Your job contains 1 sequence.
>psy8417
MGAIPISEIVVIYPVTIARTNGIMSTQQSPTVLQQQQALLPVEREKIYQWILELSIPETR
ENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATLTAHQSNRVCNALA
LLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKTDEQEVI
TFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLSYICQTYDRFSHVAMILGK
MVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQLRDSTFSVCLNDDKSTKNW
LAQLIKNLESVSAGVVLGAGNNLAPQ
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8417
(326 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F2Z4M8 - symbol:RQCD1 "Uncharacterized protein"... 1223 1.9e-124 1
UNIPROTKB|A7MB47 - symbol:RQCD1 "Cell differentiation pro... 1223 1.9e-124 1
UNIPROTKB|F2Z5T0 - symbol:RQCD1 "Uncharacterized protein"... 1223 1.9e-124 1
UNIPROTKB|Q4R347 - symbol:RQCD1 "Cell differentiation pro... 1223 1.9e-124 1
MGI|MGI:1928902 - symbol:Rqcd1 "rcd1 (required for cell d... 1223 1.9e-124 1
RGD|1311495 - symbol:Rqcd1 "Rcd1 required for cell differ... 1223 1.9e-124 1
UNIPROTKB|Q6IP65 - symbol:rqcd1 "Cell differentiation pro... 1220 3.9e-124 1
UNIPROTKB|Q6P819 - symbol:rqcd1 "Cell differentiation pro... 1220 3.9e-124 1
UNIPROTKB|Q92600 - symbol:RQCD1 "Cell differentiation pro... 1219 4.9e-124 1
UNIPROTKB|Q5R6Z6 - symbol:RQCD1 "Cell differentiation pro... 1219 4.9e-124 1
ZFIN|ZDB-GENE-030131-1558 - symbol:rqcd1 "RCD1 required f... 1205 1.5e-122 1
FB|FBgn0031047 - symbol:Rcd-1 "Required for cell differen... 1121 1.2e-113 1
ASPGD|ASPL0000012996 - symbol:AN3669 species:162425 "Emer... 976 2.8e-98 1
WB|WBGene00016139 - symbol:ntl-9 species:6239 "Caenorhabd... 859 6.0e-97 2
UNIPROTKB|G4NB38 - symbol:MGG_00632 "Cell differentiation... 955 4.7e-96 1
TAIR|locus:2091936 - symbol:AT3G20800 "AT3G20800" species... 941 1.4e-94 1
TAIR|locus:2182315 - symbol:AT5G12980 "AT5G12980" species... 925 7.0e-93 1
POMBASE|SPAC29B12.06c - symbol:rcd1 "RNA-binding protein,... 918 3.9e-92 1
GENEDB_PFALCIPARUM|PFE0375w - symbol:PFE0375w "cell diffe... 913 1.3e-91 1
UNIPROTKB|Q8I427 - symbol:PFE0375w "Cell differentiation ... 913 1.3e-91 1
DICTYBASE|DDB_G0269778 - symbol:DDB_G0269778 "cell differ... 871 3.7e-87 1
CGD|CAL0003168 - symbol:orf19.7198 species:5476 "Candida ... 682 3.1e-85 2
UNIPROTKB|Q5A097 - symbol:CAF40 "Potential CCR4-NOT compl... 682 3.1e-85 2
FB|FBgn0032089 - symbol:Rcd-1r "Rcd-1 related" species:72... 819 1.2e-81 1
SGD|S000005232 - symbol:CAF40 "Component of the CCR4-NOT ... 809 1.4e-80 1
DICTYBASE|DDB_G0275289 - symbol:DDB_G0275289 "cell differ... 567 3.1e-54 1
TAIR|locus:2060221 - symbol:AT2G32550 species:3702 "Arabi... 354 2.3e-32 1
>UNIPROTKB|F2Z4M8 [details] [associations]
symbol:RQCD1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0019221 "cytokine-mediated signaling pathway"
evidence=IEA] [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR016024 Pfam:PF04078 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0019221 GO:GO:0000932
GeneTree:ENSGT00390000001225 OMA:CLPDQLR InterPro:IPR007216
PANTHER:PTHR12262 EMBL:AADN02016787 IPI:IPI00575088
ProteinModelPortal:F2Z4M8 SMR:F2Z4M8 PRIDE:F2Z4M8
Ensembl:ENSGALT00000018598 ArrayExpress:F2Z4M8 Uniprot:F2Z4M8
Length = 299
Score = 1223 (435.6 bits), Expect = 1.9e-124, P = 1.9e-124
Identities = 238/272 (87%), Positives = 253/272 (93%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
AL V+REKIYQWI ELS PETRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+N
Sbjct: 13 ALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVN 72
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPF
Sbjct: 73 IYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPF 132
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD
Sbjct: 133 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 192
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQC 277
D+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQC
Sbjct: 193 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 252
Query: 278 LPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLE 309
LPDQL+D+TF+ L DD +TK WLAQL+KNL+
Sbjct: 253 LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ 284
>UNIPROTKB|A7MB47 [details] [associations]
symbol:RQCD1 "Cell differentiation protein RCD1 homolog"
species:9913 "Bos taurus" [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0019221
"cytokine-mediated signaling pathway" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR016024 Pfam:PF04078 GO:GO:0005634 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006355 GO:GO:0019221
GO:GO:0006351 GO:GO:0000932 eggNOG:COG5209
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327
EMBL:BC151334 IPI:IPI00708460 RefSeq:NP_001094637.1
UniGene:Bt.23678 ProteinModelPortal:A7MB47 SMR:A7MB47 STRING:A7MB47
PRIDE:A7MB47 Ensembl:ENSBTAT00000004955 GeneID:536537
KEGG:bta:536537 CTD:9125 HOVERGEN:HBG056785 InParanoid:A7MB47
OrthoDB:EOG4W9J4C NextBio:20876967 Uniprot:A7MB47
Length = 299
Score = 1223 (435.6 bits), Expect = 1.9e-124, P = 1.9e-124
Identities = 238/272 (87%), Positives = 253/272 (93%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
AL V+REKIYQWI ELS PETRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+N
Sbjct: 13 ALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVN 72
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPF
Sbjct: 73 IYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPF 132
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD
Sbjct: 133 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 192
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQC 277
D+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQC
Sbjct: 193 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 252
Query: 278 LPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLE 309
LPDQL+D+TF+ L DD +TK WLAQL+KNL+
Sbjct: 253 LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ 284
>UNIPROTKB|F2Z5T0 [details] [associations]
symbol:RQCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0019221 "cytokine-mediated signaling pathway" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
InterPro:IPR016024 Pfam:PF04078 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0019221 GO:GO:0000932
GeneTree:ENSGT00390000001225 KO:K12606 OMA:CLPDQLR
InterPro:IPR007216 PANTHER:PTHR12262 EMBL:CU570813
RefSeq:XP_001925255.2 UniGene:Ssc.2149 ProteinModelPortal:F2Z5T0
SMR:F2Z5T0 PRIDE:F2Z5T0 Ensembl:ENSSSCT00000017634 GeneID:100153939
