Query psy8417
Match_columns 326
No_of_seqs 119 out of 162
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 18:20:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04078 Rcd1: Cell differenti 100.0 6E-125 1E-129 880.6 21.2 262 49-310 1-262 (262)
2 KOG3036|consensus 100.0 1E-123 3E-128 868.3 22.9 273 39-311 20-292 (293)
3 COG5209 RCD1 Uncharacterized p 100.0 3E-104 6E-109 735.1 19.1 265 46-310 48-312 (315)
4 PF10508 Proteasom_PSMB: Prote 95.5 0.35 7.6E-06 49.7 14.2 224 57-314 174-424 (503)
5 cd00020 ARM Armadillo/beta-cat 95.1 0.1 2.2E-06 40.5 7.0 95 114-214 23-118 (120)
6 PF10508 Proteasom_PSMB: Prote 91.8 4.3 9.3E-05 41.9 14.0 227 45-312 3-233 (503)
7 cd00020 ARM Armadillo/beta-cat 89.4 2.3 5.1E-05 32.7 7.6 117 135-265 3-119 (120)
8 KOG2160|consensus 89.4 2.7 5.8E-05 42.3 9.6 144 56-218 96-242 (342)
9 PF05804 KAP: Kinesin-associat 83.6 14 0.00031 40.4 12.1 147 113-276 305-451 (708)
10 PF04826 Arm_2: Armadillo-like 82.1 19 0.00042 34.3 11.1 233 41-307 11-244 (254)
11 PLN03200 cellulose synthase-in 81.5 25 0.00054 43.0 13.8 240 39-310 7-261 (2102)
12 PF03224 V-ATPase_H_N: V-ATPas 76.7 5.8 0.00013 38.0 5.8 148 119-276 31-189 (312)
13 PF05804 KAP: Kinesin-associat 69.1 31 0.00067 37.9 9.7 96 176-280 279-376 (708)
14 PLN03200 cellulose synthase-in 65.3 50 0.0011 40.6 11.0 104 113-222 419-523 (2102)
15 PF03224 V-ATPase_H_N: V-ATPas 54.3 52 0.0011 31.5 7.4 178 121-307 128-311 (312)
16 cd00256 VATPase_H VATPase_H, r 51.6 1.3E+02 0.0029 31.2 10.2 137 130-276 41-183 (429)
17 PF12231 Rif1_N: Rap1-interact 50.1 1E+02 0.0023 30.6 9.0 131 122-268 30-165 (372)
18 cd07920 Pumilio Pumilio-family 49.1 2.1E+02 0.0046 26.8 10.5 37 45-87 58-94 (322)
19 PF12348 CLASP_N: CLASP N term 47.4 2E+02 0.0044 25.5 11.9 184 55-267 19-207 (228)
20 PF14911 MMS22L_C: S-phase gen 42.3 1.6E+02 0.0036 30.1 9.1 180 121-308 148-372 (373)
21 PF01602 Adaptin_N: Adaptin N 38.9 4.1E+02 0.0088 26.5 16.1 234 46-311 80-334 (526)
22 PF13251 DUF4042: Domain of un 37.7 1.4E+02 0.0031 27.3 7.2 106 160-267 2-132 (182)
23 KOG1991|consensus 34.1 8.1E+02 0.018 28.6 13.4 193 49-267 380-600 (1010)
24 PF14225 MOR2-PAG1_C: Cell mor 31.5 1.3E+02 0.0029 28.9 6.2 117 164-280 82-218 (262)
25 cd00256 VATPase_H VATPase_H, r 29.5 6.2E+02 0.013 26.4 11.0 33 117-149 163-195 (429)
26 cd07920 Pumilio Pumilio-family 29.5 1E+02 0.0023 28.8 5.1 27 252-278 147-173 (322)
27 PLN00211 predicted protein; Pr 27.5 43 0.00093 26.0 1.7 20 87-106 31-50 (61)
28 PF14776 UNC-79: Cation-channe 26.5 1.5E+02 0.0033 31.7 6.1 117 94-240 25-143 (525)
29 PF14664 RICTOR_N: Rapamycin-i 26.0 4.9E+02 0.011 26.3 9.4 139 112-276 39-186 (371)
30 cd06224 REM Guanine nucleotide 24.4 1.7E+02 0.0036 23.4 4.8 72 48-130 3-83 (122)
31 PF08045 CDC14: Cell division 24.2 4.7E+02 0.01 25.5 8.6 66 82-149 77-143 (257)
32 PF13646 HEAT_2: HEAT repeats; 22.9 1.9E+02 0.0041 21.3 4.6 35 241-276 4-38 (88)
33 PF06371 Drf_GBD: Diaphanous G 22.7 4.9E+02 0.011 22.3 7.7 71 236-308 114-185 (187)
34 KOG2171|consensus 22.3 1.3E+03 0.029 27.2 15.9 191 45-283 4-209 (1075)
35 PF13513 HEAT_EZ: HEAT-like re 22.2 1.8E+02 0.0038 20.3 4.1 51 160-212 3-53 (55)
36 PF05536 Neurochondrin: Neuroc 20.3 4E+02 0.0088 28.2 7.8 111 112-226 20-138 (543)
37 PF04666 Glyco_transf_54: N-Ac 20.3 46 0.001 32.7 0.9 32 154-185 199-231 (297)
38 PF00618 RasGEF_N: RasGEF N-te 20.2 1.1E+02 0.0023 24.2 2.9 71 47-129 7-88 (104)
No 1
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=100.00 E-value=6.2e-125 Score=880.58 Aligned_cols=262 Identities=80% Similarity=1.192 Sum_probs=244.2
Q ss_pred HHHHHhCCcchHHHHHHHHHhhcccCCChhhHhhhhhhhHHHHHHHHHhhcCCCCCCCCChhhhhhHHHHHHHHHHhhhc
Q psy8417 49 QWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATLTAHQSNRVCNALALLQCVASH 128 (326)
Q Consensus 49 q~I~~L~~p~~Re~AL~eLsk~re~~~dLa~~LW~S~Gtia~LLQEIisiYp~L~pp~Lt~~~SnRVCnaLaLLQcvAsh 128 (326)
|||.||++|++||+||+||||+||++|||||+||||||||++|||||+|+||+++||+||+++|||||||||||||||||
T Consensus 1 q~i~~L~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh 80 (262)
T PF04078_consen 1 QLILDLCNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH 80 (262)
T ss_dssp HHHHHTSSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-
T ss_pred ChhHHhcCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccchHHHHHHHHhhchhhhhhhhhccccchhhHHHH
Q psy8417 129 QETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVAT 208 (326)
Q Consensus 129 petR~~FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~TEIiPLCLriME~GsElSKtvAt 208 (326)
||||++||+||||+||||||||++|+|||||||||||||||||||+||+|||+||++|||||+|||+||+|||+||||||
T Consensus 81 petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAt 160 (262)
T PF04078_consen 81 PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVAT 160 (262)
T ss_dssp TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHH
T ss_pred hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccchhhhcchhhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCHHHHHHHHhhCCcccccchhh
Q psy8417 209 FILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQLRDSTFS 288 (326)
Q Consensus 209 fIlqKIL~dd~GL~YiC~T~eRF~aV~~vL~~mV~~l~~~ps~RLLKhIIrCYlRLsdn~rar~aL~~~LP~~Lrd~tf~ 288 (326)
||+||||+||+||+|+|+|+|||+||++||++||.+|+++||+||||||||||+|||||||||+||++|||++|||++|+
T Consensus 161 fIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~LP~~Lrd~~f~ 240 (262)
T PF04078_consen 161 FILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQCLPDQLRDGTFS 240 (262)
T ss_dssp HHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHHHS-GGGTSSTTT
T ss_pred HHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHHhCcHHHhcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCHHHHHHHHHHHHHhcc
Q psy8417 289 VCLNDDKSTKNWLAQLIKNLES 310 (326)
Q Consensus 289 ~~l~~D~~~k~wl~qLl~nl~~ 310 (326)
+++++|+++|+|++||+.|+++
T Consensus 241 ~~l~~D~~~k~~l~qLl~nl~~ 262 (262)
T PF04078_consen 241 NILKDDPSTKRWLQQLLSNLND 262 (262)
T ss_dssp TGGCS-HHHHHHHHHHHHHTT-
T ss_pred HHHhcCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999973
No 2
>KOG3036|consensus
Probab=100.00 E-value=1.4e-123 Score=868.29 Aligned_cols=273 Identities=75% Similarity=1.135 Sum_probs=269.8
Q ss_pred cchhhHHHHHHHHHHhCCcchHHHHHHHHHhhcccCCChhhHhhhhhhhHHHHHHHHHhhcCCCCCCCCChhhhhhHHHH
Q psy8417 39 LLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATLTAHQSNRVCNA 118 (326)
Q Consensus 39 ~~~~d~~~v~q~I~~L~~p~~Re~AL~eLsk~re~~~dLa~~LW~S~Gtia~LLQEIisiYp~L~pp~Lt~~~SnRVCna 118 (326)
+.+.+.|+++|||.++.+|++||+||+|||||||.+||||+++||||||+++|||||+++||.|+||++++++|||||||
T Consensus 20 ~~~~~~dk~~~~i~~l~~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcna 99 (293)
T KOG3036|consen 20 SNASNNDKAYQLILSLVSPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNA 99 (293)
T ss_pred cccccccchhhHHHHhhCCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHH
Confidence 55788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhchhhHHHHHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccchHHHHHHHHhhchhhhhhhhhcc
Q psy8417 119 LALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMES 198 (326)
Q Consensus 119 LaLLQcvAshpetR~~FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~TEIiPLCLriME~ 198 (326)
|+||||||||||||+.||+||||+||||||||++|+|||||||||||||||||||+||+|||+||++|||||+||||||+
T Consensus 100 L~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~ 179 (293)
T KOG3036|consen 100 LALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMES 179 (293)
T ss_pred HHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHhcccccchhhhcchhhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCHHHHHHHHhhC
Q psy8417 199 GSELSKTVATFILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCL 278 (326)
Q Consensus 199 GsElSKtvAtfIlqKIL~dd~GL~YiC~T~eRF~aV~~vL~~mV~~l~~~ps~RLLKhIIrCYlRLsdn~rar~aL~~~L 278 (326)
|||+||||||||+||||+||+||+|+|||+|||+||+.+||+||.++++.||+|||||+||||+|||||||||++|++||
T Consensus 180 GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~cl 259 (293)
T KOG3036|consen 180 GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCL 259 (293)
T ss_pred ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccchhhhhhcCCHHHHHHHHHHHHHhccc
Q psy8417 279 PDQLRDSTFSVCLNDDKSTKNWLAQLIKNLESV 311 (326)
Q Consensus 279 P~~Lrd~tf~~~l~~D~~~k~wl~qLl~nl~~~ 311 (326)
||.|||+||+.++++|+++|+||+||+.|++.+
T Consensus 260 Pd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~~ 292 (293)
T KOG3036|consen 260 PDQLRDGTFSLLLKDDPETKQWLQQLLKNLCTG 292 (293)
T ss_pred cchhccchHHHHHhcChhHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999864
No 3
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=100.00 E-value=2.6e-104 Score=735.11 Aligned_cols=265 Identities=62% Similarity=0.962 Sum_probs=262.5
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHhhcccCCChhhHhhhhhhhHHHHHHHHHhhcCCCCCCCCChhhhhhHHHHHHHHHHh
Q psy8417 46 KIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATLTAHQSNRVCNALALLQCV 125 (326)
Q Consensus 46 ~v~q~I~~L~~p~~Re~AL~eLsk~re~~~dLa~~LW~S~Gtia~LLQEIisiYp~L~pp~Lt~~~SnRVCnaLaLLQcv 125 (326)
.+|.||+.+.....||.||.||++|||++||||..||+|+|+|++|||||||+||.|+|+.|+.+.||||||||+||||+
T Consensus 48 lvy~wicqlv~g~~kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQcl 127 (315)
T COG5209 48 LVYSWICQLVVGNPKEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCL 127 (315)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhHHHHHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccchHHHHHHHHhhchhhhhhhhhccccchhhH
Q psy8417 126 ASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKT 205 (326)
Q Consensus 126 AshpetR~~FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~TEIiPLCLriME~GsElSKt 205 (326)
|||||||+.|++||||+||||||||++++++|||||||||||||||||+|+++||+||+.||||||||||||.|||+|||
T Consensus 128 aShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSkt 207 (315)
T COG5209 128 ASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKT 207 (315)
T ss_pred hcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccchhhhcchhhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCHHHHHHHHhhCCcccccc
Q psy8417 206 VATFILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQLRDS 285 (326)
Q Consensus 206 vAtfIlqKIL~dd~GL~YiC~T~eRF~aV~~vL~~mV~~l~~~ps~RLLKhIIrCYlRLsdn~rar~aL~~~LP~~Lrd~ 285 (326)
||.||+||||.||+||+|+|||+|||+||+.||++||.|++..++.|||||+||||+||||||+||++|+.|+|+.|||+
T Consensus 208 vaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL~~~lP~~Lrd~ 287 (315)
T COG5209 208 VAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALLSSKLPDGLRDD 287 (315)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHHhccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHhcc
Q psy8417 286 TFSVCLNDDKSTKNWLAQLIKNLES 310 (326)
Q Consensus 286 tf~~~l~~D~~~k~wl~qLl~nl~~ 310 (326)
||+..++||-..|+|+.||+.+++.
