Query psy842
Match_columns 111
No_of_seqs 70 out of 72
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 18:25:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy842.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/842hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vd6a1 c.1.18.3 (A:8-224) Put 47.1 3.4 0.00025 26.7 1.3 16 14-30 35-50 (217)
2 d1ydya1 c.1.18.3 (A:29-356) Gl 45.8 3.6 0.00026 28.1 1.3 16 14-30 37-52 (328)
3 d3bdua1 b.38.1.6 (A:2-54) Unch 41.6 6.7 0.00049 22.9 1.9 13 14-26 4-16 (53)
4 d2ra2a1 b.38.1.6 (A:4-56) Unch 41.6 5.4 0.0004 23.4 1.5 13 14-26 3-15 (53)
5 d2rb6a1 b.38.1.6 (A:25-76) Unc 41.0 7 0.00051 22.7 1.9 13 14-26 4-16 (52)
6 d1zcca1 c.1.18.3 (A:1-240) Gly 40.5 5.4 0.0004 26.8 1.6 16 14-30 36-51 (240)
7 d1o1za_ c.1.18.3 (A:) Hypothet 38.5 5.5 0.0004 26.2 1.3 15 14-29 39-53 (226)
8 d1so7a_ b.68.1.1 (A:) Sialidas 32.1 12 0.00085 25.9 2.3 14 14-27 21-34 (374)
9 d2odka1 d.306.1.1 (A:1-51) Hyp 29.2 13 0.00096 20.9 1.8 24 2-26 14-37 (51)
10 d1xpja_ c.108.1.18 (A:) Hypoth 28.3 6.5 0.00047 25.7 0.3 26 14-43 3-28 (124)
11 d2rd1a1 b.38.1.6 (A:22-73) Put 25.0 19 0.0014 20.9 1.9 13 15-27 4-16 (52)
12 d2f5ka1 b.34.13.3 (A:6-88) Mor 24.0 14 0.001 22.8 1.3 16 20-37 8-23 (83)
13 d1o22a_ d.238.1.1 (A:) Hypothe 23.7 13 0.00092 25.6 1.1 26 65-91 115-140 (149)
14 d2k57a1 b.38.1.6 (A:2-53) Unch 22.9 23 0.0016 20.5 2.0 12 15-26 5-16 (52)
15 d1m8aa_ d.9.1.1 (A:) Macrophag 22.7 27 0.002 19.6 2.4 17 14-31 33-49 (61)
16 d1o7za_ d.9.1.1 (A:) IP-10/CXC 21.6 15 0.0011 21.4 1.1 19 14-32 32-51 (61)
17 d2jn0a1 b.38.1.6 (A:4-53) Hypo 21.4 21 0.0015 20.6 1.6 12 15-26 3-14 (50)
No 1
>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]}
Probab=47.10 E-value=3.4 Score=26.73 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.6
Q ss_pred eeEEeeCCcEEEEecCC
Q psy842 14 KIAITADGTTVVCWHPE 30 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP~ 30 (111)
.|-+|+|| .+||.|-.
T Consensus 35 DV~~TkDg-~~vv~HD~ 50 (217)
T d1vd6a1 35 DVWPTRDG-VFAVRHDP 50 (217)
T ss_dssp EEEECTTS-CEEECSCS
T ss_pred EEEEecCC-CEEEeccc
Confidence 68899999 88889964
No 2
>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]}
Probab=45.84 E-value=3.6 Score=28.14 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=13.8
Q ss_pred eeEEeeCCcEEEEecCC
Q psy842 14 KIAITADGTTVVCWHPE 30 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP~ 30 (111)
-|-+|.|| .+||+|-.
T Consensus 37 DV~lTkDg-~~Vv~HD~ 52 (328)
T d1ydya1 37 DLVMTKDD-NLVVLHDH 52 (328)
T ss_dssp EEEECTTS-CEEECSSS
T ss_pred eeeEccCC-cEEEECCc
Confidence 78899999 88999953
No 3
>d3bdua1 b.38.1.6 (A:2-54) Uncharacterized protein ECA1013 {Erwinia carotovora [TaxId: 554]}
Probab=41.64 E-value=6.7 Score=22.90 Aligned_cols=13 Identities=38% Similarity=0.524 Sum_probs=10.7
Q ss_pred eeEEeeCCcEEEE
Q psy842 14 KIAITADGTTVVC 26 (111)
Q Consensus 14 ~iavTsDG~tIVc 26 (111)
-|..|.||++||.