KEGG:ssc:100153939 Uniprot:F2Z5T0
Length = 299
Score = 1223 (435.6 bits), Expect = 1.9e-124, P = 1.9e-124
Identities = 238/272 (87%), Positives = 253/272 (93%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
AL V+REKIYQWI ELS PETRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+N
Sbjct: 13 ALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVN 72
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPF
Sbjct: 73 IYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPF 132
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD
Sbjct: 133 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 192
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQC 277
D+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQC
Sbjct: 193 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 252
Query: 278 LPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLE 309
LPDQL+D+TF+ L DD +TK WLAQL+KNL+
Sbjct: 253 LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ 284
>UNIPROTKB|Q4R347 [details] [associations]
symbol:RQCD1 "Cell differentiation protein RCD1 homolog"
species:9541 "Macaca fascicularis" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
GO:GO:0005634 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0006355 GO:GO:0006351 GO:GO:0000932 InterPro:IPR007216
PANTHER:PTHR12262 GO:GO:2000327 HOVERGEN:HBG056785 EMBL:AB179421
ProteinModelPortal:Q4R347 SMR:Q4R347 PRIDE:Q4R347 Uniprot:Q4R347
Length = 299
Score = 1223 (435.6 bits), Expect = 1.9e-124, P = 1.9e-124
Identities = 238/272 (87%), Positives = 253/272 (93%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
AL V+REKIYQWI ELS PETRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+N
Sbjct: 13 ALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVN 72
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPF
Sbjct: 73 IYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPF 132
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD
Sbjct: 133 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 192
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQC 277
D+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQC
Sbjct: 193 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 252
Query: 278 LPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLE 309
LPDQL+D+TF+ L DD +TK WLAQL+KNL+
Sbjct: 253 LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ 284
>MGI|MGI:1928902 [details] [associations]
symbol:Rqcd1 "rcd1 (required for cell differentiation)
homolog 1 (S. pombe)" species:10090 "Mus musculus" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0019221
"cytokine-mediated signaling pathway" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=ISO] [GO:0033147 "negative regulation
of intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO]
InterPro:IPR016024 MGI:MGI:1928902 Pfam:PF04078 GO:GO:0005634
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006355
GO:GO:0019221 GO:GO:0006351 GO:GO:0000932 eggNOG:COG5209
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327
CTD:9125 HOVERGEN:HBG056785 OrthoDB:EOG4W9J4C EMBL:AF221849
EMBL:AK005025 EMBL:BC050898 EMBL:BC051948 IPI:IPI00123602
RefSeq:NP_067358.1 UniGene:Mm.291708 ProteinModelPortal:Q9JKY0
SMR:Q9JKY0 DIP:DIP-34266N IntAct:Q9JKY0 STRING:Q9JKY0
PhosphoSite:Q9JKY0 PaxDb:Q9JKY0 PRIDE:Q9JKY0
Ensembl:ENSMUST00000087215 GeneID:58184 KEGG:mmu:58184
UCSC:uc007bmf.2 InParanoid:Q9JKY0 NextBio:314143 Bgee:Q9JKY0
Genevestigator:Q9JKY0 Uniprot:Q9JKY0
Length = 299
Score = 1223 (435.6 bits), Expect = 1.9e-124, P = 1.9e-124
Identities = 238/272 (87%), Positives = 253/272 (93%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
AL V+REKIYQWI ELS PETRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+N
Sbjct: 13 ALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVN 72
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPF
Sbjct: 73 IYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPF 132
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD
Sbjct: 133 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 192
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQC 277
D+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQC
Sbjct: 193 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 252
Query: 278 LPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLE 309
LPDQL+D+TF+ L DD +TK WLAQL+KNL+
Sbjct: 253 LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ 284
>RGD|1311495 [details] [associations]
symbol:Rqcd1 "Rcd1 required for cell differentiation1 homolog
(S. pombe)" species:10116 "Rattus norvegicus" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0019221 "cytokine-mediated signaling pathway"
evidence=IEA;ISO] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:2000327 "positive regulation
of ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISO;ISS] InterPro:IPR016024 RGD:1311495
Pfam:PF04078 GO:GO:0005634 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0006355 GO:GO:0019221 GO:GO:0006351
GO:GO:0000932 eggNOG:COG5209 GeneTree:ENSGT00390000001225
HOGENOM:HOG000192069 KO:K12606 InterPro:IPR007216 PANTHER:PTHR12262
GO:GO:2000327 CTD:9125 HOVERGEN:HBG056785 OrthoDB:EOG4W9J4C
EMBL:BC087134 IPI:IPI00211468 RefSeq:NP_001009357.1
UniGene:Rn.18033 ProteinModelPortal:Q5PQL2 SMR:Q5PQL2 IntAct:Q5PQL2
STRING:Q5PQL2 PRIDE:Q5PQL2 Ensembl:ENSRNOT00000021548 GeneID:301513
KEGG:rno:301513 UCSC:RGD:1311495 InParanoid:Q5PQL2 NextBio:648869
Genevestigator:Q5PQL2 Uniprot:Q5PQL2
Length = 299
Score = 1223 (435.6 bits), Expect = 1.9e-124, P = 1.9e-124
Identities = 238/272 (87%), Positives = 253/272 (93%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
AL V+REKIYQWI ELS PETRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+N
Sbjct: 13 ALAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVN 72
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPF
Sbjct: 73 IYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPF 132
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD
Sbjct: 133 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 192
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQC 277
D+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQC
Sbjct: 193 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 252
Query: 278 LPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLE 309
LPDQL+D+TF+ L DD +TK WLAQL+KNL+
