Query psy8420
Match_columns 199
No_of_seqs 137 out of 1279
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 18:27:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 100.0 4.8E-28 1.7E-32 177.4 11.7 120 7-158 6-129 (169)
2 2f8y_A Notch homolog 1, transl 99.9 3.7E-26 1.3E-30 172.9 10.1 176 2-197 22-220 (223)
3 2xai_A ASB-9, ankyrin repeat a 99.9 3.3E-25 1.1E-29 172.2 14.7 169 2-188 33-259 (261)
4 4b93_B Ankyrin repeat domain-c 99.9 4.9E-26 1.7E-30 178.3 9.7 125 2-143 83-225 (269)
5 3aji_A 26S proteasome non-ATPa 99.9 1E-25 3.5E-30 171.4 10.4 172 2-193 37-230 (231)
6 1oy3_D Transcription factor in 99.9 6.9E-26 2.4E-30 176.7 9.5 177 1-197 5-254 (282)
7 2rfm_A Putative ankyrin repeat 99.9 6.4E-26 2.2E-30 168.3 8.4 125 2-158 32-160 (192)
8 3hra_A Ankyrin repeat family p 99.9 3.4E-25 1.2E-29 165.1 12.1 135 2-153 36-199 (201)
9 3c5r_A BARD-1, BRCA1-associate 99.9 9.8E-25 3.3E-29 153.6 13.3 120 2-153 7-126 (137)
10 1ikn_D Protein (I-kappa-B-alph 99.9 1.3E-25 4.5E-30 171.7 9.5 140 2-158 42-210 (236)
11 1oy3_D Transcription factor in 99.9 3.9E-25 1.3E-29 172.4 11.9 145 2-163 42-256 (282)
12 3aaa_C Myotrophin, protein V-1 99.9 1.1E-24 3.6E-29 150.8 12.7 119 2-152 4-122 (123)
13 3twr_A Tankyrase-2; ankyrin re 99.9 1.8E-24 6.3E-29 156.6 13.9 124 2-142 5-147 (165)
14 1yyh_A HN1;, notch 1, ankyrin 99.9 2.5E-25 8.7E-30 172.1 9.7 142 2-160 54-218 (253)
15 2jab_A H10-2-G3; HER2, darpin, 99.9 1.9E-24 6.4E-29 152.2 13.1 120 3-154 12-135 (136)
16 2rfa_A Transient receptor pote 99.9 4.3E-25 1.5E-29 168.2 10.2 138 4-158 2-184 (232)
17 3b7b_A Euchromatic histone-lys 99.9 7.5E-25 2.6E-29 167.2 10.8 175 2-196 8-205 (237)
18 1d9s_A Cyclin-dependent kinase 99.9 9.1E-25 3.1E-29 153.8 10.0 122 2-156 9-135 (136)
19 3f6q_A Integrin-linked protein 99.9 3.4E-24 1.2E-28 157.4 13.5 122 4-142 4-144 (179)
20 2y1l_E Darpin-8.4; hydrolase-i 99.9 2E-24 6.8E-29 157.4 12.1 123 3-157 12-138 (169)
21 3d9h_A CDNA FLJ77766, highly s 99.9 8.7E-25 3E-29 172.2 10.3 137 2-156 56-214 (285)
22 2xai_A ASB-9, ankyrin repeat a 99.9 9.1E-25 3.1E-29 169.8 10.3 138 4-159 2-161 (261)
23 3v31_A Ankyrin repeat family A 99.9 1.6E-24 5.4E-29 157.3 10.6 160 4-198 2-165 (167)
24 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.2E-24 1.8E-28 146.9 12.7 121 4-156 1-125 (126)
25 1ihb_A P18-INK4C(INK6), cyclin 99.9 9.4E-25 3.2E-29 157.5 9.0 124 1-157 1-128 (162)
26 3v30_A DNA-binding protein rfx 99.9 3.4E-24 1.2E-28 156.2 11.9 105 27-154 49-157 (172)
