RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8415
(1561 letters)
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 34.7 bits (78), Expect = 0.11
Identities = 55/490 (11%), Positives = 138/490 (28%), Gaps = 26/490 (5%)
Query: 388 EKIQEALNQALCLEGQELVKFLQDILDALFSMFSTEDGNSTMHSGLVFHVLTHIFSLLYD 447
+++ + + + +++D+ D + + + I L D
Sbjct: 541 QQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKER-AISCMGQIICNLGD 599
Query: 448 SKG--LITSIQHCADYVSSTEKQEPIQKCFRSLEYVFKFIIESRLL--FSRATGGQYEEG 503
+ G L ++Q + + + + K + I +L +
Sbjct: 600 NLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKN 659
Query: 504 FQRDLFAVFNALNSML-SVSYDIILDTQVTFKSGWVTLNRDYQLILEVAKFASDMLECLG 562
+ +AL+ ++ + S + L + + + +
Sbjct: 660 QRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKV 719
Query: 563 KREAQPLLTKAKLECIKNLVSGKLFSEDESRSYLLARICKHLRLHLAHRDELKLCTEILS 622
+ ++ + L + LV L + + S +L + + + L +
Sbjct: 720 YPSSLSKISGSILNELIGLVRSPLL-QGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTG 778
Query: 623 EILS--FLYKKKRTCEVGGKVNNILHHDLELLCLSTLDMLIQTVLIIIDRATPVLGSLVA 680
+ S K++ K L + + IQ V + L +L
Sbjct: 779 PVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLAL-L 837
Query: 681 CLIGLLQLLDESHYKKLWEELGD--KKPLKDFLLRAFLVLRDLVKQ--DVFPPDWLVMRM 736
L + +D S +L + + P ++ A L + + P L
Sbjct: 838 SLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEIT 897
Query: 737 VTNQVILTALGHLAPPLIYWFLDSRGAFAYQVWSNYFNLAVS----FLTQPSLQLEKFSD 792
+ L L + + + +W+ + L K +
Sbjct: 898 SQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTL 957
Query: 793 VKREKIIE------KYGDMRVQMG--FQILKVWSSLGEHKINFIPSMVGPFLEVTLVPEN 844
+ E ++ G + + S + + + +G FL+ P+
Sbjct: 958 IDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDL 1017
Query: 845 ELRKATLNIF 854
+R+ L F
Sbjct: 1018 NVRRVALVTF 1027
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 32.7 bits (73), Expect = 0.17
Identities = 15/167 (8%), Positives = 39/167 (23%), Gaps = 21/167 (12%)
Query: 920 SSVTRLLERLLDYRSVIQGDENRDKRMSCTVNLLNFYKNEINRKEMYLRYIYKLHDLHRP 979
S++ R L + L + + T + +E +
Sbjct: 15 STIGRRLAKALGVGLL----DTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALAD 70
Query: 980 ADNFTEAGFTLKLYADSLSWTSSAPLINDPMCQPNGAPEWYRKEQLYYEIISYFDKGKCW 1039
D + + + + +
Sbjct: 71 HDGVLS------------LGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPL 118
Query: 1040 EKGIPLCKELADLYEKRLFDYKKLSNIL-----QTQAQFCDNILNQL 1081
G ++ L KR Y++++ + + +IL++L
Sbjct: 119 LAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRL 165
>d3d19a1 a.29.13.1 (A:11-144) Uncharacterized protein BCE_G9241_1042
{Bacillus cereus [TaxId: 1396]}
Length = 134
Score = 32.1 bits (73), Expect = 0.18
Identities = 17/125 (13%), Positives = 42/125 (33%), Gaps = 13/125 (10%)
Query: 851 LNIFF--DMMECEQRVHGNFKQVESELIDKLDILISDNKGDDEYRQLFNTILLDRVQNED 908
F+ M E + F+ +++LI++ + ++ +LF I +
Sbjct: 16 EIRFWSRIMKEHSFFLRLGFRCEDTQLIEEAN----------QFYRLFEHIEQIAHSYTN 65
Query: 909 PQWKETGSAFISSVTRLLERLLDYRSVIQGDENRDKRMSCTVNLLNFYKNEINRKEMYLR 968
E F + V + + ++ I G K + N + + + +
Sbjct: 66 ETDPEQIKRFNAEVQQAATNIWGFKRKILGLILTCK-LPGQNNFPLLVDHTSREADYFRK 124
