RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8417
         (326 letters)



>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1,
           COMTD1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 219

 Score = 31.7 bits (71), Expect = 0.090
 Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 8/174 (4%)

Query: 37  QALLPVEREKIYQWILELSIPETRENALLELSKKREVVPDLAPMLWHSFGTIAALLQEII 96
           Q LLP E  +++Q++L  S+ E    AL  L       P    M+      + A L  +I
Sbjct: 1   QCLLPPEDSRLWQYLLSRSMREH--PALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLI 58

Query: 97  NIYPTINPATLTAHQSNRVCNALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRP 156
                ++  T T        +ALAL   + +     +  + A  P    P          
Sbjct: 59  QAKKALDLGTFT------GYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHK 112

Query: 157 FEYLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFI 210
            +     +L  +  L+   E       +       C    E   +L +      
Sbjct: 113 IDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILA 166


>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta
           subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 325

 Score = 28.4 bits (63), Expect = 1.1
 Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 22/125 (17%)

Query: 159 YLRLTSLGVIGALVKTDEQEVITFL--------------------LTTEIIPLCLRIMES 198
           Y  LT + ++G L + +++E++ F+                    L T      L + +S
Sbjct: 45  YWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDS 104

Query: 199 GSELSKTVATFILQKILLDDSGL--SYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKH 256
              ++       +Q +  +D         +   RFS  A+    ++  L+     + ++ 
Sbjct: 105 IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEF 164

Query: 257 VVRCY 261
           V+ C 
Sbjct: 165 VLSCM 169


>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex
           {Chlamydomonas reinhardtii [TaxId: 3055]}
          Length = 156

 Score = 27.4 bits (61), Expect = 1.7
 Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 12/66 (18%)

Query: 118 ALALLQCVASHQETRSLFLAAHIPLFLYPFLHTTSKTRPFEY------------LRLTSL 165
              +L+ V +      L  A    L   PF+ + +K +                L    L
Sbjct: 81  VFQILRVVPNKLLGVLLMAAVPAGLITVPFIESINKFQNPYRRPIATILFLLGTLVAVWL 140

Query: 166 GVIGAL 171
           G+    
Sbjct: 141 GIGSTF 146


>d2gica1 a.260.1.1 (A:2-422) Nucleoprotein {Vesicular stomatitis
           indiana virus [TaxId: 11277]}
          Length = 421

 Score = 27.5 bits (61), Expect = 2.6
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 18/84 (21%)

Query: 134 LFLAAHIPLFLYPFLHTTSKTRPFEYLR-------------LTSLGVIGALVKTDEQEVI 180
             + A + +F + F     K       R             L + G +  +     ++V 
Sbjct: 191 TKIVAAVDMFFHMF-----KKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVT 245

Query: 181 TFLLTTEIIPLCLRIMESGSELSK 204
           T++L  E+    +++M  G E+ K
Sbjct: 246 TWILNREVADEMVQMMLPGQEIDK 269


>d2gtta1 a.260.1.1 (A:6-448) Nucleoprotein {Rabies virus [TaxId:
           11292]}
          Length = 443

 Score = 27.2 bits (60), Expect = 2.8
 Identities = 14/90 (15%), Positives = 22/90 (24%), Gaps = 19/90 (21%)

Query: 129 QETRSLFLAAHIPLFLYPFLHTTSKTRPFEYLR-------------LTSLGVIGALVKTD 175
                 FLA    +F     H       +  +R             L S       +   
Sbjct: 194 TIPNFRFLAGTYDMFFSRIEH------LYSAIRVGTVVTAYEDCSGLVSFTGFIKQINLT 247

Query: 176 EQEVITFLLTTEIIPLCLRIMESGSELSKT 205
            +E I +           R+ E G E +  
Sbjct: 248 AREAILYFFHKNFEEEIRRMFEPGQETAVP 277


>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 346

 Score = 26.5 bits (58), Expect = 5.2
 Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 6/132 (4%)

Query: 159 YLRLTSLGVIGALVKTDEQEVITFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDD 218
           +  L+ L ++ +L   ++ ++I ++ + +++P   R          +        I  + 
Sbjct: 35  FFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYL----GIPFNP 90

Query: 219 SGLSYICQTYDRFSHVAMILGKMVISLEKDQSSRLLKHVVRCYLRLSDNARAREALRQCL 278
           S        YD   H+AM     +  L              C   L        +     
Sbjct: 91  SKNPGTAHPYD-SGHIAMTYTG-LSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVP 148

Query: 279 PDQLRDSTFSVC 290
                D  F  C
Sbjct: 149 EGSENDMRFVYC 160


>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 57

 Score = 24.1 bits (52), Expect = 6.6
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 36 QQALLPVERE-----KIYQWILELSIPETRENALLELSKKREVVPDLAPMLW 82
          +Q +L V  +     KI Q + +  +P+   N +L   KK + V    P  W
Sbjct: 3  EQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSPEPATW 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,115,192
Number of extensions: 48554
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 9
Length of query: 326
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 240
Effective length of database: 1,226,816
Effective search space: 294435840
Effective search space used: 294435840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)