27 4hbd_A KN motif and ankyrin re 99.9 7.3E-25 2.5E-29 172.0 8.9 136 2-154 108-272 (276)
28 1bi7_B P16INK4A, MTS1, multipl 99.9 1.5E-24 5E-29 156.2 9.2 128 2-162 9-141 (156)
29 3aji_A 26S proteasome non-ATPa 99.9 2.2E-24 7.4E-29 164.0 10.6 136 2-154 70-227 (231)
30 3d9h_A CDNA FLJ77766, highly s 99.9 1.8E-24 6.2E-29 170.4 10.5 174 1-197 88-283 (285)
31 1s70_B 130 kDa myosin-binding 99.9 3.1E-24 1.1E-28 169.1 11.3 139 4-159 39-259 (299)
32 4b93_B Ankyrin repeat domain-c 99.9 1E-24 3.5E-29 170.7 8.3 144 2-161 49-214 (269)
33 1awc_B Protein (GA binding pro 99.9 8.1E-24 2.8E-28 151.6 12.2 119 6-142 3-139 (153)
34 2dzn_A Probable 26S proteasome 99.9 5.4E-24 1.8E-28 161.4 11.6 143 2-161 33-204 (228)
35 1k1a_A B-cell lymphoma 3-encod 99.9 3.4E-24 1.2E-28 163.6 10.3 175 2-196 6-211 (241)
36 2dzn_A Probable 26S proteasome 99.9 5.4E-24 1.8E-28 161.4 11.2 134 5-155 2-163 (228)
37 3ljn_A Hypothetical protein; a 99.9 1.2E-24 4.1E-29 176.4 8.0 139 2-157 17-198 (364)
38 1k1a_A B-cell lymphoma 3-encod 99.9 6.1E-24 2.1E-28 162.2 11.2 142 2-160 43-211 (241)
39 2etb_A Transient receptor pote 99.9 3.9E-24 1.3E-28 165.3 10.0 142 4-158 1-207 (256)
40 3v31_A Ankyrin repeat family A 99.9 1.6E-23 5.4E-28 152.0 12.5 121 2-154 33-157 (167)
41 2f8y_A Notch homolog 1, transl 99.9 9.9E-24 3.4E-28 159.5 11.7 141 2-159 55-218 (223)
42 2rfa_A Transient receptor pote 99.9 3.8E-24 1.3E-28 162.9 9.3 139 2-157 34-222 (232)
43 1yyh_A HN1;, notch 1, ankyrin 99.9 9.9E-24 3.4E-28 163.1 11.4 136 2-154 87-245 (253)
44 4gpm_A Engineered protein OR26 99.9 5.7E-24 2E-28 155.6 9.4 114 2-132 34-165 (169)
45 1sw6_A Regulatory protein SWI6 99.9 5.6E-24 1.9E-28 170.7 10.0 125 2-143 128-323 (327)
46 3b7b_A Euchromatic histone-lys 99.9 1.2E-23 4E-28 160.5 11.2 143 2-161 41-206 (237)
47 1ikn_D Protein (I-kappa-B-alph 99.9 5.7E-25 2E-29 168.1 3.2 175 1-195 4-211 (236)
48 1wdy_A 2-5A-dependent ribonucl 99.9 1.1E-23 3.8E-28 164.0 10.5 123 3-142 37-188 (285)
49 3utm_A Tankyrase-1; tankyrase, 99.9 1E-23 3.5E-28 168.9 10.2 175 2-196 55-308 (351)
50 3f6q_A Integrin-linked protein 99.9 3.5E-23 1.2E-27 151.9 11.5 141 46-197 4-167 (179)
51 2vge_A RELA-associated inhibit 99.9 7.1E-23 2.4E-27 156.6 13.5 127 2-160 18-151 (229)
52 2fo1_E LIN-12 protein; beta-ba 99.9 9E-24 3.1E-28 172.3 9.0 172 2-193 163-371 (373)
53 3ehr_A Osteoclast-stimulating 99.9 1.8E-23 6.3E-28 158.5 10.0 111 2-144 70-181 (222)
