BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8417
(326 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5PQL2|RCD1_RAT Cell differentiation protein RCD1 homolog OS=Rattus norvegicus
GN=Rqcd1 PE=1 SV=1
Length = 299
Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/289 (84%), Positives = 258/289 (89%), Gaps = 2/289 (0%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
AL V+REKIYQWI ELS PETRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+N
Sbjct: 13 ALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVN 72
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPF
Sbjct: 73 IYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPF 132
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD
Sbjct: 133 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 192
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQC 277
D+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQC
Sbjct: 193 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 252
Query: 278 LPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLESVSAGVVLGAGNNLAPQ 326
LPDQL+D+TF+ L DD +TK WLAQL+KNL+ V G L PQ
Sbjct: 253 LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ--EGQVTDPRGIPLPPQ 299
>sp|Q9JKY0|RCD1_MOUSE Cell differentiation protein RCD1 homolog OS=Mus musculus GN=Rqcd1
PE=1 SV=1
Length = 299
Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/289 (84%), Positives = 258/289 (89%), Gaps = 2/289 (0%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
AL V+REKIYQWI ELS PETRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+N
Sbjct: 13 ALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVN 72
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPF
Sbjct: 73 IYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPF 132
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD
Sbjct: 133 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 192
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQC 277
D+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQC
Sbjct: 193 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 252
Query: 278 LPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLESVSAGVVLGAGNNLAPQ 326
LPDQL+D+TF+ L DD +TK WLAQL+KNL+ V G L PQ
Sbjct: 253 LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ--EGQVTDPRGIPLPPQ 299
>sp|Q4R347|RCD1_MACFA Cell differentiation protein RCD1 homolog OS=Macaca fascicularis
GN=RQCD1 PE=2 SV=1
Length = 299
Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/289 (84%), Positives = 258/289 (89%), Gaps = 2/289 (0%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
AL V+REKIYQWI ELS PETRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+N
Sbjct: 13 ALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVN 72
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPF
Sbjct: 73 IYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPF 132
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD
Sbjct: 133 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 192
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQC 277
D+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQC
Sbjct: 193 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 252
Query: 278 LPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLESVSAGVVLGAGNNLAPQ 326
LPDQL+D+TF+ L DD +TK WLAQL+KNL+ V G L PQ
Sbjct: 253 LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ--EGQVTDPRGIPLPPQ 299
>sp|A7MB47|RCD1_BOVIN Cell differentiation protein RCD1 homolog OS=Bos taurus GN=RQCD1
PE=2 SV=1
Length = 299
Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/289 (84%), Positives = 258/289 (89%), Gaps = 2/289 (0%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
AL V+REKIYQWI ELS PETRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+N
Sbjct: 13 ALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVN 72
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPF
Sbjct: 73 IYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPF 132
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD
Sbjct: 133 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 192
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQC 277
D+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQC
Sbjct: 193 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 252
Query: 278 LPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLESVSAGVVLGAGNNLAPQ 326
LPDQL+D+TF+ L DD +TK WLAQL+KNL+ V G L PQ
Sbjct: 253 LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ--EGQVTDPRGIPLPPQ 299
>sp|Q5R6Z6|RCD1_PONAB Cell differentiation protein RCD1 homolog OS=Pongo abelii GN=RQCD1
PE=2 SV=2
Length = 299
Score = 495 bits (1274), Expect = e-139, Method: Compositional matrix adjust.
Identities = 245/297 (82%), Positives = 260/297 (87%), Gaps = 8/297 (2%)
Query: 30 PTVLQQQQALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIA 89
PT L Q V+REKIYQWI ELS PETRENALLELSKKRE VPDLAPMLWHSFGTIA
Sbjct: 11 PTTLAQ------VDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIA 64
Query: 90 ALLQEIINIYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLH 149
ALLQEI+NIYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLH
Sbjct: 65 ALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLH 124
Query: 150 TTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATF 209
T SKTRPFEYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATF
Sbjct: 125 TVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATF 184
Query: 210 ILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNAR 269
ILQKILLDD+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN R
Sbjct: 185 ILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR 244
Query: 270 AREALRQCLPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLESVSAGVVLGAGNNLAPQ 326
AREALRQCLPDQL+D+TF+ L DD +TK WLAQL+KNL+ V G L PQ
Sbjct: 245 AREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ--EGQVTDPRGIPLPPQ 299
>sp|Q92600|RCD1_HUMAN Cell differentiation protein RCD1 homolog OS=Homo sapiens GN=RQCD1
PE=1 SV=1
Length = 299
Score = 495 bits (1274), Expect = e-139, Method: Compositional matrix adjust.