T Consensus 288 tfs~vl~dD~~sk~ClAqll~~ln~ 312 (315)
T COG5209 288 TFSLVLADDGGSKECLAQLLTFLNL 312 (315)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHh
Confidence 9999999999999999999998864
No 4
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.49 E-value=0.35 Score=49.70 Aligned_cols=224 Identities=21% Similarity=0.197 Sum_probs=146.6
Q ss_pred cchHHHHHHHHHhhcccCCChhhHhhhhhhhHHHHHHHHHhhcCCCCCCCCChhhhhhHHHHHHHHHHhhhchhhHHHHH
Q psy8417 57 PETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFL 136 (326)
Q Consensus 57 p~~Re~AL~eLsk~re~~~dLa~~LW~S~Gtia~LLQEIisiYp~L~pp~Lt~~~SnRVCnaLaLLQcvAshpetR~~FL 136 (326)
..-|-.++.-+.+.-...++.+...|.| |.+..++.|+-+ ...----|++.+|.-+|.++.......
T Consensus 174 ~~vR~Rv~el~v~i~~~S~~~~~~~~~s-gll~~ll~eL~~------------dDiLvqlnalell~~La~~~~g~~yL~ 240 (503)
T PF10508_consen 174 DIVRCRVYELLVEIASHSPEAAEAVVNS-GLLDLLLKELDS------------DDILVQLNALELLSELAETPHGLQYLE 240 (503)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhc-cHHHHHHHHhcC------------ccHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 3356665555555555667888888875 777777776543 111112499999999999999999999
Q ss_pred hhcccccccccccccCCCCCccchhhhhhhhh------hhhhccchHHHHHHHHhhchhhhhhhhhccccchhhHHHHHH
Q psy8417 137 AAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVI------GALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFI 210 (326)
Q Consensus 137 ~A~iplyLyPfLnttsk~r~fE~LRLtSLGVI------gaLvK~dd~evI~fLL~TEIiPLCLriME~GsElSKtvAtfI 210 (326)
+..+.--|+..+... ++.| |+.++-+- |.+...+.++++.-. ..++....+.++.++.-.+-+|.-.
T Consensus 241 ~~gi~~~L~~~l~~~-~~dp----~~~~~~l~g~~~f~g~la~~~~~~v~~~~--p~~~~~l~~~~~s~d~~~~~~A~dt 313 (503)
T PF10508_consen 241 QQGIFDKLSNLLQDS-EEDP----RLSSLLLPGRMKFFGNLARVSPQEVLELY--PAFLERLFSMLESQDPTIREVAFDT 313 (503)
T ss_pred hCCHHHHHHHHHhcc-ccCC----cccchhhhhHHHHHHHHHhcChHHHHHHH--HHHHHHHHHHhCCCChhHHHHHHHH
Confidence 998988888888765 3334 44444444 445555555555321 2344444567788888888888889
Q ss_pred HHHHhcccccchhh-hcchhhhHHHHHH-------------------HHHHHHHHhhcCCchhHHHHHHHHHHhhcCHHH
Q psy8417 211 LQKILLDDSGLSYI-CQTYDRFSHVAMI-------------------LGKMVISLEKDQSSRLLKHVVRCYLRLSDNARA 270 (326)
Q Consensus 211 lqKIL~dd~GL~Yi-C~T~eRF~aV~~v-------------------L~~mV~~l~~~ps~RLLKhIIrCYlRLsdn~ra 270 (326)
+--|=+..+|..-. .++.++|.++-.- |++++..-...++.+++.-.-..|..++++|.-
T Consensus 314 lg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~ 393 (503)
T PF10508_consen 314 LGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLS 393 (503)
T ss_pred HHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchH
Confidence 99999999998888 6666666555332 233322222335556666666667777666643
Q ss_pred HHHHHhhCCcccccchhhhhhcCC-HHHHHHHHHHHHHhcccCcc
Q psy8417 271 REALRQCLPDQLRDSTFSVCLNDD-KSTKNWLAQLIKNLESVSAG 314 (326)
Q Consensus 271 r~aL~~~LP~~Lrd~tf~~~l~~D-~~~k~wl~qLl~nl~~~~~~ 314 (326)
. .|.++++.+ |+.|---..+|..+..-+||
T Consensus 394 ~--------------~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg 424 (503)
T PF10508_consen 394 N--------------LLMSLLKQPFPELRCAAYRLLQALAAQPWG 424 (503)
T ss_pred H--------------HHHHHhcCCchHHHHHHHHHHHHHhcCHHH
Confidence 3 455556666 77777777777777666665
No 5
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.09 E-value=0.1 Score=40.46 Aligned_cols=95 Identities=16% Similarity=0.087 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHhhhc-hhhHHHHHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccchHHHHHHHHhhchhhhh
Q psy8417 114 RVCNALALLQCVASH-QETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLC 192 (326)
Q Consensus 114 RVCnaLaLLQcvAsh-petR~~FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~TEIiPLC 192 (326)
-..+++..|-.++++ |+.+..|++.++.-.|.++|+.. ...+|-.+++.++.+.... ++....+....++|..
T Consensus 23 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-----~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~~l 96 (120)
T cd00020 23 VQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-----DEEVVKAALWALRNLAAGP-EDNKLIVLEAGGVPKL 96 (120)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-----CHHHHHHHHHHHHHHccCc-HHHHHHHHHCCChHHH
Confidence 445777888889988 89999999989888888898863 4688999999999999854 4677778888999999
Q ss_pred hhhhccccchhhHHHHHHHHHH
Q psy8417 193 LRIMESGSELSKTVATFILQKI 214 (326)
Q Consensus 193 LriME~GsElSKtvAtfIlqKI 214 (326)
++.+..++.-.+..|.+++..+
T Consensus 97 ~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 97 VNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh
Confidence 9999998877777777776544
No 6
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=91.83 E-value=4.3 Score=41.86 Aligned_cols=227 Identities=22% Similarity=0.280 Sum_probs=135.7
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHhhcccCC---ChhhHhhhhhhhHHHHHHHHHhhcCCCCCCCCChhhhhhHHHHHHH
Q psy8417 45 EKIYQWILELSIPETRENALLELSKKREVVP---DLAPMLWHSFGTIAALLQEIINIYPTINPATLTAHQSNRVCNALAL 121 (326)
Q Consensus 45 ~~v~q~I~~L~~p~~Re~AL~eLsk~re~~~---dLa~~LW~S~Gtia~LLQEIisiYp~L~pp~Lt~~~SnRVCnaLaL 121 (326)
+.+..++.+|...+.|-++|.+|--.-...+ ++...+ +|-.++.. +.++.+=+|.+|..
T Consensus 3 ~~~~~~l~~l~~~~~~~~~L~~l~~~~~~~~~l~~~~~~~----------------lf~~L~~~--~~e~v~~~~~iL~~ 64 (503)
T PF10508_consen 3 EWINELLEELSSKAERLEALPELKTELSSSPFLERLPEPV----------------LFDCLNTS--NREQVELICDILKR 64 (503)
T ss_pred hHHHHHHHHHhcccchHHHHHHHHHHHhhhhHHHhchHHH----------------HHHHHhhc--ChHHHHHHHHHHHH
Confidence 3456778888888999888888765444444 221111 34444432 45566666766543
Q ss_pred HHHhhhchhhHHHHHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccchHHHHHHHHhhchhhhhhhhhccccc
Q psy8417 122 LQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSE 201 (326)
Q Consensus 122 LQcvAshpetR~~FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~TEIiPLCLriME~GsE 201 (326)
+=. +..|+. +..++.-||--.|+ .|...+|--.+..||-++..+ ...+..+.+.+++|+.+..+....+
T Consensus 65 ~l~-~~~~~~----l~~~~~~~L~~gL~-----h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~d~ 133 (503)
T PF10508_consen 65 LLS-ALSPDS----LLPQYQPFLQRGLT-----HPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDPDL 133 (503)
T ss_pred HHh-ccCHHH----HHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCCcH
Confidence 222 122221 12333333333333 366788988888899888755 4578899999999999999998888
Q ss_pred hhhHHHHHHHHHHhcccccchhhhcchhhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhh-cCHHHHHHHHhhCCc
Q psy8417 202 LSKTVATFILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLS-DNARAREALRQCLPD 280 (326)
Q Consensus 202 lSKtvAtfIlqKIL~dd~GL~YiC~T~eRF~aV~~vL~~mV~~l~~~ps~RLLKhIIrCYlRLs-dn~rar~aL~~~LP~ 280 (326)
-....|.-++.+|.....|++-+-... .+..+. ++..+++.-+--.+..+...++ .++.+.+... ..
