BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8420
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L+ GADVNA D +GNTPLH+ A Y+ I+ L ++GA ++ +N G T
Sbjct: 31 RILMANGADVNANDRKGNTPLHLAADYDHL--------EIVEVLLKHGADVNAHDNDGST 82
Query: 139 PIQ 141
P+
Sbjct: 83 PLH 85
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 17/83 (20%)
Query: 23 SEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI 82
+++E RI L+ + ++ R+ + LHL +Y+ ++L+
Sbjct: 25 GQDDEVRI--LMANGADVNANDRKGNTPLHLAADYDH---------------LEIVEVLL 67
Query: 83 RCGADVNAKDYQGNTPLHIIATY 105
+ GADVNA D G+TPLH+ A +
Sbjct: 68 KHGADVNAHDNDGSTPLHLAALF 90
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L+ GADVNA+D G TPLH+ A F I+ L +NGA ++ V++ G+T
Sbjct: 31 RILMANGADVNAEDASGWTPLHLAA--------FNGHLEIVEVLLKNGADVNAVDHAGMT 82
Query: 139 PIQ 141
P++
Sbjct: 83 PLR 85
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATY 105
++L++ GADVNA D +G+TPLH+ A +
Sbjct: 97 EVLLKNGADVNANDMEGHTPLHLAAMF 123
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L++ GADVNA D+ G TPL + A + H I++ L +NGA ++ + +G
Sbjct: 64 EVLLKNGADVNAVDHAGMTPLRLAALFG---------HLEIVEVLLKNGADVNANDMEGH 114
Query: 138 TPIQ 141
TP+
Sbjct: 115 TPLH 118
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
KLL+ GADVNAKD G TPLH+ A L + L L E GA ++ + G T
Sbjct: 19 KLLLEAGADVNAKDKNGRTPLHLAARN-------GHLEVVKL-LLEAGADVNAKDKNGRT 70
Query: 139 PIQ-ATTTG---VADLILRTLTKINLK 161
P+ A G V L+L +N K
Sbjct: 71 PLHLAARNGHLEVVKLLLEAGADVNAK 97
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIA 103
KLL+ GADVNAKD G TPLH+ A
Sbjct: 85 KLLLEAGADVNAKDKNGRTPLHLAA 109
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L GADVNA DY G+TPLH+ A H I++ L +NGA ++ N G
Sbjct: 31 RILTANGADVNANDYWGHTPLHLAAMLG---------HLEIVEVLLKNGADVNATGNTGR 81
Query: 138 TPIQ 141
TP+
Sbjct: 82 TPLH 85
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIA 103
++L++ GADVNA G TPLH+ A
Sbjct: 64 EVLLKNGADVNATGNTGRTPLHLAA 88
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 18/106 (16%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
KLLI GADVNAKD G TPLH A + I+ L GA ++ ++ G T
Sbjct: 54 KLLISKGADVNAKDSDGRTPLHYAAK--------EGHKEIVKLLISKGADVNAKDSDGRT 105
Query: 139 PIQ-ATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDL 183
P+ A G +++ K L +K N G P DL
Sbjct: 106 PLHYAAKEGHKEIV---------KLLISKGADVNTSDSDGRTPLDL 142
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
K LI GADVNA D G TPLH A + I+ L GA ++ ++ G T
Sbjct: 21 KDLIENGADVNASDSDGRTPLHYAAK--------EGHKEIVKLLISKGADVNAKDSDGRT 72
Query: 139 PIQ 141
P+
Sbjct: 73 PLH 75
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L++ GADVNA D G+TPLH+ A Y H I++ L +NGA ++ + G
Sbjct: 64 EVLLKHGADVNAADKMGDTPLHLAALYG---------HLEIVEVLLKNGADVNATDTYGF 114
Query: 138 TPIQ 141
TP+
Sbjct: 115 TPLH 118
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L+ GADVNA+D G TPLH+ A + I+ L ++GA ++ + G T
Sbjct: 31 RILMANGADVNAEDDSGKTPLHLAA--------IKGHLEIVEVLLKHGADVNAADKMGDT 82
Query: 139 PIQ 141
P+
Sbjct: 83 PLH 85
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIA 103
++L++ GADVNA D G TPLH+ A
Sbjct: 97 EVLLKNGADVNATDTYGFTPLHLAA 121
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 26/113 (23%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L+ GADVNA D+ G+TPLH+ A +T H I++ L + GA ++ +N G
Sbjct: 31 RILMANGADVNATDWLGHTPLHLAA---------KTGHLEIVEVLLKYGADVNAWDNYGA 81
Query: 138 TPIQ-ATTTG---VADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESF 186
TP+ A G + +++L+ +N K Y+G P L ++
Sbjct: 82 TPLHLAADNGHLEIVEVLLKHGADVNAK------------DYEGFTPLHLAAY 122
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
KLL+ GADVNAKD G TPLH+ A L + L L E GA ++ + G T
Sbjct: 19 KLLLEAGADVNAKDKNGRTPLHLAARN-------GHLEVVKL-LLEAGADVNAKDKNGRT 70
Query: 139 PIQ 141
P+
Sbjct: 71 PLH 73
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIA 103
KLL+ GADVNAKD G TPLH+ A
Sbjct: 52 KLLLEAGADVNAKDKNGRTPLHLAA 76
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 10/64 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L+ GADVNA+D+ G TPLH+ A + H I++ L +NGA ++ ++ G+
Sbjct: 31 RILMANGADVNARDFTGWTPLHLAAHFG---------HLEIVEVLLKNGADVNAKDSLGV 81
Query: 138 TPIQ 141
TP+
Sbjct: 82 TPLH 85
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 14/96 (14%)
Query: 69 VCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGA 127
F ++L++ GADVNAKD G TPLH+ A + H I++ L +NGA
Sbjct: 54 AAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAA---------RRGHLEIVEVLLKNGA 104
Query: 128 HMDTVNNKGLTPIQ-ATTTG---VADLILRTLTKIN 159
++ ++ G TP+ A G + +++L+ +N
Sbjct: 105 DVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L+ GAD NA D+ G TPLH+ A A+ + + ++ NGA ++ V+ G T
Sbjct: 19 RILMANGADANAYDHYGRTPLHMAA----AVGHLEIVEVLL----RNGADVNAVDTNGTT 70
Query: 139 PIQ-ATTTG---VADLILRTLTKINLK 161
P+ A + G + +++L+ +N K
Sbjct: 71 PLHLAASLGHLEIVEVLLKYGADVNAK 97
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L+R GADVNA D G TPLH+ A+ I+ L + GA ++ + G+T
Sbjct: 52 EVLLRNGADVNAVDTNGTTPLHLAASLGHL--------EIVEVLLKYGADVNAKDATGIT 103
Query: 139 PI 140
P+
Sbjct: 104 PL 105
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 61 VDTFHTNDVCKFPCAAT------TKLLIRCGADVNAKDYQGNTPLHIIATY 105
V+ TN AA+ ++L++ GADVNAKD G TPL++ A +
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYW 111
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 72 FPCAAT----TKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA 127
+ C+A + L++ G VN KD G +PLHI A+ R I+ L GA
Sbjct: 46 WACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR--------DEIVKALLVKGA 97
Query: 128 HMDTVNNKGLTPIQ 141
H++ VN G TP+