Sbjct: 253 LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ 284
>UNIPROTKB|Q6IP65 [details] [associations]
symbol:rqcd1 "Cell differentiation protein RCD1 homolog"
species:8355 "Xenopus laevis" [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
GO:GO:0005634 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0006355 GO:GO:0006351 GO:GO:0000932 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327 CTD:9125
HOVERGEN:HBG056785 EMBL:BC072053 RefSeq:NP_001085150.1
UniGene:Xl.46465 ProteinModelPortal:Q6IP65 SMR:Q6IP65 GeneID:432229
KEGG:xla:432229 Xenbase:XB-GENE-1001088 Uniprot:Q6IP65
Length = 299
Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
Identities = 237/272 (87%), Positives = 253/272 (93%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
AL V+REKIYQWI ELS P+TRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+N
Sbjct: 13 ALAQVDREKIYQWINELSSPDTRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVN 72
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPF
Sbjct: 73 IYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPF 132
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD
Sbjct: 133 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 192
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQC 277
D+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQC
Sbjct: 193 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 252
Query: 278 LPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLE 309
LPDQL+D+TF+ L DD +TK WLAQL+KNL+
Sbjct: 253 LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ 284
>UNIPROTKB|Q6P819 [details] [associations]
symbol:rqcd1 "Cell differentiation protein RCD1 homolog"
species:8364 "Xenopus (Silurana) tropicalis" [GO:2000327 "positive
regulation of ligand-dependent nuclear receptor transcription
coactivator activity" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
GO:GO:0005634 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0006355 GO:GO:0006351 GO:GO:0000932 eggNOG:COG5209
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327 CTD:9125
HOVERGEN:HBG056785 OrthoDB:EOG4W9J4C EMBL:CR760361 EMBL:BC061412
RefSeq:NP_989024.1 UniGene:Str.7709 ProteinModelPortal:Q6P819
SMR:Q6P819 STRING:Q6P819 Ensembl:ENSXETT00000032762 GeneID:394620
KEGG:xtr:394620 Xenbase:XB-GENE-1001082 InParanoid:Q6P819
OMA:QLYANIC Bgee:Q6P819 Uniprot:Q6P819
Length = 299
Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
Identities = 237/272 (87%), Positives = 253/272 (93%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
AL V+REKIYQWI ELS P+TRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+N
Sbjct: 13 ALAQVDREKIYQWINELSSPDTRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVN 72
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPF
Sbjct: 73 IYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPF 132
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD
Sbjct: 133 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 192
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQC 277
D+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQC
Sbjct: 193 DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 252
Query: 278 LPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLE 309
LPDQL+D+TF+ L DD +TK WLAQL+KNL+
Sbjct: 253 LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ 284
>UNIPROTKB|Q92600 [details] [associations]
symbol:RQCD1 "Cell differentiation protein RCD1 homolog"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0019221
"cytokine-mediated signaling pathway" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=IDA]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=IMP] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0007548 "sex differentiation" evidence=TAS]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR016024
Pfam:PF04078 GO:GO:0005829 GO:GO:0005634 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006355 EMBL:CH471063
GO:GO:0019221 GO:GO:0006351 GO:GO:0000932 GO:GO:0007548
GO:GO:0000289 eggNOG:COG5209 HOGENOM:HOG000192069 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327 CTD:9125
HOVERGEN:HBG056785 OrthoDB:EOG4W9J4C EMBL:D87957 EMBL:BC007102
EMBL:BC137455 EMBL:BC137456 IPI:IPI00023101 RefSeq:NP_001258564.1
RefSeq:NP_005435.1 UniGene:Hs.148767 PDB:2FV2 PDBsum:2FV2
ProteinModelPortal:Q92600 SMR:Q92600 DIP:DIP-46840N IntAct:Q92600
MINT:MINT-1162783 STRING:Q92600 PhosphoSite:Q92600 DMDM:74716599
PaxDb:Q92600 PRIDE:Q92600 DNASU:9125 Ensembl:ENST00000273064
Ensembl:ENST00000542068 GeneID:9125 KEGG:hsa:9125 UCSC:uc010zkh.2
GeneCards:GC02P219433 HGNC:HGNC:10445 HPA:HPA046622 MIM:612054
neXtProt:NX_Q92600 PharmGKB:PA34859 InParanoid:Q92600
PhylomeDB:Q92600 ChiTaRS:RQCD1 EvolutionaryTrace:Q92600
GenomeRNAi:9125 NextBio:34205 ArrayExpress:Q92600 Bgee:Q92600
CleanEx:HS_RQCD1 Genevestigator:Q92600 Uniprot:Q92600
Length = 299
Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
Identities = 237/271 (87%), Positives = 252/271 (92%)
Query: 39 LLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINI 98
L V+REKIYQWI ELS PETRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+NI
Sbjct: 14 LAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNI 73
Query: 99 YPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFE 158
YP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPFE
Sbjct: 74 YPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFE 133
Query: 159 YLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDD 218
YLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDD
Sbjct: 134 YLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDD 193
Query: 219 SGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCL 278
+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQCL
Sbjct: 194 TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 253
Query: 279 PDQLRDSTFSVCLNDDKSTKNWLAQLIKNLE 309
PDQL+D+TF+ L DD +TK WLAQL+KNL+
Sbjct: 254 PDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ 284
>UNIPROTKB|Q5R6Z6 [details] [associations]
symbol:RQCD1 "Cell differentiation protein RCD1 homolog"
species:9601 "Pongo abelii" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
GO:GO:0005634 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0006355 GO:GO:0019221 GO:GO:0006351 GO:GO:0000932
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327
CTD:9125 HOVERGEN:HBG056785 EMBL:CR859645 EMBL:CR860327
