RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy842
(111 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.090
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 23/67 (34%)
Query: 59 QEIYNVFKPKKEEFVR---QDLMNITFTNKHRWFPVRKMRQKKRYFKPL----------- 104
+++Y + + ++ + L + T + +K + + L
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTT---------LDAEKVFTQGLNILEWLENPSN 224
Query: 105 IPDREYL 111
PD++YL
Sbjct: 225 TPDKDYL 231
Score = 30.4 bits (68), Expect = 0.11
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 51 SILKV--QNVQEIYNVFKPKKEEFVRQDLMNITFTN 84
SIL + N + F +K + +R++ + F
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET 1695
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 28.8 bits (65), Expect = 0.36
Identities = 8/43 (18%), Positives = 12/43 (27%)
Query: 4 LLRRLVPLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQ 46
+L P+ G V E ++P TE
Sbjct: 69 ILPAFGPVETSTQGHFGGRPVDFGVLEGAHYGVKAVPQSTTES 111
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor,
tryptophan chromophores, homodimer, COP1,
chromatin-binding protein; 1.70A {Arabidopsis thaliana}
PDB: 4dnw_A 4dnu_A 4dnv_A
Length = 406
Score = 28.0 bits (63), Expect = 0.68
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 13 HKIAITADGTTVVCW 27
H +A + G V W
Sbjct: 79 HTVAYSQSGMEVYSW 93
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei
methyltransferase; cobalamin-independent, surface
entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A
3pph_A 3ppc_A
Length = 789
Score = 27.2 bits (60), Expect = 1.4
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 73 VRQDLMNITFTNKHRW--FPVRKMRQKKRYFKPLIP 106
V++ L I R FP R QK +Y PL P
Sbjct: 429 VQERLTTINEALATRKAAFPERLTEQKAKYNLPLFP 464
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG
BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Length = 162
Score = 26.2 bits (58), Expect = 1.9
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 68 KKEEFVRQDLMNITFTNKHRWFPVRKMRQKKRYFKPLIPD 107
+ F+ +DL T ++ + Y++ +IPD
Sbjct: 114 QSMGFINEDL--STSASQALHSDWLARNCQPNYWRNVIPD 151
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 26.2 bits (57), Expect = 2.0
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 16/75 (21%)
Query: 34 PYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKEEFVRQDLMNITFTNKHRWFPVRK 93
P+E N +++ + +++ D +N T W + K
Sbjct: 170 PFE-------------NIAIELPPNEILFSENNDMDNNNDGVDELNKKCTF---WDAISK 213
Query: 94 MRQKKRYFKPLIPDR 108
+ + +FK ++
Sbjct: 214 LYYVQFFFKQAEQEQ 228
>3a98_B Engulfment and cell motility protein 1; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Length = 203
Score = 26.2 bits (57), Expect = 2.4
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 56 QNVQEIYNVFKPKKEEFVRQDLMNITFTNKHRWFP--VRKMRQKKRYFKPLIPDREYL 111
+ E+ +P+ E ++Q + + F + RQ K ++ L P+ + L
Sbjct: 7 GPILELKEKIQPEILELIKQQ--RLNRLVEGTCFRKLNARRRQDKFWYCRLSPNHKVL 62
>2bii_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum,
nitrate assimilation, oxidoreductase; HET: MTV; 1.70A
{Pichia angusta}
Length = 424
Score = 26.3 bits (58), Expect = 2.7
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 13 HKIAITADGTTVVCWHPEQP 32
+++AI +G ++ HP
Sbjct: 373 YRVAIIREGESLRFEHPVVA 392
>2bih_A Nitrate reductase [NADPH]; flavoprotein, nitrate assimilation,
oxidoreductase; HET: MTV; 2.60A {Pichia angusta}
Length = 474
Score = 25.6 bits (56), Expect = 4.2
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 13 HKIAITADGTTVVCWHPEQP 32
+++AI +G ++ HP
Sbjct: 423 YRVAIIREGESLRFEHPVVA 442
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; methionine, synthase,
methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis
thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A
1u22_A*
Length = 765
Score = 25.2 bits (55), Expect = 5.9
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 73 VRQDLMNITFTNKHRW--FPVRKMRQKKRYFKPLIP 106
V++ + ++ R R Q+K+ P++P
Sbjct: 398 VQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILP 433
>1onq_A T-cell surface glycoprotein CD1A; protein-glycolipid complex, beta
sheet platform,, immune SYS; HET: NAG FUC SLF; 2.15A
{Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1xz0_A*
Length = 283
Score = 24.5 bits (54), Expect = 9.3
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 2 SSLLRRLVP---LTHKIAITADGTTVVCW 27
+ L R++ P L+H + +VC
Sbjct: 179 AHLQRQVKPEAWLSHGPSPGPGHLQLVCH 207
>2h26_A CD1B antigen, T-cell surface glycoprotein CD1B; lipid, endogenous
ligand, phosphatidylcholine, MHC, antigen presentation,
immune system; HET: NAG FUC 6PL 6UL; 1.80A {Homo
sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3t8x_A* 1gzq_A*
1gzp_A* 1uqs_A* 3l9r_A*
Length = 286
Score = 24.5 bits (54), Expect = 9.7
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 2 SSLLRRLVP---LTHKIAITADGTTVVCW 27
+ L R++ P L+ + +VC
Sbjct: 179 ADLQRQVKPEAWLSSGPSPGPGRLQLVCH 207
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.421
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,693,222
Number of extensions: 83308
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 28
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)