BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy842
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CPV3|RM42_MOUSE 39S ribosomal protein L42, mitochondrial OS=Mus musculus GN=Mrpl42
PE=2 SV=1
Length = 142
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 15 IAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKEEF-- 72
+A+TADG T+VC+HP PYEH+ P+P + N Q ++ V K K+ E
Sbjct: 48 LALTADGRTIVCYHPSVDIPYEHTKPIPQPDLLHNNEETHEQILKAKLEVRKSKQLEQGP 107
Query: 73 VRQDLMNITFTNKHRWFPVRKMRQKKRYFKP 103
+ + L + +T KHRW+P + +++ P
Sbjct: 108 MIEQLSKVFYTTKHRWYPHGQYHNRRKKLNP 138
>sp|Q5R4S3|RM42_PONAB 39S ribosomal protein L42, mitochondrial OS=Pongo abelii GN=MRPL42
PE=2 SV=1
Length = 139
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 17/92 (18%)
Query: 14 KIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYN-VFKPKKEEF 72
++A+T+DG T+VC+HP PYEH+ P+P + V N +E ++ V K + EE
Sbjct: 48 ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPD--------PVHNNEETHDQVLKTRLEEK 99
Query: 73 VR--------QDLMNITFTNKHRWFPVRKMRQ 96
V + L + FT KHRW+P + R+
Sbjct: 100 VEHLEEGPMIEQLSKMFFTTKHRWYPHGRCRK 131
>sp|Q9Y6G3|RM42_HUMAN 39S ribosomal protein L42, mitochondrial OS=Homo sapiens GN=MRPL42
PE=1 SV=1
Length = 142
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 17/99 (17%)
Query: 14 KIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYN-VFKPKKEEF 72
++A+T+DG T+VC+HP PYEH+ P+P + V N +E ++ V K + EE
Sbjct: 48 ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPD--------PVHNNEETHDQVLKTRLEEK 99
Query: 73 VR--------QDLMNITFTNKHRWFPVRKMRQKKRYFKP 103
V + L + FT KHRW+P + + ++ P
Sbjct: 100 VEHLEEGPMIEQLSKMFFTTKHRWYPHGRYHRCRKNLNP 138
>sp|P82927|RM42_BOVIN 39S ribosomal protein L42, mitochondrial OS=Bos taurus GN=MRPL42
PE=1 SV=2
Length = 142
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 17/99 (17%)
Query: 14 KIAITADGTTVVCWHPEQPFPYEHSLPL----PVTEQQSTNSILKVQNVQEIYNVFKPKK 69
++A+T+D T+VC+HP PYEH+ P+ PV + T+ ++ ++E K
Sbjct: 48 ELALTSDARTIVCYHPSVDIPYEHTKPIPRPDPVHNNEETHDLVLKTRLEE--------K 99
Query: 70 EEFVRQD-----LMNITFTNKHRWFPVRKMRQKKRYFKP 103
E + Q L + FT KHRW+P + +++R P
Sbjct: 100 SEHLEQGPMIEQLSKMFFTTKHRWYPRGQYHRRRRKLNP 138
>sp|P0C2B9|RM42_RAT 28S ribosomal protein L42, mitochondrial OS=Rattus norvegicus
GN=Mrpl42 PE=1 SV=1
Length = 141
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 14 KIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQ-EIYNVFKPKKEEF 72
++A+T+DG T+VC+HP PYEH+ P+P + N Q ++ ++ K ++
Sbjct: 47 ELALTSDGRTIVCYHPSVDVPYEHTKPIPHPDLLHNNEETHEQILRTKLEGNHKHLEQGP 106
Query: 73 VRQDLMNITFTNKHRWFPVRKMRQKKRYFKP 103
+ + L + FT KHRW+P + + ++ P