T Consensus 134 ~Va~~A~~~L~~l~~~~~~~~~l~~~~--------~~~~L~-~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~---~s 201 (503)
T PF10508_consen 134 SVAKAAIKALKKLASHPEGLEQLFDSN--------LLSKLK-SLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV---NS 201 (503)
T ss_pred HHHHHHHHHHHHHhCCchhHHHHhCcc--------hHHHHH-HHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH---hc
Confidence 888889999999999888776332111 012222 2223334322234555555554 3444444443 34
Q ss_pred ccccchhhhhhcCCHHHHHHHHHHHHHhcccC
Q psy8417 281 QLRDSTFSVCLNDDKSTKNWLAQLIKNLESVS 312 (326)
Q Consensus 281 ~Lrd~tf~~~l~~D~~~k~wl~qLl~nl~~~~ 312 (326)
.+.+..+..+-.+|.-++.-..+++..+...+
T Consensus 202 gll~~ll~eL~~dDiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 202 GLLDLLLKELDSDDILVQLNALELLSELAETP 233 (503)
T ss_pred cHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh
Confidence 45555555555667777777777777775533
No 7
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.45 E-value=2.3 Score=32.75 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=73.0
Q ss_pred HHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccchHHHHHHHHhhchhhhhhhhhccccchhhHHHHHHHHHH
Q psy8417 135 FLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 214 (326)
Q Consensus 135 FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~TEIiPLCLriME~GsElSKtvAtfIlqKI 214 (326)
|++.++--+|-.+|+..+ .++|..++..++.+.+.+ ++....+.+.+++|.++..|...+.--+-.|...+..|
T Consensus 3 ~~~~~~i~~l~~~l~~~~-----~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l 76 (120)
T cd00020 3 VIQAGGLPALVSLLSSSD-----ENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNL 76 (120)
T ss_pred HHHcCChHHHHHHHHcCC-----HHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 344444445555555333 578999999999988864 56666777889999999999987766666777887777
Q ss_pred hcccccchhhhcchhhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhh
Q psy8417 215 LLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLS 265 (326)
Q Consensus 215 L~dd~GL~YiC~T~eRF~aV~~vL~~mV~~l~~~ps~RLLKhIIrCYlRLs 265 (326)
..+...-.- .+ .-..++..++..+ .+++.+.-+++..+-..|+
T Consensus 77 ~~~~~~~~~------~~-~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 77 AAGPEDNKL------IV-LEAGGVPKLVNLL-DSSNEDIQKNATGALSNLA 119 (120)
T ss_pred ccCcHHHHH------HH-HHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhh
Confidence 655431111 11 0011333333333 3446677777666665554
No 8
>KOG2160|consensus
Probab=89.36 E-value=2.7 Score=42.28 Aligned_cols=144 Identities=22% Similarity=0.182 Sum_probs=108.2
Q ss_pred CcchHHHHHHHHHhhcccCCChhhHhhhhhhhHHHHHHHHHhhcCCCCCCCCChhhhhhHHHHHHHHHHhhhchhhHHHH
Q psy8417 56 IPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLF 135 (326)
Q Consensus 56 ~p~~Re~AL~eLsk~re~~~dLa~~LW~S~Gtia~LLQEIisiYp~L~pp~Lt~~~SnRVCnaLaLLQcvAshpetR~~F 135 (326)
+++.||.|+-+|-..-|++. .|..|=..-|....+. +++. .+..-|...+=.+=-|+-.+|.....+
T Consensus 96 ~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~--------~l~~----~~~~lR~~Aa~Vigt~~qNNP~~Qe~v 162 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLG--------YLEN----SDAELRELAARVIGTAVQNNPKSQEQV 162 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHH--------HhcC----CcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 56789999999998888774 4666655555554443 2332 233446666666777899999999999
Q ss_pred HhhcccccccccccccCCCCCccchhhhhhhhhhhhhccchHHHHHHHHhhchhhhhh-hhhcc--ccchhhHHHHHHHH
Q psy8417 136 LAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCL-RIMES--GSELSKTVATFILQ 212 (326)
Q Consensus 136 L~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~TEIiPLCL-riME~--GsElSKtvAtfIlq 212 (326)
+..+ +|-..+..-+++ .-.+.|--.|+-|++|++...+-.-.|+.-.-. -|| +.|+. -+-..|.+|.|.++
T Consensus 163 ~E~~---~L~~Ll~~ls~~-~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~--~~L~~vl~~~~~~~~lkrK~~~Ll~ 236 (342)
T KOG2160|consen 163 IELG---ALSKLLKILSSD-DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGY--QVLRDVLQSNNTSVKLKRKALFLLS 236 (342)
T ss_pred HHcc---cHHHHHHHHccC-CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCH--HHHHHHHHcCCcchHHHHHHHHHHH
Confidence 9999 666666666633 456778899999999999988888888877663 355 57999 67889999999999
Q ss_pred HHhccc
Q psy8417 213 KILLDD 218 (326)
Q Consensus 213 KIL~dd 218 (326)
+++..+
T Consensus 237 ~Ll~~~ 242 (342)
T KOG2160|consen 237 LLLQED 242 (342)
T ss_pred HHHHhh
Confidence 999665
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=83.61 E-value=14 Score=40.41 Aligned_cols=147 Identities=17% Similarity=0.209 Sum_probs=116.4
Q ss_pred hhHHHHHHHHHHhhhchhhHHHHHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccchHHHHHHHHhhchhhhh
Q psy8417 113 NRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLC 192 (326)
Q Consensus 113 nRVCnaLaLLQcvAshpetR~~FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~TEIiPLC 192 (326)
.=.++++++|+-+.-++|-|......++.--|-.++... .+.++-.+|+.+.-|-- |+++-..+.+..+||-.
T Consensus 305 ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~-----~~~l~~~aLrlL~NLSf--d~~~R~~mV~~GlIPkL 377 (708)
T PF05804_consen 305 ELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE-----NEDLVNVALRLLFNLSF--DPELRSQMVSLGLIPKL 377 (708)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC-----CHHHHHHHHHHHHHhCc--CHHHHHHHHHCCCcHHH
Confidence 456788899999999999999999999888888888643 34577788888877765 67788899999999999
Q ss_pred hhhhccccchhhHHHHHHHHHHhcccccchhhhcchhhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCHHHHH
Q psy8417 193 LRIMESGSELSKTVATFILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARARE 272 (326)
Q Consensus 193 LriME~GsElSKtvAtfIlqKIL~dd~GL~YiC~T~eRF~aV~~vL~~mV~~l~~~ps~RLLKhIIrCYlRLsdn~rar~ 272 (326)
...++.++ .+-+|..|++-+=.||.+-.-+..|- ++..++..+...|++++=...+.--.-||-|+|.-+
T Consensus 378 v~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~Td--------cIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaq 447 (708)
T PF05804_consen 378 VELLKDPN--FREVALKILYNLSMDDEARSMFAYTD--------CIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQ 447 (708)
T ss_pred HHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcc--------hHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHH
Confidence 88887654 56789999999999999887776663 445566666677888876667777778899998877
Q ss_pred HHHh
Q psy8417 273 ALRQ 276 (326)
Q Consensus 273 aL~~ 276 (326)
.+.+
T Consensus 448 lm~~ 451 (708)
T PF05804_consen 448 LMCE 451 (708)
T ss_pred HHHh
Confidence 7664
No 10
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=82.13 E-value=19 Score=34.33 Aligned_cols=233 Identities=17% Similarity=0.238 Sum_probs=143.5
Q ss_pred hhhHHHHHHHHHHhCCcchHHHHHHHHHhhcccCCChhhHhhhhhhhHHHHHHHHHhhcCCCCCCCCChhhhhhHHHHHH
Q psy8417 41 PVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATLTAHQSNRVCNALA 120 (326)
Q Consensus 41 ~~d~~~v~q~I~~L~~p~~Re~AL~eLsk~re~~~dLa~~LW~S~Gtia~LLQEIisiYp~L~pp~Lt~~~SnRVCnaLa 120 (326)
..+-+++..++..-.+|..+|.|+.-|++... || ....+|.-+|.+..+..=+ +.|.- .-| -.||.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~-~nq~~Ir~~Ggi~lI~~lL-------~~p~~----~vr-~~AL~ 76 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAA-FP-FNQDIIRDLGGISLIGSLL-------NDPNP----SVR-EKALN 76 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-Ch-hHHHHHHHcCCHHHHHHHc-------CCCCh----HHH-HHHHH
Confidence 34456667766666689999999999998543 44 6888999999988765432 22211 112 24454
Q ss_pred HHHHhhhchhhHHHHHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccch-HHHHHHHHhhchhhhhhhhhccc
Q psy8417 121 LLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDE-QEVITFLLTTEIIPLCLRIMESG 199 (326)
Q Consensus 121 LLQcvAshpetR~~FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd-~evI~fLL~TEIiPLCLriME~G 199 (326)
.+--++.+.|-+.. ++. |+---+..+.-...-..+.++.|+.++-|--+++ .+.+ ...+|-+++.+..|
T Consensus 77 aL~Nls~~~en~~~-Ik~----~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l-----~~~i~~ll~LL~~G 146 (254)
T PF04826_consen 77 ALNNLSVNDENQEQ-IKM----YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML-----ANYIPDLLSLLSSG 146 (254)
T ss_pred HHHhcCCChhhHHH-HHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH-----HhhHHHHHHHHHcC
Confidence 45556666655543 343 3333333322222234556789988888855444 3332 23688889999999
Q ss_pred cchhhHHHHHHHHHHhcccccchhhhcchhhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCHHHHHHHHhhCC
Q psy8417 200 SELSKTVATFILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLP 279 (326)
Q Consensus 200 sElSKtvAtfIlqKIL~dd~GL~YiC~T~eRF~aV~~vL~~mV~~l~~~ps~RLLKhIIrCYlRLsdn~rar~aL~~~LP 279 (326)
++-.|.-+.-++--+=.+..=..+... +.++...+.=+..+-+.-+|-+++..+.+++++-+-...+.-.
T Consensus 147 ~~~~k~~vLk~L~nLS~np~~~~~Ll~--------~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~-- 216 (254)
T PF04826_consen 147 SEKTKVQVLKVLVNLSENPDMTRELLS--------AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQ-- 216 (254)
T ss_pred ChHHHHHHHHHHHHhccCHHHHHHHHh--------ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceecc--
Confidence 999887777665433222221111111 2455565544556667888999999999999887665444421
Q ss_pred cccccchhhhhhcCCHHHHHHHHHHHHH
Q psy8417 280 DQLRDSTFSVCLNDDKSTKNWLAQLIKN 307 (326)
Q Consensus 280 ~~Lrd~tf~~~l~~D~~~k~wl~qLl~n 307 (326)
+.+..+....++.+...+.+.|..|..+
T Consensus 217 ~~~~~~~L~~~~~e~~~~~~~l~~l~~h 244 (254)
T PF04826_consen 217 DDFSEDSLFSLFGESSQLAKKLQALANH 244 (254)
T ss_pred ccCCchhHHHHHccHHHHHHHHHHHHcC
Confidence 3344444447788887777777777654
No 11
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=81.48 E-value=25 Score=42.98 Aligned_cols=240 Identities=17% Similarity=0.104 Sum_probs=140.1
Q ss_pred cchhhHHHHHHHHHHhCCc----chHHHHHH---HHHhhcccCCChhhHhhhhhhhHHHHHHHHHhhcCCCCCCCCChhh
Q psy8417 39 LLPVEREKIYQWILELSIP----ETRENALL---ELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATLTAHQ 111 (326)
Q Consensus 39 ~~~~d~~~v~q~I~~L~~p----~~Re~AL~---eLsk~re~~~dLa~~LW~S~Gtia~LLQEIisiYp~L~pp~Lt~~~ 111 (326)
+.......+..||.+|.+. +.|+.|+. +|+|..+. ---.+=..-|.+..|+.=+.+ ++ .
