RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8415
(1561 letters)
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK
guanine nucleotide exchange factors; 2.70A {Homo sapiens}
PDB: 3b13_A
Length = 436
Score = 400 bits (1030), Expect = e-126
Identities = 178/428 (41%), Positives = 243/428 (56%), Gaps = 40/428 (9%)
Query: 938 GDENRDKRMSCTVNLLNFYKNEINRKEMYLRYIYKLHDLHRPADNFTEAGFTLKLYADSL 997
DE++D RMSCTVNLLNFYK + NR+EMY+RY+YKL DLH DN+TEA +TL L+ L
Sbjct: 7 TDESKDNRMSCTVNLLNFYK-DNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLL 65
Query: 998 SWTSSA-PLINDPMCQPNGAPEWYRKEQLYYEIISYFDKGKCWEKGIPLCKELADLYEKR 1056
W+ Q + KE LY II YFDKGK WE+ I LCKELA+ YE
Sbjct: 66 KWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISLCKELAEQYEME 125
Query: 1057 LFDYKKLSNILQTQAQFCDNILNQLRPEPEYFRVGFYGLSFPLFVRNKVFVYRGLAYERM 1116
+FDY+ LS L QA+F ++I+ LRP+P+YF VG+YG FP F+RNKVF+YRG YER
Sbjct: 126 IFDYELLSQNLIQQAKFYESIMKILRPKPDYFAVGYYGQGFPSFLRNKVFIYRGKEYERR 185
Query: 1117 EAFTQRLQTEFPSANILSKNSPPSHTIQQSDVQYIQICNVKPLPERGPPCINPPLAPVPD 1176
E F +L T+FP+A ++ S P ++ + QYIQ V+P+ + P N PVPD
Sbjct: 186 EDFQMQLMTQFPNAEKMNTTSAPGDDVKNAPGQYIQCFTVQPVLDEHPRFKNK---PVPD 242
Query: 1177 KIAQYYQVNDVRTFQLDRPMHKGPIDKDNEFKSLWLERTIMTISSPLPGILRWFEVVESN 1236
+I +Y+ N V+ F RP+ +G +D +NEF S+W+ERT + LPGILRWFEVV +
Sbjct: 243 QIINFYKSNYVQRFHYSRPVRRGTVDPENEFASMWIERTSFVTAYKLPGILRWFEVVHMS 302
Query: 1237 VDLENP-----------------------------------GLQGTIDANVMGGIAKYQQ 1261
+P L G +D VMGG AKY++
Sbjct: 303 QTTISPLENAIETMSTANEKILMMINQYQSDETLPINPLSMLLNGIVDPAVMGGFAKYEK 362
Query: 1262 AFFTPEFARGYPQYIPYINRLHILILEQVDVLENGLVVHGQLAPPGVQPLHKRLQERFAG 1321
AFFT E+ R +P+ + L LI Q+ L G+ +H + ++P H R++E F
Sbjct: 363 AFFTEEYVRDHPEDQDKLTHLKDLIAWQIPFLGAGIKIHEKRVSDNLRPFHDRMEECFKN 422
Query: 1322 LRQSIRKP 1329
L+ + K
Sbjct: 423 LKMKVEKE 430
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane,
phosphoprotein, nucleotide-binding, alternative splicing;
2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Length = 428
Score = 300 bits (768), Expect = 2e-90
Identities = 63/434 (14%), Positives = 141/434 (32%), Gaps = 75/434 (17%)
Query: 957 KNEINRKEMYLRYIYKLHDLHRPADNFTEAGFTLKLYAD----------SLSWTSSAPLI 1006
K+ + E+ ++ + +H + +EA +A +
Sbjct: 1 KSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRV 60
Query: 1007 NDPMCQPNGAPE-----------WYRKEQLYYEIISYFDKGKCWEKGIPLCKELADLYEK 1055
P + +L + K + +E + K + +YEK
Sbjct: 61 ITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEK 120
Query: 1056 RLFDYKKLSNILQTQAQFCDNILNQL----RPEPEYFRVGFYGLSFPLFVRNKVFVYRGL 1111
R D+++L+++ T + + + R YFRV F+G F K ++Y+
Sbjct: 121 R-RDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEP 179
Query: 1112 AYERMEAFTQRLQTEFPS------ANILSKNSPPSHTIQQSDVQYIQICNVKPLPERGPP 1165
+ +QRL + ++ + + S YIQ+ +V P +
Sbjct: 180 KLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHVIPFFDEK-- 237
Query: 1166 CINPPLAPVPDKIAQYYQVNDVRTFQLDRPMHKGPIDKDNEFKSLWLERTIMTISSPLPG 1225
+ ++ ++ + +++R F + P + + + RTI+T P
Sbjct: 238 -------ELQERKTEFERSHNIRRFMFEMPFTQTG-KRQGGVEEQCKRRTILTAIHCFPY 289
Query: 1226 ILRWFEVVESNVDLENP-------------------------------GLQGTIDANVMG 1254
+ + V+ + NP LQG++ V
Sbjct: 290 VKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNA 349
Query: 1255 GIAKYQQAFFTPEFARGYPQYIPYINRLHILILEQVDVLENGLVVHGQLAPPGVQPLHKR 1314
G Y +AF + YP + L + + V+ L V+ +L +
Sbjct: 350 GPLAYARAFLDDTNTKRYPD--NKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEE 407
Query: 1315 LQERFAGLRQSIRK 1328
++ + + + + +
Sbjct: 408 MKANYREMAKELSE 421
>3vhl_A Dedicator of cytokinesis protein 8; signal transduction, guanine
nucleotide exchang factor, GTPA signaling protein; 2.08A
{Mus musculus}
Length = 288
Score = 216 bits (552), Expect = 3e-63
Identities = 54/299 (18%), Positives = 100/299 (33%), Gaps = 55/299 (18%)
Query: 1079 NQLRPEPEYFRVGFYGLSFPLFVRNKVFVYRGLAYERMEAFTQRLQTEFPS------ANI 1132
+ R YFRVGFYG F + + FVY+ A ++ + RL+ + +
Sbjct: 8 DHKRMFGTYFRVGFYGSRFG-DLDEQEFVYKEPAITKLPEISHRLEGFYGQCFGAEFVEV 66
Query: 1133 LSKNSPPSHTIQQSDVQYIQICNVKPLPERGPPCINPPLAPVPDKIAQYYQVNDVRTFQL 1192
+ ++P T + YIQI V+P + + D++ + + ++R F
Sbjct: 67 IKDSTPVDKTKLDPNKAYIQITFVEPYFDE---------YEMKDRVTYFEKNFNLRRFMY 117
Query: 1193 DRPMHKGPIDKDNEFKSLWLERTIMTISSPLPGILRWFEVVESNVDLENP---------- 1242
P + E T++T P I V + + P
Sbjct: 118 TTPFTLEGRPR-GELHEQHRRNTVLTTMHAFPYIKTRIRVSQKEEFVLTPIEVAIEDMKK 176
Query: 1243 ---------------------GLQGTIDANVMGGIAKYQQAFFTPEFARGYPQYIPYINR 1281
