Query psy842
Match_columns 111
No_of_seqs 70 out of 72
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 18:25:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dbo_A Uncharacterized protein 63.0 1.5 5.2E-05 29.8 0.0 26 1-27 20-45 (93)
2 3fpr_A Evasin-1; novel fold, g 60.8 6.4 0.00022 27.6 2.9 26 4-29 53-87 (100)
3 3m9q_A Protein MALE-specific l 44.2 11 0.00036 26.1 1.8 22 16-37 18-42 (101)
4 3oa6_A MALE-specific lethal 3 40.4 14 0.00046 26.0 1.9 19 19-37 21-42 (110)
5 2odk_A Hypothetical protein; p 34.3 25 0.00086 22.7 2.3 26 2-28 16-41 (89)
6 3hs2_A PHD protein, prevent HO 34.0 14 0.00048 21.9 1.0 23 2-25 14-36 (58)
7 3ch0_A Glycerophosphodiester p 32.0 17 0.00059 26.7 1.4 16 14-30 43-58 (272)
8 2otd_A Glycerophosphodiester p 31.8 18 0.0006 26.4 1.4 16 14-30 41-56 (247)
9 2o55_A Putative glycerophospho 29.6 20 0.00067 26.3 1.3 16 14-30 43-58 (258)
10 1vd6_A Glycerophosphoryl diest 29.4 20 0.00068 25.9 1.3 16 14-30 42-57 (224)
11 3hry_A PHD protein, prevent HO 28.8 22 0.00074 22.1 1.2 23 2-25 14-36 (73)
12 2oog_A Glycerophosphoryl diest 27.5 23 0.00078 26.5 1.4 16 14-30 59-74 (287)
13 1zcc_A Glycerophosphodiester p 27.3 23 0.00079 26.0 1.4 16 14-30 36-51 (248)
14 2k57_A Putative lipoprotein; s 27.2 35 0.0012 21.7 2.0 13 14-26 5-17 (61)
15 3if4_A Integron cassette prote 26.8 45 0.0015 23.8 2.7 31 10-41 25-55 (119)
16 1ydy_A Glycerophosphoryl diest 26.6 23 0.0008 27.5 1.3 16 14-30 65-80 (356)
17 2pz0_A Glycerophosphoryl diest 26.5 25 0.00084 25.9 1.4 16 14-30 46-61 (252)
18 2rd1_A Putative outer membrane 26.1 36 0.0012 21.7 1.9 13 14-26 5-17 (62)
19 3bdu_A Putative lipoprotein; X 25.5 38 0.0013 21.6 1.9 13 15-27 6-18 (62)
20 3no3_A Glycerophosphodiester p 25.5 26 0.00088 25.7 1.3 16 14-30 41-56 (238)
21 2rb6_A Uncharacterized protein 24.9 39 0.0013 21.4 1.9 13 14-26 5-17 (61)
22 1o1z_A GDPD, glycerophosphodie 24.2 28 0.00096 25.4 1.3 16 14-30 47-62 (234)
23 3l12_A Putative glycerophospho 23.8 29 0.00098 26.4 1.3 16 14-30 52-67 (313)
24 2jn0_A Hypothetical lipoprotei 22.8 39 0.0013 21.5 1.6 13 14-26 5-17 (61)
25 3qvq_A Phosphodiesterase OLEI0 22.1 33 0.0011 25.2 1.3 15 14-29 44-58 (252)
26 2qe8_A Uncharacterized protein 21.2 27 0.00091 25.7 0.7 21 7-27 14-34 (343)
27 1o22_A Orphan protein TM0875; 21.1 32 0.0011 25.6 1.1 26 65-91 132-157 (170)
28 2a6q_A Antitoxin YEFM; YEFM, a 20.8 37 0.0013 21.2 1.2 24 2-25 17-40 (86)
29 2ra2_A Putative lipoprotein; X 20.0 52 0.0018 21.0 1.8 13 14-26 6-18 (64)
30 3i10_A Putative glycerophospho 20.0 38 0.0013 26.0 1.3 15 14-29 52-66 (278)
No 1
>3dbo_A Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=62.98 E-value=1.5 Score=29.77 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=0.0
Q ss_pred ChhhhhhhccccceeEEeeCCcEEEEe
Q psy842 1 MSSLLRRLVPLTHKIAITADGTTVVCW 27 (111)
Q Consensus 1 ~~~l~rr~~s~~~~iavTsDG~tIVcw 27 (111)
+|.||++.+. .++|.||.+|+-|+--
T Consensus 20 ls~ll~~v~~-GE~vvITr~GkPvA~L 45 (93)
T 3dbo_A 20 TAGVLRRVRA-GEDVTITVSGRPVAVL 45 (93)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHC-CCcEEEEECCEEEEEE
Confidence 3678888876 7899999999888733
No 2