T Consensus 7 ~~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~e---nR~~Ia~~aGaIP~LV~lL~s-------g~----~ 72 (2102)
T PLN03200 7 DPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREE---ARKAIGSHSQAMPLLVSLLRS-------GT----L 72 (2102)
T ss_pred CccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChH---HHHHHHHccCcHHHHHHHHcC-------CC----H
Confidence 3455577889999999966 77876554 45555542 233344446777777665532 11 1
Q ss_pred hhhHHHHHHHHHHhhhchhhHHHHHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccc--hHHHHHHHHhhchh
Q psy8417 112 SNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTD--EQEVITFLLTTEII 189 (326)
Q Consensus 112 SnRVCnaLaLLQcvAshpetR~~FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~d--d~evI~fLL~TEIi 189 (326)
.-+ -|+.+.|-.++.|++-|...+.+..--.|-=.|+..+ ..-|-.+.+++..|...+ |..=..-......|
T Consensus 73 ~vk-~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs-----~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaV 146 (2102)
T PLN03200 73 GAK-VNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGS-----AEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVV 146 (2102)
T ss_pred HHH-HHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCCC-----HHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCCh
Confidence 112 2777889999999999988887543333433454332 336888889999988765 32112233467899
Q ss_pred hhhhhhhccccchhhH---HHHHHHHHHhcccccchhhhcchhhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhc
Q psy8417 190 PLCLRIMESGSELSKT---VATFILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSD 266 (326)
Q Consensus 190 PLCLriME~GsElSKt---vAtfIlqKIL~dd~GL~YiC~T~eRF~aV~~vL~~mV~~l~~~ps~RLLKhIIrCYlRLsd 266 (326)
|..++.++.|+.-.|. .|+-.+..+-.++++..-..- =+..+..+|.-+ +.+++.+-.+...+..+++.
T Consensus 147 p~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~II-------eaGaVp~LV~LL-sS~d~~lQ~eAa~aLa~Las 218 (2102)
T PLN03200 147 PSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATL-------EAGGVDILVKLL-SSGNSDAQANAASLLARLMM 218 (2102)
T ss_pred HHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHH-------HcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHc
Confidence 9999999999754554 344555555444443211100 012333334333 44677888888887666664
Q ss_pred C-HHHHHHHHhhCCcccccchhhhhhcC--CHHHHHHHHHHHHHhcc
Q psy8417 267 N-ARAREALRQCLPDQLRDSTFSVCLND--DKSTKNWLAQLIKNLES 310 (326)
Q Consensus 267 n-~rar~aL~~~LP~~Lrd~tf~~~l~~--D~~~k~wl~qLl~nl~~ 310 (326)
+ ++.++++.+. .. =+.|-.++++ |+.+|+.=.-.|.|+..
T Consensus 219 s~ee~~~aVIea---Ga-VP~LV~LL~sg~~~~VRE~AA~AL~nLAs 261 (2102)
T PLN03200 219 AFESSISKVLDA---GA-VKQLLKLLGQGNEVSVRAEAAGALEALSS 261 (2102)
T ss_pred CChHHHHHHHHC---CC-HHHHHHHHccCCChHHHHHHHHHHHHHhc
Confidence 4 6667666531 00 1234445543 34566655555666653
No 12
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=76.71 E-value=5.8 Score=37.96 Aligned_cols=148 Identities=20% Similarity=0.253 Sum_probs=76.9
Q ss_pred HHHHHHhhhch-hhHHHHHhhcccccccccccccCCC-CCccchhhhhhhhhhhhhccchHHHHHHHHh------hchhh
Q psy8417 119 LALLQCVASHQ-ETRSLFLAAHIPLFLYPFLHTTSKT-RPFEYLRLTSLGVIGALVKTDEQEVITFLLT------TEIIP 190 (326)
Q Consensus 119 LaLLQcvAshp-etR~~FL~A~iplyLyPfLnttsk~-r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~------TEIiP 190 (326)
+.+++.+-+-+ +-|..+++++-+.|---|++.-++. ..-+. .--.|-.|+-++..|. +..+.+.. .+.+.
T Consensus 31 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~-v~yvL~li~dll~~~~-~~~~~~~~~~~~~~~~~~~ 108 (312)
T PF03224_consen 31 LSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDT-VQYVLTLIDDLLSDDP-SRVELFLELAKQDDSDPYS 108 (312)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHH---HHH-HHHHHHHHHHHHH-SS-SSHHHHHHHHH-TTH--HH
T ss_pred HHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHH-HHHHHHHHHHHHhcCH-HHHHHHHHhcccccchhHH
Confidence 35566665433 5677888888888877776555444 32233 2345667777777554 44444433 23688
Q ss_pred hhhhhhccccchhhHHHHHHHHHHhcccccchhhhcchhhhHHHHHHHHHHHHHHhh---cCCchhHHHHHHHHHHhhcC
Q psy8417 191 LCLRIMESGSELSKTVATFILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEK---DQSSRLLKHVVRCYLRLSDN 267 (326)
Q Consensus 191 LCLriME~GsElSKtvAtfIlqKIL~dd~GL~YiC~T~eRF~aV~~vL~~mV~~l~~---~ps~RLLKhIIrCYlRLsdn 267 (326)
..++.++.+....+..|.+++-+++..+..-...= +..++...+..+.+ ..+..+....++|+..|..+
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~--------~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL--------VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH--------HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccch--------HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 88999999999999999999999987765443321 13334444433332 34456678999999999999
Q ss_pred HHHHHHHHh
Q psy8417 268 ARAREALRQ 276 (326)
Q Consensus 268 ~rar~aL~~ 276 (326)
++.|..+-+
T Consensus 181 ~~~R~~f~~ 189 (312)
T PF03224_consen 181 KEYRQVFWK 189 (312)
T ss_dssp HHHHHHHHT
T ss_pred chhHHHHHh
Confidence 999998865
No 13
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=69.10 E-value=31 Score=37.89 Aligned_cols=96 Identities=17% Similarity=0.263 Sum_probs=70.2
Q ss_pred hHHHHHHHHhhchhhhhhhhhccccchhhHHHHHHHHHHhcccccchhhhcchhhhHHHHHHHHHHHHHHhhcCCchhHH
Q psy8417 176 EQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLK 255 (326)
Q Consensus 176 d~evI~fLL~TEIiPLCLriME~GsElSKtvAtfIlqKIL~dd~GL~YiC~T~eRF~aV~~vL~~mV~~l~~~ps~RLLK 255 (326)
|..+-.=..+..+|++..+.|+.+++-..+.++-.++|+=..++.-+-+-+. .++.+.+ .+...++..+++
T Consensus 279 d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~--------giV~kL~-kLl~s~~~~l~~ 349 (708)
T PF05804_consen 279 DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAES--------GIVEKLL-KLLPSENEDLVN 349 (708)
T ss_pred ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHc--------CCHHHHH-HHhcCCCHHHHH
Confidence 3444445566789999999999999999999999999986555433322111 1333322 233556789999
Q ss_pred HHHHHHHHhhcCHHHHHHHHh--hCCc
Q psy8417 256 HVVRCYLRLSDNARAREALRQ--CLPD 280 (326)
Q Consensus 256 hIIrCYlRLsdn~rar~aL~~--~LP~ 280 (326)
..+|.-..||-|+..|..+.+ ++|.
T Consensus 350 ~aLrlL~NLSfd~~~R~~mV~~GlIPk 376 (708)
T PF05804_consen 350 VALRLLFNLSFDPELRSQMVSLGLIPK 376 (708)
T ss_pred HHHHHHHHhCcCHHHHHHHHHCCCcHH
Confidence 999999999999999999987 7774
No 14
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=65.32 E-value=50 Score=40.61 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHhhhc-hhhHHHHHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccchHHHHHHHHhhchhhh
Q psy8417 113 NRVCNALALLQCVASH-QETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPL 191 (326)
Q Consensus 113 nRVCnaLaLLQcvAsh-petR~~FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~TEIiPL 191 (326)
..-+++..-|-.++.| ++-+..+.+....-+|-.||...+ +..|-..+.++|.+.+.++ +....+.+...||.
T Consensus 419 evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s-----~~iQ~~A~~~L~nLa~~nd-enr~aIieaGaIP~ 492 (2102)
T PLN03200 419 DVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS-----EQQQEYAVALLAILTDEVD-ESKWAITAAGGIPP 492 (2102)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHH
Confidence 3445555555566644 788888888888888899998643 4567777888999988655 34456778999999
Q ss_pred hhhhhccccchhhHHHHHHHHHHhcccccch
Q psy8417 192 CLRIMESGSELSKTVATFILQKILLDDSGLS 222 (326)
Q Consensus 192 CLriME~GsElSKtvAtfIlqKIL~dd~GL~ 222 (326)
..+.+++|+.-.|--|...+..|-.++....
T Consensus 493 LV~LL~s~~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 493 LVQLLETGSQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 9999999999999998888887765443333
No 15
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=54.33 E-value=52 Score=31.52 Aligned_cols=178 Identities=13% Similarity=0.109 Sum_probs=89.4
Q ss_pred HHHHhhhchhhHHHHHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccchHHHHHHHHhhchhhhhhhhhcccc
Q psy8417 121 LLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGS 200 (326)
Q Consensus 121 LLQcvAshpetR~~FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~TEIiPLCLriME~Gs 200 (326)
+|=.++++...+.......+--+++-+|....++...|+. -..+...+.|++.++ .=..+.+.+.++...+++....
T Consensus 128 iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~-~~av~~L~~LL~~~~--~R~~f~~~~~v~~l~~iL~~~~ 204 (312)
T PF03224_consen 128 ILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQ-YIAVQCLQNLLRSKE--YRQVFWKSNGVSPLFDILRKQA 204 (312)
T ss_dssp HHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH----HHHHHHHHHHHTSHH--HHHHHHTHHHHHHHHHHHH---
T ss_pred HHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchH-HHHHHHHHHHhCcch--hHHHHHhcCcHHHHHHHHHhhc
Confidence 3444555554444433334445566666654333333333 344566688887544 5555666889999999886444
Q ss_pred chhhHHHHHHHHHHhcccccchhhhcchhhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCHH---HHHHHHhh
Q psy8417 201 ELSKTVATFILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNAR---AREALRQC 277 (326)
Q Consensus 201 ElSKtvAtfIlqKIL~dd~GL~YiC~T~eRF~aV~~vL~~mV~~l~~~ps~RLLKhIIrCYlRLsdn~r---ar~aL~~~ 277 (326)
.-+.....-+.+..+.-==-|.|-....+.|..=. +...++.-+...+...+.+-++-+..-|.+.+. +..++-..
T Consensus 205 ~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~-~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~ 283 (312)
T PF03224_consen 205 TNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY-LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCG 283 (312)
T ss_dssp ------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS-HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-
T ss_pred ccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc-hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHcc
Confidence 44556666677776654444455444444442222 333333333444555777777777777777665 44444455
Q ss_pred CCcccc---cchhhhhhcCCHHHHHHHHHHHHH
Q psy8417 278 LPDQLR---DSTFSVCLNDDKSTKNWLAQLIKN 307 (326)
Q Consensus 278 LP~~Lr---d~tf~~~l~~D~~~k~wl~qLl~n 307 (326)
+|..+. ...| .|++...=+++|...