Sbjct: 98 HVNAVNQNGCTPLH 111
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 86 ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTT 145
A N +D +GNTPLH+ ER + + + L T GA + N + TP+Q
Sbjct: 163 ASTNIQDTEGNTPLHLACDEER-VEEAKFLVT-------QGASIYIENKEEKTPLQVAKG 214
Query: 146 GVADLILRTLTK 157
G+ LIL+ L +
Sbjct: 215 GLG-LILKRLAE 225
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 19/83 (22%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
K L+ GA VNA + G TPLH A+ R H I + L E GA+ D ++ T
Sbjct: 90 KALLVKGAHVNAVNQNGCTPLHYAASKNR--------HEIAVMLLEGGANPDAKDHYDAT 141
Query: 139 PIQATTTGVADLILRTLTKINLK 161
+ R K NLK
Sbjct: 142 AMH-----------RAAAKGNLK 153
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 20/107 (18%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
KLLI GADVNAKD G TPLH A + H ++ L GA ++ ++ G
Sbjct: 54 KLLISKGADVNAKDSDGRTPLHHAA---------ENGHKEVVKLLISKGADVNAKDSDGR 104
Query: 138 TPI-QATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDL 183
TP+ A G +++ K L +K N G P DL
Sbjct: 105 TPLHHAAENGHKEVV---------KLLISKGADVNTSDSDGRTPLDL 142
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
K LI GADVNA D G TPLH A + H ++ L GA ++ ++ G
Sbjct: 21 KDLIENGADVNASDSDGRTPLHHAA---------ENGHKEVVKLLISKGADVNAKDSDGR 71
Query: 138 TPI-QATTTG---VADLILRTLTKINLK 161
TP+ A G V L++ +N K
Sbjct: 72 TPLHHAAENGHKEVVKLLISKGADVNAK 99
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 10/64 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L++ GADVNA D G+TPLH+ A + H I++ L +NGA ++ ++ G+
Sbjct: 64 EVLLKNGADVNAYDTLGSTPLHLAAHFG---------HLEIVEVLLKNGADVNAKDDNGI 114
Query: 138 TPIQ 141
TP+
Sbjct: 115 TPLH 118
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 14/88 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L+ GADVNA D G TPLH+ A + H I++ L +NGA ++ + G
Sbjct: 31 RILMANGADVNAADVVGWTPLHLAAYWG---------HLEIVEVLLKNGADVNAYDTLGS 81
Query: 138 TPIQ-ATTTG---VADLILRTLTKINLK 161
TP+ A G + +++L+ +N K
Sbjct: 82 TPLHLAAHFGHLEIVEVLLKNGADVNAK 109
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 69 VCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIAT 104
F ++L++ GADVNAKD G TPLH+ A
Sbjct: 87 AAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAAN 122
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L++ GADV+A D G TPLH+ A + I+ L +NGA ++ +++ G+T
Sbjct: 64 EVLLKHGADVDASDVFGYTPLHLAAYWGHL--------EIVEVLLKNGADVNAMDSDGMT 115
Query: 139 PIQ 141
P+
Sbjct: 116 PLH 118
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L+ GADVNA D G TPLH+ A + I+ L ++GA +D + G T
Sbjct: 31 RILMANGADVNAADNTGTTPLHLAA--------YSGHLEIVEVLLKHGADVDASDVFGYT 82
Query: 139 PIQ 141
P+
Sbjct: 83 PLH 85
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATY 105
++L++ GADVNA D G TPLH+ A +
Sbjct: 97 EVLLKNGADVNAMDSDGMTPLHLAAKW 123
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L+ GADVNA D+ G TPLH+ A + I+ L +NGA ++ ++ G+T
Sbjct: 31 RILMANGADVNASDHVGWTPLHLAAYFGHL--------EIVEVLLKNGADVNADDSLGVT 82
Query: 139 PIQ-ATTTG---VADLILRTLTKIN 159
P+ A G V +++L+ +N
Sbjct: 83 PLHLAADRGHLEVVEVLLKNGADVN 107
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIAT 104
++L++ GADVNA D+ G TPLH+ A
Sbjct: 97 EVLLKNGADVNANDHNGFTPLHLAAN 122
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 78 TKLLIRCGADVNAKDYQGNTPLHIIA 103
++L++ GADVNA DYQG TPLH+ A
Sbjct: 96 VEVLLKYGADVNAMDYQGYTPLHLAA 121
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L++ ADVNA D G TPLH+ A ++ I+ L + GA ++ ++ +G T
Sbjct: 64 EVLLKYAADVNASDKSGWTPLHLAA--------YRGHLEIVEVLLKYGADVNAMDYQGYT 115
Query: 139 PIQ 141
P+
Sbjct: 116 PLH 118
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 78 TKLLIRCGADVNAKDYQGNTPLHII 102
++L+ GADVNA D+ G TPLH++
Sbjct: 30 VRILMANGADVNANDWFGITPLHLV 54
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L++ GADVNAKD G TPLH+ A + H I++ L + GA ++ + G
Sbjct: 52 EVLLKAGADVNAKDKDGYTPLHLAA---------REGHLEIVEVLLKAGADVNAKDKDGY 102
Query: 138 TPIQ-ATTTG---VADLILRTLTKIN 159
TP+ A G + +++L+ +N
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGADVN 128
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 14/88 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L+ GADVNAKD G TPLH+ A + H I++ L + GA ++ + G
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAA---------REGHLEIVEVLLKAGADVNAKDKDGY 69
Query: 138 TPIQ-ATTTG---VADLILRTLTKINLK 161
TP+ A G + +++L+ +N K
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVNAK 97
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 79 KLLIRCGADVNAKDYQGNTPL 99
++L++ GADVNA+D G TP
Sbjct: 118 EVLLKAGADVNAQDKFGKTPF 138
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L+ GADVNA D G TPLH+ ATY I+ L ++GA ++ ++ G T
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHL--------EIVEVLLKHGADVNAIDIXGST 82
Query: 139 PIQ 141
P+
Sbjct: 83 PLH 85
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L++ GADVNA D G+TPLH+ A I + + ++ ++GA ++ V+ G T
Sbjct: 64 EVLLKHGADVNAIDIXGSTPLHLAAL----IGHLEIVEVLL----KHGADVNAVDTWGDT 115
Query: 139 PIQ 141
P+
Sbjct: 116 PLH 118
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIA 103
++L++ GADVNA D G+TPLH+ A
Sbjct: 97 EVLLKHGADVNAVDTWGDTPLHLAA 121
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L++ GADVNAKD G TPLH+ A + H I++ L + GA ++ + G
Sbjct: 52 EVLLKAGADVNAKDKDGYTPLHLAA---------REGHLEIVEVLLKAGADVNAKDKDGY 102
Query: 138 TPIQ-ATTTG---VADLILRTLTKIN 159
TP+ A G + +++L+ +N
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGADVN 128
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 14/88 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L+ GADVNAKD G TPLH+ A + H I++ L + GA ++ + G