RefSeq:NP_001126453.1 UniGene:Pab.1164 ProteinModelPortal:Q5R6Z6
SMR:Q5R6Z6 PRIDE:Q5R6Z6 Ensembl:ENSPPYT00000015320 GeneID:100173439
KEGG:pon:100173439 InParanoid:Q5R6Z6 Uniprot:Q5R6Z6
Length = 299
Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
Identities = 237/271 (87%), Positives = 252/271 (92%)
Query: 39 LLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINI 98
L V+REKIYQWI ELS PETRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+NI
Sbjct: 14 LAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNI 73
Query: 99 YPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFE 158
YP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPFE
Sbjct: 74 YPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFE 133
Query: 159 YLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDD 218
YLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDD
Sbjct: 134 YLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDD 193
Query: 219 SGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCL 278
+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQCL
Sbjct: 194 TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 253
Query: 279 PDQLRDSTFSVCLNDDKSTKNWLAQLIKNLE 309
PDQL+D+TF+ L DD +TK WLAQL+KNL+
Sbjct: 254 PDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQ 284
>ZFIN|ZDB-GENE-030131-1558 [details] [associations]
symbol:rqcd1 "RCD1 required for cell
differentiation1 homolog (S. pombe)" species:7955 "Danio rerio"
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] Pfam:PF04078 ZFIN:ZDB-GENE-030131-1558 GO:GO:0005634
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006355 GO:GO:0006351
GO:GO:0000932 eggNOG:COG5209 GeneTree:ENSGT00390000001225
HOGENOM:HOG000192069 KO:K12606 OMA:CLPDQLR InterPro:IPR007216
PANTHER:PTHR12262 GO:GO:2000327 CTD:9125 HOVERGEN:HBG056785
OrthoDB:EOG4W9J4C EMBL:BX548072 EMBL:BC067547 IPI:IPI00500235
RefSeq:NP_999925.1 UniGene:Dr.75506 ProteinModelPortal:Q6NWL4
SMR:Q6NWL4 STRING:Q6NWL4 PRIDE:Q6NWL4 DNASU:406632
Ensembl:ENSDART00000047464 Ensembl:ENSDART00000143574 GeneID:406632
KEGG:dre:406632 InParanoid:Q6NWL4 NextBio:20818172 Bgee:Q6NWL4
Uniprot:Q6NWL4
Length = 298
Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
Identities = 235/271 (86%), Positives = 251/271 (92%)
Query: 39 LLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINI 98
L V+REKIYQWI ELS PETRENALLELSKKRE V DLAPMLWHS GTIAALLQEI+NI
Sbjct: 13 LAQVDREKIYQWINELSSPETRENALLELSKKRESVTDLAPMLWHSCGTIAALLQEIVNI 72
Query: 99 YPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFE 158
YP+INP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPFE
Sbjct: 73 YPSINPPTLTAHQSNRVCNALALLQCVASHVETRSAFLAAHIPLFLYPFLHTVSKTRPFE 132
Query: 159 YLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDD 218
YLRLTSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDD
Sbjct: 133 YLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDD 192
Query: 219 SGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCL 278
+GL+YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN+RAREALRQCL
Sbjct: 193 TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNSRAREALRQCL 252
Query: 279 PDQLRDSTFSVCLNDDKSTKNWLAQLIKNLE 309
PDQL+D+TF+ L DD +TK WLAQL+KNL+
Sbjct: 253 PDQLKDTTFAQVLKDDSTTKRWLAQLVKNLQ 283
>FB|FBgn0031047 [details] [associations]
symbol:Rcd-1 "Required for cell differentiation 1 ortholog"
species:7227 "Drosophila melanogaster" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
Pfam:PF04078 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AE014298
GO:GO:0030014 eggNOG:COG5209 GeneTree:ENSGT00390000001225 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262 EMBL:AY118785
RefSeq:NP_608335.1 RefSeq:NP_728284.1 UniGene:Dm.7239 SMR:Q7JVP2
IntAct:Q7JVP2 STRING:Q7JVP2 EnsemblMetazoa:FBtr0074743
EnsemblMetazoa:FBtr0074744 GeneID:32966 KEGG:dme:Dmel_CG14213
UCSC:CG14213-RA CTD:32966 FlyBase:FBgn0031047 InParanoid:Q7JVP2
OrthoDB:EOG4V9S69 ChiTaRS:Rcd-1 GenomeRNAi:32966 NextBio:781271
Uniprot:Q7JVP2
Length = 304
Score = 1121 (399.7 bits), Expect = 1.2e-113, P = 1.2e-113
Identities = 218/267 (81%), Positives = 239/267 (89%)
Query: 43 EREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTI 102
E+EK+YQWI EL+ P+TRE ALLELSKKRE DLAPMLW+SFGT ALLQEI+NIYP+I
Sbjct: 25 EQEKVYQWINELAHPDTRETALLELSKKRET--DLAPMLWNSFGTACALLQEIVNIYPSI 82
Query: 103 NPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRL 162
P TLTAHQSNRVCNALALLQCVASH ETR+ FL A IPL+LYPFL TTSKTRPFEYLRL
Sbjct: 83 TPPTLTAHQSNRVCNALALLQCVASHPETRTAFLQAQIPLYLYPFLSTTSKTRPFEYLRL 142
Query: 163 TSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLS 222
TSLGVIGALVKTDEQEVITFLLTTEI+PLCL IM+SGSELSKTVATFI+QKILLD+SGLS
Sbjct: 143 TSLGVIGALVKTDEQEVITFLLTTEIVPLCLSIMDSGSELSKTVATFIIQKILLDESGLS 202
Query: 223 YICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQL 282
YICQTY+RFSHVA+ LGKMVI L KD +RLLKHVVRCYLRLSDN RAR+AL QCLPDQL
Sbjct: 203 YICQTYERFSHVAITLGKMVIQLAKDPCARLLKHVVRCYLRLSDNTRARKALGQCLPDQL 262
Query: 283 RDSTFSVCLNDDKSTKNWLAQLIKNLE 309
RD TF++CL +DKSTK WL L+KNLE
Sbjct: 263 RDGTFALCLQEDKSTKQWLQMLLKNLE 289
>ASPGD|ASPL0000012996 [details] [associations]
symbol:AN3669 species:162425 "Emericella nidulans"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0010515 "negative
regulation of induction of conjugation with cellular fusion"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] Pfam:PF04078 EMBL:BN001302 EMBL:AACD01000061
GO:GO:0030015 eggNOG:COG5209 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR OrthoDB:EOG49CTHV InterPro:IPR007216 PANTHER:PTHR12262
RefSeq:XP_661273.1 ProteinModelPortal:Q5B711 SMR:Q5B711
STRING:Q5B711 EnsemblFungi:CADANIAT00005063 GeneID:2873084
KEGG:ani:AN3669.2 Uniprot:Q5B711
Length = 396
Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
Identities = 194/273 (71%), Positives = 225/273 (82%)
Query: 43 EREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTI 102
E K++ W+ EL RE AL+ELSKKRE VP+LA ++WHSFG + ALLQEII++YP +
Sbjct: 118 ENRKVFIWVAELLDSNRREAALMELSKKREQVPELALVIWHSFGVMTALLQEIISVYPLL 177
Query: 103 NPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRL 162
NP+ LTA SNRVCNALALLQCVASH ETR+LFL AHIPLFLYPFL+TTSK+RPFEYLRL
Sbjct: 178 NPSQLTAAASNRVCNALALLQCVASHNETRTLFLNAHIPLFLYPFLNTTSKSRPFEYLRL 237
Query: 163 TSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLS 222
TSLGVIGALVK D +VI FLLTTEIIPLCLRIME+GSELSKTVA FI+QKILLDD GL+
Sbjct: 238 TSLGVIGALVKNDSSDVINFLLTTEIIPLCLRIMETGSELSKTVAIFIVQKILLDDIGLA 297