Identities = 245/297 (82%), Positives = 260/297 (87%), Gaps = 8/297 (2%)
Query: 30 PTVLQQQQALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIA 89
PT L Q V+REKIYQWI ELS PETRENALLELSKKRE VPDLAPMLWHSFGTIA
Sbjct: 11 PTTLAQ------VDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIA 64
Query: 90 ALLQEIINIYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLH 149
ALLQEI+NIYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLH
Sbjct: 65 ALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLH 124
Query: 150 TTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATF 209
T SKTRPFEYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATF
Sbjct: 125 TVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATF 184
Query: 210 ILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNAR 269
ILQKILLDD+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN R
Sbjct: 185 ILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR 244
Query: 270 AREALRQCLPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLESVSAGVVLGAGNNLAPQ 326
AREALRQCLPDQL+D+TF+ L DD +TK WLAQL+KNL+ V G L PQ
Sbjct: 245 AREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ--EGQVTDPRGIPLPPQ 299
>sp|Q6P819|RCD1_XENTR Cell differentiation protein RCD1 homolog OS=Xenopus tropicalis
GN=rqcd1 PE=2 SV=1
Length = 299
Score = 494 bits (1271), Expect = e-139, Method: Compositional matrix adjust.
Identities = 242/289 (83%), Positives = 258/289 (89%), Gaps = 2/289 (0%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
AL V+REKIYQWI ELS P+TRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+N
Sbjct: 13 ALAQVDREKIYQWINELSSPDTRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVN 72
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPF
Sbjct: 73 IYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPF 132
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD
Sbjct: 133 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 192
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQC 277
D+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQC
Sbjct: 193 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 252
Query: 278 LPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLESVSAGVVLGAGNNLAPQ 326
LPDQL+D+TF+ L DD +TK WLAQL+KNL+ V G L PQ
Sbjct: 253 LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ--EGQVTDPRGIPLPPQ 299
>sp|Q6IP65|RCD1_XENLA Cell differentiation protein RCD1 homolog OS=Xenopus laevis
GN=rqcd1 PE=2 SV=1
Length = 299
Score = 494 bits (1271), Expect = e-139, Method: Compositional matrix adjust.
Identities = 242/289 (83%), Positives = 258/289 (89%), Gaps = 2/289 (0%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
AL V+REKIYQWI ELS P+TRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+N
Sbjct: 13 ALAQVDREKIYQWINELSSPDTRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVN 72
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPF
Sbjct: 73 IYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPF 132
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD
Sbjct: 133 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 192
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQC 277
D+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQC
Sbjct: 193 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 252
Query: 278 LPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLESVSAGVVLGAGNNLAPQ 326
LPDQL+D+TF+ L DD +TK WLAQL+KNL+ V G L PQ
Sbjct: 253 LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ--EGQVTDPRGIPLPPQ 299
>sp|Q6NWL4|RCD1_DANRE Cell differentiation protein RCD1 homolog OS=Danio rerio GN=rqcd1
PE=2 SV=1
Length = 298
Score = 488 bits (1255), Expect = e-137, Method: Compositional matrix adjust.
