RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8417
(326 letters)
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat,
transcription; 2.20A {Homo sapiens}
Length = 268
Score = 405 bits (1042), Expect = e-144
Identities = 235/267 (88%), Positives = 250/267 (93%)
Query: 43 EREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEIINIYPTI 102
+REKIYQWI ELS PETRENALLELSKKRE VPDLAPMLWHSFGTIAALLQEI+NIYP+I
Sbjct: 1 DREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSI 60
Query: 103 NPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRL 162
NP TLTAHQSNRVCNALALLQCVASH ETRS FLAAHIPLFLYPFLHT SKTRPFEYLRL
Sbjct: 61 NPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRL 120
Query: 163 TSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDSGLS 222
TSLGVIGALVKTDEQEVI FLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDD+GL+
Sbjct: 121 TSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLA 180
Query: 223 YICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLPDQL 282
YICQTY+RFSHVAMILGKMV+ L K+ S+RLLKHVVRCYLRLSDN RAREALRQCLPDQL
Sbjct: 181 YICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQL 240
Query: 283 RDSTFSVCLNDDKSTKNWLAQLIKNLE 309
+D+TF+ L DD +TK WLAQL+KNL+
Sbjct: 241 KDTTFAQVLKDDTTTKRWLAQLVKNLQ 267
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 4e-09
Identities = 58/336 (17%), Positives = 93/336 (27%), Gaps = 87/336 (25%)
Query: 13 YPVTIARTNGI----MSTQQSP-TVLQQQQALL-----------------PVEREKIYQW 50
Y V I + SP TVL+ Q LL + I
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 51 ILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAA-------LL----QEIINIY 99
+ L + EN LL L V ++ A LL +++ +
Sbjct: 234 LRRLLKSKPYENCLLVL---LNV--------QNA-KAWNAFNLSCKILLTTRFKQVTDF- 280
Query: 100 PTINPATLTAHQSNRVCNALALLQCVASHQETRSLFL-AAHIPLFLYPFLHTTSKTRPFE 158
++ AT T + L + E +SL L P T P
Sbjct: 281 --LSAATTTHISLDHHSMTL-------TPDEVKSLLLKYLDCRPQDLP--REVLTTNPR- 328
Query: 159 YLRLTSLGVIGALVKTDEQEVITFLLT------TEIIPLCLRIMESGSELSKTVATFILQ 212
L +I ++ D T II L ++E +E K F
Sbjct: 329 -----RLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEP-AEYRKM---FDRL 378
Query: 213 KILLDDSGLSYICQTYDRF------SHVAMILGKMV-ISLEKDQSSRLLKHVVRCYLRLS 265
+ + + S V +++ K+ SL + Q + YL L
Sbjct: 379 SVFPPSAHIPT--ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 266 DNARAREALRQCLPDQLRDSTFSVCLNDDKSTKNWL 301
AL + + D + D +L
Sbjct: 437 VKLENEYALHRSIVDHYN---IPKTFDSDDLIPPYL 469
Score = 49.5 bits (117), Expect = 1e-06
Identities = 58/302 (19%), Positives = 94/302 (31%), Gaps = 78/302 (25%)
Query: 40 LPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFG----TIAALLQEI 95
V R + Y L+L ALLEL + V+ + +L G + L
Sbjct: 129 YNVSRLQPY---LKL------RQALLELRPAKNVL--IDGVL--GSGKTWVALDVCLSYK 175
Query: 96 I------NIYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHI-PLFLYPFL 148
+ I+ L N L +LQ L I P +
Sbjct: 176 VQCKMDFKIF------WLNLKNCNSPETVLEMLQ---------KLLY--QIDPNWTSRSD 218
Query: 149 HTTSKTRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVAT 208
H+++ Q + LL ++ CL ++ + +K
Sbjct: 219 HSSNIKLRIH----------------SIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNA 261
Query: 209 FILQ-KILL--DDSGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLL-KHVVRCYLRL 264
F L KILL ++ +H+++ ++L D+ LL K YL
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATT-THISLD--HHSMTLTPDEVKSLLLK-----YLDC 313
Query: 265 SDNARAREALRQCLPDQLRDSTFSVCLNDDKST-KNWLAQLIKNLESVSAGVVLGAGNNL 323
RE L P R S + + D +T NW L ++ + N L
Sbjct: 314 RPQDLPREVL-TTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL----NVL 366
Query: 324 AP 325
P
Sbjct: 367 EP 368
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 5e-09
Identities = 47/312 (15%), Positives = 102/312 (32%), Gaps = 86/312 (27%)
Query: 16 TIARTNGIMS-----TQQSPTVLQQQQALLPVEREKIY---QWILELSIPETRENALLEL 67
N I + Q++ T L + + L+ K Y + + + + +AL
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELI-----KNYITARIMAKRPFDKKSNSALFRA 148
Query: 68 SKKREVVPDLAPMLWHSF---GTIAALLQEIINIY----PTINPATLTAHQSNRVCNALA 120
+ L + F G +E+ ++Y + + +
Sbjct: 149 VGEGNA--QLVAI----FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE--------T 194
Query: 121 LLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLT--SLGVIGALVKTDEQE 178
L + + + + +F L + +L S T +YL S +IG + Q
Sbjct: 195 LSELIRTTLDAEKVFTQG---LNILEWLENPSNTPDKDYLLSIPISCPLIGVI-----Q- 245