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAA---------REGHLEIVEVLLKAGADVNAKDKDGY 69
Query: 138 TPIQ-ATTTG---VADLILRTLTKINLK 161
TP+ A G + +++L+ +N K
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVNAK 97
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
KLL+ GAD NAKD G TPLH+ A + H ++ L GA +T ++ G
Sbjct: 87 KLLLSQGADPNAKDSDGKTPLHLAA---------ENGHKEVVKLLLSQGADPNTSDSDGR 137
Query: 138 TPI 140
TP+
Sbjct: 138 TPL 140
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIA 103
KLL+ GAD NAKD G TPLH+ A
Sbjct: 54 KLLLSQGADPNAKDSDGKTPLHLAA 78
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIA 103
K L+ GADVNA D G TPLH+ A
Sbjct: 21 KDLLENGADVNASDSDGKTPLHLAA 45
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L+ GADVNA D G TPLH+ ATY I+ L ++GA ++ ++ G T
Sbjct: 31 RILMANGADVNATDASGLTPLHLAATYGHL--------EIVEVLLKHGADVNAIDIMGST 82
Query: 139 PIQ 141
P+
Sbjct: 83 PLH 85
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L++ GADVNA D G+TPLH+ A I + + ++ ++GA ++ V+ G T
Sbjct: 64 EVLLKHGADVNAIDIMGSTPLHLAAL----IGHLEIVEVLL----KHGADVNAVDTWGDT 115
Query: 139 PIQ 141
P+
Sbjct: 116 PLH 118
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIA 103
++L++ GADVNA D G+TPLH+ A
Sbjct: 97 EVLLKHGADVNAVDTWGDTPLHLAA 121
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L++ GADVNAKD G TPLH+ A + H I++ L + GA ++ + G
Sbjct: 64 EVLLKAGADVNAKDKDGYTPLHLAA---------REGHLEIVEVLLKAGADVNAKDKDGY 114
Query: 138 TPIQ-ATTTG---VADLILRTLTKIN 159
TP+ A G + +++L+ +N
Sbjct: 115 TPLHLAAREGHLEIVEVLLKAGADVN 140
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 14/88 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L+ GADVNAKD G TPLH+ A + H I++ L + GA ++ + G
Sbjct: 31 RILMANGADVNAKDKDGYTPLHLAA---------REGHLEIVEVLLKAGADVNAKDKDGY 81
Query: 138 TPIQ-ATTTG---VADLILRTLTKINLK 161
TP+ A G + +++L+ +N K
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGADVNAK 109
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 72 FPCAAT----TKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA 127
+ C+A + L++ G VN KD G +PLHI A+ R I+ L GA
Sbjct: 47 WACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR--------DEIVKALLGKGA 98
Query: 128 HMDTVNNKGLTPIQ 141
++ VN G TP+
Sbjct: 99 QVNAVNQNGCTPLH 112
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDT 131
K L+ GA VNA + G TPLH A+ R H I + L E GA+ D
Sbjct: 91 KALLGKGAQVNAVNQNGCTPLHYAASKNR--------HEIAVMLLEGGANPDA 135
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 86 ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTT 145
A N +D +GNTPLH+ ER + + + L GA + N + TP+Q
Sbjct: 164 ASTNIQDTEGNTPLHLACDEER-VEEAKL-------LVSQGASIYIENKEEKTPLQVAKG 215
Query: 146 GVADLILRTLTK 157
G+ LIL+ + +
Sbjct: 216 GLG-LILKRMVE 226
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 72 FPCAAT----TKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA 127
+ C+A + L++ G VN KD G +PLHI A+ A D I+ L GA
Sbjct: 46 WACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS---AGXD-----EIVKALLVKGA 97
Query: 128 HMDTVNNKGLTPIQ 141
H++ VN G TP+
Sbjct: 98 HVNAVNQNGCTPLH 111
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 86 ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTT 145
A N +D +GNTPLH+ ER + + + L T GA + N + TP+Q
Sbjct: 163 ASTNIQDTEGNTPLHLACDEER-VEEAKFLVT-------QGASIYIENKEEKTPLQVAKG 214
Query: 146 GVADLILRTLTK 157
G+ LIL+ L +
Sbjct: 215 GLG-LILKRLAE 225
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 19/83 (22%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
K L+ GA VNA + G TPLH A+ R H I + L E GA+ D ++ T
Sbjct: 90 KALLVKGAHVNAVNQNGCTPLHYAASKNR--------HEIAVMLLEGGANPDAKDHYDAT 141
Query: 139 PIQATTTGVADLILRTLTKINLK 161
+ R K NLK
Sbjct: 142 AMH-----------RAAAKGNLK 153
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 72 FPCAAT----TKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA 127
+ C+A + L++ G VN KD G +PLHI A+ R I+ L GA
Sbjct: 46 WACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR--------DEIVKALLGKGA 97
Query: 128 HMDTVNNKGLTPIQ 141
++ VN G TP+
Sbjct: 98 QVNAVNQNGCTPLH 111
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDT 131
K L+ GA VNA + G TPLH A+ R H I + L E GA+ D
Sbjct: 90 KALLGKGAQVNAVNQNGCTPLHYAASKNR--------HEIAVMLLEGGANPDA 134
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 86 ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTT 145
A N +D +GNTPLH+ ER + + + L GA + N + TP+Q
Sbjct: 163 ASTNIQDTEGNTPLHLACDEER-VEEAKL-------LVSQGASIYIENKEEKTPLQVAKG 214
Query: 146 GVADLILRTLTK 157
G+ LIL+ + +
Sbjct: 215 GLG-LILKRMVE 225
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
KLL+ GAD NAKD G TPLH A + H I+ L GA + ++ G
Sbjct: 54 KLLLSKGADPNAKDSDGRTPLHYAA---------ENGHKEIVKLLLSKGADPNAKDSDGR 104
Query: 138 TPIQ-ATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDL 183
TP+ A G +++ K L +K N G P DL
Sbjct: 105 TPLHYAAENGHKEIV---------KLLLSKGADPNTSDSDGRTPLDL 142
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
K L+ GAD NA D G TPLH A + H I+ L GA + ++ G
Sbjct: 21 KDLLENGADPNASDSDGRTPLHYAA---------ENGHKEIVKLLLSKGADPNAKDSDGR 71
Query: 138 TPIQ-ATTTGVADLILRTLTK 157
TP+ A G +++ L+K
Sbjct: 72 TPLHYAAENGHKEIVKLLLSK 92
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L+ GADVNA+D G+TPLH+ A + H I++ L +NGA ++ ++ G
Sbjct: 31 RILMANGADVNAEDTYGDTPLHLAA---------RVGHLEIVEVLLKNGADVNALDFSGS 81
Query: 138 TPIQ 141
TP+
Sbjct: 82 TPLH 85
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIA 103
++L++ GADVNA D+ G+TPLH+ A
Sbjct: 64 EVLLKNGADVNALDFSGSTPLHLAA 88
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 42 VASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT------KLLIRCGADVNAKDYQG 95