Sbjct: 107 MIEQLSKVFFTTKHRWYPHGQYHRCRKKLNP 137
>sp|B1XJJ3|RL6_SYNP2 50S ribosomal protein L6 OS=Synechococcus sp. (strain ATCC 27264
/ PCC 7002 / PR-6) GN=rplF PE=3 SV=1
Length = 180
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 1 MSSLLRRLVPLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSIL 53
MS + ++ +P+ K+ +T +G V P+ E +LP VT Q N+I+
Sbjct: 1 MSRIGKKPIPIPDKVTVTLNGANVAVKGPKGSL--ERTLPEKVTVTQEDNTIV 51
>sp|B8HMR8|RL6_CYAP4 50S ribosomal protein L6 OS=Cyanothece sp. (strain PCC 7425 /
ATCC 29141) GN=rplF PE=3 SV=1
Length = 191
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 1 MSSLLRRLVPLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSIL 53
MS + +R +P+ K+A+T DG+TV P+ LP V Q +S+L
Sbjct: 1 MSRIGKRPIPIPDKVAVTIDGSTVKVKGPKGEL--SQVLPPEVVVVQENSSLL 51
>sp|Q6PAC3|DCA13_MOUSE DDB1- and CUL4-associated factor 13 OS=Mus musculus GN=Dcaf13 PE=2
SV=2
Length = 445
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 5 LRRLVPLTHKIAITADGTTVVCWHPEQPFPY-----EHSLPLPVTEQQSTNSILKVQNVQ 59
+R+ PL K I T +CW+P + F + +++L T ++ + +V
Sbjct: 226 MRQATPL--KKVILEMRTNTICWNPMEAFNFTAANEDYNLYTFDMRALDTPVMVHMDHVS 283
Query: 60 EIYNV-FKPKKEEFVRQDLMNITFTNKHRWFPVRKMRQKKRY 100
+ +V + P +EFV + +F R FPV K R ++ Y
Sbjct: 284 AVLDVDYSPTGKEFV-----SASFDKSIRIFPVDKSRSREVY 320
>sp|Q5R4T8|DCA13_PONAB DDB1- and CUL4-associated factor 13 OS=Pongo abelii GN=DCAF13 PE=2
SV=1
Length = 445
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 5 LRRLVPLTHKIAITADGTTVVCWHPEQPFPY-----EHSLPLPVTEQQSTNSILKVQNVQ 59
+R+ PL K I T +CW+P + F + +++L T ++ + +V
Sbjct: 226 MRQATPL--KKVILDMRTNTICWNPMEAFIFTAANEDYNLYTFDMSALDTPVMVHMDHVS 283
Query: 60 EIYNV-FKPKKEEFVRQDLMNITFTNKHRWFPVRKMRQKKRY 100
+ +V + P +EFV + +F R FPV K R ++ Y
Sbjct: 284 AVLDVDYSPTGKEFV-----SASFDKSIRIFPVDKSRSREVY 320
>sp|Q9NV06|DCA13_HUMAN DDB1- and CUL4-associated factor 13 OS=Homo sapiens GN=DCAF13 PE=1
SV=2
Length = 445
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 5 LRRLVPLTHKIAITADGTTVVCWHPEQPFPY-----EHSLPLPVTEQQSTNSILKVQNVQ 59
+R+ PL K I T +CW+P + F + +++L T ++ + +V
Sbjct: 226 MRQATPL--KKVILDMRTNTICWNPMEAFIFTAANEDYNLYTFDMRALDTPVMVHMDHVS 283
Query: 60 EIYNV-FKPKKEEFVRQDLMNITFTNKHRWFPVRKMRQKKRY 100
+ +V + P +EFV + +F R FPV K R ++ Y
Sbjct: 284 AVLDVDYSPTGKEFV-----SASFDKSIRIFPVDKSRSREVY 320
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,179,362
Number of Sequences: 539616
Number of extensions: 1575212
Number of successful extensions: 4145
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4135
Number of HSP's gapped (non-prelim): 13
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)