T Consensus 4 yv~~t~dG~~i~T 16 (53)
T d3bdua1 4 YVLHTNDGRTIVA 16 (53)
T ss_dssp EEEEETTSCEEEE
T ss_pred eEEEecCCcEEEe
Confidence 3567899999996
No 4
>d2ra2a1 b.38.1.6 (A:4-56) Uncharacterized protein YgdI {Salmonella typhimurium [TaxId: 90371]}
Probab=41.64 E-value=5.4 Score=23.45 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=10.6
Q ss_pred eeEEeeCCcEEEE
Q psy842 14 KIAITADGTTVVC 26 (111)
Q Consensus 14 ~iavTsDG~tIVc 26 (111)
-|.-|.||+|||+
T Consensus 3 yvm~t~DG~~IvT 15 (53)
T d2ra2a1 3 YVMHTNDGRSIVT 15 (53)
T ss_dssp EEEEETTSCEEEC
T ss_pred eEEEecCCcEEEe
Confidence 3567999999994
No 5
>d2rb6a1 b.38.1.6 (A:25-76) Uncharacterized protein SO0963 {Shewanella oneidensis [TaxId: 70863]}
Probab=40.98 E-value=7 Score=22.74 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=10.7
Q ss_pred eeEEeeCCcEEEE
Q psy842 14 KIAITADGTTVVC 26 (111)
Q Consensus 14 ~iavTsDG~tIVc 26 (111)
-|..|.||++||.
T Consensus 4 yvm~t~dG~~i~T 16 (52)
T d2rb6a1 4 YIMSTKDGKMITS 16 (52)
T ss_dssp EEEEETTSCEEEE
T ss_pred eEEEeCCCcEEEe
Confidence 3567899999995
No 6
>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]}
Probab=40.45 E-value=5.4 Score=26.84 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=13.6
Q ss_pred eeEEeeCCcEEEEecCC
Q psy842 14 KIAITADGTTVVCWHPE 30 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP~ 30 (111)
.|-+|+|| .+||+|..
T Consensus 36 Dv~~TkDg-~~Vv~HD~ 51 (240)
T d1zcca1 36 DVRESADG-VLYVIHDE 51 (240)
T ss_dssp EEEECTTC-CEEECSSS
T ss_pred EEEEecCC-CEEEeccc
Confidence 68899999 88889964
No 7
>d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]}
Probab=38.48 E-value=5.5 Score=26.23 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=12.9
Q ss_pred eeEEeeCCcEEEEecC
Q psy842 14 KIAITADGTTVVCWHP 29 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP 29 (111)
.|-+|.|| .+||+|-
T Consensus 39 Dv~~T~Dg-~~Vv~HD 53 (226)
T d1o1za_ 39 DVRLSKDG-KVVVSHD 53 (226)
T ss_dssp EEEECTTS-CEEECSS
T ss_pred EEEEccCC-CEEeecc
Confidence 68899999 7889995
No 8
>d1so7a_ b.68.1.1 (A:) Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.13 E-value=12 Score=25.89 Aligned_cols=14 Identities=0% Similarity=0.188 Sum_probs=12.5
Q ss_pred eeEEeeCCcEEEEe
Q psy842 14 KIAITADGTTVVCW 27 (111)
Q Consensus 14 ~iavTsDG~tIVcw 27 (111)
.|+.++||++||||
T Consensus 21 ~lv~~~~g~~l~A~ 34 (374)
T d1so7a_ 21 ALLYLPGQQSLLAF 34 (374)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEEEcCCCEEEEE
Confidence 67788999999999
No 9
>d2odka1 d.306.1.1 (A:1-51) Hypothetical protein NE2111 {Nitrosomonas europaea [TaxId: 915]}
Probab=29.20 E-value=13 Score=20.87 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=17.1
Q ss_pred hhhhhhhccccceeEEeeCCcEEEE
Q psy842 2 SSLLRRLVPLTHKIAITADGTTVVC 26 (111)
Q Consensus 2 ~~l~rr~~s~~~~iavTsDG~tIVc 26 (111)
|.|+++-++ .+.+.||..|+-++-
T Consensus 14 s~ll~~a~~-~epv~Itr~G~p~av 37 (51)
T d2odka1 14 SEFLDACIT-EGPQIVSRRGAEEAV 37 (51)
T ss_dssp HHHHHHHHH-TCCEEEEETTEEEEE
T ss_pred HHHHHHHhc-CCCEEEEECCeeeEE
Confidence 556766543 468999999987763
No 10
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}
Probab=28.27 E-value=6.5 Score=25.74 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=18.9
Q ss_pred eeEEeeCCcEEEEecCCCCCCcccccCCCC
Q psy842 14 KIAITADGTTVVCWHPEQPFPYEHSLPLPV 43 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP~~~fPYEhTKPIp~ 43 (111)
.|++.=|| || |.+...+ |++++|++.
T Consensus 3 ~i~~DiDG-TI-~~~~~~~--y~~~~P~~~ 28 (124)
T d1xpja_ 3 KLIVDLDG-TL-TQANTSD--YRNVLPRLD 28 (124)
T ss_dssp EEEECSTT-TT-BCCCCSC--GGGCCBCHH
T ss_pred EEEEeCCC-Ce-ECCCCCC--cCccCcCHH
Confidence 46788899 65 6665544 889999875
No 11
>d2rd1a1 b.38.1.6 (A:22-73) Putative outer membrane lipoprotein STM1585 {Salmonella typhimurium [TaxId: 90371]}
Probab=25.01 E-value=19 Score=20.92 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=10.1
Q ss_pred eEEeeCCcEEEEe
Q psy842 15 IAITADGTTVVCW 27 (111)
Q Consensus 15 iavTsDG~tIVcw 27 (111)
|.=|.||+|||..