>3fpr_A Evasin-1; novel fold, glycoprotein, secreted, immune system; 1.63A {Rhipicephalus sanguineus} PDB: 3fpt_A* 3fpu_A
Probab=60.77 E-value=6.4 Score=27.57 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=19.9
Q ss_pred hhhhhccccc---eeEEeeCC------cEEEEecC
Q psy842 4 LLRRLVPLTH---KIAITADG------TTVVCWHP 29 (111)
Q Consensus 4 l~rr~~s~~~---~iavTsDG------~tIVcwHP 29 (111)
-++|+++-.. .|++.+|| |.+||||=
T Consensus 53 ~a~rMt~~~pY~CplG~C~nG~C~~~~r~~~Cw~~ 87 (100)
T 3fpr_A 53 GLRRMTANLPYDCPLGQCSNGDCIPKETYEVCYRR 87 (100)
T ss_dssp HHHHSCTTCCEEEEEEEEETTEEEEEEEEEEEBCC
T ss_pred HHHhhcCCCCcccCcccccCCcccCCCcEeeeecC
Confidence 3567776666 88999987 67899984
No 3
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=44.17 E-value=11 Score=26.05 Aligned_cols=22 Identities=23% Similarity=0.640 Sum_probs=16.6
Q ss_pred EEeeCCcEEEEecCC---CCCCccc
Q psy842 16 AITADGTTVVCWHPE---QPFPYEH 37 (111)
Q Consensus 16 avTsDG~tIVcwHP~---~~fPYEh 37 (111)
..-+-|..++|||++ .+.+||-
T Consensus 18 ~~f~~GEkVLc~h~d~~kg~~lYeA 42 (101)
T 3m9q_A 18 PLFHKGEIVLCYEPDKSKARVLYTS 42 (101)
T ss_dssp CCCCTTCEEEEECCCTTSCCCEEEE
T ss_pred CcccCCCEEEEEecCCCCCCcceEe
Confidence 344568899999986 6778884
No 4
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=40.41 E-value=14 Score=25.97 Aligned_cols=19 Identities=26% Similarity=0.767 Sum_probs=14.2
Q ss_pred eCCcEEEEecCCC---CCCccc
Q psy842 19 ADGTTVVCWHPEQ---PFPYEH 37 (111)
Q Consensus 19 sDG~tIVcwHP~~---~fPYEh 37 (111)
..|..|+||||+. ++=||-
T Consensus 21 ~~gEkVLc~h~d~~kg~llYeA 42 (110)
T 3oa6_A 21 HSGEKVLCFEPDPTKARVLYDA 42 (110)
T ss_dssp CTTCEEEEECSCTTSCCCEEEE
T ss_pred CCCCEEEEEecCCCCCcccEEE
Confidence 4577999999983 456874
No 5
>2odk_A Hypothetical protein; prevent-HOST-death protein, structural genomics, APC7367, PS protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: d.306.1.1
Probab=34.27 E-value=25 Score=22.72 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=20.0
Q ss_pred hhhhhhhccccceeEEeeCCcEEEEec
Q psy842 2 SSLLRRLVPLTHKIAITADGTTVVCWH 28 (111)
Q Consensus 2 ~~l~rr~~s~~~~iavTsDG~tIVcwH 28 (111)
|.|+.+... .+.|.||.+|+-.+--=
T Consensus 16 s~l~~~v~~-~epv~ITr~G~~~avl~ 41 (89)
T 2odk_A 16 SEFLDACIT-EGPQIVSRRGAEEAVLV 41 (89)
T ss_dssp HHHHHHHHH-TCCEEEEETTEEEEEEE
T ss_pred HHHHHHHhc-CCCEEEEECCcceEEEe
Confidence 567777776 57999999999877443
No 6
>3hs2_A PHD protein, prevent HOST death protein; intrinsic disorder, DOC, toxin-anti antitoxin; 2.20A {Enterobacteria phage P1}
Probab=33.99 E-value=14 Score=21.94 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=16.6
Q ss_pred hhhhhhhccccceeEEeeCCcEEE
Q psy842 2 SSLLRRLVPLTHKIAITADGTTVV 25 (111)
Q Consensus 2 ~~l~rr~~s~~~~iavTsDG~tIV 25 (111)
+.|+.+. .-.+.|.||.+|+-++
T Consensus 14 ~~ll~~v-~~~e~v~Itr~g~~~a 36 (58)
T 3hs2_A 14 SEVLNNV-EAGEEVEITRRGREPA 36 (58)
T ss_dssp HHHHHHH-HTTCCEEEECTTSCCE
T ss_pred HHHHHHH-hCCCcEEEEECCCceE
Confidence 5677776 3567899999997544
No 7
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=31.98 E-value=17 Score=26.72 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=13.0
Q ss_pred eeEEeeCCcEEEEecCC
Q psy842 14 KIAITADGTTVVCWHPE 30 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP~ 30 (111)
.|.+|.|| .+||+|-.
