
Q ss_pred cCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 246 HNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 246 n~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.|+|++.|.+ + ...-+-+++|..+. +.-.|+|+-|++|-+
T Consensus 42 srnd~WnE~F~i~V--d--k~nEiel~VyDk~~----~~~~Pi~llW~~~sd 85 (109)
T cd08689 42 SRNDRWNEDFEIPV--E--KNNEEEVIVYDKGG----DQPVPVGLLWLRLSD 85 (109)
T ss_pred CCCCcccceEEEEe--c--CCcEEEEEEEeCCC----CeecceeeehhhHHH
Confidence 48999999999888 3 47788899886532 113899999999875
No 84
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=72.39 E-value=18 Score=36.50 Aligned_cols=56 Identities=25% Similarity=0.314 Sum_probs=42.9
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.|..++.+|.|+|++.+.++.. ...+|.|+.++.... .++ ..+|.+-++|-+
T Consensus 33 ~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~v~v~d~~~~-~~~--~~iG~~~~~l~~ 88 (116)
T cd08376 33 KYKSKVCSKTLNPQWLEQFDLHLFDD--QSQILEIEVWDKDTG-KKD--EFIGRCEIDLSA 88 (116)
T ss_pred eEecccccCCCCCceeEEEEEEecCC--CCCEEEEEEEECCCC-CCC--CeEEEEEEeHHH
Confidence 47888889999999999999988754 357899997765432 233 788999998853
No 85
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=72.22 E-value=3.5e+02 Score=36.33 Aligned_cols=77 Identities=19% Similarity=0.346 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhHHHHHHHHhhcCCCChhhhhHHHHHHHHHHhcCHHHHHHHHHHhCCcchHHHHHHHHHHHHHH--hhcC
Q psy8415 647 HDLELLCLSTLDMLIQTVLIIIDRATPVLGSLVACLIGLLQLLDESHYKKLWEELGDKKPLKDFLLRAFLVLRD--LVKQ 724 (1561)
Q Consensus 647 ~~v~~l~~~lL~~l~~t~~~l~~~~~~~~~~l~acll~il~~m~~~~~~~~~~~~~~~~dl~~fL~~~~~~~~~--ll~~ 724 (1561)
+|-+....++|+++...+++|... ...++++-+.++-+++ ++ =..+..||..+++..+.. ++.+
T Consensus 608 DDKqmaasGiL~T~~smiLSlen~-p~vLk~le~slypvi~---------Fi----lkn~i~dfy~Ea~dildg~tf~sk 673 (970)
T COG5656 608 DDKQMAASGILRTIESMILSLENR-PLVLKYLEVSLYPVIS---------FI----LKNEISDFYQEALDILDGYTFMSK 673 (970)
T ss_pred cHHHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHH---------HH----HhhhHHHHHHHHHHHHhhhhHHHH
Confidence 466667778888888888888765 3455555444443321 11 133455666666554442 2345
Q ss_pred CCCCCCcchhhhh
Q psy8415 725 DVFPPDWLVMRMV 737 (1561)
Q Consensus 725 ~~fP~~Wl~m~~~ 737 (1561)
+.+|.-|-..-++
T Consensus 674 eI~pimwgi~Ell 686 (970)
T COG5656 674 EIEPIMWGIFELL 686 (970)
T ss_pred HhhhhhhHHHHHH
Confidence 6778888765544
No 86
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=71.45 E-value=9.5 Score=39.26 Aligned_cols=57 Identities=11% Similarity=0.259 Sum_probs=43.2
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeecc
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLM 296 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~ 296 (1561)
.++|-|...+.+|.|+|++.+.++.......+|.|+.++..... ++ ..+|.+.++|=
T Consensus 27 ~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~-~d--~~iG~~~~~l~ 83 (127)
T cd08373 27 KKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG-RN--RLIGSATVSLQ 83 (127)
T ss_pred eeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC-CC--ceEEEEEEEhh
Confidence 36888888889999999999999755467789999988654321 22 67888888764
No 87
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=71.41 E-value=6.4 Score=41.60 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=45.8
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..-+|.|..++.+|.|+|++...+|.+......|.|+.++...-. ++ .++|-.-++...
T Consensus 52 ~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~-~~--~~iG~v~lg~~~ 110 (136)
T cd08406 52 SKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDG-KT--PNVGHVIIGPAA 110 (136)
T ss_pred cccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCC-CC--CeeEEEEECCCC
Confidence 345677888999999999999999999999999999988764322 22 567777776553
No 88
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=71.26 E-value=7.8 Score=39.94 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=43.6
Q ss_pred eEEEEEEEecCCCccceeEEEeecc-ccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPI-ERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~-~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.|...+.+|.|+|++.+.++. .......|.|+.++.....+++ ..+|-.-+||-.
T Consensus 33 ~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d--~~lG~v~i~l~~ 92 (127)
T cd04022 33 KKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR--SFLGRVRISGTS 92 (127)
T ss_pred EecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC--CeeeEEEEcHHH
Confidence 4678888889999999999999973 3344578999988754322123 678888888853
No 89
>KOG0212|consensus
Probab=70.46 E-value=3.3e+02 Score=35.40 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=38.4
Q ss_pred HHHHHHHhhcCcchhhhhccHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHhh
Q psy8415 390 IQEALNQALCLEGQELVKFLQDILDALFSMFSTEDGNSTMHSGLVFHVLTHIFSLLY 446 (1561)
Q Consensus 390 L~~~L~~l~~v~~~eiVKFL~~IlDaLF~IL~~~~~~s~~~~~lVF~aLV~Ii~lv~ 446 (1561)
+.+-|.-|-.+++.+++.||+.+||.||..|+ .+++++....=.+|-..+.-+.
T Consensus 187 lv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~Ls---D~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 187 LVSWLYVLDSVPDLEMISYLPSLLDGLFNMLS---DSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred HHHHHHHHhcCCcHHHHhcchHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHh
Confidence 44456778889999999999999999999992 3345555555555555444443
No 90
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=69.87 E-value=13 Score=38.20 Aligned_cols=56 Identities=20% Similarity=0.380 Sum_probs=43.5
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|-|...+.+|.|+|++.+.++.. ...|.|+.++..... ++ ..+|.+-+||-.
T Consensus 31 ~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~~-~~--~~lG~~~i~l~~ 86 (126)
T cd08678 31 QKYQSSTQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKKS-DS--KFLGLAIVPFDE 86 (126)
T ss_pred cEEEeEEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCCC-CC--ceEEEEEEeHHH
Confidence 347899999889999999999988643 567999988765432 23 788999999864
No 91
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=68.92 E-value=9.5 Score=39.98 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=42.0
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|-|...+.+|.|+|++.+.+ ........|.|+.++..... ++ ..+|.+.++|-.
T Consensus 60 ~~kT~vi~~t~nPvWNE~F~f~~-~~~~~~~~L~v~V~D~d~~s-~d--d~IG~~~i~l~~ 116 (127)
T cd04032 60 EKRTEVIWNNNNPRWNATFDFGS-VELSPGGKLRFEVWDRDNGW-DD--DLLGTCSVVPEA 116 (127)
T ss_pred cccCceecCCCCCcCCCEEEEec-ccCCCCCEEEEEEEeCCCCC-CC--CeeEEEEEEecC
Confidence 67888999899999999999863 12235678999977654332 23 689999998763
No 92
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=68.86 E-value=12 Score=37.67 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=42.8
Q ss_pred eEEEEEEEecCCCccceeEEEeeccc-cccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIE-RYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~-~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.|..++.+|.|+|++.+.++.. +....+|.|+.++...-. ++ ..+|.+-+||-+
T Consensus 38 ~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~-~d--d~lG~~~i~l~~ 96 (111)
T cd04041 38 LYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFT-AD--DRLGRVEIDLKE 96 (111)
T ss_pred cEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCC-CC--CcceEEEEEHHH
Confidence 46889999999999999999877643 335678999977654321 22 678888888754
No 93
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=68.21 E-value=10 Score=38.40 Aligned_cols=55 Identities=16% Similarity=0.295 Sum_probs=40.8
Q ss_pred eEEEEEEEe-cCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYH-HNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yH-n~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.+... +.+|.|+|++.+.++.. ....|.|+.++.... + + ..+|-+-++|-+
T Consensus 34 ~~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~-~-~--~~iG~~~~~l~~ 89 (118)
T cd08681 34 TKKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDDDKR-K-P--DLIGDTEVDLSP 89 (118)
T ss_pred ccccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeCCCC-C-C--cceEEEEEecHH
Confidence 356666655 57999999999999865 457899998875332 1 3 789999998864
No 94
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=68.03 E-value=19 Score=37.16 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=42.8
Q ss_pred cceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 235 SSEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 235 ~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.+.++|.|...+.+|.|+|++.+.++.. ..+|.|+.++.... .++ ..+|.+.+||-+
T Consensus 38 ~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~-~~~--~~iG~~~i~l~~ 94 (133)
T cd04033 38 IDSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDENRL-TRD--DFLGQVEVPLNN 94 (133)
T ss_pred ccceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECCCC-CCC--CeeEEEEEEHHH
Confidence 4567888888899999999999998753 46888887755322 122 678999998764
No 95
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=67.86 E-value=12 Score=38.75 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=40.1
Q ss_pred EEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 238 YHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 238 ~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.+|.+..++.+|.|+|++.+.++ +...|.|..++..... ++ ..+|-+.++|-+
T Consensus 49 ~kT~~~~~t~~P~Wne~f~~~v~----~~~~l~~~v~d~~~~~-~~--~~iG~~~i~l~~ 101 (132)
T cd04014 49 GKTSTKPKTNSPVWNEEFTTEVH----NGRNLELTVFHDAAIG-PD--DFVANCTISFED 101 (132)
T ss_pred eEEeEcCCCCCCCcceeEEEEcC----CCCEEEEEEEeCCCCC-CC--ceEEEEEEEhHH
Confidence 36677788999999999999986 4578999877653221 22 679999999853
No 96
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=65.76 E-value=14 Score=37.36 Aligned_cols=54 Identities=17% Similarity=0.299 Sum_probs=41.2
Q ss_pred EEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 238 YHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 238 ~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
++|-+..++.+|.|+|++.+.++. ...+|.|+.++.... .++ ..+|-+.+||-+
T Consensus 35 ~~T~~~~~t~nP~W~e~f~~~~~~---~~~~l~~~v~d~~~~-~~~--~~iG~~~~~l~~ 88 (119)
T cd08377 35 LQTHTIYKTLNPEWNKIFTFPIKD---IHDVLEVTVYDEDKD-KKP--EFLGKVAIPLLS 88 (119)
T ss_pred eecceecCCcCCccCcEEEEEecC---cCCEEEEEEEECCCC-CCC--ceeeEEEEEHHH
Confidence 678888889999999999988763 256888887755432 223 789999999865
No 97
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=65.69 E-value=15 Score=39.70 Aligned_cols=53 Identities=15% Similarity=0.383 Sum_probs=39.9
Q ss_pred EEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 238 YHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 238 ~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
++|.|...+.+|.|+|++.+.++. ...+|.|+.++...- . ...+|-+.+||-+
T Consensus 72 ~rT~v~~~~~nP~WnE~F~~~~~~---~~~~l~~~V~d~d~~--~--~~~IG~~~i~l~~ 124 (158)
T cd04015 72 ARTRVIENSENPVWNESFHIYCAH---YASHVEFTVKDNDVV--G--AQLIGRAYIPVED 124 (158)
T ss_pred eEEEEeCCCCCCccceEEEEEccC---CCCEEEEEEEeCCCc--C--CcEEEEEEEEhHH
Confidence 578888889999999999987763 346899987754221 1 2689999999754
No 98
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=64.90 E-value=16 Score=37.31 Aligned_cols=56 Identities=13% Similarity=0.243 Sum_probs=42.2
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.|...+.+|.|+|++.+.++... ...|.|+.++.... .++ ..+|.+-+||-+
T Consensus 33 ~~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~~~v~d~~~~-~~~--~~iG~~~~~l~~ 88 (123)
T cd04025 33 TLETSVVKKSCYPRWNEVFEFELMEGA--DSPLSVEVWDWDLV-SKN--DFLGKVVFSIQT 88 (123)
T ss_pred EEeceeecCCCCCccCcEEEEEcCCCC--CCEEEEEEEECCCC-CCC--cEeEEEEEEHHH
Confidence 367888888999999999999998643 57899987764322 122 678999999854
No 99
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=64.58 E-value=19 Score=37.06 Aligned_cols=55 Identities=11% Similarity=0.196 Sum_probs=42.5
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.|..+..+|.|+|++-+.+|.. ..+|.|+.+|-... .++ ..+|.+-+||-+
T Consensus 35 ~~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~-~~~--~~iG~~~i~l~~ 89 (121)
T cd08401 35 VFRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVL-RRD--SVIGKVAIKKED 89 (121)
T ss_pred EEEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCC-CCC--ceEEEEEEEHHH
Confidence 37888999999999999999999853 35888887766532 223 779999999754
No 100
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=64.21 E-value=22 Score=35.63 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=31.2
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeecc
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCS 277 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S 277 (1561)
.++|.+..+ .+|.|+|++.+.+|........|.|..++..