T Consensus 284 ~l~~l~~L~~rk~-----~Dedl~edl~~L~e~ 311 (312)
T PF03224_consen 284 LLKTLQNLSERKW-----SDEDLTEDLEFLKEI 311 (312)
T ss_dssp HHHHHHHHHSS-------SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-----CCHHHHHHHHHHHhh
Confidence 555433 3333 577777777666543
No 16
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=51.63 E-value=1.3e+02 Score=31.21 Aligned_cols=137 Identities=12% Similarity=0.108 Sum_probs=92.3
Q ss_pred hhHHHHHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccchHHHHHHHHhh-----chhhhhhhhhccccchhh
Q psy8417 130 ETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTT-----EIIPLCLRIMESGSELSK 204 (326)
Q Consensus 130 etR~~FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~T-----EIiPLCLriME~GsElSK 204 (326)
+.|...++.+-+.|...|+|..+++..-+.++ -.|-.|.-|+..| +.-+.++... +..-..++.+........
T Consensus 41 ~~~~~~~~~~~~~y~~~~l~ll~~~~~~d~vq-yvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~ 118 (429)
T cd00256 41 RVKEEILDVLSGQYVKTFVNLLSQIDKDDTVR-YVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIV 118 (429)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhccCcHHHHH-HHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCchhHH
Confidence 56778888888999999999877777655554 4577788888864 4444444443 555556667778888888
Q ss_pred HHHHHHHHHHhcccccchhhhcchhhhHHHHHHH-HHHHHHHhhcCCchhHHHHHHHHHHhhcCHHHHHHHHh
Q psy8417 205 TVATFILQKILLDDSGLSYICQTYDRFSHVAMIL-GKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQ 276 (326)
Q Consensus 205 tvAtfIlqKIL~dd~GL~YiC~T~eRF~aV~~vL-~~mV~~l~~~ps~RLLKhIIrCYlRLsdn~rar~aL~~ 276 (326)
-.|.+|+.+++..... ..+......+ +....++...-+.+...-.++|+..|-..++.|..+-+
T Consensus 119 ~~a~~iLt~l~~~~~~--------~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~ 183 (429)
T cd00256 119 HMSFSILAKLACFGLA--------KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL 183 (429)
T ss_pred HHHHHHHHHHHhcCcc--------ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH
Confidence 9999999998864332 1121122222 23333333333578888889999999999988877653
No 17
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=50.09 E-value=1e+02 Score=30.61 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=82.6
Q ss_pred HHHhhhchhhHHHHHhhcccccccccccccCCCCC-ccchhhhhhhhhhhhhccchHHHHHHHHhh---chhhhhhhhhc
Q psy8417 122 LQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRP-FEYLRLTSLGVIGALVKTDEQEVITFLLTT---EIIPLCLRIME 197 (326)
Q Consensus 122 LQcvAshpetR~~FL~A~iplyLyPfLnttsk~r~-fE~LRLtSLGVIgaLvK~dd~evI~fLL~T---EIiPLCLriME 197 (326)
-|.++.|-+.-..|++.+|- ..+++..| -..|-..+|-..|.++- ++++++.|-.. .++=.|++.++
T Consensus 30 ~~~l~~k~~~l~~~i~rDi~-------~~~~~~~p~~~~L~~qALkll~~~l~--~~~i~~~l~~d~~~~~i~~~i~~l~ 100 (372)
T PF12231_consen 30 RQALQDKMSLLLQFIQRDIS-------SSSSKGDPFDSRLVIQALKLLGFFLY--HPEIVSTLSDDFASFIIDHSIESLQ 100 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------cccCCCCCcchHHHHHHHHHHHHHHc--cHHHHhhCChHHHHHHHHHHHHHHc
Confidence 35566777777788888877 55566666 56666778888998886 55566666554 36677888777
Q ss_pred cccchhhHHHHHHHHHHhcccccchhhhcchhhhHHHHHHHHHHHHHHhh-cCCchhHHHHHHHHHHhhcCH
Q psy8417 198 SGSELSKTVATFILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEK-DQSSRLLKHVVRCYLRLSDNA 268 (326)
Q Consensus 198 ~GsElSKtvAtfIlqKIL~dd~GL~YiC~T~eRF~aV~~vL~~mV~~l~~-~ps~RLLKhIIrCYlRLsdn~ 268 (326)
.++ .+|++++.-+.=+=.-.-+-.+. |.+|-..+..++.+ +.+ -+|.-+.-..+.||.||-.+.
T Consensus 101 ~~~-~~K~i~~~~l~~ls~Q~f~~~~~--~~~~~~~l~~~l~~----i~~~~~s~si~~erL~i~~~ll~q~ 165 (372)
T PF12231_consen 101 NPN-SPKSICTHYLWCLSDQKFSPKIM--TSDRVERLLAALHN----IKNRFPSKSIISERLNIYKRLLSQF 165 (372)
T ss_pred CCC-CCHHHHHHHHHHHHcCCCCCccc--chhhHHHHHHHHHH----hhccCCchhHHHHHHHHHHHHHHHH
Confidence 766 49999988777554444444433 33443333333333 333 466666666666776665543
No 18
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=49.11 E-value=2.1e+02 Score=26.75 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCcchHHHHHHHHHhhcccCCChhhHhhhhhhh
Q psy8417 45 EKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGT 87 (326)
Q Consensus 45 ~~v~q~I~~L~~p~~Re~AL~eLsk~re~~~dLa~~LW~S~Gt 87 (326)
-.+.|-+.+.++++.|...+.++. +++..+.=|.+|.
T Consensus 58 ~~vvq~~l~~~~~~~~~~i~~~~~------~~~~~l~~~~~g~ 94 (322)
T cd07920 58 NYVIQKLFEHGTEEQRLQLLEKIL------GHVVRLSLDMYGC 94 (322)
T ss_pred cHHHHHHHHhCCHHHHHHHHHHHH------HHHHHHcccchhH
Confidence 356778888888888887776654 3344444444443
No 19
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=47.38 E-value=2e+02 Score=25.46 Aligned_cols=184 Identities=18% Similarity=0.203 Sum_probs=94.2
Q ss_pred CCcchHHHHHHHHHhhcccC--CChhhHhhhhhhhHHHHHHHHHhhcCCCCCCCCChhhhhhHHHHHHHHHHhhhchhhH
Q psy8417 55 SIPETRENALLELSKKREVV--PDLAPMLWHSFGTIAALLQEIINIYPTINPATLTAHQSNRVCNALALLQCVASHQETR 132 (326)
Q Consensus 55 ~~p~~Re~AL~eLsk~re~~--~dLa~~LW~S~Gtia~LLQEIisiYp~L~pp~Lt~~~SnRVCnaLaLLQcvAshpetR 132 (326)
.+=+.|.+||..|...-... .+..+.++.....+. .-|+ . .++..-|.=+-+|+.+++-++.+-...
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~---~~i~---~-----~l~d~Rs~v~~~A~~~l~~l~~~l~~~ 87 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLL---DAII---K-----QLSDLRSKVSKTACQLLSDLARQLGSH 87 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH------HHHH---H------S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhH---HHHH---H-----HHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence 45577999998887654432 333344443333111 1111 1 233334445558888888888765443
Q ss_pred HHHHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccchHHHHHHHHhhch-hhhhhhhhccccchhhHHHHHHH
Q psy8417 133 SLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEI-IPLCLRIMESGSELSKTVATFIL 211 (326)
Q Consensus 133 ~~FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~TEI-iPLCLriME~GsElSKtvAtfIl 211 (326)
++..+..++-+.|.....++. .+|=+.--++-++++.-. ..+.+ ++.+...+...+-..|..+.-.+
T Consensus 88 ---~~~~~~~~l~~Ll~~~~~~~~--~i~~~a~~~L~~i~~~~~-------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l 155 (228)
T PF12348_consen 88 ---FEPYADILLPPLLKKLGDSKK--FIREAANNALDAIIESCS-------YSPKILLEILSQGLKSKNPQVREECAEWL 155 (228)
T ss_dssp ---GHHHHHHHHHHHHHGGG---H--HHHHHHHHHHHHHHTTS--------H--HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHccccH--HHHHHHHHHHHHHHHHCC-------cHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 455567777777777666553 356556666666666544 01223 45555566776666666666666
Q ss_pred HHHhcccccchhhhcchhhhHHHH--HHHHHHHHHHhhcCCchhHHHHHHHHHHhhcC
Q psy8417 212 QKILLDDSGLSYICQTYDRFSHVA--MILGKMVISLEKDQSSRLLKHVVRCYLRLSDN 267 (326)
Q Consensus 212 qKIL~dd~GL~YiC~T~eRF~aV~--~vL~~mV~~l~~~ps~RLLKhIIrCYlRLsdn 267 (326)
..++..-. .+.+.+..-. .-+-+++..+..++++.+=+..-+||..+..+
T Consensus 156 ~~~l~~~~------~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 156 AIILEKWG------SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHTT-----------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcc------chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 65554332 1112222221 34556667777888888888888888877554
No 20
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=42.29 E-value=1.6e+02 Score=30.06 Aligned_cols=180 Identities=21% Similarity=0.240 Sum_probs=100.2
Q ss_pred HHHHhhhchhhHHHHHhhc----cccccccccc---ccCCCC----------Cccchhhhhhhhh--------hhhhccc
Q psy8417 121 LLQCVASHQETRSLFLAAH----IPLFLYPFLH---TTSKTR----------PFEYLRLTSLGVI--------GALVKTD 175 (326)
Q Consensus 121 LLQcvAshpetR~~FL~A~----iplyLyPfLn---ttsk~r----------~fE~LRLtSLGVI--------gaLvK~d 175 (326)
+||.+.+.+-.+-.+|+.. |.-|+--|+- .....+ .-|.+|-+.|.|| |...+..
T Consensus 148 ~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~~~~~~p~p~ 227 (373)
T PF14911_consen 148 FLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTPRNEELRKFILQVIRSNFLEFKGSAPPPR 227 (373)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 5677766666666666554 2233322222 222222 2566677777776 4344444
Q ss_pred hHHHHHHHHh---h----------c----hhhhhhh-hhccc-cchhhHHHHHHHHHHhcccccchhhhcchhhhHHHHH
Q psy8417 176 EQEVITFLLT---T----------E----IIPLCLR-IMESG-SELSKTVATFILQKILLDDSGLSYICQTYDRFSHVAM 236 (326)
Q Consensus 176 d~evI~fLL~---T----------E----IiPLCLr-iME~G-sElSKtvAtfIlqKIL~dd~GL~YiC~T~eRF~aV~~ 236 (326)
-.-++.|+.+ . . +.|-.|+ .|-.+ .+-+|..|+-+++.|+.+-. +++=..+..