T Consensus 43 DV~lTkDg-~lVv~HD~ 58 (272)
T 3ch0_A 43 DLVISKDN-RVVVSHDT 58 (272)
T ss_dssp EEEECTTC-CEEECSSS
T ss_pred eeeEcCCC-cEEEeCCC
Confidence 68899999 78888854
No 8
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=31.81 E-value=18 Score=26.43 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=12.9
Q ss_pred eeEEeeCCcEEEEecCC
Q psy842 14 KIAITADGTTVVCWHPE 30 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP~ 30 (111)
.|-+|.|| .+||+|-.
T Consensus 41 DV~lTkDg-~lVv~HD~ 56 (247)
T 2otd_A 41 DAKLSKDG-EIFLLHDD 56 (247)
T ss_dssp EEEECTTC-CEEECSSS
T ss_pred EeeEccCC-cEEEECCC
Confidence 68899999 77888854
No 9
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=29.65 E-value=20 Score=26.34 Aligned_cols=16 Identities=19% Similarity=0.507 Sum_probs=13.7
Q ss_pred eeEEeeCCcEEEEecCC
Q psy842 14 KIAITADGTTVVCWHPE 30 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP~ 30 (111)
.|-+|.|| .+||+|=.
T Consensus 43 DV~lTkDg-~lVv~HD~ 58 (258)
T 2o55_A 43 DLRVCKTG-EIVLFHGT 58 (258)
T ss_dssp EEEECTTS-CEEECCCS
T ss_pred EEEEecCC-eEEEEeCC
Confidence 67899999 78889976
No 10
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=29.44 E-value=20 Score=25.87 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.1
Q ss_pred eeEEeeCCcEEEEecCC
Q psy842 14 KIAITADGTTVVCWHPE 30 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP~ 30 (111)
.|-+|.|| .+||+|-.
T Consensus 42 DV~lT~Dg-~lVv~HD~ 57 (224)
T 1vd6_A 42 DVWPTRDG-VFAVRHDP 57 (224)
T ss_dssp EEEECTTS-CEEECSCS
T ss_pred EeeEecCC-cEEEECCC
Confidence 67889999 78888854
No 11
>3hry_A PHD protein, prevent HOST death protein; intrinsic disorder, DOC, antitoxin; 2.25A {Escherichia coli} PDB: 3k33_B 3kh2_E
Probab=28.81 E-value=22 Score=22.11 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=16.5
Q ss_pred hhhhhhhccccceeEEeeCCcEEE
Q psy842 2 SSLLRRLVPLTHKIAITADGTTVV 25 (111)
Q Consensus 2 ~~l~rr~~s~~~~iavTsDG~tIV 25 (111)
+.|+.+. .-.+.|.||.+|+-++
T Consensus 14 ~~ll~~v-~~~e~v~Itr~g~~~a 36 (73)
T 3hry_A 14 SEVLNNV-EAGEEVEITRRGREPA 36 (73)
T ss_dssp HHHHHHH-TTTCCEEEECSSSCCE
T ss_pred HHHHHHH-hCCCcEEEEECCCceE
Confidence 5677775 4567899999997444
No 12
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=27.49 E-value=23 Score=26.55 Aligned_cols=16 Identities=38% Similarity=0.571 Sum_probs=13.4
Q ss_pred eeEEeeCCcEEEEecCC
Q psy842 14 KIAITADGTTVVCWHPE 30 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP~ 30 (111)
.|-+|.|| .+||+|-.