Query: 179 VITFLLTTEII---PLCLRIMESGS-------------ELSKTVATF--ILQKILLDDSG 220
+ +++T +++ P LR G+ + + +F ++K + +
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI---TV 302
Query: 221 LSYI---CQ-TYDRFSHVAMILGK-----------M--VISLEKDQSSRLLKHVVRCYLR 263
L +I C Y S IL M + +L ++Q + +V +
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ---VQDYVNKTNSH 359
Query: 264 LSDNARAREALR 275
L + +L
Sbjct: 360 LPAGKQVEISLV 371
Score = 45.8 bits (108), Expect = 1e-05
Identities = 53/292 (18%), Positives = 92/292 (31%), Gaps = 103/292 (35%)
Query: 65 LELSKKREVVPDLAPMLW-----HSFGTIAALLQEIINIYPTINPATLTAH------QSN 113
++L K + D+ W H T + +I+ NP LT H +
Sbjct: 1633 MDLYKTSKAAQDV----WNRADNHFKDTYGFSILDIV----INNPVNLTIHFGGEKGKRI 1684
Query: 114 RVCNALALL--QCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGAL 171
R N A++ V +T +F + Y F L T
Sbjct: 1685 RE-NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS------EKGLLSATQ------- 1730
Query: 172 VKTDEQEVITF----LLTTEIIPLCLRIMES-GSELSKTVATFILQKILLDDSGLS---Y 223
F L E ++S G L ATF +G S Y
Sbjct: 1731 ----------FTQPALTLMEK--AAFEDLKSKG--LIPADATF---------AGHSLGEY 1767
Query: 224 ICQTYDRFS---HVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCLP- 279
+ +A V+S+E L++ VV R ++ +P
Sbjct: 1768 --------AALASLA---D--VMSIE-S----LVE-VVF--------YRGM-TMQVAVPR 1799
Query: 280 DQLRDSTFSVC-LNDDKSTKNWLAQLIKNL-ESVSA--GVVLGAGN-NLAPQ 326
D+L S + + +N + ++ + ++ + E V G ++ N N+ Q
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ 1851
Score = 38.1 bits (88), Expect = 0.004
Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 24/110 (21%)
Query: 6 ISEIVVIYPVTIA-----------RTN-GIMSTQQSPTVLQQQQALLPVEREKIYQWILE 53
I +IV+ PV + R N M + + + + E +
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 54 -----LSIPE-------TRENALLELSKKREVVPDLAPMLWHSFGTIAAL 91
LS + E A E K + ++P A HS G AAL
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL 1770
Score = 29.6 bits (66), Expect = 2.0
Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 40/185 (21%)
Query: 154 TRPFEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMES-GSELSKTVATFILQ 212
TRP L L+ G+L E L+ T + ++ E L + F
Sbjct: 6 TRP---LTLSH----GSL------EH-VLLVPTASFFIASQLQEQFNKILPEPTEGFAA- 50
Query: 213 KILLDDSGLSYICQTYDRF-SHVAMILGKMVISLEKDQSSRLLKHVV----RCYLRLSD- 266
DD + + +F +V+ +V + Q ++L + CYL +D
Sbjct: 51 ----DDEPTTPA-ELVGKFLGYVS----SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101
Query: 267 NARAREALRQCLPDQLRD-----STFSVCLNDDKSTKNWL-AQLIKNLESVSAGVVL--- 317
+A A + L++ ++ + + + + + L + + +A +V
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 318 GAGNN 322
G GN
Sbjct: 162 GQGNT 166
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.12
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 19/49 (38%)
Query: 45 EKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQ 93
EK Q + +L + +L K D AP L I A ++
Sbjct: 18 EK--QALKKL------QASL----KLYA--DDSAPAL-----AIKATME 47
>3hhw_K Nucleoprotein; protein complex, template, replication, negative
strand RNA chaperone, phosphoprotein, RNA replication,
virion; HET: TAR; 2.70A {Vesicular stomatitis indiana
virus} PDB: 2qvj_A* 3ptx_A 3hhz_K 3pto_A 3pu0_A 3pu1_A
3pu4_A 2gic_A 2wyy_A 3pmk_A
Length = 421
Score = 29.3 bits (65), Expect = 1.7
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 27/129 (20%)
Query: 90 ALLQEIINIYPTINPATLT-AHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFL 148
L+ + N IN + + + ++ + A + +F + F
Sbjct: 154 KLMDGLTNQCKMINEQFEPLVPEGRDIFDVWG--------NDSNYTKIVAAVDMFFHMF- 204
Query: 149 HTTSKTRPFEYLR-------------LTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRI 195
K R L + G + + ++V T++L E+ +++
Sbjct: 205 ----KKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQM 260
Query: 196 MESGSELSK 204
M G E+ K
Sbjct: 261 MLPGQEIDK 269
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 29.1 bits (65), Expect = 2.1
Identities = 13/105 (12%), Positives = 33/105 (31%), Gaps = 9/105 (8%)
Query: 115 VCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKT 174
+ +L+ ++ + + A L L S + L L + L
Sbjct: 200 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-----QRLVQNCLWTLRNLSDA 254
Query: 175 DEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDS 219
++ ++ ++++ S T A IL + ++
Sbjct: 255 ATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 295
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 29.0 bits (65), Expect = 2.2