T Consensus 228 l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~--------~~~~~~~~~ 299 (373)
T PF14911_consen 228 LASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ--------VGSSGEPRE 299 (373)
T ss_pred HHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc--------ccCcchHHH
Confidence 4455555443 1 1 2344443 35567 78899999999999997644 222233334
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHhhc-CHHHHHHHHhhCCcccccchhhhhhcCCHHHHHHHHHHHHHh
Q psy8417 237 ILGKMVISLEKDQSSRLLKHVVRCYLRLSD-NARAREALRQCLPDQLRDSTFSVCLNDDKSTKNWLAQLIKNL 308 (326)
Q Consensus 237 vL~~mV~~l~~~ps~RLLKhIIrCYlRLsd-n~rar~aL~~~LP~~Lrd~tf~~~l~~D~~~k~wl~qLl~nl 308 (326)
.+.+.+.+++++--..==.++.+.--.+++ ||..-..|-..+-..++|.+-..=+..|...++.|.+|+..+
T Consensus 300 ~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~~~l 372 (373)
T PF14911_consen 300 QLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDPQLVISLIPTIRQSLKDSERKRGLGRDVALRKALSRLLSHL 372 (373)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhc
Confidence 444444444433221111222222223333 665555555555567777777777888999999999998765
No 21
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=38.92 E-value=4.1e+02 Score=26.48 Aligned_cols=234 Identities=17% Similarity=0.219 Sum_probs=120.5
Q ss_pred HHHHHHHHhCCcc--hHHHHHHHHHhhcccCCChhhHhhhhhhhHHHHHHHHHhhcCCCCCCCCChhhhhhHHHHHHHHH
Q psy8417 46 KIYQWILELSIPE--TRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATLTAHQSNRVCNALALLQ 123 (326)
Q Consensus 46 ~v~q~I~~L~~p~--~Re~AL~eLsk~re~~~dLa~~LW~S~Gtia~LLQEIisiYp~L~pp~Lt~~~SnRVCnaLaLLQ 123 (326)
-+..+..||.+++ .|..||.-||.-+. |++++.+ +..|... ++ +.+..-|=..++++.+
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~l----------~~~v~~l---l~----~~~~~VRk~A~~~l~~ 140 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEPL----------IPDVIKL---LS----DPSPYVRKKAALALLK 140 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHHH----------HHHHHHH---HH----SSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhHH----------HHHHHHH---hc----CCchHHHHHHHHHHHH
Confidence 3456778887655 68999999999873 5666544 2222222 11 1223567778899999
Q ss_pred HhhhchhhHHH-HHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccchHHHHHHHHhhchhhhhhhhhccccch
Q psy8417 124 CVASHQETRSL-FLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSEL 202 (326)
Q Consensus 124 cvAshpetR~~-FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~TEIiPLCLriME~GsEl 202 (326)
..-..|+.-.. |++. |...|+ ++ ---.+.+.+.++..+ |.+++... -+-...+....+++...++.
T Consensus 141 i~~~~p~~~~~~~~~~-----l~~lL~----d~-~~~V~~~a~~~l~~i-~~~~~~~~--~~~~~~~~~L~~~l~~~~~~ 207 (526)
T PF01602_consen 141 IYRKDPDLVEDELIPK-----LKQLLS----DK-DPSVVSAALSLLSEI-KCNDDSYK--SLIPKLIRILCQLLSDPDPW 207 (526)
T ss_dssp HHHHCHCCHHGGHHHH-----HHHHTT----HS-SHHHHHHHHHHHHHH-HCTHHHHT--THHHHHHHHHHHHHTCCSHH
T ss_pred HhccCHHHHHHHHHHH-----Hhhhcc----CC-cchhHHHHHHHHHHH-ccCcchhh--hhHHHHHHHhhhcccccchH
Confidence 98888887544 2222 333332 11 134566777777777 54443322 11112223333334567777
Q ss_pred hhHHHHHHHHHHhcccccchhh----hcchhhhHHH-HHHHHHHHHHHh-hcCCchhHHHHHHHHHHhhcCHH------H
Q psy8417 203 SKTVATFILQKILLDDSGLSYI----CQTYDRFSHV-AMILGKMVISLE-KDQSSRLLKHVVRCYLRLSDNAR------A 270 (326)
Q Consensus 203 SKtvAtfIlqKIL~dd~GL~Yi----C~T~eRF~aV-~~vL~~mV~~l~-~~ps~RLLKhIIrCYlRLsdn~r------a 270 (326)
.+..+.-++.++...+....+- -.-.+.+... ..|+-..+..+. -.|++.+++.++..+.++-.++. +
T Consensus 208 ~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~ 287 (526)
T PF01602_consen 208 LQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIA 287 (526)
T ss_dssp HHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhH
Confidence 7766666666555443333311 1111111100 111111122222 24666688888888877755432 2
Q ss_pred HHHHHhhC---Ccccccchhh--hhh-cCCHHHHHHHHHHHHHhccc
Q psy8417 271 REALRQCL---PDQLRDSTFS--VCL-NDDKSTKNWLAQLIKNLESV 311 (326)
Q Consensus 271 r~aL~~~L---P~~Lrd~tf~--~~l-~~D~~~k~wl~qLl~nl~~~ 311 (326)
.+.|.+.. |..+++..+. .+. .+|+.+|++-.+++.++..+
T Consensus 288 L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 288 LDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp HHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred HHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 33344332 3334332222 222 57999999999998888653
No 22
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=37.71 E-value=1.4e+02 Score=27.30 Aligned_cols=106 Identities=20% Similarity=0.353 Sum_probs=74.1
Q ss_pred hhhhhhhhhhhhhcc-chHHHHHHHHhhchhhhh------------hhhhccccchhhHHHHHHHHHHhccc-ccchhhh
Q psy8417 160 LRLTSLGVIGALVKT-DEQEVITFLLTTEIIPLC------------LRIMESGSELSKTVATFILQKILLDD-SGLSYIC 225 (326)
Q Consensus 160 LRLtSLGVIgaLvK~-dd~evI~fLL~TEIiPLC------------LriME~GsElSKtvAtfIlqKIL~dd-~GL~YiC 225 (326)
+|.+.|.-+++++|. |......| +..++|-. --+.--.+.-.+..|.-.+.-+|..- .=|.+.+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~y--W~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGY--WPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhh--HHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHH
Confidence 699999999999999 55555444 34444443 33444567777888888888877552 2234444
Q ss_pred cch---hhhHHHHHHHHHHHHH--------HhhcCCchhHHHHHHHHHHhhcC
Q psy8417 226 QTY---DRFSHVAMILGKMVIS--------LEKDQSSRLLKHVVRCYLRLSDN 267 (326)
Q Consensus 226 ~T~---eRF~aV~~vL~~mV~~--------l~~~ps~RLLKhIIrCYlRLsdn 267 (326)
.+- --|...+..|+.|+.+ +..+.++.++-++++|-.-|.+|
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~ 132 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQA 132 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHcc
Confidence 332 2488889999999886 45778899999999997766654
No 23
>KOG1991|consensus
Probab=34.07 E-value=8.1e+02 Score=28.55 Aligned_cols=193 Identities=19% Similarity=0.343 Sum_probs=116.7
Q ss_pred HHHHHhCCcchHHHH-HHHHHhhc--ccCCChhhHhhhhhhhHHHHHHHHHhhcCCCCCCCCChhh---hhhHHHHHHHH
Q psy8417 49 QWILELSIPETRENA-LLELSKKR--EVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATLTAHQ---SNRVCNALALL 122 (326)
Q Consensus 49 q~I~~L~~p~~Re~A-L~eLsk~r--e~~~dLa~~LW~S~Gtia~LLQEIisiYp~L~pp~Lt~~~---SnRVCnaLaLL 122 (326)
.-..|...|++-... +.++.+|| |++| |+++ ++-+|..-|-.=++++-.+.+ +-|+-..|+
T Consensus 380 Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~----------k~l~-F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~-- 446 (1010)
T KOG1991|consen 380 DIFEDGYSPDTAALDFLTTLVSKRGKETLP----------KILS-FIVDILTRYKEASPPNKNPRQKDGALRMVGSLA-- 446 (1010)
T ss_pred chhcccCCCcHHHHHHHHHHHHhcchhhhh----------hHHH-HHHHHHHhhcccCCCccChhhhhhHHHHHHHHH--
Confidence 445667778775444 45666777 4666 3333 444666666555454443333 233332222
Q ss_pred HHhhhch----hhHHHHHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccchHHHHHHHHhhchhhhhhhhhcc
Q psy8417 123 QCVASHQ----ETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMES 198 (326)
Q Consensus 123 QcvAshp----etR~~FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~TEIiPLCLriME~ 198 (326)
.+-.-+ +.=..||.. |++|+++ .|.-|||=-+.-|++..-..|=++=-++. +++-+..+.|-.
T Consensus 447 -~~L~K~s~~~~~mE~flv~----hVfP~f~-----s~~g~Lrarac~vl~~~~~~df~d~~~l~---~ale~t~~~l~~ 513 (1010)
T KOG1991|consen 447 -SILLKKSPYKSQMEYFLVN----HVFPEFQ-----SPYGYLRARACWVLSQFSSIDFKDPNNLS---EALELTHNCLLN 513 (1010)
T ss_pred -HHHccCCchHHHHHHHHHH----HhhHhhc-----CchhHHHHHHHHHHHHHHhccCCChHHHH---HHHHHHHHHhcc
Confidence 222222 222334444 4567776 45788998888888777644333322232 334444445553
Q ss_pred ccch-hhHHHHHHHHHHhcccccc-hhhh----cchhhhHHH---------HHHHHHHHHHHhhcCCc---hhHHHHHHH
Q psy8417 199 GSEL-SKTVATFILQKILLDDSGL-SYIC----QTYDRFSHV---------AMILGKMVISLEKDQSS---RLLKHVVRC 260 (326)
Q Consensus 199 GsEl-SKtvAtfIlqKIL~dd~GL-~YiC----~T~eRF~aV---------~~vL~~mV~~l~~~ps~---RLLKhIIrC 260 (326)
.+|+ -|.-|++-+|-.++++.-. .|+- .+.+.|..+ ++|+.+||.+..++-+| -|-+|..+.
T Consensus 514 d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~ 593 (1010)
T KOG1991|consen 514 DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAET 593 (1010)
T ss_pred CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 4444 6888999999999988866 5443 344666655 57888889888888665 899999999
Q ss_pred HHHhhcC
Q psy8417 261 YLRLSDN 267 (326)
Q Consensus 261 YlRLsdn 267 (326)
++|+.++
T Consensus 594 F~k~l~~ 600 (1010)
T KOG1991|consen 594 FLKVLQT 600 (1010)
T ss_pred HHHHHhc
Confidence 9999885
No 24
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=31.54 E-value=1.3e+02 Score=28.94 Aligned_cols=117 Identities=19% Similarity=0.268 Sum_probs=83.5
Q ss_pred hhhhhhhhhccchHHHH-----HHHHh-hchhhhhhhhhcccc-----chhhHHHHHHHHHHhc-ccccchhhhcch--h
Q psy8417 164 SLGVIGALVKTDEQEVI-----TFLLT-TEIIPLCLRIMESGS-----ELSKTVATFILQKILL-DDSGLSYICQTY--D 229 (326)
Q Consensus 164 SLGVIgaLvK~dd~evI-----~fLL~-TEIiPLCLriME~Gs-----ElSKtvAtfIlqKIL~-dd~GL~YiC~T~--e 229 (326)
++.+..-|++..+.++| .+++. .-.+|-||..+|.++ +..+.+|.-|-+--=. ...+|.-+=..+ .