A R + ++ + + Y V+ T AA T ++L++ GADVNA+D G
Sbjct: 87 AAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFG 146
Query: 96 NTPLHI 101
T I
Sbjct: 147 KTAFDI 152
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L+ GADVNA D QG+TPLH+ A I+ L ++GA ++ + G T
Sbjct: 31 RILMANGADVNAHDDQGSTPLHLAAWIGHP--------EIVEVLLKHGADVNARDTDGWT 82
Query: 139 PIQ 141
P+
Sbjct: 83 PLH 85
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 10/64 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L++ GADVNA+D G TPLH+ A H I++ L + GA ++ + GL
Sbjct: 64 EVLLKHGADVNARDTDGWTPLHLAA---------DNGHLEIVEVLLKYGADVNAQDAYGL 114
Query: 138 TPIQ 141
TP+
Sbjct: 115 TPLH 118
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIA 103
++L++ GADVNA+D G TPLH+ A
Sbjct: 97 EVLLKYGADVNAQDAYGLTPLHLAA 121
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L++ GADVNA D G TPLH+ A T H I++ L ++GA ++ +N G
Sbjct: 64 EVLLKNGADVNASDLTGITPLHLAAA---------TGHLEIVEVLLKHGADVNAYDNDGH 114
Query: 138 TPIQ 141
TP+
Sbjct: 115 TPLH 118
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L+ GADVNA D G TPLH+ A+ H I++ L +NGA ++ + G+
Sbjct: 31 RILMANGADVNATDNDGYTPLHLAAS---------NGHLEIVEVLLKNGADVNASDLTGI 81
Query: 138 TPIQ-ATTTG---VADLILRTLTKIN 159
TP+ A TG + +++L+ +N
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGADVN 107
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATY 105
++L++ GADVNA D G+TPLH+ A Y
Sbjct: 97 EVLLKHGADVNAYDNDGHTPLHLAAKY 123
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L+ GADVNA D G TPLH+ A + I+ L +NGA ++ ++ G+T
Sbjct: 23 RILMANGADVNATDDNGLTPLHLAAANGQL--------EIVEVLLKNGADVNASDSAGIT 74
Query: 139 PI 140
P+
Sbjct: 75 PL 76
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L++ GADVNA D G TPLH +A Y+ + I+ L ++GA ++ + G T
Sbjct: 56 EVLLKNGADVNASDSAGITPLH-LAAYDGHLE-------IVEVLLKHGADVNAYDRAGWT 107
Query: 139 PI 140
P+
Sbjct: 108 PL 109
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 78 TKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV----N 133
+LLI GAD+ A+D GNT LHI+ Q ++ ++L + G H+ ++ N
Sbjct: 137 VRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQ-MYNLLLS-YDGGDHLKSLELVPN 194
Query: 134 NKGLTPIQ 141
N+GLTP +
Sbjct: 195 NQGLTPFK 202
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++LI GADVNA D G TPLH+ A + H I++ L ++GA +D + G
Sbjct: 31 RILIANGADVNAVDNTGLTPLHLAAV---------SGHLEIVEVLLKHGADVDAADVYGF 81
Query: 138 TPIQ-ATTTG---VADLILRTLTKIN 159
TP+ A TG + +++L+ +N
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKYGADVN 107
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIA 103
++L++ GADVNA D G+TPLH+ A
Sbjct: 97 EVLLKYGADVNAFDMTGSTPLHLAA 121
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIAT 104
++L++ GADVNA+D G TPLH+ AT
Sbjct: 64 EVLLKHGADVNARDIWGRTPLHLAAT 89
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L+ GADVNA D G TPLH+ A + H I++ L ++GA ++ + G
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAA---------KRGHLEIVEVLLKHGADVNARDIWGR 81
Query: 138 TPIQ-ATTTG 146
TP+ A T G
Sbjct: 82 TPLHLAATVG 91
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 56 NYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTL 115
N + T +D + T K+L+ GADVN D G P+H+ Q
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA---------VQEG 118
Query: 116 HTIILDLTENGAHMDTVNNKGLTPIQ-ATTTGVADLI 151
HT ++ + + + +GLTP++ A G DL+
Sbjct: 119 HTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLV 155
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 56 NYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTL 115
N + T +D + T K+L+ GADVN D G P+H+ Q
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA---------VQEG 112
Query: 116 HTIILDLTENGAHMDTVNNKGLTPIQ-ATTTGVADLI 151
HT ++ + + + +GLTP++ A G DL+
Sbjct: 113 HTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLV 149
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L+ GADVNAKD G TPL++ + H I++ L +NGA ++ V+ G
Sbjct: 31 RILMANGADVNAKDEYGLTPLYLATAHG---------HLEIVEVLLKNGADVNAVDAIGF 81
Query: 138 TPIQ-ATTTG---VADLILRTLTKIN 159
TP+ A G +A+++L+ +N
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGADVN 107
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 78 TKLLIRCGADVNAKDYQGNTPLHIIATY 105
++L++ GADVNA D G TPLH++A Y
Sbjct: 63 VEVLLKNGADVNAIDAIGETPLHLVAMY 90
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 10/65 (15%)
Query: 78 TKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKG 136
++L+ GADVNA+D G TPLH+ A + H I++ L +NGA ++ ++ G
Sbjct: 30 VRILMANGADVNAEDKVGLTPLHLAAMND---------HLEIVEVLLKNGADVNAIDAIG 80
Query: 137 LTPIQ 141
TP+
Sbjct: 81 ETPLH 85
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 68 DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA 127
+ K A K L+ GADVNA+ GNTPLH+ A A I+ L GA
Sbjct: 15 NAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHA--------EIVKLLLAKGA 66
Query: 128 HMDTVNNKGLTP 139
++ + G TP
Sbjct: 67 DVNARSKDGNTP 78
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 18/87 (20%)
Query: 15 LTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPC 74
L KN EE + KL+ ++ S+ + LHL K
Sbjct: 13 LHNAAKNGHAEE---VKKLLSKGADVNARSKDGNTPLHLA---------------AKNGH 54
Query: 75 AATTKLLIRCGADVNAKDYQGNTPLHI 101
A KLL+ GADVNA+ GNTP H+
Sbjct: 55 AEIVKLLLAKGADVNARSKDGNTPEHL 81
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIAT 104
++L++ GADVNA D G TPLH+ AT
Sbjct: 64 EVLLKHGADVNASDSWGRTPLHLAAT 89
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 11/70 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L+ GADVNA D G TPLH+ A + H I++ L ++GA ++ ++ G