LQG++ A V G + Q F A + N+
Sbjct: 177 KTLQLAVATHQEPPDAKMLQMVLQGSVGATVNQGPLEVAQVFLAEIPADPKLY--RHHNK 234
Query: 1282 LHILILEQVDVLENGLVVHGQLAPPGVQPLHKRLQERFAGLRQSIRKPPTESIIHSPLP 1340
L + E + + + +L + + L++ + LR S+ +I +P
Sbjct: 235 LRLCFKEFIMRCGEAVEKNRRLITAEQREYQQELKKNYNKLRDSL-----RPMIERKIP 288
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1,
phosphoinositide specificity, guanine exchan factor, RHO
GTPase, cytoskeleton, cell migration; 2.37A {Homo
sapiens}
Length = 220
Score = 211 bits (539), Expect = 2e-62
Identities = 79/193 (40%), Positives = 115/193 (59%), Gaps = 2/193 (1%)
Query: 185 RNDLYLILERGEFEKGGKSTGKNIEVTVQVLDSDGTVLQNCLWGASGSDTSSEYHSMIIY 244
RND+Y+ L +G+F+KG K+T KN+EVTV V D DG L++ ++ +G + SEY S+I Y
Sbjct: 26 RNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYY 85
Query: 245 HHNSPCWSEIIRLAVPIERYQSSHIRLEYRHCSTRDKAD-NKKLLGFSFARLMEPSGATL 303
P W E +++A+PIE SH+R +RH S++D D ++K+ +F +LM G TL
Sbjct: 86 QVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMRYDGTTL 145
Query: 304 QDCQHELFIYRCEERSKLDPGHYLGLASTVQEAQA-GTVPIPYKTDSAHYACSHKESVFI 362
+D +H+L +Y+ E + D YL L ST E + G S K+S I
Sbjct: 146 RDGEHDLIVYKAEAKKLEDAATYLSLPSTKAELEEKGHSATGKSMQSLGSCTISKDSFQI 205
Query: 363 RTLLCSTKLTQNV 375
TL+CSTKLTQNV
Sbjct: 206 STLVCSTKLTQNV 218
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 89.5 bits (221), Expect = 6e-18
Identities = 102/581 (17%), Positives = 192/581 (33%), Gaps = 172/581 (29%)
Query: 854 FFDMMECEQRVHGNFKQV-ESELIDKLDILISDNKGDDEYRQLFNTILLDRVQNEDPQWK 912
F D +C + V K + E ID I++S + R LF LL + +
Sbjct: 29 FVDNFDC-KDVQDMPKSILSKEEID--HIIMSKDAVSGTLR-LF-WTLLS-------KQE 76
Query: 913 ETGSAFISSVTRLLERLLDYR---SVIQGDENRDKRM------SCTVNLLN----FYKNE 959
E F+ V R+ +Y+ S I+ E R M L N F K
Sbjct: 77 EMVQKFVEEVLRI-----NYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 960 INRKEMYLRYIYKLHDLHRPADNFT---EAGFTLKLYADSLSW-TSSAPLINDPMCQPNG 1015
++R + YL+ L +L RPA N G K +W L C+ +
Sbjct: 131 VSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSG-K------TWVALDVCLSYKVQCKMDF 182
Query: 1016 APEW-----YRK--------EQLYYEIISYFDKGKCWEKGIPLCKELADLYEKRLFDYKK 1062
W ++L Y+I + I L +RL K
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 1063 LSN---ILQTQAQFCDNILNQLRPEPEYFRVGFYGLSFPLFV--RNK-VFVYRGLAYE-- 1114
N +L N+ N + + F LS + + R K V + A
Sbjct: 243 YENCLLVL-------LNVQN-----AKAWNA-F-NLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 1115 -RMEAFTQRLQTEFPSANILSKNSPPSHTIQQSDVQYIQICNVKPLPERGPPC-INPPL- 1171
++ + L T ++L K Y+ C + LP NP
Sbjct: 289 ISLDHHSMTL-TPDEVKSLLLK--------------YLD-CRPQDLPREV--LTTNPRRL 330
Query: 1172 ----APVPDKIA--QYYQVNDVRTFQLDRPMHKGPID--KDNEFKSLWLERTIMTISSPL 1223
+ D +A ++ V +L + + ++ + E++ ++ ++ S+ +
Sbjct: 331 SIIAESIRDGLATWDNWK--HVNCDKLTTII-ESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 1224 P----GILRWFEVVESNVDLENPGLQGTIDANVMGGIAKYQQAFFTPEFARGYPQYIPYI 1279
P ++ WF+V++S+V + V+ + KY + + I
Sbjct: 388 PTILLSLI-WFDVIKSDVMV------------VVNKLHKYSLV------EKQPKESTISI 428
Query: 1280 NRLHILILEQVDVLENGLVVHGQLAPPGVQPLHKRLQERFAGLRQSIRKPPTESIIHSPL 1339
+++ + +++ LH+ + + + + ++ + +
Sbjct: 429 PSIYLELKVKLE---------------NEYALHRSIVDHY----NIPKTFDSDDL----I 465
Query: 1340 PPVPDQYINA--GYH--PVEEGED------IYSRPGDLDLG 1370
PP DQY + G+H +E E ++ LD
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-----LDFR 501
Score = 88.8 bits (219), Expect = 1e-17
Identities = 114/720 (15%), Positives = 212/720 (29%), Gaps = 213/720 (29%)
Query: 345 YKTDSAHYAC----SHKESVFIRTLLCS--TKLTQNV----EILNLLKWREHPEKIQEA- 393
++T Y S E F+ C + +++ EI +++ + +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM---SKDAVSGTL 65
Query: 394 -LNQALCLEGQELVK-FLQDILDA----LFSMFSTEDGNSTMHSGLVFHVLTHIFSLLYD 447
L L + +E+V+ F++++L L S TE +M +T ++ D
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM--------MTRMYIEQRD 117
Query: 448 SKGLITSIQHCADY-VSSTEKQEPIQKCFRSLEYVFKFIIESRLLFSRATGGQYEEGFQR 506
L Q A Y VS + +++ L +I+ G G +
Sbjct: 118 R--LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID----------GV--LGSGK 163
Query: 507 DLFAVFNALNSMLSVSYDIILDTQVTFKSGWVTL---NRDYQLILEVAKFASDMLECLGK 563
A L V + ++ FK W+ L N ++ + K +
Sbjct: 164 TWVA--------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 564 REAQPLLTKAKLECIKNLVSGKLFSEDESRSYLL------ARI-------CKHLRLHLAH 610
R K ++ I+ + L S+ L+ A+ CK L L
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL---LTT 272