T Consensus 31 ~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~ 70 (117)
T cd08383 31 VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKR 70 (117)
T ss_pred eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecc
Confidence 367778888 9999999999999976656677777765543
No 101
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=63.03 E-value=16 Score=36.78 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=42.5
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|..++.+|.|+|++.+.++.. ...+|.|+.++.... ++ ..+|.+-++|-+
T Consensus 39 ~~~kT~~~~~t~~P~W~e~f~~~v~~~--~~~~l~i~v~d~~~~--~~--~~iG~~~i~l~~ 94 (121)
T cd08391 39 QTFKSKVIKENLNPKWNEVYEAVVDEV--PGQELEIELFDEDPD--KD--DFLGRLSIDLGS 94 (121)
T ss_pred EeEEccccCCCCCCcccceEEEEeCCC--CCCEEEEEEEecCCC--CC--CcEEEEEEEHHH
Confidence 357888888999999999998877543 567899987765433 33 678988888754
No 102
>KOG1991|consensus
Probab=61.86 E-value=6e+02 Score=35.24 Aligned_cols=117 Identities=15% Similarity=0.290 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhhhhcccccccCCcccccchHHHHHHHHHHhHHHHHHHHhhcCCCChhhhhHHHHHHHHHHhcCHHH
Q psy8415 614 LKLCTEILSEILSFLYKKKRTCEVGGKVNNILHHDLELLCLSTLDMLIQTVLIIIDRATPVLGSLVACLIGLLQLLDESH 693 (1561)
Q Consensus 614 ~~lc~~iL~~iL~~L~~~~~~~~~~~~~~~~~~~~v~~l~~~lL~~l~~t~~~l~~~~~~~~~~l~acll~il~~m~~~~ 693 (1561)
+.||-.+....+..++......+ ..+|-+....++|+++..-+.++... .+.++++-..++-++..|-
T Consensus 584 ~eL~q~La~~F~k~l~~~~~~~~--------~~ddk~iaA~GiL~Ti~Til~s~e~~-p~vl~~le~~~l~vi~~iL--- 651 (1010)
T KOG1991|consen 584 VELCQNLAETFLKVLQTSEDEDE--------SDDDKAIAASGILRTISTILLSLENH-PEVLKQLEPIVLPVIGFIL--- 651 (1010)
T ss_pred HHHHHHHHHHHHHHHhccCCCCc--------cchHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHH---
Confidence 45665555555555654211111 34455555557787777666776654 3467777776666653332
Q ss_pred HHHHHHHhCCcchHHHHHHHHHHHHHHh--hcCCCCCCCcchhhhhhhHHHHHHHHHhhHH
Q psy8415 694 YKKLWEELGDKKPLKDFLLRAFLVLRDL--VKQDVFPPDWLVMRMVTNQVILTALGHLAPP 752 (1561)
Q Consensus 694 ~~~~~~~~~~~~dl~~fL~~~~~~~~~l--l~~~~fP~~Wl~m~~~~~~v~L~~L~~ls~~ 752 (1561)
.++..||..+++....++ ..+++=|.-|--+.++..--.=..++++.++
T Consensus 652 ----------~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~ 702 (1010)
T KOG1991|consen 652 ----------KNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDM 702 (1010)
T ss_pred ----------HHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 234567777777666654 3345667778776555333222234444444
No 103
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=61.41 E-value=38 Score=34.78 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=41.1
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.+.-++.+|.|+|++.+.++.. ...|.|+.++.... .++ ..+|.+-+||-+
T Consensus 34 ~~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~~~-~~d--~~IG~~~~~l~~ 89 (120)
T cd04045 34 VKGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYEKV-GKD--RSLGSVEINVSD 89 (120)
T ss_pred EeeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECCCC-CCC--CeeeEEEEeHHH
Confidence 346788888889999999998877542 35899997765432 223 689999999654
No 104
>KOG2171|consensus
Probab=59.03 E-value=7e+02 Score=35.10 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=27.8
Q ss_pred HHHHHHHHHhHHHHHHHHhhcCCCChhhhhHHHHHHHHHHhcCHHHHHHHH
Q psy8415 648 DLELLCLSTLDMLIQTVLIIIDRATPVLGSLVACLIGLLQLLDESHYKKLW 698 (1561)
Q Consensus 648 ~v~~l~~~lL~~l~~t~~~l~~~~~~~~~~l~acll~il~~m~~~~~~~~~ 698 (1561)
.+....+.++-.+.+.-+.|.+...+....++..++.++--++++ ..|.
T Consensus 264 ~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D--~ew~ 312 (1075)
T KOG2171|consen 264 SIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD--DEWS 312 (1075)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc--hhhc
Confidence 334444444555555556665554456667777777776655555 4454
No 105
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=58.97 E-value=22 Score=37.80 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=45.3
Q ss_pred CcceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeecc
Q psy8415 234 TSSEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLM 296 (1561)
Q Consensus 234 ~~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~ 296 (1561)
....-+|.|..++.+|.|+|++...+|.+.....-|.|+..+-.... ++ ..+|=.-+++.
T Consensus 52 k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~-~~--d~iG~v~lg~~ 111 (138)
T cd08407 52 KLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPG-QS--LPLGRCSLGLH 111 (138)
T ss_pred ccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCc-Cc--ceeceEEecCc
Confidence 34556888999999999999999999999998889999987654322 22 45555555554
No 106
>KOG2956|consensus
Probab=58.11 E-value=3.2e+02 Score=34.87 Aligned_cols=150 Identities=16% Similarity=0.143 Sum_probs=79.8
Q ss_pred HHHHhhHHHHHhhhhH----------HHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q psy8415 532 TFKSGWVTLNRDYQLI----------LEVAKFASDMLECLGKREAQPLLTKAKLECIKNLVSGKLFSEDESRSYLLARIC 601 (1561)
Q Consensus 532 ~al~~~a~~l~dL~~v----------~ev~~li~~fi~s~~~~~~~~~L~~~KL~~i~~iv~~~Lf~~~e~R~~Llp~~~ 601 (1561)
.--|||+.+|-.++.+ ..-++++...+.+= +.+|..+=-..|..+.+-.-=.+++.-+..-..++
T Consensus 322 vWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q-----~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~ 396 (516)
T KOG2956|consen 322 VWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ-----PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCL 396 (516)
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhc-----hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 3456777777777766 23445555555553 23333333333333332222223444444444555
Q ss_pred HHHHHHhcchhhHHHHHHHHH-------H---HHHhhhhcccccccCCcccccchHHHHHHHHHHhHHHHHHHHhhcCCC
Q psy8415 602 KHLRLHLAHRDELKLCTEILS-------E---ILSFLYKKKRTCEVGGKVNNILHHDLELLCLSTLDMLIQTVLIIIDRA 671 (1561)
Q Consensus 602 ~~l~~hl~~~~~~~lc~~iL~-------~---iL~~L~~~~~~~~~~~~~~~~~~~~v~~l~~~lL~~l~~t~~~l~~~~ 671 (1561)
+.++.|+.-..-.-+|--|++ . ++..+.. +...+.+..++..+.|.+++++-+..
T Consensus 397 ~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e------------~l~~EeL~~ll~diaP~~iqay~S~S--- 461 (516)
T KOG2956|consen 397 TTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFE------------RLSAEELLNLLPDIAPCVIQAYDSTS--- 461 (516)
T ss_pred HHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHh------------hcCHHHHHHhhhhhhhHHHHHhcCch---
Confidence 566666543222222222222 1 1122211 12355566666677777777765533
Q ss_pred ChhhhhHHHHHHHHHHhcCHHHHHHHHHHh
Q psy8415 672 TPVLGSLVACLIGLLQLLDESHYKKLWEEL 701 (1561)
Q Consensus 672 ~~~~~~l~acll~il~~m~~~~~~~~~~~~ 701 (1561)
+.+-...|-|+.+|+..+..+.+.-|++.+
T Consensus 462 S~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 462 STVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred HHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 345567888999999999977777788777
No 107
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=58.07 E-value=56 Score=33.77 Aligned_cols=56 Identities=14% Similarity=0.284 Sum_probs=40.6
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeecccc--c--------cccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTR--D--------KADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~--~--------k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.+...+.+|.|+|++.+.+.. ...+|.|+.++.... + .+ ...+|.+.+||-.