Query: 969 YIYKL 973
+ +L
Sbjct: 125 RLIQL 129
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV
{Cow (Bos taurus) [TaxId: 9913]}
Length = 144
Score = 30.1 bits (68), Expect = 1.1
Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 16/113 (14%)
Query: 1027 YEIISYFDKGKCWEKGIPLCKEL----ADLYEKRLFDYKKLSN---ILQTQAQFCDNILN 1079
Y + SY D+ + K L L EK + LS + + +F ++
Sbjct: 8 YALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAE 67
Query: 1080 QLRPEPEYFRV-----GFYGLSFPLFVRNKVFVY----RGLAYERMEAFTQRL 1123
R E+ V F G + L + K +VY E + T+R+
Sbjct: 68 MNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRM 120
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 30.3 bits (67), Expect = 1.1
Identities = 19/170 (11%), Positives = 46/170 (27%), Gaps = 23/170 (13%)
Query: 920 SSVTRLLERLLDYRSVIQGDENRDKRMSCTVNLLNFYKNEINRKEMYLRYIYKLHDLHRP 979
++V R L R L Y + D TV + + + + + +
Sbjct: 16 TTVGRELARALGYE-FVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVATPN-- 72
Query: 980 ADNFTEAGFTLKLYADSLSWTSSAPLINDPMCQPNGAPEWYRKEQLYYEIISYFDKGKCW 1039
+ N + +G + +
Sbjct: 73 -------------RVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQ 119
Query: 1040 ---EKGIPLCKELADLYEKRLFDYKKLSNIL----QTQAQFCDNILNQLR 1082
G P+ +E+ + +R Y+ +++ + Q A ++ +R
Sbjct: 120 RPTLTGRPIAEEMEAVLREREALYQDVAHYVVDATQPPAAIVCELMQTMR 169
>d3dbya2 a.29.13.1 (A:126-260) Uncharacterized protein
BCE_G9241_0798 {Bacillus cereus [TaxId: 1396]}
Length = 135
Score = 29.4 bits (66), Expect = 1.6
Identities = 20/140 (14%), Positives = 40/140 (28%), Gaps = 25/140 (17%)
Query: 851 LNIFF--DMMECEQRVHGNFKQVESELIDKLDILISDNKGDDEYRQLFNTILLDRVQNE- 907
++ + D + G VE L +K +E+ + F L V+
Sbjct: 7 YHLVWLTDAAGHAGSISGGLDLVEKRLKEKS----------EEFTKHFEQFYLKAVEMTG 56
Query: 908 ----DPQWKETGSAFISSVTRLLERLLDYRSVIQGDENRDKRMSCTVNLLN---FYKNEI 960
+ F V+ L+ + E + +S V + +
Sbjct: 57 YLRTELHHFPALKKFTKDVSLELKLFSHFL-----HEVEELELSNEVLSVLSARMADHMA 111
Query: 961 NRKEMYLRYIYKLHDLHRPA 980
+ YL + + L P
Sbjct: 112 REECYYLLKLAQSSGLEMPK 131
>d2ux9a1 d.230.2.1 (A:2-67) Uncharacterized protein TTHA1431 {Thermus
thermophilus [TaxId: 274]}
Length = 66
Score = 27.6 bits (62), Expect = 1.7
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 12/34 (35%)
Query: 1227 LRWFEVVESNVDLENPGLQGTIDANVMGGIAKYQ 1260
L WFEV E + G+ +YQ
Sbjct: 35 LDWFEVKEIRGTIGE------------AGVKEYQ 56
>d2cc6a1 d.230.2.1 (A:2-65) Flavin-binding protein dodecin {Archaeon
Halobacterium salinarum [TaxId: 2242]}
Length = 64
Score = 27.6 bits (62), Expect = 2.0
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 12/34 (35%)
Query: 1227 LRWFEVVESNVDLENPGLQGTIDANVMGGIAKYQ 1260
+ W EVV+ V++ YQ
Sbjct: 33 VVWAEVVDQGVEIGA------------VEERTYQ 54
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 113
Score = 28.2 bits (63), Expect = 2.5
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 1031 SYFDKGKCWEKGIPLCKELADLYEKRLFDYKKLSNILQTQA 1071
Y D E L E + EK KK+ N QA
Sbjct: 73 EYVDPTVTLELLDELTHEFLQILEKTPNRLKKIRNWRANQA 113
>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 208