Identities = 235/272 (86%), Positives = 251/272 (92%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
L V+REKIYQWI ELS PETRENALLELSKKRE V DLAPMLWHS GTIAALLQEI+N
Sbjct: 12 GLAQVDREKIYQWINELSSPETRENALLELSKKRESVTDLAPMLWHSCGTIAALLQEIVN 71
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPF
Sbjct: 72 IYPSINPPTLTAHQSNRVCNALALLQCVASHVETRSAFLAAHIPLFLYPFLHTVSKTRPF 131
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD
Sbjct: 132 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 191
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQC 277
D+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN+RAREALRQC
Sbjct: 192 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNSRAREALRQC 251
Query: 278 LPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLE 309
LPDQL+D+TF+ L DD +TK WLAQL+KNL+
Sbjct: 252 LPDQLKDTTFAQVLKDDSTTKRWLAQLVKNLQ 283
>sp|Q92368|RCD1_SCHPO Cell differentiation protein rcd1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rcd1 PE=3 SV=1
Length = 283
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/266 (68%), Positives = 212/266 (79%)
Query: 47 IYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPAT 106
+Y+WI++L +RE AL+ELS+KRE DLA +LWHS+G + ALLQEII++YP +NP T
Sbjct: 14 VYEWIIQLVSGTSREQALVELSRKREQYEDLALILWHSYGVMTALLQEIISVYPLLNPPT 73
Query: 107 LTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLG 166
LT SNRVCNALALLQC+ASH ETR FL AHI LFLYPFL+T SK++PFEYLRLTSLG
Sbjct: 74 LTGPTSNRVCNALALLQCIASHPETRIHFLNAHITLFLYPFLNTLSKSKPFEYLRLTSLG 133
Query: 167 VIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLSYICQ 226
VIGALVK D EVI FLL+TEIIPLCLRIME+GSELSKTVA FI+QK L DD GL YICQ
Sbjct: 134 VIGALVKNDSPEVINFLLSTEIIPLCLRIMENGSELSKTVAIFIVQKFLCDDVGLQYICQ 193
Query: 227 TYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQLRDST 286
TY+RF VA +L MV+ L + RLLKHV+RCYLRLSDN RAREALR CLP+ LRD+T
Sbjct: 194 TYERFYAVASVLNNMVMQLVDSFAFRLLKHVIRCYLRLSDNPRAREALRHCLPEPLRDAT 253
Query: 287 FSVCLNDDKSTKNWLAQLIKNLESVS 312
F+ L DD +TK LAQL+ NL V+
Sbjct: 254 FAQVLKDDHNTKKCLAQLLINLSDVA 279
>sp|P53829|CAF40_YEAST Protein CAF40 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=CAF40 PE=1 SV=1
Length = 373
Score = 330 bits (847), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 167/286 (58%), Positives = 207/286 (72%), Gaps = 1/286 (0%)
Query: 25 STQQSPTVLQQQQALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHS 84
+T+ +P ++ + A+ ++ +Y WI +L+ +E ALLEL +KRE DLA +LW S
Sbjct: 84 ATRNNPNMVNNRGAVHALDDPNVYHWICQLTYGPQKEQALLELGRKREQFDDLAVVLWSS 143
Query: 85 FGTIAALLQEIINIYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFL 144
FG + +LL EII++YP + P L+ + SNRVCNAL LLQCVASH ET+ LFL AHIPLFL
Sbjct: 144 FGVMTSLLNEIISVYPMLQPQMLSNNLSNRVCNALVLLQCVASHPETKHLFLQAHIPLFL 203
Query: 145 YPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSK 204
+PFL+TTS+ R FEYLRLTSLGVIGALVK D Q+VITFLL T+I+PLCLRIMES SELSK
Sbjct: 204 FPFLNTTSRQRTFEYLRLTSLGVIGALVKNDSQDVITFLLRTDIVPLCLRIMESSSELSK 263
Query: 205 TVATFILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLE-KDQSSRLLKHVVRCYLR 263
TVA FILQKILLDD GL YIC T +RF V +L MV L RLLKH++RCYLR
Sbjct: 264 TVAIFILQKILLDDVGLQYICATLERFYAVTNVLKDMVEHLTVSTPPGRLLKHIIRCYLR 323
Query: 264 LSDNARAREALRQCLPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLE 309
LSD+ AR L+ LP +LRD+TF+ L DD +K LAQL+ L
Sbjct: 324 LSDDLEARRLLKIVLPAKLRDNTFTEVLRDDVGSKRCLAQLLLTLN 369
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,053,514
Number of Sequences: 539616
Number of extensions: 4103305
Number of successful extensions: 9960
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9948
Number of HSP's gapped (non-prelim): 15
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)