T Consensus 82 tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ya~~ 161 (262)
T PF14225_consen 82 TLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSYAKG 161 (262)
T ss_pred HHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhc
Confidence 55666666665544444 23333 567999999999999 7788888888776521 345666666555 5
Q ss_pred hhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCH------HHHHHHHhhCCc
Q psy8417 230 RFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNA------RAREALRQCLPD 280 (326)
Q Consensus 230 RF~aV~~vL~~mV~~l~~~ps~RLLKhIIrCYlRLsdn~------rar~aL~~~LP~ 280 (326)
||.....-+..++..+.+..-|+.--+++-.++.|-+|. ..-..|+..+|.
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~ 218 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPH 218 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcc
Confidence 777888888999999988888888888888899988876 344555555665
No 25
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=29.53 E-value=6.2e+02 Score=26.41 Aligned_cols=33 Identities=27% Similarity=0.151 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhchhhHHHHHhhccccccccccc
Q psy8417 117 NALALLQCVASHQETRSLFLAAHIPLFLYPFLH 149 (326)
Q Consensus 117 naLaLLQcvAshpetR~~FL~A~iplyLyPfLn 149 (326)
-++..||.+..+++.|..|.+++..-+|.+.|.
T Consensus 163 ~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~ 195 (429)
T cd00256 163 TAARCLQMLLRVDEYRFAFVLADGVPTLVKLLS 195 (429)
T ss_pred HHHHHHHHHhCCchHHHHHHHccCHHHHHHHHh
Confidence 445677888888888888888875555555554
No 26
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=29.46 E-value=1e+02 Score=28.81 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHhhcCHHHHHHHHhhC
Q psy8417 252 RLLKHVVRCYLRLSDNARAREALRQCL 278 (326)
Q Consensus 252 RLLKhIIrCYlRLsdn~rar~aL~~~L 278 (326)
.+++.+.+=+..|+.|+.+...+.+++
T Consensus 147 ~i~~~l~~~~~~l~~~~~G~~vvq~~l 173 (322)
T cd07920 147 FIIDAFKGNCVALSTHPYGCRVIQRCL 173 (322)
T ss_pred HHHHHHHHHHHHHHcCccccHHHHHHH
Confidence 444444444555555555544444443
No 27
>PLN00211 predicted protein; Provisional
Probab=27.52 E-value=43 Score=25.98 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhhcCCCCCCC
Q psy8417 87 TIAALLQEIINIYPTINPAT 106 (326)
Q Consensus 87 tia~LLQEIisiYp~L~pp~ 106 (326)
-|+.+|-||.|+|..|+.++
T Consensus 31 hMtsfLAeIwSVyr~LSqES 50 (61)
T PLN00211 31 HMTSFLAEIWSVYRPLSHES 50 (61)
T ss_pred HHHHHHHHHHHHhchhhhhh
Confidence 47899999999999998654
No 28
>PF14776 UNC-79: Cation-channel complex subunit UNC-79
Probab=26.47 E-value=1.5e+02 Score=31.71 Aligned_cols=117 Identities=20% Similarity=0.348 Sum_probs=67.0
Q ss_pred HHHhhcCCCCCCCCChhhhhhHHHHHHHHHHhhhchhhHHHHHhhcccccccccccccCCCCCccchhhhhhhhhhhhhc
Q psy8417 94 EIINIYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVK 173 (326)
Q Consensus 94 EIisiYp~L~pp~Lt~~~SnRVCnaLaLLQcvAshpetR~~FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK 173 (326)
-++.++|.|+...-.-.+ ++|||++. |+|||+-. -.+.|=++--+-++.+=-
T Consensus 25 ~Lldv~p~i~~g~~~~g~--------ail~~i~c----------------llpFLd~d----~ld~lPy~~AS~L~~~P~ 76 (525)
T PF14776_consen 25 NLLDVFPLIQHGQQDFGK--------AILQTITC----------------LLPFLDRD----CLDTLPYLLASQLATFPP 76 (525)
T ss_pred HHHhHhhhcccchHHHHH--------HHHHHHHH----------------hhhccCHh----hhhcchHHHHHHHHhcCH
Confidence 356788888754322222 68888754 78999642 233333332222232222
Q ss_pred cchHHHHHHHHhhchhhhhhhhhccccc--hhhHHHHHHHHHHhcccccchhhhcchhhhHHHHHHHHH
Q psy8417 174 TDEQEVITFLLTTEIIPLCLRIMESGSE--LSKTVATFILQKILLDDSGLSYICQTYDRFSHVAMILGK 240 (326)
Q Consensus 174 ~dd~evI~fLL~TEIiPLCLriME~GsE--lSKtvAtfIlqKIL~dd~GL~YiC~T~eRF~aV~~vL~~ 240 (326)
.-.++||+ +|.+=++|.++-.+.-|.| .+-+|+. |+--++-.-.-..|-||-.|=|.+.-.=+.+
T Consensus 77 ~lh~~Iv~-lLc~~iLPf~i~~~~~~~~sy~~~Sv~~-vimlV~q~~~~~~~H~qllE~lM~~K~~v~k 143 (525)
T PF14776_consen 77 SLHQDIVN-LLCYYILPFTITRRNDGQESYASLSVPS-VIMLVFQHSHDPSHHCQLLECLMSLKQNVWK 143 (525)
T ss_pred HHHHHHHH-HHHHhhcceeeeccCCCCcchhhhhHHH-HHHHHHHccCCHHHHHHHHHHHHHhCccHHH
Confidence 23466775 5567799999954544544 3333333 3344455667788889888888776443333
No 29
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=25.97 E-value=4.9e+02 Score=26.29 Aligned_cols=139 Identities=20% Similarity=0.298 Sum_probs=82.3
Q ss_pred hhhHHHHHHHHHHhhhchhhHHHHHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccchHHHHHHHHhhchhhh
Q psy8417 112 SNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPL 191 (326)
Q Consensus 112 SnRVCnaLaLLQcvAshpetR~~FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~TEIiPL 191 (326)
+.-++.++=++=.+.++++.-..+++-|++.|+--=|...++. |.=|...|-.|-+++..++
T Consensus 39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~---~~ER~QALkliR~~l~~~~--------------- 100 (371)
T PF14664_consen 39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKN---DVEREQALKLIRAFLEIKK--------------- 100 (371)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCC---hHHHHHHHHHHHHHHHhcC---------------
Confidence 3445666777778889999999999999999987766655443 3335555555555544321
Q ss_pred hhhhhccccchhhHHHHHHHHHHhcccccchhhhc---------chhhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH
Q psy8417 192 CLRIMESGSELSKTVATFILQKILLDDSGLSYICQ---------TYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYL 262 (326)
Q Consensus 192 CLriME~GsElSKtvAtfIlqKIL~dd~GL~YiC~---------T~eRF~aV~~vL~~mV~~l~~~ps~RLLKhIIrCYl 262 (326)
.-+|+++.++.-|+.=.-..|+.+..+|- .++-+.+.+ -++-++..+.+ ++..+-.-++...+
T Consensus 101 ------~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~g-G~~~L~~~l~d-~~~~~~~~l~~~lL 172 (371)
T PF14664_consen 101 ------GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECG-GIRVLLRALID-GSFSISESLLDTLL 172 (371)
T ss_pred ------CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcC-CHHHHHHHHHh-ccHhHHHHHHHHHH
Confidence 11244555544444444444444443331 122222221 12334444555 44448888888899
Q ss_pred HhhcCHHHHHHHHh
Q psy8417 263 RLSDNARAREALRQ 276 (326)
Q Consensus 263 RLsdn~rar~aL~~ 276 (326)
.+-|+|+.|.-++.
T Consensus 173 ~lLd~p~tR~yl~~ 186 (371)
T PF14664_consen 173 YLLDSPRTRKYLRP 186 (371)
T ss_pred HHhCCcchhhhhcC
Confidence 99999988877765
No 30
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=24.38 E-value=1.7e+02 Score=23.41 Aligned_cols=72 Identities=22% Similarity=0.189 Sum_probs=46.6
Q ss_pred HHHHHHhCCcchHHHHHHHHHhhcccCCChhhHhhhhhhhHHHHHHHHHhhcCCCCCCCC---------ChhhhhhHHHH
Q psy8417 48 YQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATL---------TAHQSNRVCNA 118 (326)
Q Consensus 48 ~q~I~~L~~p~~Re~AL~eLsk~re~~~dLa~~LW~S~Gtia~LLQEIisiYp~L~pp~L---------t~~~SnRVCna 118 (326)
.++|.-|+++.. ..-+.|-+.-.+-..+|.+...||..+++.|....+... ....-.|||++
T Consensus 3 ~~Li~~L~~~~~---------~~d~~f~~~FllTyrsF~s~~~ll~~L~~rf~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 73 (122)
T cd06224 3 EALIEHLTSTFD---------MPDPSFVSTFLLTYRSFTTPTELLEKLIERYEIAPPENLEYNDWDKKKSKPIRLRVLNV 73 (122)
T ss_pred HHHHHHHcCCCc---------cccHHHHHHHHHHhhhhCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 356666666654 112233344566788999999999999999998766542 22334577777
Q ss_pred HHHHHHhhhchh
Q psy8417 119 LALLQCVASHQE 130 (326)
Q Consensus 119 LaLLQcvAshpe 130 (326)
+ -+-|..||+
T Consensus 74 l--~~Wv~~~~~ 83 (122)
T cd06224 74 L--RTWVENYPY 83 (122)
T ss_pred H--HHHHHhCCC
Confidence 5 356666664
No 31
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=24.24 E-value=4.7e+02 Score=25.48 Aligned_cols=66 Identities=20% Similarity=0.302 Sum_probs=42.7
Q ss_pred hhhhhhHHHHHHHHHhhcCCCCCCCCChhhhhhHHHHHHHHHHhh-hchhhHHHHHhhccccccccccc
Q psy8417 82 WHSFGTIAALLQEIINIYPTINPATLTAHQSNRVCNALALLQCVA-SHQETRSLFLAAHIPLFLYPFLH 149 (326)
Q Consensus 82 W~S~Gtia~LLQEIisiYp~L~pp~Lt~~~SnRVCnaLaLLQcvA-shpetR~~FL~A~iplyLyPfLn 149 (326)
|+-..-....+.-+.+.-++..+ +. +....-+|+||-+||.+. -||.-|..|=+.+-.--|..+|.