54 3t8k_A Uncharacterized protein 99.9 3.9E-24 1.3E-28 158.8 5.9 135 3-154 36-176 (186)
55 3jxi_A Vanilloid receptor-rela 99.9 6.7E-24 2.3E-28 164.2 7.5 177 1-197 1-254 (260)
56 3v30_A DNA-binding protein rfx 99.9 3.1E-23 1E-27 151.2 10.2 158 5-197 2-164 (172)
57 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.9E-23 1.7E-27 147.6 10.9 117 5-154 2-123 (156)
58 3jxi_A Vanilloid receptor-rela 99.9 1.5E-23 5.2E-28 162.2 8.7 132 2-157 90-250 (260)
59 3twr_A Tankyrase-2; ankyrin re 99.9 7.1E-23 2.4E-27 148.2 11.4 138 43-192 4-164 (165)
60 2etb_A Transient receptor pote 99.9 2E-23 6.8E-28 161.4 8.9 130 3-157 88-246 (256)
61 3kea_A K1L; tropism, ANK repea 99.9 6.3E-24 2.2E-28 167.3 6.0 166 2-196 28-249 (285)
62 1ycs_B 53BP2, P53BP2; ankyrin 99.9 7E-23 2.4E-27 157.3 11.5 126 3-160 35-167 (239)
63 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.4E-22 4.7E-27 133.5 11.3 93 4-128 1-93 (93)
64 1n11_A Ankyrin; clathrin, BAND 99.9 2.6E-23 9E-28 172.2 9.2 139 2-157 11-171 (437)
65 1n11_A Ankyrin; clathrin, BAND 99.9 4E-23 1.4E-27 171.1 9.9 123 3-142 144-284 (437)
66 4g8k_A 2-5A-dependent ribonucl 99.9 1.9E-22 6.5E-27 161.8 13.6 159 2-196 165-329 (337)
67 1s70_B 130 kDa myosin-binding 99.9 8.9E-23 3E-27 160.7 11.4 135 2-153 70-282 (299)
68 3kea_A K1L; tropism, ANK repea 99.9 6.9E-23 2.4E-27 161.4 10.7 123 27-158 12-155 (285)
69 2pnn_A Transient receptor pote 99.9 4.9E-23 1.7E-27 160.7 9.7 134 2-159 98-260 (273)
70 3deo_A Signal recognition part 99.9 7.3E-23 2.5E-27 151.0 10.0 108 2-142 41-149 (183)
71 3eu9_A Huntingtin-interacting 99.9 6.5E-23 2.2E-27 156.0 9.9 141 1-158 5-169 (240)
72 3utm_A Tankyrase-1; tankyrase, 99.9 1E-22 3.6E-27 163.0 11.3 143 2-161 88-309 (351)
73 1wdy_A 2-5A-dependent ribonucl 99.9 7.5E-23 2.6E-27 159.3 10.0 139 3-154 3-170 (285)
74 2l6b_A NR1C; ankyrin, consensu 99.9 4.9E-23 1.7E-27 140.6 6.9 108 2-141 6-113 (115)
75 3hra_A Ankyrin repeat family p 99.9 6.5E-22 2.2E-26 147.2 12.5 122 1-154 1-128 (201)
76 3ljn_A Hypothetical protein; a 99.9 2.5E-22 8.5E-27 162.7 10.7 125 2-158 135-270 (364)
77 1awc_B Protein (GA binding pro 99.9 1.3E-21 4.4E-26 140.0 12.9 105 47-159 2-127 (153)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.4E-22 4.7E-27 155.7 8.2 160 3-196 3-167 (239)
79 3ui2_A Signal recognition part 99.9 2.4E-22 8.2E-27 154.9 9.5 108 2-142 42-150 (244)
80 2pnn_A Transient receptor pote 99.9 1.3E-22 4.6E-27 158.2 7.4 125 2-158 51-219 (273)