T Consensus 59 DV~lTkDG-~lVv~HD~ 74 (287)
T 2oog_A 59 DLQRTKDG-HLVAMHDE 74 (287)
T ss_dssp EEEECTTC-CEEECSSS
T ss_pred EeeEccCC-cEEEECCC
Confidence 77899999 78888865
No 13
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=27.33 E-value=23 Score=25.99 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=13.3
Q ss_pred eeEEeeCCcEEEEecCC
Q psy842 14 KIAITADGTTVVCWHPE 30 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP~ 30 (111)
.|-+|.|| .+||+|-.
T Consensus 36 DV~lTkDg-~lVv~HD~ 51 (248)
T 1zcc_A 36 DVRESADG-VLYVIHDE 51 (248)
T ss_dssp EEEECTTC-CEEECSSS
T ss_pred EeeEcCCC-CEEEECCC
Confidence 68899999 78888865
No 14
>2k57_A Putative lipoprotein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas syringae PV} SCOP: b.38.1.6
Probab=27.19 E-value=35 Score=21.66 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=10.3
Q ss_pred eeEEeeCCcEEEE
Q psy842 14 KIAITADGTTVVC 26 (111)
Q Consensus 14 ~iavTsDG~tIVc 26 (111)
-+.-|.||++||+
T Consensus 5 yvitt~DG~~IvT 17 (61)
T 2k57_A 5 TVITLNDGREIQA 17 (61)
T ss_dssp EEEEESSSCEEEE
T ss_pred eEEEeCCCcEEEc
Confidence 3456999999995
No 15
>3if4_A Integron cassette protein HFX_CASS5; integron cassette protein mobIle metagenome structural genomics PSI-2 protein structure initiative midwest center for structural genomics; HET: MSE; 2.18A {Unidentified}
Probab=26.78 E-value=45 Score=23.78 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=23.7
Q ss_pred cccceeEEeeCCcEEEEecCCCCCCcccccCC
Q psy842 10 PLTHKIAITADGTTVVCWHPEQPFPYEHSLPL 41 (111)
Q Consensus 10 s~~~~iavTsDG~tIVcwHP~~~fPYEhTKPI 41 (111)
.++.+|-|...||.+|.- -...|||=+---+
T Consensus 25 e~ia~IEvd~~Grihv~p-~~s~FpYIYREAm 55 (119)
T 3if4_A 25 EFVAAIEIDGTGRIHVTP-GESQFPYIYREAM 55 (119)
T ss_dssp EEEEEEEECTTSCEEEEE-SSCCCTTGGGGCS
T ss_pred HHHHHeeeccCCcEEEee-CCCcCceeeeehe
Confidence 355688999999999987 6778999664433
No 16
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A
Probab=26.58 E-value=23 Score=27.48 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=13.2
Q ss_pred eeEEeeCCcEEEEecCC
Q psy842 14 KIAITADGTTVVCWHPE 30 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP~ 30 (111)
.|.+|.|| .+||+|=.
T Consensus 65 DV~lTkDg-~lVv~HD~ 80 (356)
T 1ydy_A 65 DLVMTKDD-NLVVLHDH 80 (356)
T ss_dssp EEEECTTS-CEEECSSS
T ss_pred eeEECCCC-cEEEeCCC
Confidence 68899999 78888854
No 17
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=26.49 E-value=25 Score=25.85 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=13.1
Q ss_pred eeEEeeCCcEEEEecCC
Q psy842 14 KIAITADGTTVVCWHPE 30 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP~ 30 (111)
.|-+|.|| .+||+|=.
T Consensus 46 DV~lTkDG-~lVv~HD~ 61 (252)
T 2pz0_A 46 DVQLTKDG-HLVVIHDE 61 (252)
T ss_dssp EEEECTTC-CEEECSSS
T ss_pred EEEEecCC-eEEEEcCC
Confidence 67889999 78888854
No 18
>2rd1_A Putative outer membrane lipoprotein; X-RAY, NESG, Q7CQI7, STR87A, structural genomics, PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=26.06 E-value=36 Score=21.66 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=10.3
Q ss_pred eeEEeeCCcEEEE
Q psy842 14 KIAITADGTTVVC 26 (111)
Q Consensus 14 ~iavTsDG~tIVc 26 (111)
-+.-|.||++||.