Score = 29.2 bits (65), Expect = 2.9
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 208 IEVTVQVLDSDGTVLQNCLWGASGSDTSSEYHSMIIYHHNSPCWSEIIRLA 258
+ ++ + DG+ + A S + I Y + E+ LA
Sbjct: 59 LSLSFPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDV-SVDEVKALA 108
>d1n7va_ b.126.1.1 (A:) Adsorption protein p2 {Bacteriophage prd1
[TaxId: 10658]}
Length = 555
Score = 29.3 bits (65), Expect = 4.3
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 17/82 (20%)
Query: 1432 SETYEEAPPLPPRGFTPDKRSSGEPPSLHRRQ-DSISQRDSSYSDNISVYEDCVVPNTSF 1490
+E + PLP PD P +L Q + + + D YS++ SF
Sbjct: 146 AEIFRPVNPLPMSDTAPD------PETLEPGQTEPLIKSDGVYSNS---------GIASF 190
Query: 1491 LFSTGSTSPSSPCPPPLPPKVI 1512
+F T P+ P PPLPP VI
Sbjct: 191 IFDRPVTEPN-PNWPPLPPPVI 211
>d2z5fa_ c.37.1.5 (A:) Thyroid hormone sulfotransferase Sult1b1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 28.6 bits (63), Expect = 5.5
Identities = 27/198 (13%), Positives = 62/198 (31%), Gaps = 10/198 (5%)
Query: 702 GDKKPLKDFLLRAFLVLRDLVKQDVFPPDWLVMRMVTNQVILTALGHLAPPLIYWFLDSR 761
GD + K + + + ++ + + + I+ HL L+
Sbjct: 62 GDIEKCKRGFITEKVPMLEMTLPGLRTSGIEQLEKNPSPRIVKT--HLPTDLLPKSFWEN 119
Query: 762 GAFAYQVWSNYFNLAVSFLTQPSLQLEKFSDVKREKIIEKYGDMRVQMGFQILKVWSSLG 821
+ N +++VS+ + + E+ +EK+ +V G V +
Sbjct: 120 NCKMIYLARNAKDVSVSYYHFDLMNNLQPFPGTWEEYLEKFLTGKVAYGSWFTHVKNWW- 178
Query: 822 EHKINFIPSMVGPFLEVTLVPENELRKATLNIFFD-MMECEQRVHG-----NFKQVESEL 875
K P + + ++ P+ E++K + + E R+ K
Sbjct: 179 -KKKEEHPILFLYYEDMKENPKEEIKKIIRFLEKNLNDEILDRIIHHTSFEVMKDNPLVN 237
Query: 876 IDKLDILISDNKGDDEYR 893
L + D+ R
Sbjct: 238 YTHLPTTVMDHSKSPFMR 255
>d3dbya1 a.29.13.1 (A:5-125) Uncharacterized protein BCE_G9241_0798
{Bacillus cereus [TaxId: 1396]}
Length = 121
Score = 27.4 bits (61), Expect = 6.0
Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 27/134 (20%)
Query: 851 LNIFF--DMMECEQRVHGNFKQVESELIDKLDILISDNKGDDEYRQLFNTILLDRVQNED 908
+ F+ + + Q + E E I K + + F +L
Sbjct: 9 EHQFWLKVLTDHAQFLLDALAPKEKEDIKKA----------TYFVETFTNLLNKVRNVNL 58
Query: 909 PQWKETGSAFISSVTRLLERLLDYRSVIQGDENRDKRMSCTVNLLN---FYKNEINRKEM 965
AF + + + ++ K++ + + F + +N E
Sbjct: 59 -------MAFSKEAEQAAKEIRAFK-----LNIIQKQLEGKITIHFTPTFINHMVNEVEE 106
Query: 966 YLRYIYKLHDLHRP 979
Y+ + L P
Sbjct: 107 YIAVLEFLKKGEVP 120
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter
calcoaceticus [TaxId: 471]}
Length = 309
Score = 28.0 bits (62), Expect = 9.2
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 200 GGKSTGKNIEVTVQVLDSDGTVLQNCLWGASGSDTSSEYHSM 241
G G + + + D+DG L N ++T Y
Sbjct: 124 GSDPNGHTLILHGTIFDADGKPLPNAKVEIWHANTKGFYSHF 165
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,827,909
Number of extensions: 284681
Number of successful extensions: 651
Number of sequences better than 10.0: 1
Number of HSP's gapped: 650
Number of HSP's successfully gapped: 20
Length of query: 1561
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1464
Effective length of database: 1,075,786
Effective search space: 1574950704
Effective search space used: 1574950704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)