T Consensus 77 ~Nl~~~Lv~~l~~l~~~~~~~~~-~~-~~~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~ 143 (257)
T PF08045_consen 77 WNLASRLVSWLDRLLGRGSHIDG-DS-PSNDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLS 143 (257)
T ss_pred cchhhhhHHHHHHHHhhcccccC-cc-cchhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhc
Confidence 55443333334444444443333 11 122235899999999888 89999999999887777888884
No 32
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=22.88 E-value=1.9e+02 Score=21.34 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=16.5
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHhhcCHHHHHHHHh
Q psy8417 241 MVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQ 276 (326)
Q Consensus 241 mV~~l~~~ps~RLLKhIIrCYlRLsdn~rar~aL~~ 276 (326)
++..+.+++++.+=.++++|--++ .++++...|.+
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~-~~~~~~~~L~~ 38 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL-GDPEAIPALIE 38 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC-THHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc-CCHhHHHHHHH
Confidence 344444555555555555555443 34444444443
No 33
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=22.70 E-value=4.9e+02 Score=22.27 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhc-CCchhHHHHHHHHHHhhcCHHHHHHHHhhCCcccccchhhhhhcCCHHHHHHHHHHHHHh
Q psy8417 236 MILGKMVISLEKD-QSSRLLKHVVRCYLRLSDNARAREALRQCLPDQLRDSTFSVCLNDDKSTKNWLAQLIKNL 308 (326)
Q Consensus 236 ~vL~~mV~~l~~~-ps~RLLKhIIrCYlRLsdn~rar~aL~~~LP~~Lrd~tf~~~l~~D~~~k~wl~qLl~nl 308 (326)
.+|..+...-... ....+...++||.--|.++..+++++-+ -|+.+ +.-...+.-.++.++.+..++|.-+
T Consensus 114 ~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~-~~~~v-~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 114 NVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLS-HPDSV-NLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHC-SSSHH-HHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHc-CcHHH-HHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 3444443332222 4557888899999999999998888877 55555 2233334466899999999998754
No 34
>KOG2171|consensus
Probab=22.34 E-value=1.3e+03 Score=27.15 Aligned_cols=191 Identities=23% Similarity=0.261 Sum_probs=122.4
Q ss_pred HHHHHHHHHhCCcch--H---HHHHHHHHhhcccCCChhhHhhhhhh-----hHHHHHHHHHhh-cCCCCCCCCChhhhh
Q psy8417 45 EKIYQWILELSIPET--R---ENALLELSKKREVVPDLAPMLWHSFG-----TIAALLQEIINI-YPTINPATLTAHQSN 113 (326)
Q Consensus 45 ~~v~q~I~~L~~p~~--R---e~AL~eLsk~re~~~dLa~~LW~S~G-----tia~LLQEIisi-Yp~L~pp~Lt~~~Sn 113 (326)
....|++..|..||. | |+++..+.+.-...|-|+-.+-++-- .-++|+.-+.+- |+.|+ ++.-+
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~-----~e~~~ 78 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLS-----AEVQQ 78 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCC-----HHHHH
Confidence 457799999998876 4 67777777666666666666666543 356677776654 44444 32222
Q ss_pred hHHHHHHHHHHhhhchhhHHHHHhhcccccccccccccCCCCCccchhhhhhhhhhhhhccchHHHHHHHHhhchhhhhh
Q psy8417 114 RVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCL 193 (326)
Q Consensus 114 RVCnaLaLLQcvAshpetR~~FL~A~iplyLyPfLnttsk~r~fE~LRLtSLGVIgaLvK~dd~evI~fLL~TEIiPLCL 193 (326)
++=. .||+|+-+. +-+.+|-..=-||+.+.+.+=+| -+-|+++...
T Consensus 79 siks--~lL~~~~~E---------------------------~~~~vr~k~~dviAeia~~~l~e-----~WPell~~L~ 124 (1075)
T KOG2171|consen 79 SIKS--SLLEIIQSE---------------------------TEPSVRHKLADVIAEIARNDLPE-----KWPELLQFLF 124 (1075)
T ss_pred HHHH--HHHHHHHhc---------------------------cchHHHHHHHHHHHHHHHhcccc-----chHHHHHHHH
Confidence 2211 244444332 23456777778999999987766 6677777777
Q ss_pred hhhccccchhhHHHHHHHHHHhcccccchhhhcchhhhHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH----HhhcCHH
Q psy8417 194 RIMESGSELSKTVATFILQKILLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYL----RLSDNAR 269 (326)
Q Consensus 194 riME~GsElSKtvAtfIlqKIL~dd~GL~YiC~T~eRF~aV~~vL~~mV~~l~~~ps~RLLKhIIrCYl----RLsdn~r 269 (326)
..-.++.+--+=.|-+|+.-+...= .++|.+--..+-.|..+-..+||.++--.-+|.+. -+.+|+.
T Consensus 125 q~~~S~~~~~rE~al~il~s~~~~~---------~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 125 QSTKSPNPSLRESALLILSSLPETF---------GNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred HHhcCCCcchhHHHHHHHHhhhhhh---------ccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchH
Confidence 7777777777778888887643221 13455333456667777677788774444444432 2336888
Q ss_pred HHHHHHhhCCcccc
Q psy8417 270 AREALRQCLPDQLR 283 (326)
Q Consensus 270 ar~aL~~~LP~~Lr 283 (326)
-+..++.-||..+.
T Consensus 196 ~~~~~~~llP~~l~ 209 (1075)
T KOG2171|consen 196 EVDKFRDLLPSLLN 209 (1075)
T ss_pred HHHHHHHHhHHHHH
Confidence 99999999997665
No 35
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=22.23 E-value=1.8e+02 Score=20.29 Aligned_cols=51 Identities=14% Similarity=0.290 Sum_probs=33.8
Q ss_pred hhhhhhhhhhhhhccchHHHHHHHHhhchhhhhhhhhccccchhhHHHHHHHH
Q psy8417 160 LRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQ 212 (326)
Q Consensus 160 LRLtSLGVIgaLvK~dd~evI~fLL~TEIiPLCLriME~GsElSKtvAtfIlq 212 (326)
+|-.++-.+|.+........-. ...+++|.....++..++--+.-|.+-+.
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~--~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQP--YLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHH--HHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHhcccHHHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4667777888877655555444 56788898888887766655555555443
No 36
>PF05536 Neurochondrin: Neurochondrin
Probab=20.30 E-value=4e+02 Score=28.24 Aligned_cols=111 Identities=27% Similarity=0.306 Sum_probs=75.9
Q ss_pred hhhHHHHHHHHHHhhhchh----hHHHHHhhcccccccccccccCCC---CCccchhhhhhhhhhhhhccchHHHHHHHH
Q psy8417 112 SNRVCNALALLQCVASHQE----TRSLFLAAHIPLFLYPFLHTTSKT---RPFEYLRLTSLGVIGALVKTDEQEVITFLL 184 (326)
Q Consensus 112 SnRVCnaLaLLQcvAshpe----tR~~FL~A~iplyLyPfLnttsk~---r~fE~LRLtSLGVIgaLvK~dd~evI~fLL 184 (326)
+.|. -+|.++-.+..+.+ +|+...+|==|-||...|+|.+.. .+.+|+.| .+.|+.|.-. ++|+..==-
T Consensus 20 ~~rf-agL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~L-avsvL~~f~~--~~~~a~~~~ 95 (543)
T PF05536_consen 20 TERF-AGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSL-AVSVLAAFCR--DPELASSPQ 95 (543)
T ss_pred HHHH-HHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHH-HHHHHHHHcC--ChhhhcCHH
Confidence 3443 45567777765544 343344666678999999997653 34555554 3445566655 444443333
Q ss_pred hhchhhhhhhhhccccc-hhhHHHHHHHHHHhcccccchhhhc
Q psy8417 185 TTEIIPLCLRIMESGSE-LSKTVATFILQKILLDDSGLSYICQ 226 (326)
Q Consensus 185 ~TEIiPLCLriME~GsE-lSKtvAtfIlqKIL~dd~GL~YiC~ 226 (326)
-.+.||+.+.+|..+++ -.-.-|-.++.-|-....|-+++++
T Consensus 96 ~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~ 138 (543)
T PF05536_consen 96 MVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE 138 (543)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh
Confidence 34789999999999888 6667788899999999999888887
No 37
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=20.30 E-value=46 Score=32.70 Aligned_cols=32 Identities=31% Similarity=0.708 Sum_probs=28.0
Q ss_pred CCCccchhhhhhhhhhhhhccch-HHHHHHHHh
Q psy8417 154 TRPFEYLRLTSLGVIGALVKTDE-QEVITFLLT 185 (326)
Q Consensus 154 ~r~fE~LRLtSLGVIgaLvK~dd-~evI~fLL~ 185 (326)
.++-=+||.++||.||=|.++.| +..++|++-
T Consensus 199 ~~~W~~LeFs~lG~iGKlf~s~dL~~l~~fl~~ 231 (297)
T PF04666_consen 199 SKDWLYLEFSQLGFIGKLFRSSDLPRLARFLLM 231 (297)
T ss_pred CCCceEEEeecCcchhheeccccHHHHHHHHHH
Confidence 37788999999999999999988 888888764
No 38
>PF00618 RasGEF_N: RasGEF N-terminal motif; InterPro: IPR000651 The crystal structure of the guanine nucleotide exchange factor (GEF) region of human Sos1 complexes with Ras has been solved []. The structure consists of two distinct alpha helical structural domains: the N-terminal domain which seems to have a purely structural role and the C-terminal domain which is sufficient for catalytic activity and contains all residues that interact with Ras. A main feature of the catalytic domain is the protrusion of a helical hairpin important for the nucleotide-exchange mechanism. The N-terminal domain is likely to be important for the stability and correct placement of the hairpin structure. This entry represents a domain found in several GEF for Ras-like small GTPases which lies N-terminal to the RasGef (Cdc25-like) domain. ; GO: 0005085 guanyl-nucleotide exchange factor activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3CF6_E 2BYV_E 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=20.15 E-value=1.1e+02 Score=24.18 Aligned_cols=71 Identities=23% Similarity=0.290 Sum_probs=42.2
Q ss_pred HHHHHHHhCCc-chHHHHHHHHHhhcccCCChhhHhhhhhhhHHHHHHHHHhhcCCCCCCCCChh----------hhhhH
Q psy8417 47 IYQWILELSIP-ETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATLTAH----------QSNRV 115 (326)
Q Consensus 47 v~q~I~~L~~p-~~Re~AL~eLsk~re~~~dLa~~LW~S~Gtia~LLQEIisiYp~L~pp~Lt~~----------~SnRV 115 (326)
+.++|.-|+++ +..... |-+--.+-+.+|.+..-||+-++..|..-.|+..... .-.||
T Consensus 7 l~~Li~~L~~~~~~~d~~----------f~~~FllTyr~F~tp~~Ll~~L~~ry~~~~~~~~~~~~~~~~~~~~~i~~rv 76 (104)
T PF00618_consen 7 LEKLIERLTSSFNSDDEE----------FVDTFLLTYRSFTTPEELLDKLIQRYNIPPPNGLSQDESWDQDSQEPIRLRV 76 (104)
T ss_dssp HHHHHHHHCHC-SS-HHH----------HHHHHHHHHHHCS-HHHHHHHHHHHHT---SSS-HHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCHH----------HHHHHHHHhHhhCCHHHHHHHHHHHhcccCCccccccchhhhhhhHHHHHHH
Confidence 34566666655 333222 2334567789999999999999999976666655443 23478
Q ss_pred HHHHHHHHHhhhch
Q psy8417 116 CNALALLQCVASHQ 129 (326)
Q Consensus 116 CnaLaLLQcvAshp 129 (326)
|++|- .-+-.|+
T Consensus 77 ~~~l~--~Wi~~~~ 88 (104)
T PF00618_consen 77 LNVLK--YWIENYP 88 (104)
T ss_dssp HHHHH--HHHHHHC
T ss_pred HHHHH--HHHHHCh
Confidence 88754 4555554
Done!