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAA---------KRGHLEIVEVLLKHGADVNASDSWGR 81
Query: 138 TPIQ-ATTTG 146
TP+ A T G
Sbjct: 82 TPLHLAATVG 91
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIAT 104
++L++ GADVNA D G TPLH+ AT
Sbjct: 64 EVLLKHGADVNASDIWGRTPLHLAAT 89
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGL 137
++L+ GADVNA D G TPLH+ A + H I++ L ++GA ++ + G
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAA---------KRGHLEIVEVLLKHGADVNASDIWGR 81
Query: 138 TPIQ-ATTTG 146
TP+ A T G
Sbjct: 82 TPLHLAATVG 91
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 16/66 (24%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTE----NGAHMDTVNN 134
K L+ GA++N D +G PLH A+ LD+ E GAH+ VN+
Sbjct: 90 KFLVENGANINQPDNEGWIPLHAAAS------------CGYLDIAEYLISQGAHVGAVNS 137
Query: 135 KGLTPI 140
+G TP+
Sbjct: 138 EGDTPL 143
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 21/113 (18%)
Query: 61 VDTFHTNDVCKFPCAATT-------------KLLIRCGADVNAKDYQGNTPLHIIATYER 107
+++ H NDV T KLLI+ DVN KDY G TPLH A + +
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244
Query: 108 AISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKINL 160
L EN M+ VN G T + + K NL
Sbjct: 245 --------EEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPI 140
L+ GAD+N + G T LH + I D + + L ENGA+++ +N+G P+
Sbjct: 59 LLERGADINYANVDGLTALH-----QACIDDNVDM---VKFLVENGANINQPDNEGWIPL 110
Query: 141 QATTT 145
A +
Sbjct: 111 HAAAS 115
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 78 TKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKG 136
++L+ GADVNA D G TPLH+ A Q H I++ L + GA ++ +N G
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAA---------QLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 137 LTPIQ 141
+TP+
Sbjct: 81 ITPLH 85
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 78 TKLLIRCGADVNAKDYQGNTPLHIIA 103
++L++ GADVNA+D G TPLH+ A
Sbjct: 63 VEVLLKYGADVNAEDNFGITPLHLAA 88
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIA 103
++L+ GADVNAKD G TPLH+ A
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAA 43
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 78 TKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGL 137
+LL+R GA+VN K+ TPLH+ A ERA +D + L ++GA M+ +++ G
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAA--ERAHNDVMEV------LHKHGAKMNALDSLGQ 281
Query: 138 TPIQ 141
T +
Sbjct: 282 TALH 285
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATY 105
+LL++ GADV+AKD G PLH +Y
Sbjct: 75 QLLLQHGADVHAKDKGGLVPLHNACSY 101
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 67 NDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYER 107
++ C + T+LL++ GA VNA D TPLH A+ R
Sbjct: 96 HNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR 136
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 80 LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
LL + +A D + +TPLH+ A Y R I+ L ++GA + + GL P
Sbjct: 43 LLTPLNVNCHASDGRKSTPLHLAAGYNRV--------RIVQLLLQHGADVHAKDKGGLVP 94
Query: 140 IQ-ATTTG---VADLILRTLTKIN 159
+ A + G V +L+L+ +N
Sbjct: 95 LHNACSYGHYEVTELLLKHGACVN 118
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
K L++ ADVNAK G +PLH A ++ +D TL L +NGA + V++ G T
Sbjct: 328 KFLLQHQADVNAKTKLGYSPLHQAA--QQGHTDIVTL------LLKNGASPNEVSSDGTT 379
Query: 139 PI 140
P+
Sbjct: 380 PL 381
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 78 TKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGL 137
+ L++ G NA+ QG TPLH+ A A + ++L NG + N GL
Sbjct: 228 ARSLLQYGGSANAESVQGVTPLHLAAQEGHA-----EMVALLLSKQANG---NLGNKSGL 279
Query: 138 TPI----QATTTGVADLILR 153
TP+ Q VAD++++
Sbjct: 280 TPLHLVAQEGHVPVADVLIK 299
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
KLL+ G ++ + G TPLHI A + + L + G + + +G+T
Sbjct: 196 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQV--------EVARSLLQYGGSANAESVQGVT 247
Query: 139 PIQ-ATTTGVADLILRTLTK 157
P+ A G A+++ L+K
Sbjct: 248 PLHLAAQEGHAEMVALLLSK 267
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 18/97 (18%)
Query: 67 NDVCKFPCAA------TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIIL 120
+D CAA KLL+ A+ N G+TPLHI A +L
Sbjct: 79 DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV--------ETVL 130
Query: 121 DLTENGAHMDTVNNKGLTPIQ-ATTTG---VADLILR 153
L E A + KG TP+ A G VA+L+L
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 40 LSVASRQNQ-SLLHLCVNYETPVDTFHTNDVCKFPCAAT------TKLLIRCGADVNAKD 92
L +A++QNQ + + Y + V AA LL+ A+ N +
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275
Query: 93 YQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGLTPIQATT 144
G TPLH++A Q H + D L ++G +D G TP+ +
Sbjct: 276 KSGLTPLHLVA---------QEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS 319
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 78 TKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKG 136
K L++ A VNAK TPLH A + HT ++ L EN A+ + G
Sbjct: 63 AKYLLQNKAKVNAKAKDDQTPLHCAA---------RIGHTNMVKLLLENNANPNLATTAG 113
Query: 137 LTPIQ-ATTTGVADLILRTLTK-INLKCLAAKVITQNNITYK 176
TP+ A G + +L L K + C+ K T ++ K
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAK 155
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 23/126 (18%)
Query: 33 LVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKD 92
L+ +++V +R + + LHL ++ H + V K L++ AD+NA +
Sbjct: 58 LIMRGARINVMNRGDDTPLHLAASHG------HRDIVQK---------LLQYKADINAVN 102
Query: 93 YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLIL 152
GN PLH F + DL NGA + N G P+ + +L+
Sbjct: 103 EHGNVPLHYAC--------FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLR 154
Query: 153 RTLTKI 158
K+
Sbjct: 155 ERAEKM 160