Query: 223 YICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQL 282
YIC TY+RF V +L MV L + Q+ RLLKHVVRC+LRLSDN+RAREALRQCLP+ L
Sbjct: 298 YICATYERFYAVGTVLSNMVTQLVEQQTVRLLKHVVRCFLRLSDNSRAREALRQCLPEPL 357
Query: 283 RDSTFSVCLNDDKSTKNWLAQLIKNL-ESVSAG 314
RD+TFS L DD +TK LAQL+ NL ++VS G
Sbjct: 358 RDATFSSVLRDDAATKRCLAQLLINLSDNVSDG 390
>WB|WBGene00016139 [details] [associations]
symbol:ntl-9 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0031581 "hemidesmosome assembly" evidence=IGI]
Pfam:PF04078 GO:GO:0009792 eggNOG:COG5209
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:0031581
EMBL:FO080680 PIR:F88445 RefSeq:NP_498048.2
ProteinModelPortal:Q18224 SMR:Q18224 STRING:Q18224 PaxDb:Q18224
EnsemblMetazoa:C26E6.3 GeneID:175669 KEGG:cel:CELE_C26E6.3
UCSC:C26E6.3 CTD:175669 WormBase:C26E6.3 InParanoid:Q18224
NextBio:889142 Uniprot:Q18224
Length = 321
Score = 859 (307.4 bits), Expect = 6.0e-97, Sum P(2) = 6.0e-97
Identities = 171/234 (73%), Positives = 196/234 (83%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
A L + ++I QWI++L P RE ALLELSKKR+ VPDL LWHSFGT++ALLQE++
Sbjct: 21 ANLDINTDEIMQWIIDLRDPPKREAALLELSKKRDSVPDLPIWLWHSFGTMSALLQEVVA 80
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP I PA LTA QSNRVCNALAL+QCVASH++TR FL AHIPL+LYPFLHTT +R F
Sbjct: 81 IYPAIMPANLTAAQSNRVCNALALMQCVASHRDTRGPFLHAHIPLYLYPFLHTTKVSRSF 140
Query: 158 EYLRLTSLGVIGALVKTDEQE----VITFLLTTEIIPLCLRIMESGSELSKTVATFILQK 213
EYLRLTSLGVIGALVKTD++E VI FLL+TEIIPLCLRIME G+ELSKTVATFILQK
Sbjct: 141 EYLRLTSLGVIGALVKTDDKEQLLIVINFLLSTEIIPLCLRIMEQGTELSKTVATFILQK 200
Query: 214 ILLDDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDN 267
ILLDD+GL YICQTY+RFSHV +ILGKMV+ L ++ S RLLKHVVRCY RLSDN
Sbjct: 201 ILLDDTGLLYICQTYERFSHVVLILGKMVMKLTREPSVRLLKHVVRCYSRLSDN 254
Score = 124 (48.7 bits), Expect = 6.0e-97, Sum P(2) = 6.0e-97
Identities = 25/42 (59%), Positives = 29/42 (69%)
Query: 269 RAREALRQCLPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLES 310
RA AL+QCLPDQL+D TF L +D ST NWL QL+ L S
Sbjct: 276 RASLALKQCLPDQLKDLTFKSLLKEDPSTMNWLRQLLTTLGS 317
>UNIPROTKB|G4NB38 [details] [associations]
symbol:MGG_00632 "Cell differentiation protein rcd1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0007548 "sex
differentiation" evidence=ISS] [GO:0030014 "CCR4-NOT complex"
evidence=ISS] [GO:0030154 "cell differentiation" evidence=ISS]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=ISS] [GO:0031142 "induction of conjugation upon nitrogen
starvation" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 SUPFAM:SSF48371
EMBL:CM001235 GO:GO:0006352 GO:GO:0003723 GO:GO:0000122
GO:GO:0006402 GO:GO:0007548 GO:GO:0031142 GO:GO:0030014
GO:GO:0030015 KO:K12606 InterPro:IPR007216 PANTHER:PTHR12262
GO:GO:0006354 RefSeq:XP_003718384.1 EnsemblFungi:MGG_00632T0
GeneID:2674803 KEGG:mgr:MGG_00632 Uniprot:G4NB38
Length = 364
Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
Identities = 190/266 (71%), Positives = 219/266 (82%)
Query: 43 EREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTI 102
+ + +I +L TRE ALLELSKKRE VP+LA +LWHSFG + +LLQEII++Y +
Sbjct: 85 DNRRTLAYIADLLNENTREAALLELSKKREQVPELALILWHSFGVMTSLLQEIISVYTLL 144
Query: 103 NPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRL 162
NP+ LTA SNRVCNALALLQCVASH ETR+LFL AHIPL+LYPFL+TTSK+RPFEYLRL
Sbjct: 145 NPSQLTAAASNRVCNALALLQCVASHNETRTLFLNAHIPLYLYPFLNTTSKSRPFEYLRL 204
Query: 163 TSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLS 222
TSLGVIGALVK D EVI FLLTTEIIPLCLRIME+GSELSKTVA FI+QKILLDD+GL+
Sbjct: 205 TSLGVIGALVKNDSSEVINFLLTTEIIPLCLRIMETGSELSKTVAIFIVQKILLDDNGLN 264
Query: 223 YICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQL 282
YIC TY+RF V +L MV L + Q++RLLKHVVRC+LRLSDNARAREALRQCLPD L
Sbjct: 265 YICATYERFYAVGTVLSNMVAQLVEQQTARLLKHVVRCFLRLSDNARAREALRQCLPDPL 324
Query: 283 RDSTFSVCLNDDKSTKNWLAQLIKNL 308
RD+TFS L DD +TK L QL+ NL
Sbjct: 325 RDATFSSVLRDDAATKRCLTQLLINL 350
>TAIR|locus:2091936 [details] [associations]
symbol:AT3G20800 "AT3G20800" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0007275 "multicellular organismal
development" evidence=ISS] Pfam:PF04078 EMBL:CP002686 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262
ProtClustDB:CLSN2685062 UniGene:At.48685 UniGene:At.66456
EMBL:AY091082 EMBL:AY122953 IPI:IPI00525457 RefSeq:NP_188716.1
ProteinModelPortal:Q8RWV5 SMR:Q8RWV5 PRIDE:Q8RWV5 DNASU:821628
EnsemblPlants:AT3G20800.1 GeneID:821628 KEGG:ath:AT3G20800
TAIR:At3g20800 InParanoid:Q8RWV5 PhylomeDB:Q8RWV5
ArrayExpress:Q8RWV5 Genevestigator:Q8RWV5 Uniprot:Q8RWV5
Length = 316
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 184/260 (70%), Positives = 213/260 (81%)
Query: 49 QWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATLT 108
Q +L+LS PE RENALLELSKKRE+ DLAP+LW+SFGTIAALLQEI++IY + P LT
Sbjct: 40 QLVLDLSNPELRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYSVLAPPNLT 99
Query: 109 AHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVI 168
QSNRVCN+LALLQCVASH +TR LFL AHIPL+LYPFL+TTSK+RPFEYLRLTSLGVI
Sbjct: 100 PAQSNRVCNSLALLQCVASHSDTRMLFLKAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVI 159
Query: 169 GALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLSYICQTY 228
GALVK D+ EVI+FLL+TEIIPLCLR ME GSELSKTVATFI+QKILLDD G+ YIC T
Sbjct: 160 GALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGMDYICTTA 219
Query: 229 DRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQLRDSTFS 288
+RF V +LG MV SL + S RLLKH++RCYLRLSDN RA AL CLPD LRD +FS
Sbjct: 220 ERFFAVGRVLGNMVQSLVEQPSPRLLKHIIRCYLRLSDNPRACAALASCLPDSLRDGSFS 279
Query: 289 VCLNDDKSTKNWLAQLIKNL 308
CL +D + + WL QL+ N+
Sbjct: 280 NCLREDPTARRWLQQLVHNV 299
>TAIR|locus:2182315 [details] [associations]
symbol:AT5G12980 "AT5G12980" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0007275 "multicellular organismal
development" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
EMBL:CP002688 SUPFAM:SSF48371 EMBL:AL353013 HOGENOM:HOG000192069
KO:K12606 InterPro:IPR007216 PANTHER:PTHR12262
ProtClustDB:CLSN2685062 EMBL:AY161167 IPI:IPI00546387 PIR:T49912
RefSeq:NP_196802.1 UniGene:At.19618 UniGene:At.49791
ProteinModelPortal:Q9LXU1 SMR:Q9LXU1 PRIDE:Q9LXU1
EnsemblPlants:AT5G12980.1 GeneID:831138 KEGG:ath:AT5G12980
TAIR:At5g12980 InParanoid:Q9LXU1 OMA:RTMENGS PhylomeDB:Q9LXU1
Genevestigator:Q9LXU1 Uniprot:Q9LXU1
Length = 311
Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
Identities = 180/260 (69%), Positives = 211/260 (81%)
Query: 49 QWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPATLT 108
Q IL+LS PE RENAL ELSKKRE+ DLAP+LWHS GTI ALLQEII +YP ++P T+T
Sbjct: 36 QLILDLSNPELRENALHELSKKREIFQDLAPLLWHSVGTIPALLQEIIAVYPALSPPTMT 95
Query: 109 AHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVI 168
QSNRVCNALALLQCVASH +TR LFL AH+PL+LY FL+T+SK+RPFEYLRLTSLGVI
Sbjct: 96 PAQSNRVCNALALLQCVASHTDTRMLFLKAHLPLYLYAFLNTSSKSRPFEYLRLTSLGVI 155
Query: 169 GALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLSYICQTY 228
GALVK D+ EVI FLL TEI+PLCLR ME+GSELSKTVATFI+QK+LLDD GL Y+C T
Sbjct: 156 GALVKVDDTEVIRFLLQTEIVPLCLRTMENGSELSKTVATFIVQKVLLDDVGLEYMCTTA 215
Query: 229 DRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQLRDSTFS 288
+RF + +LG MV SL + S+RLLKH++RCYLRL+DN RA +AL CLPD LRD+TFS
Sbjct: 216 ERFFALGRVLGNMVTSLAEGPSARLLKHIIRCYLRLTDNPRACDALGSCLPDLLRDATFS 275
Query: 289 VCLNDDKSTKNWLAQLIKNL 308
CL DD WL QL+ N+
Sbjct: 276 GCLYDDPPAMQWLQQLLHNV 295
>POMBASE|SPAC29B12.06c [details] [associations]
symbol:rcd1 "RNA-binding protein, CCR4-NOT complex
subunit Rcd1" species:4896 "Schizosaccharomyces pombe" [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0003723 "RNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=IC] [GO:0006402 "mRNA catabolic process" evidence=IC]
[GO:0007548 "sex differentiation" evidence=IEA] [GO:0010515
"negative regulation of induction of conjugation with cellular
fusion" evidence=IMP] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0031138
"negative regulation of conjugation with cellular fusion"
evidence=IGI] InterPro:IPR016024 PomBase:SPAC29B12.06c Pfam:PF04078
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0003723 GO:GO:0000122 GO:GO:0006402
GO:GO:0007548 GO:GO:0030014 eggNOG:COG5209 HOGENOM:HOG000192069
KO:K12606 OMA:CLPDQLR OrthoDB:EOG49CTHV InterPro:IPR007216
PANTHER:PTHR12262 GO:GO:0006354 GO:GO:0010515 EMBL:D87956
PIR:T43247 RefSeq:NP_594984.1 ProteinModelPortal:Q92368 SMR:Q92368
STRING:Q92368 EnsemblFungi:SPAC29B12.06c.1 GeneID:2542094
KEGG:spo:SPAC29B12.06c NextBio:20803167 Uniprot:Q92368
Length = 283
Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
Identities = 181/266 (68%), Positives = 212/266 (79%)
Query: 47 IYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINPAT 106
+Y+WI++L +RE AL+ELS+KRE DLA +LWHS+G + ALLQEII++YP +NP T
Sbjct: 14 VYEWIIQLVSGTSREQALVELSRKREQYEDLALILWHSYGVMTALLQEIISVYPLLNPPT 73
Query: 107 LTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLG 166
LT SNRVCNALALLQC+ASH ETR FL AHI LFLYPFL+T SK++PFEYLRLTSLG
Sbjct: 74 LTGPTSNRVCNALALLQCIASHPETRIHFLNAHITLFLYPFLNTLSKSKPFEYLRLTSLG 133
Query: 167 VIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLSYICQ 226
VIGALVK D EVI FLL+TEIIPLCLRIME+GSELSKTVA FI+QK L DD GL YICQ
Sbjct: 134 VIGALVKNDSPEVINFLLSTEIIPLCLRIMENGSELSKTVAIFIVQKFLCDDVGLQYICQ 193
Query: 227 TYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQLRDST 286
TY+RF VA +L MV+ L + RLLKHV+RCYLRLSDN RAREALR CLP+ LRD+T
Sbjct: 194 TYERFYAVASVLNNMVMQLVDSFAFRLLKHVIRCYLRLSDNPRAREALRHCLPEPLRDAT 253
Query: 287 FSVCLNDDKSTKNWLAQLIKNLESVS 312
F+ L DD +TK LAQL+ NL V+
Sbjct: 254 FAQVLKDDHNTKKCLAQLLINLSDVA 279
>GENEDB_PFALCIPARUM|PFE0375w [details] [associations]
symbol:PFE0375w "cell differentiation protein
rcd1, putative" species:5833 "Plasmodium falciparum" [GO:0030154
"cell differentiation" evidence=ISS] InterPro:IPR016024
Pfam:PF04078 GO:GO:0030154 SUPFAM:SSF48371 EMBL:AL844504 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 OMA:EININIP
RefSeq:XP_001351634.1 ProteinModelPortal:Q8I427 SMR:Q8I427
MINT:MINT-1662755 EnsemblProtists:PFE0375w:mRNA GeneID:812876
KEGG:pfa:PFE0375w EuPathDB:PlasmoDB:PF3D7_0507600 Uniprot:Q8I427
Length = 652
Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
Identities = 180/270 (66%), Positives = 214/270 (79%)
Query: 43 EREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTI 102
E++K+YQ + +L E RENALLELS+KRE D+AP+LW+SFGTI LLQEI++IYP +
Sbjct: 225 EKKKVYQLVYDLCFSEKRENALLELSRKRETYHDIAPVLWNSFGTITTLLQEIVSIYPQL 284
Query: 103 NPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRL 162
+P LT SNRVCN+LALLQCVASH ET+ FL AHIPLFLYPFL+ SK RPFEYLRL
Sbjct: 285 SPPLLTTSSSNRVCNSLALLQCVASHPETKQHFLNAHIPLFLYPFLNAESKNRPFEYLRL 344
Query: 163 TSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLS 222
TSLGVIGALVK D EVI FLL TEIIPLCLRIME+GSELSKTVATFI+QKIL+D+ GL+
Sbjct: 345 TSLGVIGALVKVDNPEVINFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILIDELGLN 404
Query: 223 YICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQL 282
YIC T +RF V+ +L MV SL ++ SSRLLKH+VRCYLRLS+NARA EAL+ CLP+ L
Sbjct: 405 YICATPERFYAVSTVLANMVNSLVENPSSRLLKHIVRCYLRLSENARALEALKYCLPEPL 464
Query: 283 RD--STFSVCLNDDKSTKNWLAQLIKNLES 310
R TF CL +D TK WL QL+ N+ +
Sbjct: 465 RHVHKTFLPCLKEDPFTKKWLLQLLYNINN 494
>UNIPROTKB|Q8I427 [details] [associations]
symbol:PFE0375w "Cell differentiation protein rcd1,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0030154
"cell differentiation" evidence=ISS] InterPro:IPR016024
Pfam:PF04078 GO:GO:0030154 SUPFAM:SSF48371 EMBL:AL844504 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 OMA:EININIP
RefSeq:XP_001351634.1 ProteinModelPortal:Q8I427 SMR:Q8I427
MINT:MINT-1662755 EnsemblProtists:PFE0375w:mRNA GeneID:812876
KEGG:pfa:PFE0375w EuPathDB:PlasmoDB:PF3D7_0507600 Uniprot:Q8I427
Length = 652
Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
Identities = 180/270 (66%), Positives = 214/270 (79%)
Query: 43 EREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTI 102
E++K+YQ + +L E RENALLELS+KRE D+AP+LW+SFGTI LLQEI++IYP +
Sbjct: 225 EKKKVYQLVYDLCFSEKRENALLELSRKRETYHDIAPVLWNSFGTITTLLQEIVSIYPQL 284
Query: 103 NPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRL 162
+P LT SNRVCN+LALLQCVASH ET+ FL AHIPLFLYPFL+ SK RPFEYLRL
Sbjct: 285 SPPLLTTSSSNRVCNSLALLQCVASHPETKQHFLNAHIPLFLYPFLNAESKNRPFEYLRL 344
Query: 163 TSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLS 222
TSLGVIGALVK D EVI FLL TEIIPLCLRIME+GSELSKTVATFI+QKIL+D+ GL+
Sbjct: 345 TSLGVIGALVKVDNPEVINFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILIDELGLN 404
Query: 223 YICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQL 282
YIC T +RF V+ +L MV SL ++ SSRLLKH+VRCYLRLS+NARA EAL+ CLP+ L
Sbjct: 405 YICATPERFYAVSTVLANMVNSLVENPSSRLLKHIVRCYLRLSENARALEALKYCLPEPL 464