Query: 611 RDELKLCTEILSEILSFLYKKKRTCEVGGKVNNILHHD--LELLCLSTLDMLIQTVLIII 668
R ++ FL T + L D LL L LD Q + +
Sbjct: 273 RF---------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREV 322
Query: 669 DRATPVLGSLVACLIGLLQLLDESHYKKLWEELGDKKPLKDFLLRAFLVL---------R 719
P +I + D W+ + K L + + VL
Sbjct: 323 LTTNP----RRLSIIAES-IRDGLATWDNWKHVNCDK-LTTIIESSLNVLEPAEYRKMFD 376
Query: 720 DLVKQDVFPPD-----------WLVMRMVTNQVILTALGHLAPPLIYWFLDSRGAFAYQV 768
L VFPP W + V++ L H + +S +
Sbjct: 377 RLS---VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKEST----ISI 428
Query: 769 WSNYFNLAVSFLTQPSLQLEKFSDVKREKIIEKYGDMRVQMGFQILKVW------SSLGE 822
S Y L V + +L I++ Y + ++ + S +G
Sbjct: 429 PSIYLELKVKLENEYAL---------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 823 HKINFIPSMVGPFLEVTLVPENELRKATLNIFFDMMECEQRVHGNFKQVESELIDKLDIL 882
H + E
Sbjct: 480 H---------------------------------LKNIEH-------------------- 486
Query: 883 ISDNKGDDEYRQLFNTILLD------RVQNEDPQWKETGSAFISSVTRLLERLLDYRSVI 936
E LF + LD +++++ W +GS + L++L Y+ I
Sbjct: 487 -------PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS-----ILNTLQQLKFYKPYI 534
Query: 937 QGDENRDKRMSCTVNLLNFYKNEINRKEMYLRYIYKLHDLHRPADNFTEAGFTLKLYADS 996
++ + +R+ +L+F + + E L K DL R A + ++ ++
Sbjct: 535 CDNDPKYERLVNA--ILDF----LPKIEENL-ICSKYTDLLRIALMAEDEA----IFEEA 583
Score = 63.3 bits (153), Expect = 6e-10
Identities = 85/649 (13%), Positives = 176/649 (27%), Gaps = 199/649 (30%)
Query: 8 SCVQLYQVHLQSSEKTQDI-----SARGTMRKKE-------PQGKFLTHHLYLCMRDFGH 55
+ V + D + + K+E T L+ +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 56 HIGEDTEIYFSLYDGKKSKFLSERFLVK-----ISKEGFSNYVEKLNSNRTIFTDLGTAD 110
+ + + KFL + + + ++L ++ +F
Sbjct: 77 EM---VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---- 129
Query: 111 LNKDIHVVAHIFRMGRMLYSESTKKLTASLTHSSLAPSGGVVAFKRPYGVAVLEIGDMMA 170
++ R+ + KL +L L P+ V+ G +
Sbjct: 130 ---------NVSRL------QPYLKLRQAL--LELRPAKNVLI----DG---------VL 159
Query: 171 TPGSEEREFMFKVKRNDLYLILERGEFEKGGKSTGKNIEVTVQVLDSDGTVLQNC---LW 227
GS GK+ V + V S + W
Sbjct: 160 --GS--------------------------GKTW-----VALDVCLSYKVQCKMDFKIFW 186
Query: 228 GASGSDTSSEYHSMI-----IYHHNSPCWSEIIRLAVPIE-RYQSSHIRL-------EYR 274
+ S E +++ + + P W+ + I+ R S L Y
Sbjct: 187 LNLKNCNSPE--TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 275 HC------------------------STRDK--ADNKKLLGFSFARLMEPSGATLQDCQH 308
+C +TR K D + L S D
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 309 ELFIYRC---------EERSKLDPGHYLGLASTVQEAQAGTVPIPYKTDSAHYACSHKES 359
L + + E +P +A ++++ A +K H C +
Sbjct: 305 SLLL-KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA--TWDNWK----HVNCDKLTT 357
Query: 360 V---FIRTLLCSTKLTQ-----------NVEI----LNLLKW----REHPEKIQEALNQA 397
+ + L + + I L+L+ W + + L++
Sbjct: 358 IIESSLNVL--EPAEYRKMFDRLSVFPPSAHIPTILLSLI-WFDVIKSDVMVVVNKLHKY 414
Query: 398 LCLEGQ--ELVKFLQDILDALFSMFSTEDGNSTMHSGLVFHVLTHIFSLLYDSKGLITSI 455
+E Q E + I + + +H +V H +DS LI
Sbjct: 415 SLVEKQPKESTISIPSI---YLELKVKLENEYALHRSIVDHYNIP---KTFDSDDLIPPY 468
Query: 456 ------QHCADYVSSTEKQEPIQKCFRSLEYV-FKFIIESRLLFSRATGGQYE-EGFQRD 507
H ++ + E E + FR + ++ F+F +E ++ R + G +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTL-FRMV-FLDFRF-LEQKI---RHDSTAWNASGSILN 522
Query: 508 LFAVFNALNSMLSVS---YDIILDTQVTF--KSGWVTLNRDYQLILEVA 551
+ + Y+ +++ + F K + Y +L +A
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Score = 52.5 bits (125), Expect = 1e-06
Identities = 97/668 (14%), Positives = 184/668 (27%), Gaps = 187/668 (27%)
Query: 153 AFKRPYGVAVLEIGDMM-ATPGSEEREFMFKVKRND--LYLILERGEFEKGGKSTGKNIE 209
AF + ++ DM + EE + + K + + + +
Sbjct: 28 AFVDNFDCK--DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF--WTLLSKQEEMVQ--K 81
Query: 210 VTVQVLDSDGTVLQNCLWGASGSDTSSEYHSMIIYH---HNSPCWSEIIRLAVPIERYQS 266
+VL + L + S I +N + V +
Sbjct: 82 FVEEVLRINYKFLMSP-IKTEQRQPSMMTRMYIEQRDRLYNDN--QVFAKYNVSRLQ--- 135
Query: 267 SHIRLEYRHCSTRDKADNKKLL--GFSFARLMEPSG------ATLQD----CQHELFIY- 313
+++L R + K +L G + SG C+ + I+
Sbjct: 136 PYLKL--RQALLELR-PAKNVLIDG------VLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 314 -----RCEERSKLDPGH--YLGLASTVQEAQAGTVPIPYKTDSAHYACSHKESVFIRTLL 366
+ L+ + + I + S
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-------------- 232
Query: 367 CSTKLTQNVEILNLLKWREHPEKIQEALNQALCLEGQELVKFLQDILDA-LFSMFS---- 421
E+ LLK + + CL LV L ++ +A ++ F+
Sbjct: 233 ---------ELRRLLKSKPYEN----------CL----LV--LLNVQNAKAWNAFNLSCK 267