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 69 VCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH 128
C+ +A ++LI GA +N + +TPLH+ A++ I+ L + A
Sbjct: 46 ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH--------RDIVQKLLQYKAD 97
Query: 129 MDTVNNKGLTPIQ 141
++ VN G P+
Sbjct: 98 INAVNEHGNVPLH 110
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 23/126 (18%)
Query: 33 LVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKD 92
L+ +++V +R + + LHL ++ H + V K L++ AD+NA +
Sbjct: 53 LIMRGARINVMNRGDDTPLHLAASHG------HRDIVQK---------LLQYKADINAVN 97
Query: 93 YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLIL 152
GN PLH F + DL NGA + N G P+ + +L+
Sbjct: 98 EHGNVPLHYAC--------FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLR 149
Query: 153 RTLTKI 158
K+
Sbjct: 150 ERAEKM 155
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 69 VCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH 128
C+ +A ++LI GA +N + +TPLH+ A++ I+ L + A
Sbjct: 41 ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH--------RDIVQKLLQYKAD 92
Query: 129 MDTVNNKGLTPIQATTTGVADLILRTL 155
++ VN G P+ D + L
Sbjct: 93 INAVNEHGNVPLHYACFWGQDQVAEDL 119
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 13/78 (16%)
Query: 81 LIRCGADVNAKDYQGNTPL--HIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
L+ G++VN KD+ G TPL II Y +S F L E+GA+++ N +G T
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSE-MSYF---------LLEHGANVNDRNLEGET 136
Query: 139 P-IQATTTGVADLILRTL 155
P I A+ G ++++ + L
Sbjct: 137 PLIVASKYGRSEIVKKLL 154
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 72 FPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDT 131
F + + L+ GA+VN ++ +G TPL + + Y R+ I+ L E GA +
Sbjct: 111 FGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS--------EIVKKLLELGADISA 162
Query: 132 VNNKGLT 138
+ GLT
Sbjct: 163 RDLTGLT 169
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIA 103
++L+ GADV AKD G+TPLH+ A
Sbjct: 23 RILMANGADVAAKDKNGSTPLHLAA 47
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHI 101
KLL+ GADVNA+D G T I
Sbjct: 56 KLLLEAGADVNAQDKFGKTAFDI 78
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIA 103
++L+ GADV AKD G+TPLH+ A
Sbjct: 41 RILMANGADVAAKDKNGSTPLHLAA 65
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 79 KLLIRCGADVNAKDYQGNTPL 99
K+L+ CG DVN D+ G TPL
Sbjct: 102 KMLLDCGVDVNEYDWNGGTPL 122
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 79 KLLIRCGADVNAKDYQGNTPL 99
K+L+ CG DVN D+ G TPL
Sbjct: 84 KMLLDCGVDVNEYDWNGGTPL 104
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 79 KLLIRCGADVNAKDYQGNTPL 99
K+L+ CG DVN D+ G TPL
Sbjct: 86 KMLLDCGVDVNEYDWNGGTPL 106
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 56 NYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTL 115
N + T +D + T K+L+ GADVNA D G+ P+H+ AI +
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHL------AIREG--- 118
Query: 116 HTIILDLTENGAHMDTVNNKGLTPIQ-ATTTGVADLI 151
H+ ++ + + + GLTP++ A G +L+
Sbjct: 119 HSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLM 155
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 56 NYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTL 115
N + T +D + T K+L+ GADVNA D G+ P+H+ AI +
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHL------AIREG--- 120
Query: 116 HTIILDLTENGAHMDTVNNKGLTPIQ-ATTTGVADLI 151
H+ ++ + + + GLTP++ A G +L+
Sbjct: 121 HSSVVSFLAPESDLHHRDASGLTPLELARQRGAQNLM 157
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQ 113
LL++CGADVN YQG +P + T+ R + Q
Sbjct: 165 SLLLKCGADVNRVTYQGYSPYQL--TWGRPSTRIQ 197
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 79 KLLIRCGADVNAKDY-QGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGL 137
+LL+ GADVNA++ G T LH+ D Q + L L + GA ++ V +G
Sbjct: 131 ELLVSLGADVNAQEPCNGRTALHLAV-------DLQNPDLVSL-LLKCGADVNRVTYQGY 182
Query: 138 TPIQATTTGVADLILRTLTKINLK 161
+P Q T + I + L ++ L+
Sbjct: 183 SPYQLTWGRPSTRIQQQLGQLTLE 206
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 81 LIRCGADVNAKDYQGNTPLHI 101
L+ G D +D++GNTPLH+
Sbjct: 61 LLGAGCDPELRDFRGNTPLHL 81
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQ 113
LL++CGADVN YQG +P + T+ R + Q
Sbjct: 168 SLLLKCGADVNRVTYQGYSPYQL--TWGRPSTRIQ 200
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 79 KLLIRCGADVNAKDY-QGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGL 137
+LL+ GADVNA++ G T LH+ D Q + L L + GA ++ V +G
Sbjct: 134 ELLVSLGADVNAQEPCNGRTALHLAV-------DLQNPDLVSL-LLKCGADVNRVTYQGY 185
Query: 138 TPIQATTTGVADLILRTLTKINLKCLAAKVITQNNITY 175
+P Q T + I + L ++ L+ L +++ +Y
Sbjct: 186 SPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESY 223
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 81 LIRCGADVNAKDYQGNTPLHI 101
L+ G D +D++GNTPLH+
Sbjct: 64 LLGAGCDPELRDFRGNTPLHL 84
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 74 CAATT---KLLIRCGADVNAKDYQGNTPLHIIAT 104
CA T K L++ G +VNA D G TPLH A+
Sbjct: 79 CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 74 CAATT---KLLIRCGADVNAKDYQGNTPLHIIAT 104
CA T K L++ G +VNA D G TPLH A+
Sbjct: 79 CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAAS 112
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDT--VNN 134
K LI+ GA V+ KD +G+T LH+ A + + ++ L NG MD ++
Sbjct: 59 AVKYLIKAGALVDPKDAEGSTCLHLAAK--------KGHYEVVQYLLSNG-QMDVNCQDD 109
Query: 135 KGLTP-IQATTTGVADLILRTLTK---INLK 161
G TP I AT DL+ L+K IN++
Sbjct: 110 GGWTPMIWATEYKHVDLVKLLLSKGSDINIR 140
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 74 CAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN 133
C ++L+ D++A + G++PLHI A R ++L L+ + + + N