T Consensus 34 ~~kT~~v~~t~~P~Wne~f~f~~~~---~~~~l~i~v~d~d~~~~~~~~~~~~~~~--~~~iG~~~i~l~~ 99 (127)
T cd04027 34 KKRTKTIPQNLNPVWNEKFHFECHN---SSDRIKVRVWDEDDDIKSRLKQKFTRES--DDFLGQTIIEVRT 99 (127)
T ss_pred eeecceecCCCCCccceEEEEEecC---CCCEEEEEEEECCCCcccccceeccccC--CCcceEEEEEhHH
Confidence 3577788889999999999987642 246899998875431 0 12 3788999988764
No 108
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=57.71 E-value=20 Score=35.64 Aligned_cols=54 Identities=22% Similarity=0.291 Sum_probs=40.6
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|..++.+|.|+|++.+.++.. ....|.|+.+... + + ..+|.+.+||-+
T Consensus 32 ~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~v~v~d~~---~-~--~~iG~~~i~l~~ 85 (105)
T cd04050 32 TTQKSKVKERTNNPVWEEGFTFLVRNP--ENQELEIEVKDDK---T-G--KSLGSLTLPLSE 85 (105)
T ss_pred EEEeCccccCCCCCcccceEEEEeCCC--CCCEEEEEEEECC---C-C--CccEEEEEEHHH
Confidence 457888888999999999999998752 3457878765432 1 3 678999998863
No 109
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=56.37 E-value=4.5e+02 Score=32.08 Aligned_cols=29 Identities=7% Similarity=0.153 Sum_probs=26.2
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHH
Q psy8415 834 PFLEVTLVPENELRKATLNIFFDMMECEQ 862 (1561)
Q Consensus 834 ~iLe~cls~~~~lR~~a~~il~~mm~~E~ 862 (1561)
.|+++-.++.+++|=+|..-++.+|-.+|
T Consensus 403 ~im~L~nh~d~~VkfeAl~a~q~~i~~~~ 431 (432)
T COG5231 403 IIMNLINHDDDDVKFEALQALQTCISSEW 431 (432)
T ss_pred HHHHHhcCCCchhhHHHHHHHHHHHhhhc
Confidence 57788889999999999999999998877
No 110
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=54.94 E-value=43 Score=30.97 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHhh
Q psy8415 1024 QLYYEIISYFDKGKCWEKGIPLCKELADLYEKRLFDYKKLSNILQTQAQFCDNILN 1079 (1561)
Q Consensus 1024 ~L~~~~i~~f~kg~~wE~ai~l~keL~~~YE~~~~Dy~kLs~i~~~~a~lY~~I~~ 1079 (1561)
..|..+...+..-+.|+.|++.|+..+...+..--+...++.++..++.+|....+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~ 61 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD 61 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC
Confidence 35677888888999999999999999999555433455679999999999877544
No 111
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=54.23 E-value=29 Score=37.66 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=42.5
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|...+.+|.|+|++.+.++. .....|.|+.++.. + ..+|-+.+||-+
T Consensus 89 ~~~kT~v~~~tlnP~WnE~F~f~v~~--~~~~~L~i~V~D~d-----d--~~IG~v~i~l~~ 141 (153)
T cd08676 89 SIKVTEVKPQTLNPVWNETFRFEVED--VSNDQLHLDIWDHD-----D--DFLGCVNIPLKD 141 (153)
T ss_pred ccEecceecCCCCCccccEEEEEecc--CCCCEEEEEEEecC-----C--CeEEEEEEEHHH
Confidence 45789999999999999999998853 24678999987654 4 688999999864
No 112
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=52.35 E-value=2.4e+02 Score=31.06 Aligned_cols=152 Identities=17% Similarity=0.247 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhcccccccccccchH----HHHHHcCCCchHHHHHHHHHHHHHHHHHHhhcCC
Q psy8415 792 DVKREKIIEKYGDMRVQMGFQILKVWSSLGEHKINFIPSMVG----PFLEVTLVPENELRKATLNIFFDMMECEQRVHGN 867 (1561)
Q Consensus 792 ~~kR~ai~~~~gD~R~~~a~ll~~~W~~Lg~~q~~fip~Lv~----~iLe~cls~~~~lR~~a~~il~~mm~~E~~~~~~ 867 (1561)
+.-|..++...||+=.+- |.++. .+..+-..+.+.+|+.|+-+|-.++.. +
T Consensus 2 ~~vR~n~i~~l~DL~~r~-------------------~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~------d 56 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRY-------------------PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE------D 56 (178)
T ss_pred HHHHHHHHHHHHHHHHhC-------------------cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc------C
Confidence 345666777777764431 33333 344444467889999999999988875 5
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhhhcCCChhHHHhHHhHHHHHHHHHHHHhhccccccC-CCCcccch
Q psy8415 868 FKQVESELIDKLDILISDNKGDDEYRQLFNTILLDRVQNEDPQWKETGSAFISSVTRLLERLLDYRSVIQG-DENRDKRM 946 (1561)
Q Consensus 868 f~~ve~eiI~~Ld~Lv~~g~gd~~~r~~f~~iL~~~~~~~~~~l~~~~~~F~~~V~~ll~~Ll~~r~v~~~-~E~~d~rm 946 (1561)
+.+++.++...+=.++.+ .++..|..-...+.+...+. ....|...+-+++-.|..+..-+.. ....++|+
T Consensus 57 ~ik~k~~l~~~~l~~l~D--~~~~Ir~~A~~~~~e~~~~~------~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~ 128 (178)
T PF12717_consen 57 MIKVKGQLFSRILKLLVD--ENPEIRSLARSFFSELLKKR------NPNIIYNNFPELISSLNNCYEHPVYGPLSREKRK 128 (178)
T ss_pred ceeehhhhhHHHHHHHcC--CCHHHHHHHHHHHHHHHHhc------cchHHHHHHHHHHHHHhCccccccccccCHHHHH
Confidence 566666664443333422 23444544444433322221 1233555555566666544321111 23333343
Q ss_pred hHHHhHHHHHHhhcCChhHHHHHHHHHHHHHccC
Q psy8415 947 SCTVNLLNFYKNEINRKEMYLRYIYKLHDLHRPA 980 (1561)
Q Consensus 947 ~~tl~Ll~fyk~~~~r~emyiryv~~La~lH~~~ 980 (1561)
+++.|+-+.+++++--...+.+|+..-...
T Consensus 129 ----~I~~fll~~i~~d~~~~~l~~kl~~~~~~~ 158 (178)
T PF12717_consen 129 ----KIYKFLLDFIDKDKQKESLVEKLCQRFLNA 158 (178)
T ss_pred ----HHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 444554444554555666666665544433
No 113
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=52.05 E-value=36 Score=35.94 Aligned_cols=53 Identities=15% Similarity=0.297 Sum_probs=38.2
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.|.- .++|.|+|++...+.- .+.+|.+.+..... -.| ..+|.+++||-+
T Consensus 32 k~kT~v~~-~~nP~WnE~F~F~~~~---~~~~L~v~V~dkd~--~~D--D~lG~v~i~L~~ 84 (127)
T cd08394 32 KSTTIAVR-GSQPCWEQDFMFEINR---LDLGLVIELWNKGL--IWD--TLVGTVWIPLST 84 (127)
T ss_pred EeEeeECC-CCCCceeeEEEEEEcC---CCCEEEEEEEeCCC--cCC--CceEEEEEEhHH
Confidence 45666664 4699999999999853 44558888765321 133 789999999975
No 114
>PLN03008 Phospholipase D delta
Probab=51.94 E-value=24 Score=47.43 Aligned_cols=54 Identities=9% Similarity=0.262 Sum_probs=39.3
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.|...+.+|.|+|++.+.++- ...+|.|+.+-- +.-. ..++|-+.+||-+
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah---~~s~L~f~VkD~---D~~g-aD~IG~a~IPL~~ 143 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAH---PFAYLEFQVKDD---DVFG-AQIIGTAKIPVRD 143 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecC---CCceEEEEEEcC---CccC-CceeEEEEEEHHH
Confidence 4588899999999999999999873 456999997631 1111 2577888777653
No 115
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=51.04 E-value=6.3e+02 Score=32.19 Aligned_cols=45 Identities=18% Similarity=0.487 Sum_probs=30.6
Q ss_pred CcchhhhhccHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHhhc
Q psy8415 400 LEGQELVKFLQDILDALFSMFSTEDGNSTMHSGLVFHVLTHIFSLLYD 447 (1561)
Q Consensus 400 v~~~eiVKFL~~IlDaLF~IL~~~~~~s~~~~~lVF~aLV~Ii~lv~d 447 (1561)
.+.++|-.+++++|..||+++ ...+. .-..-+-+|+..|+..+.|
T Consensus 15 ~~~~di~p~~~~ll~~Lf~~i-~~~~s--~ENeylMk~iMRvl~~~~e 59 (435)
T PF03378_consen 15 FSKADIQPFAQQLLQNLFALI-EKPGS--AENEYLMKCIMRVLSVLQE 59 (435)
T ss_dssp S-GGGTTCCHHHHHHHHHHHH-HTT-S--TC-HHHHHHHHHHHHHSTT
T ss_pred ECHHHhhhhHHHHHHHHHHHH-hcCCC--ccchHHHHHHHHHHHHhHH
Confidence 456788899999999999999 33221 1223466777777777665
No 116
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=50.91 E-value=53 Score=34.91 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=43.1
Q ss_pred ceEEEEEEEecCCCcc-ceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 236 SEYHSMIIYHHNSPCW-SEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w-~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..++|.|...+.+|.| +|++.+.++.+ .+|.|+.++.....+...+..+|..-+||-.
T Consensus 45 ~~~kT~v~~~tlnP~W~nE~f~f~v~~~----~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~ 103 (137)
T cd08691 45 QECRTSIVENTINPVWHREQFVFVGLPT----DVLEIEVKDKFAKSRPIIRRFLGKLSIPVQR 103 (137)
T ss_pred ceeeeeeEcCCCCCceEceEEEEEcCCC----CEEEEEEEecCCCCCccCCceEEEEEEEHHH
Confidence 3688999998999999 99999998643 4799998875332221002788999999764
No 117
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=49.50 E-value=3.1e+02 Score=30.97 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhcccccccccccc-hHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhhcCChHHHH--HHHHHHHHH
Q psy8415 805 MRVQMGFQILKVWSSLGEHKINFIPSM-VGPFLEVTLVPENELRKATLNIFFDMMECEQRVHGNFKQVE--SELIDKLDI 881 (1561)
Q Consensus 805 ~R~~~a~ll~~~W~~Lg~~q~~fip~L-v~~iLe~cls~~~~lR~~a~~il~~mm~~E~~~~~~f~~ve--~eiI~~Ld~ 881 (1561)
+|..+...|..+|...+ +.+.+ ...+...+.++.+.+|..++..+..++..-......+.... .+++..+-.