Query: 422 ----TEDGNSTMHSGLVFHVLTHIFSLLYDSKGLIT--SIQHCADYVSSTEKQEPIQKCF 475
T T L THI SL + S L Y+ + P +
Sbjct: 268 ILLTTRFKQVT--DFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 476 RSLEYVFKFIIES-RLLFSRATGGQYEEGFQRDLFAVFNALNSMLSVSYDIILDTQVTFK 534
+ I ES R + + ++ + L +++ S + +L+
Sbjct: 325 TNP-RRLSIIAESIRDGLATW------DNWKHVN---CDKLTTIIESSLN-VLEP----- 368
Query: 535 SGWVTLNRDYQLILEV----AKFASDMLECL----GKREAQPLLTKAKLECIKNLVSGKL 586
R L V A + +L + K + ++ K L L
Sbjct: 369 ----AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--------LHKYSL 416
Query: 587 FSED--ESRSYLLARICKHLRLHLAHRDELKLCTEILSEILSFLYKKKRTCEVGGKV--- 641
+ ES + + +L L + +E L I+ Y +T + +
Sbjct: 417 VEKQPKESTISIPSI---YLELKVKLENEYALHRSIVDH-----YNIPKTFDSDDLIPPY 468
Query: 642 ------NNILHH--------DLELLCLSTLDM-LIQTVLIIIDRATPVLGSLVACLIGLL 686
++I HH + L + LD ++ + A GS++
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN------ 522
Query: 687 QLLDESHYKKLWEELGDKKP--------LKDFLLRAFLVL-----RDLVKQDVFPPDWLV 733
L YK + D P + DFL + L DL++ + D +
Sbjct: 523 TLQQLKFYKPY---ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 734 MRMVTNQV 741
QV
Sbjct: 580 FEEAHKQV 587
Score = 33.7 bits (76), Expect = 0.69
Identities = 50/380 (13%), Positives = 105/380 (27%), Gaps = 105/380 (27%)
Query: 2 VDPATMSCVQLYQVHLQSS---EKTQDISAR--GTMRKKEPQGKFLTHHLYLCMRDFGHH 56
+ AT + + L H + ++ + + + + P+ T+ L +
Sbjct: 281 LSAATTTHISL--DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI------ 332
Query: 57 IGE------DTEIYFSLYDGKKSKFLSERFLVKISKEGFSNYVEKLNSN--RTIFTDLGT 108
I E T + + K L+ +++ S + L R +F L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDK---LTT--IIESS-------LNVLEPAEYRKMFDRLSV 380
Query: 109 ADLNKDIHVVAHIFRM--GRMLYSESTKKLTASLTHSSLAPSGGVVAFKRPYGVAVLEIG 166
H+ + + ++ S+ + L SL
Sbjct: 381 --FPPSAHIPTILLSLIWFDVIKSD-VMVVVNKLHKYSLV-------------------- 417
Query: 167 DMMATPGSEEREFMFKVKRNDLYLILERGEFEKGGKSTGKNIEVTVQVLDSDGTVLQNCL 226
E++ + +YL L+ + ++D
Sbjct: 418 --------EKQPKESTISIPSIYLELK--------VKLENEYALHRSIVDHYNIPKTFDS 461
Query: 227 WGASGSDTSSEYHSMIIYHHNSPCWSEIIRLAVPIERYQS-SHIRLEYRHCSTRDKADNK 285
++S I +H ++ ER + L++R + + D+
Sbjct: 462 DDLIPPYLDQYFYSHIGHH---------LKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 286 KLLGFSFARLMEPSGATLQDCQHELFIYR---CEERSKLDPGHYLGLASTVQE--AQAGT 340
TLQ L Y+ C+ DP Y L + + + +
Sbjct: 513 AWNASG------SILNTLQQ----LKFYKPYICDN----DP-KYERLVNAILDFLPKIEE 557
Query: 341 VPIPYK-TDSAHYACSHKES 359
I K TD A ++
Sbjct: 558 NLICSKYTDLLRIALMAEDE 577
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.9 bits (186), Expect = 9e-14
Identities = 123/630 (19%), Positives = 198/630 (31%), Gaps = 191/630 (30%)
Query: 413 LDALFSM--FSTEDGNSTMHSGLVFHVLTHIF---SLLYDSKGLITSIQHCADYVSSTEK 467
+DA S + G S H V T F S L + + +
Sbjct: 1 MDAY-STRPLTLSHG-SLEHV---LLVPTASFFIASQLQEQ--FNKILPEPTE--GFAAD 51
Query: 468 QEPIQKCFRSLEYVFKFI--IESRLLFSRATGGQYEE-------GFQRDLFAVFNALNSM 518
EP E V KF+ + S + + GQ+++ F+ + N +++
Sbjct: 52 DEPTT----PAELVGKFLGYVSSLV--EPSKVGQFDQVLNLCLTEFENC-YLEGNDIHA- 103
Query: 519 LSVSYDIILDTQVTFKSGWVTLNRDYQLILEVAKFASDMLECLGKREAQPLLTKAKLECI 578
L+ DT + + ++Y +AK D K+ L
Sbjct: 104 LAAKLLQENDTTLVKTKELI---KNYITARIMAKRPFD------KKSNSALFRAVG---- 150
Query: 579 KNLVSGK-----LF-----SEDESRSYLLARICKHLR-LHLAHRDELKLCTEILSEILSF 627
G +F ++D Y + LR L+ + + + +E LS
Sbjct: 151 ----EGNAQLVAIFGGQGNTDD----YF-----EELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 628 LYKKKRTCEVGGKVNNILHHDLELLC-LSTLDMLIQTVLIIIDRATP----VLGSLVAC- 681
L + E + L +L L TP +L ++C
Sbjct: 198 LIRTTLDAEK------VFTQGLNILEWLENPS------------NTPDKDYLLSIPISCP 239
Query: 682 LIGLLQLLDESHYKKLWEELGDKKP--LKDFLLRAFLVLRDLVKQDVF--PPDW-----L 732
LIG++QL +HY + LG P L+ +L A + LV W
Sbjct: 240 LIGVIQL---AHYVVTAKLLG-FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 733 VMRMVTNQVILTALG---HLA------PPLIYWFLDS----RGAFAYQVWSNYFNLAVSF 779
V + +T +L +G + A PP I DS G + L++S
Sbjct: 296 VRKAIT---VLFFIGVRCYEAYPNTSLPPSIL--EDSLENNEGVPSPM-------LSISN 343
Query: 780 LTQPSLQ--LEKF-SDVKREKIIEK------------------YGDMRVQMGFQILKVWS 818
LTQ +Q + K S + K +E YG + + + K S
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG---LNLTLRKAKAPS 400
Query: 819 SLGEHKINF---IPSMVGPFLEVTLVPENE--LRKATLNIFFDMMECEQRVHGNFKQVES 873
L + +I F FL V P + L A+ I D+++ +
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVA-SPFHSHLLVPASDLINKDLVKNNVSFNAK------ 453
Query: 874 ELIDKLDILISD-NKGDDEYRQLFNTILLDRVQN--EDP-QWKET-----------GSAF 918