Sbjct: 156 CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENR-------YDCVVLFLSRD-SDVTLKN 207
Query: 134 NKGLTPIQATT 144
+G TP+Q +
Sbjct: 208 KEGETPLQCAS 218
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD 121
KLL++ GAD K+ GNTPL ++ + I D +LD
Sbjct: 129 KLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLRGDAALLD 171
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 67 NDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG 126
++ C + +LL++ GA VN D TPLH A + + I L ++G
Sbjct: 84 HNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK--------YEICKLLLQHG 135
Query: 127 AHMDTVNNKGLTPIQATTTGVADL 150
A N G TP+ G D+
Sbjct: 136 ADPTKKNRDGNTPLDLVKDGDTDI 159
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTL 115
L+ GAD N++D G TPLH A A+ FQ L
Sbjct: 70 LLDAGADANSQDNTGRTPLH-AAVAADAMGVFQIL 103
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 69 VCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH 128
+ + LI AD+NA D G T LH + A+++ + ++ +++ + A+
Sbjct: 125 AARLAIEGMVEDLITADADINAADNSGKTALH----WAAAVNNTEAVNILLM----HHAN 176
Query: 129 MDTVNNKGLTPI 140
D ++K TP+
Sbjct: 177 RDAQDDKDETPL 188
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 69 VCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH 128
++ + K L+ AD N +D G TPLH + +D Q + I+ +
Sbjct: 32 AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-----ADAQGVFQIL--IRNRATD 84
Query: 129 MDTVNNKGLTPI 140
+D + G TP+
Sbjct: 85 LDARMHDGTTPL 96
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 89 NAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVA 148
N D G T LH+ A Y R+ + + L E A + +N G TP+ A + A
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKR--------LLEASADANIQDNMGRTPLHAAVSADA 70
Query: 149 DLILRTLTKINLKCLAAKV 167
+ + L + L A++
Sbjct: 71 QGVFQILIRNRATDLDARM 89
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 80 LLIRCGADVNAKDYQGNTPLHIIAT 104
LI GA+VN+ D G TPLH A+
Sbjct: 72 FLITAGANVNSPDSHGWTPLHCAAS 96
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 69 VCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH 128
++ + K L+ AD N +D G TPLH + +D Q + I+ +
Sbjct: 65 AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-----ADAQGVFQIL--IRNRATD 117
Query: 129 MDTVNNKGLTPI 140
+D + G TP+
Sbjct: 118 LDARMHDGTTPL 129
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 89 NAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVA 148
N D G T LH+ A Y R+ + + L E A + +N G TP+ A + A
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKR--------LLEASADANIQDNMGRTPLHAAVSADA 103
Query: 149 DLILRTLTKINLKCLAAKV 167
+ + L + L A++
Sbjct: 104 QGVFQILIRNRATDLDARM 122
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 69 VCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH 128
++ + K L+ AD N +D G TPLH + +D Q + I+ +
Sbjct: 64 AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-----ADAQGVFQIL--IRNRATD 116
Query: 129 MDTVNNKGLTPI 140
+D + G TP+
Sbjct: 117 LDARMHDGTTPL 128
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 89 NAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVA 148
N D G T LH+ A Y R+ + + L E A + +N G TP+ A + A
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKR--------LLEASADANIQDNMGRTPLHAAVSADA 102
Query: 149 DLILRTLTKINLKCLAAKV 167
+ + L + L A++
Sbjct: 103 QGVFQILIRNRATDLDARM 121
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 80 LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
LL GADVNA D G L I A SD + + ++LD +GA ++ +G TP
Sbjct: 167 LLDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLD---HGADVNVRGERGKTP 222
Query: 140 I 140
+
Sbjct: 223 L 223
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 76 ATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTL 115
A T LL+ GADVN + +G TPL I+A ++ + Q L
Sbjct: 200 AITHLLLDHGADVNVRGERGKTPL-ILAVEKKHLGLVQRL 238
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 76 ATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTL 115
A T LL+ GADVN + +G TPL I+A ++ + Q L
Sbjct: 220 AITHLLLDHGADVNVRGERGKTPL-ILAVEKKHLGLVQRL 258
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 80 LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
LL GADVNA D G L I A SD + + ++LD +GA ++ +G TP
Sbjct: 187 LLDEMGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLD---HGADVNVRGERGKTP 242
Query: 140 I 140
+
Sbjct: 243 L 243
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
K L+ A N KD GNTPL + H ++ L ++GA ++ NNKG T
Sbjct: 136 KCLLDSNAKPNKKDLSGNTPLIYACSGGH--------HELVALLLQHGASINASNNKGNT 187
Query: 139 PI 140
+
Sbjct: 188 AL 189
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDF 112
KLL++ GAD K+ GNTPL ++ + I D
Sbjct: 127 KLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDL 160
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 67 NDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG 126
++ C + +LL++ GA VN D TPLH A + + I L ++G
Sbjct: 82 HNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK--------YEICKLLLQHG 133
Query: 127 AHMDTVNNKGLTPIQATTTGVADL 150
A N G TP+ G D+
Sbjct: 134 ADPTKKNRDGNTPLDLVKDGDTDI 157
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDF 112
KLL++ GAD K+ GNTPL ++ + I D
Sbjct: 125 KLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDL 158
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 67 NDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG 126
++ C + +LL++ GA VN D TPLH A + + I L ++G
Sbjct: 80 HNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK--------YEICKLLLQHG 131
Query: 127 AHMDTVNNKGLTPIQATTTGVADL 150
A N G TP+ G D+
Sbjct: 132 ADPTKKNRDGNTPLDLVKDGDTDI 155