T Consensus 4 vm~t~dGr~I~t~ 16 (52)
T d2rd1a1 4 VMTTKNGQTIVTQ 16 (52)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEEeCCCcEEEcC
Confidence 4458899999964
No 12
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.96 E-value=14 Score=22.81 Aligned_cols=16 Identities=44% Similarity=1.074 Sum_probs=12.5
Q ss_pred CCcEEEEecCCCCCCccc
Q psy842 20 DGTTVVCWHPEQPFPYEH 37 (111)
Q Consensus 20 DG~tIVcwHP~~~fPYEh 37 (111)
-|..|+|||. ++.||-
T Consensus 8 ~ge~Vlc~~~--~~lYeA 23 (83)
T d2f5ka1 8 EGERVLCFHG--PLLYEA 23 (83)
T ss_dssp TTCEEEEESS--SSEEEE
T ss_pred CCCEEEEEEC--CeeEEe
Confidence 4779999996 577874
No 13
>d1o22a_ d.238.1.1 (A:) Hypothetical protein TM0875 {Thermotoga maritima [TaxId: 2336]}
Probab=23.69 E-value=13 Score=25.56 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=19.1
Q ss_pred hcCCchhhhHHHHhhhhcccccccccc
Q psy842 65 FKPKKEEFVRQDLMNITFTNKHRWFPV 91 (111)
Q Consensus 65 ~k~k~~~~~~eELskmf~TTKHrWyPr 91 (111)
.|+|...-+.+|.||-||-|| .|=|-
T Consensus 115 vk~knr~e~v~~fmkyffesk-gw~pg 140 (149)
T d1o22a_ 115 VKKKNRNELVEEFMKYFFESK-GWNPG 140 (149)
T ss_dssp STTCCHHHHHHHHHHHHHHHH-TCCGG
T ss_pred hhhccHHHHHHHHHHHHHhcc-CCCCC
Confidence 356665556899999999987 46553
No 14
>d2k57a1 b.38.1.6 (A:2-53) Uncharacterized protein PSPPH2109 {Pseudomonas syringae [TaxId: 317]}
Probab=22.86 E-value=23 Score=20.45 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=9.9
Q ss_pred eEEeeCCcEEEE
Q psy842 15 IAITADGTTVVC 26 (111)
Q Consensus 15 iavTsDG~tIVc 26 (111)
|.-|.||++||.
T Consensus 5 v~tt~dGr~i~T 16 (52)
T d2k57a1 5 VITLNDGREIQA 16 (52)
T ss_dssp EEEESSSCEEEE
T ss_pred EEEecCCcEEEc
Confidence 556889999995
No 15
>d1m8aa_ d.9.1.1 (A:) Macrophage inflammatory protein, MIP {Human (Homo sapiens), ccl20/mip-3a [TaxId: 9606]}
Probab=22.68 E-value=27 Score=19.59 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=11.6
Q ss_pred eeEEeeCCcEEEEecCCC
Q psy842 14 KIAITADGTTVVCWHPEQ 31 (111)
Q Consensus 14 ~iavTsDG~tIVcwHP~~ 31 (111)
=|..|.+| .-||-+|+.
T Consensus 33 VIf~tk~g-~~iC~dP~~ 49 (61)
T d1m8aa_ 33 IIFHTKKK-LSVCANPKQ 49 (61)
T ss_dssp EEEEETTC-CEEEECTTS
T ss_pred EEEEECCC-CEEeCCCCh
Confidence 34556777 458999974
No 16
>d1o7za_ d.9.1.1 (A:) IP-10/CXCL10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.56 E-value=15 Score=21.44 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=14.5
Q ss_pred eeEEe-eCCcEEEEecCCCC
Q psy842 14 KIAIT-ADGTTVVCWHPEQP 32 (111)
Q Consensus 14 ~iavT-sDG~tIVcwHP~~~ 32 (111)
||.+| .+++.-||-.|+.+
T Consensus 32 EVIaTLK~ng~~vCLdP~a~ 51 (61)
T d1o7za_ 32 EIIATMKKKGEKRCLNPESK 51 (61)
T ss_dssp EEEEEETTTSCEEEECSSSH
T ss_pred EEEEEeecCCcEEecCCCCH
Confidence 88887 54558899999754
No 17
>d2jn0a1 b.38.1.6 (A:4-53) Hypothetical lipoprotein YgdR {Escherichia coli [TaxId: 562]}
Probab=21.44 E-value=21 Score=20.55 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=9.3
Q ss_pred eEEeeCCcEEEE
Q psy842 15 IAITADGTTVVC 26 (111)
Q Consensus 15 iavTsDG~tIVc 26 (111)
|.=|.||+|||.
T Consensus 3 vm~t~dG~~I~T 14 (50)
T d2jn0a1 3 VMATKDGRMILT 14 (50)
T ss_dssp EEEETTSCEEEB
T ss_pred eEEcCCCCEEEe
Confidence 345789999994
Done!