+ I + D G D R L +I V P +W+ T G
Sbjct: 454 ----DIQIPVYDTFDGSD-LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 919 ISSVTRLLERLLDYR--SVIQG---DENRD 943
S + L R D VI D N D
Sbjct: 509 ASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 62.4 bits (151), Expect = 1e-09
Identities = 111/673 (16%), Positives = 171/673 (25%), Gaps = 303/673 (45%)
Query: 892 YRQL---FNTILLDR----VQNEDPQWKETGSAFISSVTRLLERLLDYRSVIQGDENRDK 944
QL FN IL + +++P ++ L+ + L Y S
Sbjct: 30 ASQLQEQFNKILPEPTEGFAADDEP----------TTPAELVGKFLGYVS----SLVEPS 75
Query: 945 RMSCTVNLLNFYKNEINRKEMYLRYIYKLHDLHR-----PADNFTEAG---FTLKLYADS 996
++ +LN E YL +D+H +N T +K Y +
Sbjct: 76 KVGQFDQVLNLCLTEFENC--YLE----GNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 997 LSWTSSAPLINDPMCQP------NGAPEWYRKEQLYY------EIISYFDKGKCWEKGIP 1044
+ P + E QL YF+
Sbjct: 130 RI------MAKRPFDKKSNSALFRAVGE--GNAQLVAIFGGQGNTDDYFE---------- 171
Query: 1045 LCKELADLYE------KRLFDY--KKLSNILQTQAQFCD------NILNQL-----RPEP 1085
EL DLY+ L + + LS +++T NIL L P+
Sbjct: 172 ---ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 1086 EYFRVGFYGLSFPL-----FVRNKVFVYR-GLAYERM----------------------- 1116
+Y +S PL V G +
Sbjct: 229 DYLL--SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 1117 ---EAFTQ--------------RLQTEFPSANILSKNSPPSHTIQQSDVQYIQICNVKPL 1159
E+F R +P+ ++ PPS I + ++
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL-----PPS--ILEDSLE---------- 329
Query: 1160 PERGPPCINPPLAPVPDKIAQYYQVNDVRTFQLDRPMHKGPIDKDNEFKSLWLERTIMTI 1219
G P P L+ ++++ Q+ ++K N L + + I
Sbjct: 330 NNEGVPS--PMLS-----------ISNLTQEQVQD-----YVNKTN--SHLPAGKQV-EI 368
Query: 1220 SSPLPGILRWFEVVESNVDLENPGLQGTIDANVMGGIAKYQQAFFTPEFARGYPQYIPYI 1279
S L N V ++ G PQ
Sbjct: 369 S------------------LVN-----GAKNLV---VS-------------GPPQS---- 385
Query: 1280 NRLHILILEQVDVLENGLVVHGQLAPPGV-Q---PLHKR---LQERFAGLRQSIRKPPTE 1332
L+ L L + AP G+ Q P +R RF L P
Sbjct: 386 --LYGLNLT----------LRKAKAPSGLDQSRIPFSERKLKFSNRF--L-------PVA 424
Query: 1333 SIIHSP-LPPVPDQYI------NAGYH------PV---EEGED---------------IY 1361
S HS L P D N ++ PV +G D I
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 1362 SRPGD------------LDLGEGD--GEAPCLPQRPRSAGYGTLPPADKPKPAHQRLPSK 1407
P LD G G G L R + G G R+
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGLGV-LTHRNK-DGTGV------------RVIVA 530
Query: 1408 SSVHKRQSSDSGF 1420
++ D GF
Sbjct: 531 GTLDINPDDDYGF 543
Score = 56.2 bits (135), Expect = 1e-07
Identities = 102/648 (15%), Positives = 175/648 (27%), Gaps = 258/648 (39%)
Query: 771 NYFNLAVSFLTQPSL-----QL-EKFSDVKREKIIEKYGDMRVQMGFQILKVWSSLGE-- 822
++ +L L + QL E+F+ + E D ++ E
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP----------TTPAELV 61
Query: 823 -HKINFI-----PSMVGPFLEVTLVPENELRKATLNIFFDMMECEQRV-HGNFKQVESEL 875
+ ++ PS VG F +V L F E GN
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVL--------NLCLTEF------ENCYLEGN-------- 99
Query: 876 IDKLDI------LISDNKGDDEYRQ-LFNTILLDRVQNEDPQWKETGSAFISSVTRLLER 928
DI L+ +N + L + R+ + P K++ SA +V +
Sbjct: 100 ----DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 929 LLDYRSVI---QGDENRDKRMSCTVNLLNFYKNEINRKEMYLRYIYKLHDLHRPADNFTE 985
L I QG+ + Y E+ +++Y Y + DL
Sbjct: 156 L--V--AIFGGQGNTDD-------------YFEEL--RDLYQTYHVLVGDL------IKF 190
Query: 986 AGFTL-----------KLYA---DSLSWTSSAPLINDPMCQPNGAPEWYRKEQLYYEIIS 1031
+ TL K++ + L W + +P P + Y L IS
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEW------LENPSNTP---DKDY----LLSIPIS 237
Query: 1032 YFDKGKCWEKGIPL------------CKELADLYEKRLFDYKK-LSNILQ---------- 1068
PL K L L Y K + Q
Sbjct: 238 C-----------PLIGVIQLAHYVVTAKLL-GFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 1069 --TQAQFCDNILNQLRPEPEYFRVGFYG-LSFP-LFVRNKV---------------FVYR 1109
+ F ++ + F +G ++P + +
Sbjct: 286 TDSWESFFVSVRKAIT---VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 1110 GLAYERMEAFTQRLQTEFPSANILS---KNS--------PPS---------------HTI 1143
L E+++ + + + P+ + N PP +
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 1144 QQSDVQYIQICNVKPLPERGP-------PCINPP-----LAPVPDKIAQYYQVNDVRTF- 1190
QS + P ER P + P L P D I + N+V +F
Sbjct: 403 DQSRI---------PFSERKLKFSNRFLP-VASPFHSHLLVPASDLINKDLVKNNV-SFN 451
Query: 1191 --QLDRPMHKGPIDKDN--EFKSLWLERTIMTISSPLPGILRWFEVVESN----VDLENP 1242
+ P++ D + ER + I LP ++W + +D P
Sbjct: 452 AKDIQIPVY-DTFDGSDLRVLSGSISERIVDCIIR-LP--VKWETTTQFKATHILDF-GP 506