T Consensus 110 i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~ 184 (228)
T PF12348_consen 110 IREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVK 184 (228)
T ss_dssp HHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHH
Confidence 67777788999999876 11345 44555567788899999999988877765431223333322 455555666
Q ss_pred HhcCCC
Q psy8415 882 LISDNK 887 (1561)
Q Consensus 882 Lv~~g~ 887 (1561)
.++++.
T Consensus 185 ~l~D~~ 190 (228)
T PF12348_consen 185 LLSDAD 190 (228)
T ss_dssp HHTSS-
T ss_pred HCCCCC
Confidence 666554
No 118
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=49.50 E-value=28 Score=35.87 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=41.2
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
..+|-|...+.+|.|+|++-+.+. .....+|.|+.++.... ++ ..+|-+.+||-+
T Consensus 29 ~~kT~v~~~t~nP~Wne~F~f~~~--~~~~~~L~~~v~d~d~~--~~--~~lG~~~i~l~~ 83 (121)
T cd08378 29 KGSTKAIERTSNPEWNQVFAFSKD--RLQGSTLEVSVWDKDKA--KD--DFLGGVCFDLSE 83 (121)
T ss_pred cccccccCCCCCCccceEEEEEcC--CCcCCEEEEEEEeCCCC--cC--ceeeeEEEEhHh
Confidence 357778888899999999998864 23678999998866432 23 678888888765
No 119
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=49.24 E-value=46 Score=34.02 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=41.2
Q ss_pred eEEEEEEEe-cCCCccceeEEEeeccccc-cCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYH-HNSPCWSEIIRLAVPIERY-QSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yH-n~~P~w~EeIKi~LP~~~~-~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.|... +.+|.|+|++.+.++.... ...+|.|..++.... .++ ..+|.+.+||-+
T Consensus 34 ~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~-~~d--~~iG~~~i~l~~ 93 (124)
T cd04049 34 ERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF-SDD--DFIGEATIHLKG 93 (124)
T ss_pred eeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC-CCC--CeEEEEEEEhHH
Confidence 356777663 6899999999999886532 346888887765432 123 789999999753
No 120
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=48.74 E-value=44 Score=36.14 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=47.1
Q ss_pred EEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccCC--CCc---eecCCceEEEE
Q psy8415 238 YHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLMEP--SGA---TLQDCQHELFI 312 (1561)
Q Consensus 238 ~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~~--~g~---~l~DG~h~L~V 312 (1561)
.+|.|...+.+|.|+|++.+.+.... ....|.|+.++.-... ++ ..+|-+-+||-+- .|. +-.-|++=+-+
T Consensus 48 ~kT~v~~~t~nPvWNE~f~f~v~~p~-~~~~l~~~v~D~d~~~-~d--d~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~l 123 (151)
T cd04018 48 VKTSVKKNSYNPEWNEQIVFPEMFPP-LCERIKIQIRDWDRVG-ND--DVIGTHFIDLSKISNSGDEGFLPTFGPSFVNL 123 (151)
T ss_pred eecceEcCCCCCCcceEEEEEeeCCC-cCCEEEEEEEECCCCC-CC--CEEEEEEEeHHHhccCCccccCCccCceEEEe
Confidence 47888899999999999999864322 2357888876442211 23 7899999997631 221 12235566666
Q ss_pred Ee
Q psy8415 313 YR 314 (1561)
Q Consensus 313 yk 314 (1561)
|-
T Consensus 124 yg 125 (151)
T cd04018 124 YG 125 (151)
T ss_pred ec
Confidence 64
No 121
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=46.71 E-value=45 Score=33.98 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=42.5
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.|...+.+|.|+|++.+.++. ....+|.|+.++..... ++ ..+|-+-++|-+
T Consensus 36 ~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~~~~~-~~--~~lG~~~i~l~~ 91 (128)
T cd04024 36 RFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDKDRFA-GK--DYLGEFDIALEE 91 (128)
T ss_pred EEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEECCCCC-CC--CcceEEEEEHHH
Confidence 4788888899999999999887764 34578999977654321 22 678999998754
No 122
>KOG0905|consensus
Probab=45.86 E-value=99 Score=42.83 Aligned_cols=59 Identities=29% Similarity=0.355 Sum_probs=31.1
Q ss_pred CCCCCCCcCcCCCCCccccccccCCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCc
Q psy8415 1393 PADKPKPAHQRLPSKSSVHKRQSSDSGFSSCTAHMRNSWSETYEEAPPLPPRGFTPDKRSSGEPPSLHRRQDSI 1466 (1561)
Q Consensus 1393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1466 (1561)
++.+--|||++++ .|...| |+....++.|++- |-.|||+||+.+-|+ -||--+||.-|+
T Consensus 122 sgp~~~~~~~~~~-~~~~sk-~p~~~~v~~~~~~--------~~~P~p~Ppy~s~pg-----~pP~~s~~~~Sp 180 (1639)
T KOG0905|consen 122 SGPSLYPAPGSPG-GPEYSK-QPAAQSVSLLPDM--------YFVPPPLPPYTSVPG-----VPPQHSRRPQSP 180 (1639)
T ss_pred CCCcCCCCCCCCC-CcccCC-CccccccccCccc--------CcCCCCCCccccCCC-----CCCCCCCCCCCC
Confidence 3333344454444 233333 4555545555432 235789999988755 355555565553
No 123
>KOG0566|consensus
Probab=45.12 E-value=86 Score=42.51 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHhhccc---hhHHHHHHhhccCC
Q psy8415 410 QDILDALFSMFSTEDGNSTMHSGLVFHVLTHIFSLLYDSK---GLITSIQHCADYVS 463 (1561)
Q Consensus 410 ~~IlDaLF~IL~~~~~~s~~~~~lVF~aLV~Ii~lv~d~r---~Ll~s~~~y~~~~~ 463 (1561)
+..||.=|.-|. ++||. |+||++|.-.. .|-+.|++.+...+
T Consensus 295 q~aFdrHf~~L~------~~YG~------v~IVNLLgtk~gE~~Ls~~fk~hl~~s~ 339 (1080)
T KOG0566|consen 295 QPAFDRHFSKLR------EKYGP------VYIVNLLGTKEGEESLSEAFKRHLKLSP 339 (1080)
T ss_pred hHHHHHHHHHHH------HhcCc------EEEEEcccCcchHHHHHHHHHHHHhccC
Confidence 567777777772 34555 67788776533 77778887776544
No 124
>KOG1991|consensus
Probab=44.75 E-value=1.1e+03 Score=33.02 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=38.1
Q ss_pred chHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhhcCChH----------------HHHHHHHHHHHHHhcCCC-CcHHHH
Q psy8415 831 MVGPFLEVTLVPENELRKATLNIFFDMMECEQRVHGNFK----------------QVESELIDKLDILISDNK-GDDEYR 893 (1561)
Q Consensus 831 Lv~~iLe~cls~~~~lR~~a~~il~~mm~~E~~~~~~f~----------------~ve~eiI~~Ld~Lv~~g~-gd~~~r 893 (1561)
++..++=.-.++--=+|..|+.++-..-.-+|...++|. .|+.|...+|-.++++.. .++..+
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 444555444577777888888887544433333333222 366777778888887654 444333
Q ss_pred HH
Q psy8415 894 QL 895 (1561)
Q Consensus 894 ~~ 895 (1561)
..
T Consensus 543 ~h 544 (1010)
T KOG1991|consen 543 AH 544 (1010)
T ss_pred hh
Confidence 33
No 125
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=44.62 E-value=65 Score=33.20 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=40.0
Q ss_pred EEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 238 YHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 238 ~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
++|.+...+.+|.|+|++-+.+. ......|.|+.++.... .++ ..+|.+.++|-+
T Consensus 36 ~kT~~v~~t~nP~Wne~f~f~~~--~~~~~~L~~~V~d~d~~-~~d--d~iG~~~i~l~~ 90 (124)
T cd04037 36 DRDNYIPNTLNPVFGKMFELEAT--LPGNSILKISVMDYDLL-GSD--DLIGETVIDLED 90 (124)
T ss_pred ceeeEEECCCCCccceEEEEEec--CCCCCEEEEEEEECCCC-CCC--ceeEEEEEeecc
Confidence 56777788999999999988653 23457899998765322 122 788999998865
No 126
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=44.04 E-value=51 Score=34.77 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=43.2
Q ss_pred eEEEEEEEecCCCccceeEEEeeccc-------------cccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIE-------------RYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~-------------~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|.|...+.+|.|+|++.+.++.. .....-|.|+.++.... .+ ...+|-+.+||-+
T Consensus 35 ~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~-~~--~~~IG~~~i~l~~ 105 (137)
T cd08675 35 TKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMV-SG--DDFLGEVRIPLQG 105 (137)
T ss_pred eeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcC-cC--CcEEEEEEEehhh
Confidence 46788888899999999999988753 34667788887766533 22 2778999998664
No 127
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=43.11 E-value=97 Score=32.37 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=35.2
Q ss_pred eEEEEEEEecCCCccceeEEEee---c---ccccc-CcEEEEEEeeccccccccCCcceEEEEe
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAV---P---IERYQ-SSHIRLEYRHCSTRDKADNKKLLGFSFA 293 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~L---P---~~~~~-~~HLlFtFrH~S~~~k~~~~~pfg~a~l 293 (1561)
.++|.|...+.+|.|+|++.+.+ + .+... ..+|.|+..+.... +++ ..+|-+.+
T Consensus 34 ~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~-~~d--~~iG~~~i 94 (135)
T cd04017 34 SQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSV-GKD--EFLGRSVA 94 (135)
T ss_pred eeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCC-CCC--ccceEEEe
Confidence 57889999999999999998863 2 12222 25688887654321 222 56777765
No 128
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=42.57 E-value=66 Score=32.95 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=38.5
Q ss_pred EEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeec
Q psy8415 238 YHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARL 295 (1561)
Q Consensus 238 ~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL 295 (1561)
++|-|...+.+|.|+|++.+.++.. ..+|.|..++-... .++ ..+|-+.+++
T Consensus 35 ~kT~v~~~t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~~~-~~d--~~iG~~~~~~ 86 (121)
T cd04054 35 IRTATVWKTLNPFWGEEYTVHLPPG---FHTVSFYVLDEDTL-SRD--DVIGKVSLTR 86 (121)
T ss_pred eeeeeEcCCCCCcccceEEEeeCCC---CCEEEEEEEECCCC-CCC--CEEEEEEEcH
Confidence 6788888899999999999988642 36888886654322 122 6688888885
No 129
>KOG1785|consensus
Probab=38.51 E-value=76 Score=38.84 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=0.0
Q ss_pred CCCCCCcCcCCCCCccccccccCCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCC
Q psy8415 1394 ADKPKPAHQRLPSKSSVHKRQSSDSGFSSCTAHMRNSWSETYEEAPPLPPRGFTPDKRSSGEPPSLHRRQDSISQRDSSY 1473 (1561)
Q Consensus 1394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1473 (1561)
++++.|.-+.|| -++||+|||.-.--+ .-+ |+-++..-+.+..-..-
T Consensus 470 ~~p~~p~~~~~p------------------------------ls~PPlPPr~dl~~~-~l~--~~~~s~~~~~~k~l~~v 516 (563)
T KOG1785|consen 470 ASPSIPSVDEPP------------------------------LSLPPLPPRLDLTLD-TLN--SSQTSSSGVNIKELENV 516 (563)
T ss_pred ccCCCCccccCC------------------------------CCCCCCCCCcccccc-ccC--CCCCCCCCcchhhhhcc
Q ss_pred CCcccccccccccCcccccccCCCCCCCCCCCCCCCCccccccccCCCccccccccc
Q psy8415 1474 SDNISVYEDCVVPNTSFLFSTGSTSPSSPCPPPLPPKVINSVVTSEETSHREVVTEN 1530 (1561)
Q Consensus 1474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1530 (1561)
-..+.-----+- ++-+.++.|||.|| +++.++--+||+.-.+|
T Consensus 517 ~~~g~~lp~~~~----------~qr~PpppaP~rpp----~~~a~~r~~rhp~~~t~ 559 (563)
T KOG1785|consen 517 ETSGKPLPAPPN----------PQRDPPPPAPPRPP----RLSASERQPRHPYTNTN 559 (563)
T ss_pred cccCCCCCCCCC----------cccCCCCCCCCCCC----CCCccccCCCCCcCCCC
No 130
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=37.76 E-value=1.3e+02 Score=31.66 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=39.8
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccc-----cccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRD-----KADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~-----k~~~~~pfg~a~lPL~~ 297 (1561)
.++|-|...+.+|.|+|++.+.+.. ....|-|+.+.-.... .++ ..+|-+-+||-.