Query: 283 RD--STFSVCLNDDKSTKNWLAQLIKNLES 310
R TF CL +D TK WL QL+ N+ +
Sbjct: 465 RHVHKTFLPCLKEDPFTKKWLLQLLYNINN 494
>DICTYBASE|DDB_G0269778 [details] [associations]
symbol:DDB_G0269778 "cell differentiation family,
Rcd1-like protein" species:44689 "Dictyostelium discoideum"
[GO:0003674 "molecular_function" evidence=ND] [GO:0030014 "CCR4-NOT
complex" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS]
dictyBase:DDB_G0269778 Pfam:PF04078 EMBL:AAFI02000005
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006357 GO:GO:0030014
eggNOG:COG5209 KO:K12606 OMA:CLPDQLR InterPro:IPR007216
PANTHER:PTHR12262 RefSeq:XP_646272.1 ProteinModelPortal:Q55D59
SMR:Q55D59 STRING:Q55D59 EnsemblProtists:DDB0216421 GeneID:8617228
KEGG:ddi:DDB_G0269778 InParanoid:Q55D59 Uniprot:Q55D59
Length = 360
Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
Identities = 173/270 (64%), Positives = 217/270 (80%)
Query: 41 PVEREK---IYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
P+++E IY + +L+IPE RENAL++LSKKRE VPDLAP+L +SFGTIAALLQEI++
Sbjct: 42 PLDKEALQHIYSLVKDLTIPEKRENALVDLSKKRETVPDLAPILLNSFGTIAALLQEIVS 101
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
IYP ++P L A SNRVCNALALLQCVASH +TR+ FL +HIPLFLYPFL+T+SK RPF
Sbjct: 102 IYPLLSPPKLKALPSNRVCNALALLQCVASHPDTRTYFLHSHIPLFLYPFLNTSSKNRPF 161
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVK D+ VI FLL+TEI+ LC+RIME+GSELSKTVATFI+QKILLD
Sbjct: 162 EYLRLTSLGVIGALVKVDDSTVIDFLLSTEIMTLCVRIMETGSELSKTVATFIVQKILLD 221
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQC 277
D GL+YIC + +R +L M+ L S RLLKHV+RCYLRL+DN +++E+LRQ
Sbjct: 222 DMGLNYICVSNERIMAFLSVLANMIQQLIDQSSPRLLKHVIRCYLRLTDNPKSKESLRQF 281
Query: 278 LPDQLRDSTFSVCLNDDK--STKNWLAQLI 305
LP+ L++ TF+ L D+K +TK WL+QL+
Sbjct: 282 LPESLKNGTFNSHLKDEKDFTTKRWLSQLL 311
>CGD|CAL0003168 [details] [associations]
symbol:orf19.7198 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030015
"CCR4-NOT core complex" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0010515 "negative regulation of induction of conjugation with
cellular fusion" evidence=IEA] CGD:CAL0003168 Pfam:PF04078
eggNOG:COG5209 KO:K12606 InterPro:IPR007216 PANTHER:PTHR12262
EMBL:AACQ01000089 RefSeq:XP_715246.1 RefSeq:XP_888989.1
ProteinModelPortal:Q5A097 SMR:Q5A097 STRING:Q5A097 GeneID:3643146
GeneID:3703916 KEGG:cal:CaO19.7198 KEGG:cal:CaO19_7198
Uniprot:Q5A097
Length = 331
Score = 682 (245.1 bits), Expect = 3.1e-85, Sum P(2) = 3.1e-85
Identities = 136/201 (67%), Positives = 159/201 (79%)
Query: 45 EKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINP 104
E+IYQWI EL RE ALLEL KKRE DLA +LW+SFG I LL+EII++YP +NP
Sbjct: 30 EQIYQWISELVTGNNRERALLELGKKREQYDDLALVLWNSFGVITVLLEEIISVYPYLNP 89
Query: 105 ATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTS 164
L+A SNRVCNALALLQCVAS+ +TR+LFL A++PL+LYPFL T ++ R FEYLRLTS
Sbjct: 90 PNLSASISNRVCNALALLQCVASNVQTRTLFLNANLPLYLYPFLSTNARQRSFEYLRLTS 149
Query: 165 LGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLSYI 224
LGVIGALVK D EVI FLLTTEI+PLCL IME SELSKTVA FILQKILLDD GL+Y+
Sbjct: 150 LGVIGALVKNDTPEVINFLLTTEIVPLCLNIMEISSELSKTVAIFILQKILLDDQGLAYV 209
Query: 225 CQTYDRFSHVAMILGKMVISL 245
C T++RF VA +L KM+ L
Sbjct: 210 CTTFERFHTVASVLSKMIDQL 230
Score = 190 (71.9 bits), Expect = 3.1e-85, Sum P(2) = 3.1e-85
Identities = 37/61 (60%), Positives = 45/61 (73%)
Query: 248 DQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQLRDSTFSVCLNDDKSTKNWLAQLIKN 307
+ S RLLKHVVRCY+RLSDN AR+AL LP+ LRD TFS L DD +TK L+QL+ N
Sbjct: 267 NSSGRLLKHVVRCYMRLSDNLEARKALANILPEPLRDGTFSTILQDDLATKRCLSQLLSN 326
Query: 308 L 308
+
Sbjct: 327 I 327
>UNIPROTKB|Q5A097 [details] [associations]
symbol:CAF40 "Potential CCR4-NOT complex associated factor
Caf40p" species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] CGD:CAL0003168 Pfam:PF04078
eggNOG:COG5209 KO:K12606 InterPro:IPR007216 PANTHER:PTHR12262
EMBL:AACQ01000089 RefSeq:XP_715246.1 RefSeq:XP_888989.1
ProteinModelPortal:Q5A097 SMR:Q5A097 STRING:Q5A097 GeneID:3643146
GeneID:3703916 KEGG:cal:CaO19.7198 KEGG:cal:CaO19_7198
Uniprot:Q5A097
Length = 331
Score = 682 (245.1 bits), Expect = 3.1e-85, Sum P(2) = 3.1e-85
Identities = 136/201 (67%), Positives = 159/201 (79%)
Query: 45 EKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTINP 104
E+IYQWI EL RE ALLEL KKRE DLA +LW+SFG I LL+EII++YP +NP
Sbjct: 30 EQIYQWISELVTGNNRERALLELGKKREQYDDLALVLWNSFGVITVLLEEIISVYPYLNP 89
Query: 105 ATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTS 164
L+A SNRVCNALALLQCVAS+ +TR+LFL A++PL+LYPFL T ++ R FEYLRLTS
Sbjct: 90 PNLSASISNRVCNALALLQCVASNVQTRTLFLNANLPLYLYPFLSTNARQRSFEYLRLTS 149
Query: 165 LGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLSYI 224
LGVIGALVK D EVI FLLTTEI+PLCL IME SELSKTVA FILQKILLDD GL+Y+
Sbjct: 150 LGVIGALVKNDTPEVINFLLTTEIVPLCLNIMEISSELSKTVAIFILQKILLDDQGLAYV 209
Query: 225 CQTYDRFSHVAMILGKMVISL 245
C T++RF VA +L KM+ L
Sbjct: 210 CTTFERFHTVASVLSKMIDQL 230
Score = 190 (71.9 bits), Expect = 3.1e-85, Sum P(2) = 3.1e-85
Identities = 37/61 (60%), Positives = 45/61 (73%)
Query: 248 DQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQLRDSTFSVCLNDDKSTKNWLAQLIKN 307
+ S RLLKHVVRCY+RLSDN AR+AL LP+ LRD TFS L DD +TK L+QL+ N
Sbjct: 267 NSSGRLLKHVVRCYMRLSDNLEARKALANILPEPLRDGTFSTILQDDLATKRCLSQLLSN 326
Query: 308 L 308
+
Sbjct: 327 I 327
>FB|FBgn0032089 [details] [associations]
symbol:Rcd-1r "Rcd-1 related" species:7227 "Drosophila
melanogaster" [GO:0003674 "molecular_function" evidence=ND]
[GO:0007283 "spermatogenesis" evidence=IEP;IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0022414 "reproductive process"
evidence=IMP] Pfam:PF04078 EMBL:AE014134 GO:GO:0007283
eggNOG:COG5209 GeneTree:ENSGT00390000001225 InterPro:IPR007216
PANTHER:PTHR12262 EMBL:AY075185 EMBL:HM358897 EMBL:HM358903
EMBL:HM358906 EMBL:HM358910 RefSeq:NP_609269.1 UniGene:Dm.19803
SMR:Q9VLF2 IntAct:Q9VLF2 MINT:MINT-791139 STRING:Q9VLF2
EnsemblMetazoa:FBtr0079779 GeneID:34229 KEGG:dme:Dmel_CG9573
UCSC:CG9573-RA CTD:34229 FlyBase:FBgn0032089 InParanoid:Q9VLF2
OrthoDB:EOG4GTHVP GenomeRNAi:34229 NextBio:787499 Uniprot:Q9VLF2
Length = 290
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 165/268 (61%), Positives = 198/268 (73%)
Query: 43 EREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTI 102
EREK+YQ I+EL+ P TRE ALLELSK DLAPMLW S GT LLQEI+NIYP I
Sbjct: 16 EREKVYQLIIELAYPATRETALLELSKN--TYADLAPMLWKSVGTTCTLLQEIVNIYPII 73