Query: 1243 G------------LQGT----IDANVMGGIAKYQQAFFTPEFARGYPQ 1274
G GT I A + P+ G+ Q
Sbjct: 507 GGASGLGVLTHRNKDGTGVRVIVAGTLDI---------NPDDDYGFKQ 545
Score = 45.0 bits (106), Expect = 2e-04
Identities = 91/595 (15%), Positives = 173/595 (29%), Gaps = 198/595 (33%)
Query: 44 HHLYLCMRD-FGHHIGEDTEIYFSLYDGKKSKF-LSERFLVKISKEGF-SNYVEKLNSN- 99
+ +++ F + E TE F+ D + L +FL G+ S+ VE
Sbjct: 27 FFIASQLQEQFNKILPEPTE-GFAADDEPTTPAELVGKFL------GYVSSLVEPSKVGQ 79
Query: 100 -----RTIFTDLGTADL-NKDIHVVAHIFRMGRMLYSESTKKLTASLTHSSLAPSGGVVA 153
T+ L DIH +A A L +
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALA------------------AKLLQENDTTLVKTKE 121
Query: 154 FKRPYGVAVLEIGDMMATPGSEERE--FMFKVKRND--LYLILERGEFEKGGKSTGKNIE 209
+ Y A + P ++ V + L I F GG+ G N +
Sbjct: 122 LIKNYITARIMAK----RPFDKKSNSALFRAVGEGNAQLVAI-----F--GGQ--G-NTD 167
Query: 210 VTVQVLDSDGTVLQNCLWGASGSDTSSEYHSMIIYHHNSPCWSEIIRLAVPIERYQSSHI 269
+ L++ L+ T YH ++ ++I+ +
Sbjct: 168 DY---FEE----LRD-LY-----QT---YHVLV---------GDLIKFSAE--------- 193
Query: 270 RLEYRHCSTRDKADNKKLL--GFSFAR-LMEPSGATLQDCQHELFIYRCEERSKLDPGH- 325
L R D +K+ G + L PS P
Sbjct: 194 TLSEL---IRTTLDAEKVFTQGLNILEWLENPSNT---------------------PDKD 229
Query: 326 YLGLASTVQEAQAGTVPIPYKTDSAHYACSHKESVFIRTLLCSTKLTQNVEILNLLKWR- 384
YL L+ + + P+ AHY V + L + E+ + LK
Sbjct: 230 YL-LSIPI------SCPLIGVIQLAHYV------VTAKLLGFTPG-----ELRSYLKGAT 271
Query: 385 EHPEKIQEALNQALCLEGQELVKFLQDILDALFSM-------FSTEDGNSTMHSGLVFH- 436
H + + A+ A + ++ + LF + + ++ + +
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 437 --VLTHIFSLLYDSKGLITSIQHCADYVSSTEKQEPIQK-----------CF------RS 477
V + + S+ L + + DYV+ T P K +S
Sbjct: 332 EGVPSPMLSI----SNL--TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 478 LEYVFKFIIESRLLFSRATGGQYEEGF-QRDL---------FAVFNALNSMLSVSYDIIL 527
L + R + + Q F +R L + F+ + +L + D+I
Sbjct: 386 LY---GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH--SHLLVPASDLIN 440
Query: 528 DTQVTFKSGWVTLNRDYQLILEVAKF----ASDMLECLGKREAQPLLTKAKLECI 578
V+ N +++ + SD+ R +++ ++CI
Sbjct: 441 K---DLVKNNVSFNAKD---IQIPVYDTFDGSDL------RVLSGSISERIVDCI 483
Score = 41.2 bits (96), Expect = 0.003
Identities = 49/236 (20%), Positives = 80/236 (33%), Gaps = 83/236 (35%)
Query: 4 PATM-SCVQLYQVHLQSS-EKTQDISARGTMRKKEPQGKFLTHHLYLCM----RDF---G 54
P+ M S L Q +Q KT P GK + + + ++ G
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKT---------NSHLPAGK----QVEISLVNGAKNLVVSG 381
Query: 55 H---------HI-------GED-TEIYFSLYDGKKSKFLSERFLVKISKEGF-SNYVEKL 96
+ G D + I FS +K KF S RFL ++ F S+ +
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFS---ERKLKF-SNRFLP-VA-SPFHSHLLVP- 434
Query: 97 NSNRTIFTDLGTADLN---KDIHV-VAHIF--------------RMGRMLYS-----EST 133
++ I DL +++ KDI + V F R+ + E+T
Sbjct: 435 -ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 134 KKLTASLTH------SSLAPSGGVVA-FKRPYGVAVLEIGDMMATPGSEEREFMFK 182
+ A TH + G + K GV V+ G + P + ++ FK
Sbjct: 494 TQFKA--THILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP---DDDYGFK 544
Score = 40.0 bits (93), Expect = 0.007
Identities = 86/465 (18%), Positives = 127/465 (27%), Gaps = 181/465 (38%)
Query: 10 VQLYQVHLQSSEKTQDI-----SARGTMRK---KEPQGKFLTH------HLYLCMRDFGH 55
+L Q + + KT+++ +AR ++ K+ L FG
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI---FG- 161
Query: 56 HIGE-DTEIYF----SLYDGKKSKFLSERFLVKISKEGFSNYVEKLNSNRTIFTD----- 105
G+ +T+ YF LY + + L+K S E S + +FT
Sbjct: 162 --GQGNTDDYFEELRDLYQTYHV-LVGD--LIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 106 --LGTADLNKD-------------IHVV--AHIFRMGRML---YSESTKKLTASLTHSSL 145
L D I V+ AH ++L E L + HS
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ- 275
Query: 146 APSGGVVAFKRPYGVAVLEIGDMMATPGSEEREFMFKVKR--NDLYLI------------ 191
G+V AV +A S E F V++ L+ I
Sbjct: 276 ----GLVT-------AVA-----IAETDSWE-SFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 192 ---------LERGEFEKGGKS-----TG-------KNIEVTVQVLDSDGTV---LQN--- 224
LE E G S + + T L + V L N
Sbjct: 319 LPPSILEDSLENNE---GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 225 ---------CLWG----------ASGSDTS----SE---------------YHSMIIYHH 246
L+G SG D S SE +HS H
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS----HL 431
Query: 247 NSPCWSEII-RLAVPIERYQSSHIRLE-YRHCSTRDKADNKKL---LGFSFARLM--EP- 298
P I L + + I++ Y T D +D + L + + P
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVY---DTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 299 --SGATLQDCQHEL-FIYRCEERSKLDPGHYLGLASTVQEAQAGT 340