T Consensus 36 ~~rTk~~~~~~nP~WnE~f~f~v~~---~~~~l~v~V~d~d~~~~~~~~~~d--d~lG~~~i~l~~ 96 (126)
T cd08379 36 WVRTRTVEDSSNPRWNEQYTWPVYD---PCTVLTVGVFDNSQSHWKEAVQPD--VLIGKVRIRLST 96 (126)
T ss_pred EeEcCcccCCCCCcceeEEEEEecC---CCCEEEEEEEECCCccccccCCCC--ceEEEEEEEHHH
Confidence 5688888999999999999998853 2347888866533210 123 778988888654
No 131
>PLN02228 Phosphoinositide phospholipase C
Probab=36.73 E-value=1.3e+02 Score=39.34 Aligned_cols=69 Identities=10% Similarity=0.172 Sum_probs=46.0
Q ss_pred ceEEEEEEEecCCCcc-ceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccCCCCceecCCceEEEEEe
Q psy8415 236 SEYHSMIIYHHNSPCW-SEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLMEPSGATLQDCQHELFIYR 314 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w-~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk 314 (1561)
..|+|-+...+-+|.| +|++...+ ...+-+-|+|+.+.-... .. ...+|.+-+||-. |+.|-..++++.
T Consensus 474 ~~~rTk~~~n~~nP~W~~e~f~F~~--~~pELA~lRf~V~D~d~~-~~--d~figq~~lPv~~-----Lr~GYR~VpL~~ 543 (567)
T PLN02228 474 VSYRTETAVDQWFPIWGNDEFLFQL--RVPELALLWFKVQDYDND-TQ--NDFAGQTCLPLPE-----LKSGVRAVRLHD 543 (567)
T ss_pred CcceeeccCCCCCceECCCeEEEEE--EcCceeEEEEEEEeCCCC-CC--CCEEEEEEcchhH-----hhCCeeEEEccC
Confidence 4567777666679999 99888654 445567888886532111 11 2556888888765 677777777764
No 132
>PF04793 Herpes_BBRF1: BRRF1-like protein; InterPro: IPR006878 Most proteins in this entry are uncharacterised viral proteins translated from gene 49. The UL6 locus of pseudorabies virus (PRV) has a gene cluster with homology to herpes simplex virus UL5, UL6, UL7 and UL8, Epstein-Barr virus BBRF1 and BBRF2, and Kaposi sarcoma-associated herpes virus ORF43 and ORF42 [].
Probab=36.32 E-value=3.9e+02 Score=32.09 Aligned_cols=61 Identities=23% Similarity=0.378 Sum_probs=42.2
Q ss_pred cchhHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHhcchhh--HHHHHHHHHHHHHhh
Q psy8415 567 QPLLTKAKLECIKNLVSGKLFSEDESRSYLLARICKHLRLHLAHRDE--LKLCTEILSEILSFL 628 (1561)
Q Consensus 567 ~~~L~~~KL~~i~~iv~~~Lf~~~e~R~~Llp~~~~~l~~hl~~~~~--~~lc~~iL~~iL~~L 628 (1561)
.+.+...|..|+..+++. |+...+.+..++|.+.+-|+-||+.-.. -.-|=..+..+|+.+
T Consensus 27 ~p~~~leR~~fL~kv~q~-L~qhr~~E~~Ivp~i~~ni~y~L~~L~~~~~~~~~~~i~~~L~~l 89 (284)
T PF04793_consen 27 HPLLALERGLFLLKVCQV-LMQHRQSEPFIVPKIRSNIIYFLEELKELSPGDCQEAIKEILDHL 89 (284)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 455778999999988883 6677778888899999999888863111 122344556666665
No 133
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=36.22 E-value=8.7e+02 Score=29.53 Aligned_cols=85 Identities=11% Similarity=0.141 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHhCCcchHHHHHHHHHHHHHHhhcCC--CCCCCcchhhhhhhHHHHHHHHHhhHHHH
Q psy8415 677 SLVACLIGLLQLLDESHYKKLWEELGDKKPLKDFLLRAFLVLRDLVKQD--VFPPDWLVMRMVTNQVILTALGHLAPPLI 754 (1561)
Q Consensus 677 ~l~acll~il~~m~~~~~~~~~~~~~~~~dl~~fL~~~~~~~~~ll~~~--~fP~~Wl~m~~~~~~v~L~~L~~ls~~l~ 754 (1561)
+.+.|+..|++.+.+. -.+.+.+++..+|.....+++++ .||. +.....+.|+.+.....
T Consensus 91 evL~l~~~ii~kl~~~----------~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe--------~r~~ff~LL~~i~~~~f 152 (319)
T PF08767_consen 91 EVLSLMATIINKLGEL----------IQPQVPQILEAVFECTLPMINKDFEEYPE--------HRVNFFKLLRAINEHCF 152 (319)
T ss_dssp HHHHHHHHHHHHHGGG----------CCCCHHHHHHHHHHHHHHHHSSTSSSSHH--------HHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHh----------hhhhHHHHHHHHHHHHHHHHHhhhhhChH--------HHHHHHHHHHHHHHHhH
Confidence 5566777776555441 24567777777788888888765 4664 11123344444333322
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHhCCC
Q psy8415 755 YWFLDSRGAFAYQVWSNYFNLAVSFLTQP 783 (1561)
Q Consensus 755 ~~f~~~~~~Fd~~LW~~~f~~ll~~l~q~ 783 (1561)
..++ .++.+.++.++..++--+.++
T Consensus 153 ~~l~----~lp~~~f~~~idsi~wg~kh~ 177 (319)
T PF08767_consen 153 PALL----QLPPEQFKLVIDSIVWGFKHT 177 (319)
T ss_dssp HHHH----HS-HHHHHHHHHHHHHHHTSS
T ss_pred HHHH----cCCHHHHHHHHHHHHHHhCCC
Confidence 2222 244677777777777767765
No 134
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=35.90 E-value=77 Score=31.58 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=40.7
Q ss_pred cceEEEEEEEecCCCccceeEEEeecccccc----CcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 235 SSEYHSMIIYHHNSPCWSEIIRLAVPIERYQ----SSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 235 ~s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~----~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
...++|.|...+.+|.|+ ++. +|...+. ..+|.|+.++-... .++ ..+|.+-+||-+
T Consensus 37 ~~~~kT~vi~~t~nP~Wn-~f~--~~~~~l~~~~~~~~l~~~V~d~d~~-~~d--~~iG~~~~~l~~ 97 (110)
T cd04047 37 VLVYRTEVIKNTLNPVWK-PFT--IPLQKLCNGDYDRPIKIEVYDYDSS-GKH--DLIGEFETTLDE 97 (110)
T ss_pred EEEEeeeEeccCCCCceE-EEE--EEHHHhcCCCcCCEEEEEEEEeCCC-CCC--cEEEEEEEEHHH
Confidence 456899999999999999 555 4444332 57999998755322 233 789999998764
No 135
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=33.39 E-value=93 Score=33.48 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=38.5
Q ss_pred eEEEEEEEe-cCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 237 EYHSMIIYH-HNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 237 ~~~S~V~yH-n~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.++|-+.-. ..+|.|+|++.+.++.. ...+|.|++++.... .++ ..+|.+.+||-+
T Consensus 33 ~~kTk~~~~~t~nP~WNE~F~f~v~~~--~~~~l~v~V~d~~~~-~~d--d~lG~v~i~L~~ 89 (150)
T cd04019 33 VLRTRPSQTRNGNPSWNEELMFVAAEP--FEDHLILSVEDRVGP-NKD--EPLGRAVIPLND 89 (150)
T ss_pred EeeeEeccCCCCCCcccCcEEEEecCc--cCCeEEEEEEEecCC-CCC--CeEEEEEEEHHH
Confidence 456666544 58999999999988632 236888887754321 122 789999999764
No 136
>KOG1586|consensus
Probab=31.22 E-value=8.4e+02 Score=28.83 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=58.8
Q ss_pred hHHHhHHhHHHHHHHHHHHHhhccccccCCCCcccchhHHHhHHHHHHhhcCChhHHHHHHHHHHHHHccCCChHHHHHH
Q psy8415 910 QWKETGSAFISSVTRLLERLLDYRSVIQGDENRDKRMSCTVNLLNFYKNEINRKEMYLRYIYKLHDLHRPADNFTEAGFT 989 (1561)
Q Consensus 910 ~l~~~~~~F~~~V~~ll~~Ll~~r~v~~~~E~~d~rm~~tl~Ll~fyk~~~~r~emyiryv~~La~lH~~~~Ny~EAAl~ 989 (1561)
.|...|..|...-+--++ ..++++--.+.+...+-|| .. +|+-=++=+.+-.++....|+|+-||--
T Consensus 49 ~w~~AG~aflkaA~~h~k-----------~~skhDaat~YveA~~cyk-k~-~~~eAv~cL~~aieIyt~~Grf~~aAk~ 115 (288)
T KOG1586|consen 49 NWSAAGDAFLKAADLHLK-----------AGSKHDAATTYVEAANCYK-KV-DPEEAVNCLEKAIEIYTDMGRFTMAAKH 115 (288)
T ss_pred hHHHHHHHHHHHHHHHHh-----------cCCchhHHHHHHHHHHHhh-cc-ChHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 577888888875443221 1244445567888888888 44 8888888888888999999999999988
Q ss_pred HHHHHHHcCccC
Q psy8415 990 LKLYADSLSWTS 1001 (1561)
Q Consensus 990 L~lhA~ll~W~~ 1001 (1561)
..-+|++|+-+.