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 68 DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIA 103
D + T + L+ ADVN +D +GN PLH+ A
Sbjct: 76 DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 68 DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIA 103
D + T + L+ ADVN +D +GN PLH+ A
Sbjct: 76 DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 68 DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIA 103
D + T + L+ ADVN +D +GN PLH+ A
Sbjct: 76 DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 68 DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIA 103
D + T + L+ ADVN +D +GN PLH+ A
Sbjct: 76 DAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 68 DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIA 103
D + T + L+ ADVN +D +GN PLH+ A
Sbjct: 76 DAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAA 111
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 69 VCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH 128
++ + K L+ AD +D G TPLH + +D Q + I+ L
Sbjct: 29 AARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVS-----ADAQGVFQIL--LRNRATD 81
Query: 129 MDTVNNKGLTPI 140
+D + G TP+
Sbjct: 82 LDARMHDGTTPL 93
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 15/103 (14%)
Query: 89 NAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVA 148
N D G T LH+ A Y R+ + + L E A +N G TP+ A + A
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKR--------LLEASADAXIQDNMGRTPLHAAVSADA 67
Query: 149 DLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHG 191
+ + L + L A++ + G P L + + L G
Sbjct: 68 QGVFQILLRNRATDLDARM-------HDGTTPLILAARLALEG 103
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPI 140
LI ADVNA D G + LH A + L +NGA+ D NNK TP+
Sbjct: 108 LINSHADVNAVDDLGKSALHWAAA--------VNNVDAAVVLLKNGANKDMQNNKEETPL 159
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLH 100
+ + L++ G+D N KD+ G TPLH
Sbjct: 25 SVEYLLQNGSDPNVKDHAGWTPLH 48
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 67 NDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG 126
++ C +LL++ A VN YQ ++PLH A I+ L G
Sbjct: 48 HEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHV--------DIVKLLLSYG 99
Query: 127 AHMDTVNNKGLTPIQAT 143
A + VN GL P+ T
Sbjct: 100 ASRNAVNIFGLRPVDYT 116
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 69 VCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH 128
+ + K L+ AD N +D G TPLH + +D Q + I+ +
Sbjct: 64 AAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-----ADAQGVFQIL--IRNRATD 116
Query: 129 MDTVNNKGLTPI 140
+D + G TP+
Sbjct: 117 LDARMHDGTTPL 128
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 89 NAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVA 148
N D G T LH+ A Y R+ + + L E A + +N G TP+ A + A
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKR--------LLEASADANIQDNMGRTPLHAAVSADA 102
Query: 149 DLILRTLTKINLKCLAAKV 167
+ + L + L A++
Sbjct: 103 QGVFQILIRNRATDLDARM 121
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 75 AATTKLLIRCGADVNAKDYQGNTPL 99
A+ +LL++ GAD A+ Y G TPL
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPL 229
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 75 AATTKLLIRCGADVNAKDYQGNTPL 99
A+ +LL++ GAD A+ Y G TPL
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPL 229
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPI 140
LI ADVNA D G + LH A + L +NGA+ D NNK TP+
Sbjct: 34 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL--------KNGANKDMQNNKEETPL 85
>pdb|1YQN|A Chain A, E. Coli Ispf Double Mutant
Length = 161
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 72 FPCAATTKLLIRCGADVNAKDYQ-GNTPLHIIATYERAISDFQTLHTIILDLTENGAHMD 130
F A + +LL + AK Y GN + IIA + + + I + + G HMD
Sbjct: 70 FKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAE--DLGCHMD 127
Query: 131 TVNNKGLTPIQATTTGVA 148
VN K T + TG+
Sbjct: 128 DVNVKATTTEKLGFTGMG 145
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 79 KLLIRCGADVNAKDYQGNTPLH 100
+LL++ GA+VNA+ Y G++ LH
Sbjct: 167 QLLLQHGANVNAQMYSGSSALH 188
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 92 DYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ 141
D G+TPLHI + +H ++ + G +D NN TP+
Sbjct: 6 DEDGDTPLHIAVVQ----GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLH 51
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 80 LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTL 115
L ++ GAD+ A+D +G PL I E A +D TL
Sbjct: 286 LFLKRGADLGARDSEGRDPLTI--AMETANADIVTL 319
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 69 VCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERA 108
++ +TT++L+R G +A+ TPLH+ A+ A
Sbjct: 41 AAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA 80
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 80 LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTL 115
L ++ GAD+ A+D +G PL I E A +D TL
Sbjct: 286 LFLKRGADLGARDSEGRDPLTI--AMETANADIVTL 319
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 80 LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTL 115
L ++ GAD+ A+D +G PL I E A +D TL
Sbjct: 286 LFLKRGADLGARDSEGRDPLTI--AMETANADIVTL 319
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
+ L+ GAD+NA D TPL + A YE +S + L + D T G GLT
Sbjct: 52 EFLLLKGADINAPDKHHITPL-LSAVYEGHVSCVKLLLSKGADKTVKGP-------DGLT 103
Query: 139 PIQAT 143
++AT
Sbjct: 104 ALEAT 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,408,479
Number of Sequences: 62578
Number of extensions: 204573
Number of successful extensions: 629
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 244
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)