Query: 103 NPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRL 162
L A+QSNRVC AL LLQCVASH ETR FL IP++LYPFL TT K+RPFE LRL
Sbjct: 74 TTPVLKANQSNRVCYALTLLQCVASHPETRPAFLRDQIPMYLYPFLSTTFKSRPFEQLRL 133
Query: 163 TSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLS 222
T+LGVI AL +T + EV+ FL+ +E++P CL M GS+L+K AT IL+KILLD+ GL+
Sbjct: 134 TTLGVINALAETGDTEVLIFLIWSEVVPHCLTNMVRGSKLTKIAATSILEKILLDEMGLT 193
Query: 223 YICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQL 282
YIC+ +DRFS VA+ LGKMVI + K R+LKHVVRCYL L++NARAR ALR CLPD L
Sbjct: 194 YICENHDRFSQVAITLGKMVIHMLKFPCLRVLKHVVRCYLLLTENARARSALRVCLPDLL 253
Query: 283 RDSTFSVCLNDDKSTKNWLAQLIKNLES 310
RD TF+ + D TK WL L+KNL++
Sbjct: 254 RDGTFTSLVQHDTCTKQWLQMLLKNLQT 281
>SGD|S000005232 [details] [associations]
symbol:CAF40 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA;IPI] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] [GO:0030015 "CCR4-NOT core complex"
evidence=IPI] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR016024 SGD:S000005232 Pfam:PF04078 GO:GO:0005634
GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:BK006947 GO:GO:0006351 GO:GO:0032968 GO:GO:0030015 EMBL:Z71564
PIR:S63262 RefSeq:NP_014111.1 ProteinModelPortal:P53829 SMR:P53829
DIP:DIP-1995N IntAct:P53829 MINT:MINT-393536 STRING:P53829
PaxDb:P53829 PeptideAtlas:P53829 EnsemblFungi:YNL288W GeneID:855428
KEGG:sce:YNL288W CYGD:YNL288w eggNOG:COG5209
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR OrthoDB:EOG49CTHV NextBio:979301 Genevestigator:P53829
GermOnline:YNL288W InterPro:IPR007216 PANTHER:PTHR12262
Uniprot:P53829
Length = 373
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 165/272 (60%), Positives = 199/272 (73%)
Query: 38 ALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIIN 97
A+ ++ +Y WI +L+ +E ALLEL +KRE DLA +LW SFG + +LL EII+
Sbjct: 97 AVHALDDPNVYHWICQLTYGPQKEQALLELGRKREQFDDLAVVLWSSFGVMTSLLNEIIS 156
Query: 98 IYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
+YP + P L+ + SNRVCNAL LLQCVASH ET+ LFL AHIPLFL+PFL+TTS+ R F
Sbjct: 157 VYPMLQPQMLSNNLSNRVCNALVLLQCVASHPETKHLFLQAHIPLFLFPFLNTTSRQRTF 216
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLTSLGVIGALVK D Q+VITFLL T+I+PLCLRIMES SELSKTVA FILQKILLD
Sbjct: 217 EYLRLTSLGVIGALVKNDSQDVITFLLRTDIVPLCLRIMESSSELSKTVAIFILQKILLD 276
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLE-KDQSSRLLKHVVRCYLRLSDNARAREALRQ 276
D GL YIC T +RF V +L MV L RLLKH++RCYLRLSD+ AR L+
Sbjct: 277 DVGLQYICATLERFYAVTNVLKDMVEHLTVSTPPGRLLKHIIRCYLRLSDDLEARRLLKI 336
Query: 277 CLPDQLRDSTFSVCLNDDKSTKNWLAQLIKNL 308
LP +LRD+TF+ L DD +K LAQL+ L
Sbjct: 337 VLPAKLRDNTFTEVLRDDVGSKRCLAQLLLTL 368
>DICTYBASE|DDB_G0275289 [details] [associations]
symbol:DDB_G0275289 "cell differentiation family,
Rcd1-like protein" species:44689 "Dictyostelium discoideum"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR016024
dictyBase:DDB_G0275289 Pfam:PF04078 GO:GO:0005634 SUPFAM:SSF48371
GO:GO:0006357 EMBL:AAFI02000013 eggNOG:COG5209 InterPro:IPR007216
PANTHER:PTHR12262 RefSeq:XP_643823.1 ProteinModelPortal:Q553Y8
EnsemblProtists:DDB0220000 GeneID:8619870 KEGG:ddi:DDB_G0275289
InParanoid:Q553Y8 OMA:EININIP Uniprot:Q553Y8
Length = 941
Score = 567 (204.7 bits), Expect = 3.1e-54, P = 3.1e-54
Identities = 120/274 (43%), Positives = 176/274 (64%)
Query: 40 LPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIY 99
+ +E + +Q I +L P+ RE AL E+ K+++ +P LA ++W + I+ LLQEI+N+Y
Sbjct: 508 IKIEDKTDHQLISDLLEPQKREEALCEIVKRKDSIPSLASLVWFTPCVISVLLQEIMNLY 567
Query: 100 PTINPAT--LTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
I+P L A SN+VCN L + Q +AS ETRSLF+ A + ++YP+L T SK++PF
Sbjct: 568 NFISPPNPKLKARASNKVCNILNIFQVIASDPETRSLFIQAKVISYIYPYLSTNSKSKPF 627
Query: 158 EYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
EYLRLT+LGVI ++K + Q++I +L+ +I CL+IME+G++LSKT + FILQKIL
Sbjct: 628 EYLRLTTLGVINTVIKQESQDIINYLIEIDISTPCLKIMENGNDLSKTASAFILQKILNW 687
Query: 218 DSGLSYICQTYDRFSHVAMILGKMVISLEKDQ-SSRLLKHVVRCYLRLSDNARAREALRQ 276
D GL+Y Q+ R S + L MV ++ D SSRLLKH+VRCYLRLS+N + R+ L
Sbjct: 688 DDGLNYFVQSPKRLSDLTNCLKYMVEAMIPDHMSSRLLKHIVRCYLRLSENLKIRDQLIG 747
Query: 277 CLPDQLRDSTFS--VCLNDDKSTKNWLAQLIKNL 308
+P + + + D K W QL+ NL
Sbjct: 748 WMPTCFSNGQLNDFIQKEGDVIVKRWFTQLLGNL 781
>TAIR|locus:2060221 [details] [associations]
symbol:AT2G32550 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0007275 "multicellular
organismal development" evidence=ISS] Pfam:PF04078 EMBL:CP002685
GenomeReviews:CT485783_GR eggNOG:COG5209 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 EMBL:AY954810 IPI:IPI00519021
RefSeq:NP_180814.2 UniGene:At.38054 ProteinModelPortal:Q58FZ9
SMR:Q58FZ9 PRIDE:Q58FZ9 DNASU:817816 EnsemblPlants:AT2G32550.1
GeneID:817816 KEGG:ath:AT2G32550 TAIR:At2g32550
HOGENOM:HOG000137501 InParanoid:Q58FZ9 OMA:LWESKNT PhylomeDB:Q58FZ9
ProtClustDB:CLSN2685062 Genevestigator:Q58FZ9 Uniprot:Q58FZ9
Length = 322
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 92/276 (33%), Positives = 140/276 (50%)
Query: 45 EKIYQWILELSIPET--RENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTI 102
E I QW+ ++ P++ + AL L+ R L +LW S T+ +LQE+ Y +
Sbjct: 47 EMIIQWVCDIHKPKSYMSDFALHNLAYHRNDFEFLPSLLWESKNTVYIMLQEVFEAYRHL 106
Query: 103 N---PATLTAHQSN--RVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPF 157
L H N RV N L Q +A H +T FL A +P + YP + T +
Sbjct: 107 AGHISLRLFPHPLNPLRVYNVFLLFQSMACHPDTSRQFLRAKMPNYFYPLMDTGLIDKSD 166
Query: 158 EYLRLTSLGVIGALVKTDEQEVIT-FLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 216
E +RL +LGVI ++K E + +L+ + ++ C++ +E GS +K VA +IL KI+
Sbjct: 167 ECMRLAALGVIAHMLKASEDGAVNRYLMESGVVGFCVKPIEFGSTETKKVALYILDKIMS 226
Query: 217 DDSGLSYICQTYDRFSHVAMILGKMVISLEK--DQSSRLLKHVVRCYLRLSDNARAREAL 274
D GL Y C DRF + +L K++ L S L V CY++LS N+RAR +
Sbjct: 227 TDQGLYYCCVLADRFYVIDELLKKVLFYLSNMVRPPSSLFSLVTGCYVKLSQNSRARNGI 286
Query: 275 RQCLPDQLRDSTFSVCLNDDKSTKNWLAQLIKNLES 310
R+ P L D TFS +D N QL++NL++
Sbjct: 287 RRYTPFLLFDGTFSRLYAEDPVAANNRIQLLQNLDN 322
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 326 313 0.00081 116 3 11 22 0.49 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 609 (65 KB)
Total size of DFA: 204 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.25u 0.09s 26.34t Elapsed: 00:00:10
Total cpu time: 26.26u 0.09s 26.35t Elapsed: 00:00:10
Start: Thu Aug 15 12:50:54 2013 End: Thu Aug 15 12:51:04 2013