T Consensus 116 ~~~iaEiyEsdl 127 (288)
T KOG1586|consen 116 HIEIAEIYESDL 127 (288)
T ss_pred hhhHHHHHhhhH
Confidence 888888887653
No 137
>KOG3895|consensus
Probab=31.13 E-value=1.8e+02 Score=35.44 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=14.3
Q ss_pred HHhccCCCCccccCCCCCCCCCcccCCC
Q psy8415 1323 RQSIRKPPTESIIHSPLPPVPDQYINAG 1350 (1561)
Q Consensus 1323 k~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1350 (1561)
..++.+.+.+-.--.||.+ |.-+++++
T Consensus 387 vskmaq~l~~~~~a~sP~r-p~t~q~~~ 413 (488)
T KOG3895|consen 387 VSKMAQLLTRPIAAESPAR-PTTSQVPS 413 (488)
T ss_pred HHHhhhccCCCCCCCCCCC-CcccccCC
Confidence 4456666665544455555 54444443
No 138
>KOG1030|consensus
Probab=30.97 E-value=94 Score=34.31 Aligned_cols=39 Identities=15% Similarity=0.404 Sum_probs=31.0
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccc
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCST 278 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~ 278 (1561)
..+|-|.|+|.||.|+|++-+.++ -...+|..+.|.--.
T Consensus 39 ~lkT~~v~~n~NPeWNe~ltf~v~---d~~~~lkv~VyD~D~ 77 (168)
T KOG1030|consen 39 KLKTRVVYKNLNPEWNEELTFTVK---DPNTPLKVTVYDKDT 77 (168)
T ss_pred eeeeeeecCCCCCcccceEEEEec---CCCceEEEEEEeCCC
Confidence 356779999999999999999997 456688888775543
No 139
>KOG2758|consensus
Probab=30.05 E-value=1.2e+02 Score=36.70 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=36.5
Q ss_pred HhHHHHHHhhcCChhHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHc
Q psy8415 950 VNLLNFYKNEINRKEMYLRYIYKLHDLHRPADNFTEAGFTLKLYADSL 997 (1561)
Q Consensus 950 l~Ll~fyk~~~~r~emyiryv~~La~lH~~~~Ny~EAAl~L~lhA~ll 997 (1561)
+..++.++++.+=.--++.=+|+.|+.+.+||||.+|+-||-+.-.+.
T Consensus 112 ~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~ 159 (432)
T KOG2758|consen 112 VQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALV 159 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhc
Confidence 456666675555444467889999999999999999999987654443
No 140
>KOG1222|consensus
Probab=28.41 E-value=1.4e+03 Score=29.52 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=22.6
Q ss_pred cchHHHHHHcCCCchHHHHHHHHHHHH
Q psy8415 830 SMVGPFLEVTLVPENELRKATLNIFFD 856 (1561)
Q Consensus 830 ~Lv~~iLe~cls~~~~lR~~a~~il~~ 856 (1561)
+.|..++++--+.|+++|+++..++|.
T Consensus 345 ~iveKL~klfp~~h~dL~~~tl~LlfN 371 (791)
T KOG1222|consen 345 GIVEKLLKLFPIQHPDLRKATLMLLFN 371 (791)
T ss_pred cHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 578888888889999999998877764
No 141
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=27.92 E-value=5.5e+02 Score=25.16 Aligned_cols=86 Identities=15% Similarity=0.013 Sum_probs=62.6
Q ss_pred HHccCCChHHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcccchhhhHHHHHHHHHHHHH
Q psy8415 976 LHRPADNFTEAGFTLKLYADSLSWTSSAPLINDPMCQPNGAPEWYRKEQLYYEIISYFDKGKCWEKGIPLCKELADLYEK 1055 (1561)
Q Consensus 976 lH~~~~Ny~EAAl~L~lhA~ll~W~~~~~l~~~~~~~~p~qt~~erKE~L~~~~i~~f~kg~~wE~ai~l~keL~~~YE~ 1055 (1561)
.++..+||.+|--.|...-|+-.-..+.. . ......+++..+.-+..- +.+|.|+..+++.+.+-+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~-------~-----~~~~~~all~lA~~~~~~-G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSS-------S-----NSGLAYALLNLAELHRRF-GHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccch-------h-----hHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHH
Confidence 45679999999988887776643322100 0 233445677766544444 6789999999999999998
Q ss_pred hhhcHHHHHHHHHHHHHHHH
Q psy8415 1056 RLFDYKKLSNILQTQAQFCD 1075 (1561)
Q Consensus 1056 ~~~Dy~kLs~i~~~~a~lY~ 1075 (1561)
. -|...|+.++.-++.+.+
T Consensus 74 ~-~D~~~l~~al~~~~~l~~ 92 (94)
T PF12862_consen 74 N-GDRRCLAYALSWLANLLK 92 (94)
T ss_pred H-CCHHHHHHHHHHHHHHhh
Confidence 6 999999999988887754
No 142
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=27.69 E-value=72 Score=24.16 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcccchhhhHHHHHHHHHHH
Q psy8415 1024 QLYYEIISYFDKGKCWEKGIPLCKELADLY 1053 (1561)
Q Consensus 1024 ~L~~~~i~~f~kg~~wE~ai~l~keL~~~Y 1053 (1561)
++|..+ ..+.+.+.|+.|+..++.++..|
T Consensus 2 a~~~~a-~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLA-RCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHH-HHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHH-HHHHHccCHHHHHHHHHHHHHHC
Confidence 445444 44445789999999999998765
No 143
>PLN02952 phosphoinositide phospholipase C
Probab=27.54 E-value=1.2e+02 Score=39.77 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=47.0
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccCCCCceecCCceEEEEE
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLMEPSGATLQDCQHELFIY 313 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~Vy 313 (1561)
..++|-|...|-+|.|+|++...+. .-+-+-|+|..+.-... .+ ...+|.+-+||-. |+.|...++++
T Consensus 513 ~~~kTkvi~nN~nPvWnE~F~F~i~--~PELAllrf~V~D~D~~-~~--ddfiGq~~lPv~~-----Lr~GyR~VpL~ 580 (599)
T PLN02952 513 AKKKTKIIEDNWYPAWNEEFSFPLT--VPELALLRIEVREYDMS-EK--DDFGGQTCLPVSE-----LRPGIRSVPLH 580 (599)
T ss_pred cceeeeeccCCCCcccCCeeEEEEE--cCCccEEEEEEEecCCC-CC--CCeEEEEEcchhH-----hcCCceeEeCc
Confidence 4567888888899999999886554 33457888886643211 11 2677888888775 67777777775
No 144
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=27.38 E-value=97 Score=24.16 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=23.8
Q ss_pred chHHHHHHcCCCchHHHHHHHHHHHHHHH
Q psy8415 831 MVGPFLEVTLVPENELRKATLNIFFDMME 859 (1561)
Q Consensus 831 Lv~~iLe~cls~~~~lR~~a~~il~~mm~ 859 (1561)
++..+++++..+++++|..|+.-|-.+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35678888999999999999999888765
No 145
>KOG1920|consensus
Probab=27.30 E-value=2.1e+03 Score=31.14 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhC
Q psy8415 679 VACLIGLLQLLDESHYKKLWEELG 702 (1561)
Q Consensus 679 ~acll~il~~m~~~~~~~~~~~~~ 702 (1561)
+|.+.+--.+++...|.-|+++++
T Consensus 855 Lal~VAq~SqkDPkEyLP~L~el~ 878 (1265)
T KOG1920|consen 855 LALLVAQKSQKDPKEYLPFLNELK 878 (1265)
T ss_pred HHHHHHHHhccChHHHHHHHHHHh
Confidence 466777778899999999998884
No 146
>KOG1028|consensus
Probab=26.30 E-value=2e+02 Score=36.31 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=46.3
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeec
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARL 295 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL 295 (1561)
...+|-|.=+..+|.|+|+++..+|.+.....=|.|+.+|..--. ++ ..+|-.++||
T Consensus 202 ~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfs-r~--~~iGev~~~l 258 (421)
T KOG1028|consen 202 GKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFS-RH--DFIGEVILPL 258 (421)
T ss_pred CcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcc-cc--cEEEEEEecC
Confidence 456888988999999999999999999999999999999986422 22 5667777773
No 147
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=26.22 E-value=5.2e+02 Score=26.87 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcccchhhhH
Q psy8415 964 EMYLRYIYKLHDLHRPADNFTEAGFTLKLYADSLSWTSSAPLINDPMCQPNGAPEWYRKEQLYYEIISYFDKGKCWEKGI 1043 (1561)
Q Consensus 964 emyiryv~~La~lH~~~~Ny~EAAl~L~lhA~ll~W~~~~~l~~~~~~~~p~qt~~erKE~L~~~~i~~f~kg~~wE~ai 1043 (1561)
++|+.-+.+|+..+.+.|++.+|.-.+.-......++ |.++...+..+...+....|+
T Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~----------------------E~~~~~lm~~~~~~g~~~~A~ 116 (146)
T PF03704_consen 59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD----------------------EEAYRLLMRALAAQGRRAEAL 116 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----------------------HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHCcCHHHHH
Confidence 5788899999999999999998876654333332222 578888999999999999999
Q ss_pred HHHHHHHHHHHHhhhcH
Q psy8415 1044 PLCKELADLYEKRLFDY 1060 (1561)
Q Consensus 1044 ~l~keL~~~YE~~~~Dy 1060 (1561)
..|+.+...+... ++-
T Consensus 117 ~~Y~~~~~~l~~e-lg~ 132 (146)
T PF03704_consen 117 RVYERYRRRLREE-LGI 132 (146)
T ss_dssp HHHHHHHHHHHHH-HS-
T ss_pred HHHHHHHHHHHHH-hCc
Confidence 9999999988876 443
No 148
>PLN02222 phosphoinositide phospholipase C 2
Probab=25.35 E-value=1.5e+02 Score=38.97 Aligned_cols=69 Identities=13% Similarity=0.199 Sum_probs=49.9
Q ss_pred ceEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccCCCCceecCCceEEEEEe
Q psy8415 236 SEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLMEPSGATLQDCQHELFIYR 314 (1561)
Q Consensus 236 s~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk 314 (1561)
...+|-+...|-+|.|+|++...+ ..-+-+-|+|..+.--.. .. ...+|.+-+|+.. |+.|-+.++++.