T H L F PG GL + GT
Sbjct: 489 KWETTTQFKATHILDF----------GPGGASGLGVLTHRNKDGT 523
Score = 38.9 bits (90), Expect = 0.019
Identities = 45/255 (17%), Positives = 80/255 (31%), Gaps = 67/255 (26%)
Query: 1292 VLENGLVVHGQLAPPGVQPLHKRLQERFAGLRQSIRKPPTESIIHS--PLPPVP--DQYI 1347
L +G + H L P + +LQE+F I PTE P P +++
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQF----NKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 1348 NAGY--HPVEE-----------------------GEDIYSRPGDLDLGEGDGEAPCLPQR 1382
GY VE G DI++ L L E D +
Sbjct: 66 --GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL-LQENDTTLVKTKEL 122
Query: 1383 PRSAGYGTLPPADKPKPAHQRLPSKSSVHKRQSSDSGFSSCTA------HMRNSWSE--- 1433
++ A +P S S++ ++ G + A + + + E
Sbjct: 123 IKNY-ITARIMAKRPFDK----KSNSALF--RAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 1434 TYEEAPPLPPRGFTPDKRSSGEPPSLHRRQDSISQRDSSYSDNISVYE----DCVVPNTS 1489
Y+ L + S E +L + + ++ +++ E P+
Sbjct: 176 LYQTYHVL-VGDLI---KFSAE--TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 1490 FLFSTGSTSPSSPCP 1504
+L + P S CP
Sbjct: 230 YL----LSIPIS-CP 239
Score = 32.3 bits (73), Expect = 1.5
Identities = 58/356 (16%), Positives = 94/356 (26%), Gaps = 151/356 (42%)
Query: 124 MGRMLY--SESTKKL--TASLTHSSLAPSGGVVAFKRPYGVAVLEIGDMMATPGSEEREF 179
MG LY S++ + + A H FK YG ++L+I
Sbjct: 1631 MGMDLYKTSKAAQDVWNRAD-NH-----------FKDTYGFSILDI-------------- 1664
Query: 180 MFKVKRNDLYL-ILERGEFEKGGKSTGKNIEVTVQVLDSDGTVLQNCLWGASGSDTSSEY 238
V N + L I GE GK +N + DG + ++ ++S
Sbjct: 1665 ---VINNPVNLTIHFGGE---KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS-- 1716
Query: 239 HSMIIYHHNSPCWSEIIRL---AVPIERYQSSHIRLEYRHCSTRDKADNKKLLGFSFA-- 293
+ ++ P A L A
Sbjct: 1717 ---YTFRS--E--KGLLSATQFTQP---------------------A----LTLMEKAAF 1744
Query: 294 RLMEPSGATLQDCQHELFIYRCEERSKLDPGHYLG----LASTVQEAQAGTVPIPYKTDS 349
++ G D F GH LG LA + A + I
Sbjct: 1745 EDLKSKGLIPADA---TFA-----------GHSLGEYAALA-----SLADVMSI---ESL 1782
Query: 350 AHYACSHKESVFIRTLLCSTKLTQ------NVEILNLLKWREHPEKIQEALNQALC---- 399
E VF R + + + N ++ + R QEAL Q +
Sbjct: 1783 V-------EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL-QYVVERVG 1834
Query: 400 -------------LEGQELV--------KFLQDILD----------ALFSMFSTED 424
+E Q+ V + ++L+ L S E+
Sbjct: 1835 KRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.025
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 30/53 (56%)
Query: 957 KNEINRKEMYLRYIYKLHDLHRPADNFTEAGFTLKLYADSLSWTSSAP-L-IN 1007
K + K KL +A +LKLYAD SAP L I
Sbjct: 19 KQAL--K--------KL-----------QA--SLKLYAD-----DSAPALAIK 43
Score = 34.9 bits (79), Expect = 0.075
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 10/36 (27%)
Query: 131 ESTKKLTASLTHSSL-AP-SGGVVAFKRPYGVAVLE 164
++ KKL ASL L A S +A K A +E
Sbjct: 20 QALKKLQASL---KLYADDSAPALAIK-----ATME 47
Score = 30.3 bits (67), Expect = 2.5
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 14/38 (36%)
Query: 1323 RQSIRKPPTESIIHSPLPP-VPDQ----YINAGYHPVE 1355
+Q+++K + + L D I A +E
Sbjct: 19 KQALKK------LQASLKLYADDSAPALAIKA---TME 47
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic,
hydrolase/transferase complex; 3.35A {Homo sapiens}
SCOP: d.14.1.4 d.101.1.1
Length = 272
Score = 33.3 bits (76), Expect = 0.56
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 172 PGSEEREFMFKVKRNDLYLILERGEFEKGGKSTGKNIEVTVQVLDSDGTVLQNCLWGAS 230
G EERE ++ + ++ +EV+ +L+ G+ L L A+
Sbjct: 115 GGCEERELALALQEALEPAVRLGRYP----RAQ---LEVSALLLEDGGSALAAALTAAA 166
>1pzw_A Transcription factor grauzone; dimerization, transcription
regulation, treble-CLEF zinc FIN transcription; 2.00A
{Drosophila melanogaster} SCOP: g.39.1.10
Length = 80
Score = 29.5 bits (66), Expect = 1.5
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 586 LFSEDESRSYLLARICKHLRLHLAHRDELK--LCTEILSEILSF 627
+F D S + + +H + DE+ +C +++ F
Sbjct: 19 IFDVDSGESKVAEVLRQHFWFEVLPNDEISKVICNVCWTQVSEF 62
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair,
DNA binding protein; 3.41A {Mus musculus}
Length = 1323
Score = 32.2 bits (72), Expect = 1.7
Identities = 46/361 (12%), Positives = 115/361 (31%), Gaps = 44/361 (12%)
Query: 377 ILNLLKWREH-------PEKIQEALNQALCLEGQELVKFLQDILD---------ALFSMF 420
I+N LKW + ++ + ++ A + + L +IL L +
Sbjct: 142 IINQLKWLDRIVDGKDLTAQMMQLISVAPVNLQHDFITSLPEILGDSQHANVGKELGELL 201
Query: 421 STED----------GNSTMHSGLVFHVLTHIFSLLYDSK-----GLITSIQHCADYVSST 465
+ + + + + L + ++ + H +S