T Consensus 5 yvitt~DG~~IvT 17 (62)
T 2rd1_A 5 YVMTTKNGQTIVT 17 (62)
T ss_dssp EEEEETTSCEEEE
T ss_pred eEEEeCCCcEEEc
Confidence 3455999999996
No 19
>3bdu_A Putative lipoprotein; X_RAY, NESG, Q6D8G1, structural genomics, PSI-2, protein structure initiative; 1.90A {Pectobacterium atrosepticum SCRI1043} SCOP: b.38.1.6
Probab=25.47 E-value=38 Score=21.55 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=10.2
Q ss_pred eEEeeCCcEEEEe
Q psy842 15 IAITADGTTVVCW 27 (111)
Q Consensus 15 iavTsDG~tIVcw 27 (111)
+.-|.||++||.-
T Consensus 6 vitt~DG~~IvT~ 18 (62)
T 3bdu_A 6 VLHTNDGRTIVAE 18 (62)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEEECCCcEEEcC
Confidence 4458999999963
No 20
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=25.46 E-value=26 Score=25.71 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=13.1
Q ss_pred eeEEeeCCcEEEEecCC
Q psy842 14 KIAITADGTTVVCWHPE 30 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP~ 30 (111)
.|-+|.|| .+||+|-.
T Consensus 41 DV~lT~Dg-~~Vv~HD~ 56 (238)
T 3no3_A 41 DVHLTADN-VLVVYHDN 56 (238)
T ss_dssp EEEECTTS-CEEECSSS
T ss_pred EeeEccCC-cEEEECCC
Confidence 67899999 78888854
No 21
>2rb6_A Uncharacterized protein; NESG, Q8EI81_sheon, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.50A {Shewanella oneidensis} SCOP: b.38.1.6
Probab=24.88 E-value=39 Score=21.43 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=10.1
Q ss_pred eeEEeeCCcEEEE
Q psy842 14 KIAITADGTTVVC 26 (111)
Q Consensus 14 ~iavTsDG~tIVc 26 (111)
-|.-|.||++||+
T Consensus 5 yvitT~DG~~IvT 17 (61)
T 2rb6_A 5 YIMSTKDGKMITS 17 (61)
T ss_dssp EEEEETTSCEEEE
T ss_pred EEEEeCCCcEEEc
Confidence 3445899999995
No 22
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=24.20 E-value=28 Score=25.43 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=13.3
Q ss_pred eeEEeeCCcEEEEecCC
Q psy842 14 KIAITADGTTVVCWHPE 30 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP~ 30 (111)
.|-+|.|| .+||+|-.
T Consensus 47 DV~lTkDG-~lVv~HD~ 62 (234)
T 1o1z_A 47 DVRLSKDG-KVVVSHDE 62 (234)
T ss_dssp EEEECTTS-CEEECSSS
T ss_pred EeeEecCC-CEEEEcCC
Confidence 67899999 78888864
No 23
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=23.79 E-value=29 Score=26.41 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=12.9
Q ss_pred eeEEeeCCcEEEEecCC
Q psy842 14 KIAITADGTTVVCWHPE 30 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP~ 30 (111)
.|-+|.|| .+||+|=.