T Consensus 495 ~~~rTk~v~nn~nP~W~e~f~F~i--~~PeLAllRf~V~d~D~~-~~--ddfigq~~lPv~~-----Lr~GyR~V~L~~ 563 (581)
T PLN02222 495 VMKKTKTLEDNWIPAWDEVFEFPL--TVPELALLRLEVHEYDMS-EK--DDFGGQTCLPVWE-----LSQGIRAFPLHS 563 (581)
T ss_pred ceeeeEecCCCCCcccCCeeEEEE--EcCceeEEEEEEEECCCC-CC--CcEEEEEEcchhh-----hhCccceEEccC
Confidence 456788888888999999887654 445568899986643111 12 2688999999876 788888888864
No 149
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=24.66 E-value=3.8e+02 Score=32.92 Aligned_cols=94 Identities=21% Similarity=0.183 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCchh-hh-HH----HHHHHHHHHHHcccc---hhhhHHHHHHHHHHHH
Q psy8415 984 TEAGFTLKLYADSLSWTSSAPLINDPMCQPNGAPEW-YR-KE----QLYYEIISYFDKGKC---WEKGIPLCKELADLYE 1054 (1561)
Q Consensus 984 ~EAAl~L~lhA~ll~W~~~~~l~~~~~~~~p~qt~~-er-KE----~L~~~~i~~f~kg~~---wE~ai~l~keL~~~YE 1054 (1561)
+=||+|++-.++.+-|.-..++|-..... +...+ .+ || .|.++++..|+..+. =..+-++|.+|+.+..
T Consensus 238 iWsG~c~K~i~dhLG~gVktG~Pyv~h~k--~~n~~~dL~~E~~Gi~l~E~i~~ff~~~~l~~~a~t~~~cy~ela~~vk 315 (346)
T PLN03180 238 MWAGWCAKVICDHLGLGVKTGLPYIWHSK--ASNPFVNLKKEYKGIFWQEEIIPFFQSVRLPKEAVTVEDCYIELAKQVK 315 (346)
T ss_pred hHHHHHHHHHHHHhCcceecCCceEecCC--cccHHHHHHhhccCeechHHHHHHHHhccCCcccCcHHHHHHHHHHHHH
Confidence 46899999999999886545555443212 22222 33 34 367899999988773 3445667777777666
Q ss_pred Hhh--hc--HHHHHHHHHHHHHHHHHHhh
Q psy8415 1055 KRL--FD--YKKLSNILQTQAQFCDNILN 1079 (1561)
Q Consensus 1055 ~~~--~D--y~kLs~i~~~~a~lY~~I~~ 1079 (1561)
... .| |.++++......++++++..
T Consensus 316 ~~l~~~d~~f~~~a~~M~~Wi~~w~~l~~ 344 (346)
T PLN03180 316 EKLGKVDPYFTKLADAMVTWIEAWKELNS 344 (346)
T ss_pred hhccccCHHHHHHHHHHHHHHHHHHHhCC
Confidence 652 23 77888888888888887653
No 150
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=23.72 E-value=93 Score=23.49 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.0
Q ss_pred HHHHHHHHHcccchhhhHHHHHHHHH
Q psy8415 1026 YYEIISYFDKGKCWEKGIPLCKELAD 1051 (1561)
Q Consensus 1026 ~~~~i~~f~kg~~wE~ai~l~keL~~ 1051 (1561)
|.-++..|-+.+.|+.|..+++++..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67789999999999999999998764
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=23.44 E-value=91 Score=23.20 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.1
Q ss_pred HHHHHHHHHcccchhhhHHHHHHHHH
Q psy8415 1026 YYEIISYFDKGKCWEKGIPLCKELAD 1051 (1561)
Q Consensus 1026 ~~~~i~~f~kg~~wE~ai~l~keL~~ 1051 (1561)
|..+++.|-+.+.||.|..+++++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 67789999999999999999998864
No 152
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=23.42 E-value=1.3e+02 Score=24.19 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=21.7
Q ss_pred HHHHHHHHHcccchhhhHHHHHHHHHHHH
Q psy8415 1026 YYEIISYFDKGKCWEKGIPLCKELADLYE 1054 (1561)
Q Consensus 1026 ~~~~i~~f~kg~~wE~ai~l~keL~~~YE 1054 (1561)
|..+.+.+.+.+.|++|+++|+..+..-+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 35577888889999999999998765443
No 153
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=23.39 E-value=3.2e+02 Score=30.68 Aligned_cols=75 Identities=13% Similarity=0.101 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcccchhhh
Q psy8415 963 KEMYLRYIYKLHDLHRPADNFTEAGFTLKLYADSLSWTSSAPLINDPMCQPNGAPEWYRKEQLYYEIISYFDKGKCWEKG 1042 (1561)
Q Consensus 963 ~emyiryv~~La~lH~~~~Ny~EAAl~L~lhA~ll~W~~~~~l~~~~~~~~p~qt~~erKE~L~~~~i~~f~kg~~wE~a 1042 (1561)
||.--+-+|+.+..+.+.|||.+|.-.+.-+.+.+.-++ ... ++++.. +..+-+.+.|+.|
T Consensus 1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-----------------~a~-~A~l~l-a~a~y~~~~y~~A 61 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-----------------YAP-QAQLML-AYAYYKQGDYEEA 61 (203)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-----------------THH-HHHHHH-HHHHHHTT-HHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-----------------HHH-HHHHHH-HHHHHHcCCHHHH
Confidence 455567789999999999999999999987776654332 111 244444 4444556789999
Q ss_pred HHHHHHHHHHHHHh
Q psy8415 1043 IPLCKELADLYEKR 1056 (1561)
Q Consensus 1043 i~l~keL~~~YE~~ 1056 (1561)
+..++.++..|=..
T Consensus 62 ~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 62 IAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHCCCC
Confidence 99999999877653
No 154
>KOG2003|consensus
Probab=23.33 E-value=2.4e+02 Score=35.40 Aligned_cols=101 Identities=16% Similarity=0.247 Sum_probs=60.8
Q ss_pred HHHhHHHHHHhhcCChhHHHHH--------------HHHHHHHHccCCChHHHHHHHHH-------HHHHcCccCC----
Q psy8415 948 CTVNLLNFYKNEINRKEMYLRY--------------IYKLHDLHRPADNFTEAGFTLKL-------YADSLSWTSS---- 1002 (1561)
Q Consensus 948 ~tl~Ll~fyk~~~~r~emyiry--------------v~~La~lH~~~~Ny~EAAl~L~l-------hA~ll~W~~~---- 1002 (1561)
..+++.+.|. ...+|.--|.| +.+|++++-+.|+..+|=.|.-- --+.++|-..
T Consensus 560 vl~qianiye-~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 560 VLVQIANIYE-LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID 638 (840)
T ss_pred HHHHHHHHHH-HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence 4557777776 77777777776 45679999999999998887631 1122333210
Q ss_pred CCC-----CCCC--CCCCCCCchhhhHHHHHHHHHHHHHcccchhhhHHHHHHHHHHHHH
Q psy8415 1003 APL-----INDP--MCQPNGAPEWYRKEQLYYEIISYFDKGKCWEKGIPLCKELADLYEK 1055 (1561)
Q Consensus 1003 ~~l-----~~~~--~~~~p~qt~~erKE~L~~~~i~~f~kg~~wE~ai~l~keL~~~YE~ 1055 (1561)
..+ --+. ..-.|.|+.|++ .++.+|.+.+.|.+|.++||.+-.-+-.
T Consensus 639 tqf~ekai~y~ekaaliqp~~~kwql------miasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAALIQPNQSKWQL------MIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred hHHHHHHHHHHHHHHhcCccHHHHHH------HHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 000 0000 012234444443 4778888888888888888887655544
No 155
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=22.76 E-value=4.3e+02 Score=32.39 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCchhh-hHH----HHHHHHHHHHHcccchh---hhHHHHHHHHHHHHHh
Q psy8415 985 EAGFTLKLYADSLSWTSSAPLINDPMCQPNGAPEWY-RKE----QLYYEIISYFDKGKCWE---KGIPLCKELADLYEKR 1056 (1561)
Q Consensus 985 EAAl~L~lhA~ll~W~~~~~l~~~~~~~~p~qt~~e-rKE----~L~~~~i~~f~kg~~wE---~ai~l~keL~~~YE~~ 1056 (1561)
=+|+|++..++.+.+.-..+.|-.....-+ .+-.. .|| .|.++++.+|+.-+.=+ .+-++|.||+.+-+..
T Consensus 240 WsG~f~k~~~d~Lg~~V~~G~P~v~H~~a~-~~~~dL~~E~~Gi~l~E~i~~f~q~v~Ls~~A~t~~dcy~ELA~~Vkek 318 (348)
T PF03214_consen 240 WSGYFLKVICDHLGHGVKTGLPYVWHNKAH-NAFDDLKKEVPGIELNEDILPFFQSVKLSKTAVTVEDCYRELAKQVKEK 318 (348)
T ss_pred HHHHHHHHHHHHcCCccccCCceEEecCCC-chHHHHHhhccchhhHHHHHHHHhccCCCcccccHHHHHHHHHHHHHHh
Confidence 489999999999988654455443321111 11112 345 47889999998766544 5568999999998886
Q ss_pred hh----cHHHHHHHHHHHHHHHHHHhh
Q psy8415 1057 LF----DYKKLSNILQTQAQFCDNILN 1079 (1561)
Q Consensus 1057 ~~----Dy~kLs~i~~~~a~lY~~I~~ 1079 (1561)
.. -|.++|+......++++++..