Sbjct: 202 VQNTSLTVPILDVFSSLRLDPNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSL 261
Query: 466 EKQEPIQKCFRSLEYVFKFIIESRLLFSRATGGQYEEGFQRD-----LFAVFNALNSMLS 520
E +++ +++ I++ ++ G G Q + + VF+ + S +
Sbjct: 262 EVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIR 321
Query: 521 VSYDIILDTQVTFKSGWVTLNRDYQLILEVAKFASDMLECLGKREAQPLL-TKAKLECIK 579
I + + +++ + V K+ + LL K + +CI+
Sbjct: 322 YEKTISEAWFKAIER--IESAAEHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQ 379
Query: 580 NLVSGKLFSEDESRSYLLARICKHLRLHLAHRDELKLCTEILSEILSFLYKKKRTCEVGG 639
+ FS + L L H + ++ S + + +K T
Sbjct: 380 EQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRII-LFGSLLYKYAFKFFDTYCQQE 438
Query: 640 KVNNILHH---DLELLCLSTLDMLIQTVLIIIDRATPVLGSLVACLIGLLQLLDESHYKK 696
V ++ H E + LD+L++ +++ + L L+ + +K
Sbjct: 439 VVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNAAFVKGIL-DYLENMSPQQIRK 497
Query: 697 L 697
+
Sbjct: 498 I 498
>2qwz_A Phenylacetic acid degradation-related protein; putative
thioesterase, structural genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter
SP}
Length = 159
Score = 30.5 bits (69), Expect = 2.0
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 703 DKKPLKDFLLRAFLVLRDLVKQDVFPPDWLVMRMVTNQVILTALGHLAPPLIYWFLDSRG 762
DK L +L F ++ D + MR+ + L G ++ P ++ D
Sbjct: 25 DKDGLSAYLEEVFPQIQGEFSIDALAKGEITMRLNVQERHLRPGGTVSGPSMFALADVSV 84
Query: 763 AFAYQVWSNYF--------NLAVSFL 780
V ++ N ++ F+
Sbjct: 85 YAL--VLAHLGREALAVTTNASLDFM 108
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA-
binding, transport, tRNA processing, tRNA-binding, RNA
binding protein; 3.10A {Schizosaccharomyces pombe} PDB:
3icq_T*
Length = 980
Score = 31.8 bits (71), Expect = 2.3
Identities = 23/158 (14%), Positives = 45/158 (28%), Gaps = 6/158 (3%)
Query: 594 SYLLARICKHLRLHLA--HRDELKLCTEILSEILSFLYKKKRTCEVGGKVNNILHHDLEL 651
YL R K ++ + L + ++L+ +S + + +L
Sbjct: 558 WYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQL 617
Query: 652 LCLSTLDMLIQTVLIIIDRATPVLGSLVACLIGLLQLLDESHYKKLWEELGDKKPLKDFL 711
T+ +LI + + + SL+ LIG S L + L
Sbjct: 618 YLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIG 677
Query: 712 LRAFLVLRDLVKQDVFPPDWLVMRMVTNQVILTALGHL 749
+ + WL + I L +
Sbjct: 678 ----NFAKGFPARGSEEVAWLASFNKASDEIFLILDRM 711
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A
{Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Length = 326
Score = 29.9 bits (68), Expect = 6.2
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 502 EGFQRDLFAVFNALNSML-SVSYDIILDTQVTFKSGWVTL 540
F + A A L + +YD ++D Q KS +
Sbjct: 65 AWFSAPIKAERKAFREALQAKNYDAVIDAQGLVKSAALVT 104
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 237
Score = 29.7 bits (67), Expect = 6.4
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 158 YGVAVLEIGD--MMATPGSEEREFMFKVKRNDLYLILERGEFEKGGKSTGKNIEVTVQVL 215
+ A LE+ + PG E+ ++ ++L +++ I V +QV+
Sbjct: 73 FNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHP----RTS---ITVVLQVV 125
Query: 216 DSDGTVLQNCLWGAS 230
G++L CL A
Sbjct: 126 SDAGSLLACCLNAAC 140
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake
regulator, structural genomics, protein structure
initiative, PSI; 2.50A {Geobacillus stearothermophilus}
SCOP: a.7.12.1
Length = 217
Score = 29.1 bits (66), Expect = 8.9
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 879 LDILISDNKGDDEYRQLFNTILLDRVQNEDPQWKETGSAFISSVTRLLERLLDY 932
I D++ D++Y ++ ++L V D + V R +ER D+
Sbjct: 146 AQIADMDHRVDEQYGEMMASLL--AVAKTDAATLAQMNVLA-LVARYIERTADH 196
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide
repeat, 3-helix bundle, phosphorelay signa transduction,
phosphatase; 2.19A {Bacillus subtilis}
Length = 378
Score = 29.4 bits (66), Expect = 9.9
Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 1020 YRKEQLYYEIISYFDKGKCWEKGIPLCKELADLYEKRLFDYKK 1062
E+ ++++SYF+K + A ++E +++
Sbjct: 313 TVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES-SCHFEQ 354
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 23,767,571
Number of extensions: 1455346
Number of successful extensions: 2640
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2582
Number of HSP's successfully gapped: 50
Length of query: 1561
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1455
Effective length of database: 3,742,167
Effective search space: 5444852985
Effective search space used: 5444852985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.8 bits)