T Consensus 52 DV~lTkDg-~~Vv~HD~ 67 (313)
T 3l12_A 52 DVVMTADG-VPVVTHNH 67 (313)
T ss_dssp EEEECTTS-CEEECSSS
T ss_pred EEEECCCC-CEEEECCc
Confidence 67899999 77888854
No 24
>2jn0_A Hypothetical lipoprotein YGDR; solution structure, PSI-2 target, structural genomics, protein structure initiative; NMR {Escherichia coli} SCOP: b.38.1.6 PDB: 3fif_A
Probab=22.78 E-value=39 Score=21.45 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=10.1
Q ss_pred eeEEeeCCcEEEE
Q psy842 14 KIAITADGTTVVC 26 (111)
Q Consensus 14 ~iavTsDG~tIVc 26 (111)
-+.-|.||++||+
T Consensus 5 yvitT~DG~~IvT 17 (61)
T 2jn0_A 5 YVMATKDGRMILT 17 (61)
T ss_dssp CEEEETTSCEEEB
T ss_pred EEEEeCCCcEEEc
Confidence 3445899999994
No 25
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=22.09 E-value=33 Score=25.23 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=11.7
Q ss_pred eeEEeeCCcEEEEecC
Q psy842 14 KIAITADGTTVVCWHP 29 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP 29 (111)
.|-+|.|| .+||+|=
T Consensus 44 DV~lT~Dg-~~Vv~HD 58 (252)
T 3qvq_A 44 DVMLSGDG-IPVIFHD 58 (252)
T ss_dssp EEEECTTS-CEEECCC
T ss_pred EEEECCCC-cEEEECC
Confidence 67889999 6777774
No 26
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=21.17 E-value=27 Score=25.70 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=16.7
Q ss_pred hhccccceeEEeeCCcEEEEe
Q psy842 7 RLVPLTHKIAITADGTTVVCW 27 (111)
Q Consensus 7 r~~s~~~~iavTsDG~tIVcw 27 (111)
.+...+..||+.+||+.+|+-
T Consensus 14 ~~~~~p~~va~~~~g~~~v~~ 34 (343)
T 2qe8_A 14 ELSLAPGNITLTPDGRLFLSL 34 (343)
T ss_dssp EESSCEEEEEECTTSCEEEEE
T ss_pred EcCCCcceEEECCCCCEEEEe
Confidence 344566789999999999984
No 27
>1o22_A Orphan protein TM0875; structural genomics, joint center for struct genomics, JCSG, protein structure initiative, PSI, unknown; 2.00A {Thermotoga maritima} SCOP: d.238.1.1
Probab=21.14 E-value=32 Score=25.59 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=19.2
Q ss_pred hcCCchhhhHHHHhhhhcccccccccc
Q psy842 65 FKPKKEEFVRQDLMNITFTNKHRWFPV 91 (111)
Q Consensus 65 ~k~k~~~~~~eELskmf~TTKHrWyPr 91 (111)
.|+|...-+.+|.||-||-|| .|=|-
T Consensus 132 vk~knr~e~v~~fmkyffesk-gw~pg 157 (170)
T 1o22_A 132 VKKKNRNELVEEFMKYFFESK-GWNPG 157 (170)
T ss_dssp STTCCHHHHHHHHHHHHHHHH-TCCGG
T ss_pred hhhccHHHHHHHHHHHHHhcc-CCCCC
Confidence 356665556899999999997 46553
No 28
>2a6q_A Antitoxin YEFM; YEFM, antitoxin, addiction modules, RNAse, inhibitor, toxin inhibitor/toxin complex; 2.05A {Escherichia coli} SCOP: d.306.1.1
Probab=20.83 E-value=37 Score=21.24 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=16.2
Q ss_pred hhhhhhhccccceeEEeeCCcEEE
Q psy842 2 SSLLRRLVPLTHKIAITADGTTVV 25 (111)
Q Consensus 2 ~~l~rr~~s~~~~iavTsDG~tIV 25 (111)
+.++.+...-.+.|.||.+|+-.+
T Consensus 17 ~~~~~~v~~~~epviItr~g~~~a 40 (86)
T 2a6q_A 17 SATMMKAVEDHAPILITRQNGEAC 40 (86)
T ss_dssp HHHHHHHHHHTCCEEEECTTSCEE
T ss_pred HHHHHHHHhcCCcEEEEeCCCccE
Confidence 345555555556899999998543
No 29
>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=20.04 E-value=52 Score=21.04 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=10.2
Q ss_pred eeEEeeCCcEEEE
Q psy842 14 KIAITADGTTVVC 26 (111)
Q Consensus 14 ~iavTsDG~tIVc 26 (111)
-|.-|.||++||+
T Consensus 6 yVitt~DG~~IvT 18 (64)
T 2ra2_A 6 YVMHTNDGRSIVT 18 (64)
T ss_dssp EEEEETTSCEEEC
T ss_pred EEEEeCCCcEEEc
Confidence 4556999999994
No 30
>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.01 E-value=38 Score=25.99 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=12.5
Q ss_pred eeEEeeCCcEEEEecC
Q psy842 14 KIAITADGTTVVCWHP 29 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP 29 (111)
.|-+|.|| .+||+|-
T Consensus 52 Dv~~TkDg-~~vv~HD 66 (278)
T 3i10_A 52 DIQKTKDG-QLILMHD 66 (278)
T ss_dssp EEEECTTS-CEEECSS
T ss_pred EEEECCCC-eEEEecC
Confidence 78899999 6788885
Done!