Identities = 13/105 (12%), Positives = 33/105 (31%), Gaps = 9/105 (8%)
Query: 115 VCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVKT 174
+ +L+ ++ + + A L L S + L L + L
Sbjct: 203 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-----QRLVQNCLWTLRNLSDA 257
Query: 175 DEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDS 219
++ ++ ++++ S T A IL + ++
Sbjct: 258 ATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298
>2gtt_A Nucleoprotein; protein-RNA complex, viral PROT binding protein;
3.49A {Rabies virus} SCOP: a.260.1.1
Length = 450
Score = 29.0 bits (64), Expect = 2.5
Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 7/78 (8%)
Query: 134 LFLAAHIPLFLYPFLHTTSKTR----PFEY---LRLTSLGVIGALVKTDEQEVITFLLTT 186
FLA +F H S R Y L S + +E I +
Sbjct: 204 RFLAGTYDMFFSRIEHLYSAIRVGTVVTAYEDCSGLVSFTGFIKQINLTAREAILYFFHK 263
Query: 187 EIIPLCLRIMESGSELSK 204
R+ E G E +
Sbjct: 264 NFEEEIRRMFEPGQETAV 281
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger,
zinc-binding protein, ubiquitin LI antitumor protein;
1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Length = 210
Score = 27.8 bits (61), Expect = 3.7
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Query: 235 AMILGKMVISLEKDQSSRLLKHVV--RCYLRLSDNARAREALRQCLPDQLRDSTFSVCLN 292
++ G ++ E ++ K Y R+R Q LP F +
Sbjct: 56 GILNGCWILKFEWVKACLRRKVCEQEEKYEIPEGPRRSRLNREQLLPKLFDGCYFYLWGT 115
Query: 293 DDKSTKNWLAQLIK 306
K+ L +L+
Sbjct: 116 FKHHPKDNLIKLVT 129
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A
{Halothermothrix orenii}
Length = 327
Score = 27.9 bits (63), Expect = 4.2
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 54 LSIPETRE--NALLELSKKREVV----PDLAPMLWHSFGTIAALLQEII 96
LS R+ ++++ + P +LW A +++EII
Sbjct: 155 LSRKPARDTAIKAFNYAREQGKIVCFDPCYRKVLWPEGDDGAGVVEEII 203
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Length = 332
Score = 27.9 bits (63), Expect = 4.4
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 54 LSIPETRE--NALLELSKKREVV----PDLAPMLWHSFGTIAALLQEII 96
LS +RE + L+K+ +V D P W + A +
Sbjct: 149 LSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYSWETPEETAVYYSLVA 197
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 27.7 bits (62), Expect = 4.8
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 35 QQQALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQE 94
++Q LLP E +++Q++L S+ E AL L P M+ + A L
Sbjct: 9 REQCLLPPEDSRLWQYLLSRSMREH--PALRSLRLLTLEQPQGDSMMTCEQAQLLANLAR 66
Query: 95 IINIYPTINPATLTAHQSNRVCNALAL 121
+I ++ T T + + + ALAL
Sbjct: 67 LIQAKKALDLGTFTGYSA--LALALAL 91
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 27.7 bits (61), Expect = 6.9
Identities = 13/108 (12%), Positives = 33/108 (30%), Gaps = 9/108 (8%)
Query: 112 SNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLRLTSLGVIGAL 171
+ +L+ ++ + + A L L S + L L + L
Sbjct: 333 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-----QRLVQNCLWTLRNL 387
Query: 172 VKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDS 219
++ ++ ++++ S T A IL + ++
Sbjct: 388 SDAATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431
Score = 27.3 bits (60), Expect = 9.5
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 115 VCNALALLQCVASHQETRSLFLAAH-IPLFLYPFLHTTSKTRPFEYLRLTSLGVIGALVK 173
V L +A R + + IPLF+ + + GV+ L +
Sbjct: 569 VEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQ------RVAAGVLCELAQ 622
Query: 174 TDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLD 217
E + ++ S +E T A +L ++ D
Sbjct: 623 DKEA--AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED 664
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 26.9 bits (59), Expect = 9.4
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 198 SGSELSKTVATFILQKILLDDSGLSYICQTYDRFSHVAMI 237
S + + + + L+DS + Y C + R+
Sbjct: 66 SVQQFDDYHSEMNMSALELEDSAM-YFCASSLRWGDEQYF 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.386
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,718,626
Number of extensions: 272293
Number of successful extensions: 548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 26
Length of query: 326
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 232
Effective length of database: 4,077,219
Effective search space: 945914808
Effective search space used: 945914808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)