T Consensus 319 Lg~~dp~F~kvAdaMv~WI~AW~~lns 345 (348)
T PF03214_consen 319 LGSVDPYFTKVADAMVAWIKAWKELNS 345 (348)
T ss_pred ccCcChHHHHHHHHHHHHHHHHHHhCC
Confidence 32 378888888888888887754
No 156
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=22.43 E-value=1.9e+02 Score=29.83 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=33.6
Q ss_pred EEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccC
Q psy8415 238 YHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLME 297 (1561)
Q Consensus 238 ~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~ 297 (1561)
.+|.| -+..+|.|+|++-+.+...... -|.+..++.... .++ ..+|-+.+||-.
T Consensus 36 ~kT~v-~~~~nP~WnE~f~f~~~~~~~~--~l~v~v~d~~~~-~~d--~~iG~v~i~l~~ 89 (126)
T cd08400 36 ARTKV-REGPNPVWSEEFVFDDLPPDVN--SFTISLSNKAKR-SKD--SEIAEVTVQLSK 89 (126)
T ss_pred EEeec-CCCCCCccCCEEEEecCCCCcC--EEEEEEEECCCC-CCC--CeEEEEEEEHhH
Confidence 35665 4689999999999874332222 244444433211 223 789999999774
No 157
>PLN02223 phosphoinositide phospholipase C
Probab=22.09 E-value=1.9e+02 Score=37.49 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=46.3
Q ss_pred eEEEEEEEecCCCccceeEEEeeccccccCcEEEEEEeeccccccccCCcceEEEEeeccCCCCceecCCceEEEEEe
Q psy8415 237 EYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLMEPSGATLQDCQHELFIYR 314 (1561)
Q Consensus 237 ~~~S~V~yHn~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk 314 (1561)
.++|.|.-..-+|.|+|++...| ..-+-+-|+|..+.--.. .+ ...+|-+-+|+.. |+.|-..++++.
T Consensus 452 ~~kT~v~nNg~nPvWne~F~F~i--~~PELAlLrf~V~D~D~~-~~--ddfiGQ~~LPv~~-----Lr~GyR~VpL~~ 519 (537)
T PLN02223 452 IMKTTVKNNEWKPTWGEEFTFPL--TYPDLALISFEVYDYEVS-TA--DAFCGQTCLPVSE-----LIEGIRAVPLYD 519 (537)
T ss_pred eeEEEeCCCCcCceecceeEEEE--EccCceEEEEEEEecCCC-CC--CcEEEEEecchHH-----hcCCceeEeccC
Confidence 45666655567899999987654 445567889987643111 11 2567888888875 778888888864
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=22.00 E-value=1.5e+02 Score=26.26 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=39.1
Q ss_pred HHHHHHHccCCChHHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcccchhhhHHHHHHHH
Q psy8415 971 YKLHDLHRPADNFTEAGFTLKLYADSLSWTSSAPLINDPMCQPNGAPEWYRKEQLYYEIISYFDKGKCWEKGIPLCKELA 1050 (1561)
Q Consensus 971 ~~La~lH~~~~Ny~EAAl~L~lhA~ll~W~~~~~l~~~~~~~~p~qt~~erKE~L~~~~i~~f~kg~~wE~ai~l~keL~ 1050 (1561)
+.++..+.+.|+|.+|.-++.-..+.. + . .-+.+ ......+...+.|+.|+..|+.++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~---P-------------~-----~~~a~-~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD---P-------------D-----NPEAW-YLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS---T-------------T-----HHHHH-HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC---C-------------C-----CHHHH-HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467889999999999988875433221 1 0 11233 344455556788899999999887
Q ss_pred HH
Q psy8415 1051 DL 1052 (1561)
Q Consensus 1051 ~~ 1052 (1561)
..
T Consensus 59 ~~ 60 (65)
T PF13432_consen 59 EL 60 (65)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 159
>KOG4825|consensus
Probab=21.95 E-value=7.1e+02 Score=31.56 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH-hccCCC--CCcHHHHHHHHHHHHHHHHhccC
Q psy8415 1274 QYIPYINRLHILILEQVDVLENGLVV-HGQLAP--PGVQPLHKRLQERFAGLRQSIRK 1328 (1561)
Q Consensus 1274 ~~~~~v~~Lk~~~~~~v~vl~~~L~l-H~~li~--~~~~~~H~~Le~~F~~lk~~l~~ 1328 (1561)
++-+...+++.+++++-+.-++-=++ +.+-|. .+.-.+-+.+......++.++-.
T Consensus 187 EdfdlAKkaklAiaDLkKsgeeleelEndKgcAVadEDfdlAkdkkdeiealRaeila 244 (666)
T KOG4825|consen 187 EDFDLAKKAKLAIADLKKSGEELEELENDKGCAVADEDFDLAKDKKDEIEALRAEILA 244 (666)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 44567889999999998877665444 333343 23334444555555555555544
No 160
>KOG0906|consensus
Probab=21.93 E-value=1.1e+02 Score=39.87 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=52.0
Q ss_pred CCCccceeEEEeec-cccccCcEEEEEEeeccccccccCCcceEEEEeeccCCCCceecCCceEEEEEe
Q psy8415 247 NSPCWSEIIRLAVP-IERYQSSHIRLEYRHCSTRDKADNKKLLGFSFARLMEPSGATLQDCQHELFIYR 314 (1561)
Q Consensus 247 ~~P~w~EeIKi~LP-~~~~~~~HLlFtFrH~S~~~k~~~~~pfg~a~lPL~~~~g~~l~DG~h~L~Vyk 314 (1561)
+.=.|+|.+++.+- .++..++||..|.-.++|..+ ..+||-+-+-|+..+|. ++.|-|.|.+..
T Consensus 75 ~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~---~~~vg~~t~~lf~k~~~-lk~G~~~l~~~~ 139 (843)
T KOG0906|consen 75 KRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKK---AVFVGGTTVSLFGKYGM-LKQGMQDLKLWP 139 (843)
T ss_pred CccchhhhhccccccccccccceEEEEEEecCCCce---eeeccceEEEeecccch-Hhhhhhhccccc
Confidence 44469999887665 467778999999988877654 37899999999987886 999999999875
No 161
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=21.85 E-value=4.7e+02 Score=23.96 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=51.1
Q ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcccchhhhHHHHH
Q psy8415 968 RYIYKLHDLHRPADNFTEAGFTLKLYADSLSWTSSAPLINDPMCQPNGAPEWYRKEQLYYEIISYFDKGKCWEKGIPLCK 1047 (1561)
Q Consensus 968 ryv~~La~lH~~~~Ny~EAAl~L~lhA~ll~W~~~~~l~~~~~~~~p~qt~~erKE~L~~~~i~~f~kg~~wE~ai~l~k 1047 (1561)
+.+..|+..+...|+|.||--++...-++..--+ . .....-..+..+...+.+-+.++.|+..++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------------~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLG-------------D--DHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-------------T--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC-------------C--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567889999999999999887765555421111 0 111123567788888888888999999999
Q ss_pred HHHHHHHH
Q psy8415 1048 ELADLYEK 1055 (1561)
Q Consensus 1048 eL~~~YE~ 1055 (1561)
.-..++|+
T Consensus 71 ~al~i~~k 78 (78)
T PF13424_consen 71 KALDIFEK 78 (78)
T ss_dssp HHHHHHHH
T ss_pred HHHhhhcC
Confidence 99888874
No 162
>PF08748 DUF1789: Domain of unknown function (DUF1789); InterPro: IPR014859 This entry represents a putative uncharacterised protein found in phage-related conserved hypothetical protein from Bordetella.
Probab=21.76 E-value=93 Score=32.96 Aligned_cols=33 Identities=6% Similarity=0.260 Sum_probs=26.7
Q ss_pred cCCCccceeEEEeeccccccCcEEEEEEeeccccc
Q psy8415 246 HNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRD 280 (1561)
Q Consensus 246 n~~P~w~EeIKi~LP~~~~~~~HLlFtFrH~S~~~ 280 (1561)
+.+|+|.-.|+|.+|-.... -|-|||+|++..+
T Consensus 9 ~~~PtFk~~V~ip~~gg~~~--~v~ftFkh~~~~e 41 (128)
T PF08748_consen 9 GPNPTFKAPVKIPRAGGEPA--KVTFTFKHRDRSE 41 (128)
T ss_pred CCCCCceeeEEeecCCCCcc--eEEEEEEeCCHHH
Confidence 57999999999999876443 3899999997654
No 163
>KOG4672|consensus
Probab=21.19 E-value=1.7e+03 Score=28.08 Aligned_cols=50 Identities=14% Similarity=0.068 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHhccCCCC
Q psy8415 1281 RLHILILEQVDVLENGLVVHGQLAPPGVQPLHKRLQERFAGLRQSIRKPPT 1331 (1561)
Q Consensus 1281 ~Lk~~~~~~v~vl~~~L~lH~~li~~~~~~~H~~Le~~F~~lk~~l~~~~~ 1331 (1561)
-||+.....-...++++++...--+.-...| ++++-.|++.+.+.+++.+
T Consensus 78 vLkdkrKK~rEtfer~~rlye~~~p~~~~~L-~r~eveye~kr~~~sqYy~ 127 (487)
T KOG4672|consen 78 VLKDKRKKRRETFERGKRLYEATEPVMFSHL-QRREVEYEDKRPEDSQYYH 127 (487)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccChHHHHHH-HHHhhhhhhhchhhhhhhh
Confidence 4566666666677778877766555545666 5667779999999988875
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=20.39 E-value=4.8e+02 Score=28.18 Aligned_cols=89 Identities=10% Similarity=0.074 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcccchhhhHH
Q psy8415 965 MYLRYIYKLHDLHRPADNFTEAGFTLKLYADSLSWTSSAPLINDPMCQPNGAPEWYRKEQLYYEIISYFDKGKCWEKGIP 1044 (1561)
Q Consensus 965 myiryv~~La~lH~~~~Ny~EAAl~L~lhA~ll~W~~~~~l~~~~~~~~p~qt~~erKE~L~~~~i~~f~kg~~wE~ai~ 1044 (1561)
......+.++..+...|+|.||.-++....+. .++. + + ....+...+..+.+.+.|+.|+.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~------------~-----~-~~~~~~~la~~~~~~g~~~~A~~ 93 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKL-EEDP------------N-----D-RSYILYNMGIIYASNGEHDKALE 93 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhcc------------c-----h-HHHHHHHHHHHHHHcCCHHHHHH
Confidence 44456688889999999999998888754433 1111 0 0 12345666677777888999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q psy8415 1045 LCKELADLYEKRLFDYKKLSNILQTQAQ 1072 (1561)
Q Consensus 1045 l~keL~~~YE~~~~Dy~kLs~i~~~~a~ 1072 (1561)
.|+..+.........+..++.++..+.+
T Consensus 94 ~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 94 YYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 9998888665543444455555544433
Done!