81 4g8k_A 2-5A-dependent ribonucl 99.9 8.7E-22 3E-26 158.0 10.4 138 4-158 24-232 (337)
82 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.3E-21 7.9E-26 138.9 11.4 117 4-154 35-155 (156)
83 2fo1_E LIN-12 protein; beta-ba 99.9 6.3E-22 2.2E-26 161.4 9.0 138 2-156 196-370 (373)
84 3eu9_A Huntingtin-interacting 99.9 1.3E-21 4.4E-26 148.8 9.1 174 2-195 39-237 (240)
85 1bi7_B P16INK4A, MTS1, multipl 99.8 6E-22 2.1E-26 142.4 5.1 107 2-141 42-149 (156)
86 3jue_A Arfgap with coiled-coil 99.8 8.1E-21 2.8E-25 154.8 10.8 120 4-155 198-324 (368)
87 3lvq_E ARF-GAP with SH3 domain 99.8 1.6E-20 5.4E-25 158.6 12.8 128 6-162 133-270 (497)
88 3t8k_A Uncharacterized protein 99.8 6.6E-21 2.3E-25 141.4 7.1 130 4-161 5-150 (186)
89 2vge_A RELA-associated inhibit 99.8 6.4E-22 2.2E-26 151.3 1.5 124 2-157 51-178 (229)
90 1ihb_A P18-INK4C(INK6), cyclin 99.8 1.1E-20 3.7E-25 136.0 7.1 109 2-128 35-162 (162)
91 2y1l_E Darpin-8.4; hydrolase-i 99.8 3.7E-20 1.3E-24 134.6 9.2 108 2-126 44-169 (169)
92 2b0o_E UPLC1; arfgap, structur 99.8 8.7E-20 3E-24 145.0 12.0 124 5-157 151-284 (301)
93 1dcq_A PYK2-associated protein 99.8 2.5E-19 8.5E-24 140.8 13.1 124 5-157 130-263 (278)
94 2jab_A H10-2-G3; HER2, darpin, 99.8 1.8E-19 6E-24 126.5 10.9 93 2-126 44-136 (136)
95 1d9s_A Cyclin-dependent kinase 99.8 2.2E-20 7.4E-25 131.2 5.8 94 2-128 42-136 (136)
96 2b0o_E UPLC1; arfgap, structur 99.8 5.4E-20 1.9E-24 146.1 8.8 104 2-143 187-293 (301)
97 4hbd_A KN motif and ankyrin re 99.8 1.1E-20 3.7E-25 148.2 4.3 140 4-160 75-245 (276)
98 2rfm_A Putative ankyrin repeat 99.8 5.9E-20 2E-24 136.0 7.5 108 2-126 65-190 (192)
99 1n0r_A 4ANK, 4 ankyrin repeats 99.8 4.7E-19 1.6E-23 121.8 11.3 95 2-128 32-126 (126)
100 3lvq_E ARF-GAP with SH3 domain 99.8 1.6E-19 5.5E-24 152.5 10.7 109 2-142 168-279 (497)
101 1dcq_A PYK2-associated protein 99.8 5.1E-19 1.7E-23 139.0 11.9 96 2-129 166-264 (278)
102 2zgd_A 3 repeat synthetic anky 99.8 8.6E-19 3E-23 118.8 10.9 90 1-122 20-109 (110)
103 1n0q_A 3ANK, 3 ankyrin repeats 99.8 6.2E-19 2.1E-23 115.8 9.2 88 46-156 1-92 (93)
104 1sw6_A Regulatory protein SWI6 99.7 4.4E-19 1.5E-23 142.2 4.2 114 9-154 101-227 (327)
105 3ehr_A Osteoclast-stimulating 99.7 1E-18 3.5E-23 132.2 5.5 103 2-136 103-206 (222)
106 3c5r_A BARD-1, BRCA1-associate 99.7 1E-17 3.5E-22 117.4 9.2 100 37-160 1-104 (137)
107 3jue_A Arfgap with coiled-coil 99.7 8.6E-18 3E-22 136.9 9.5 108 3-142 233-343 (368)
108 3deo_A Signal recognition part 99.7 2.5E-17 8.5E-22 121.2 9.4 83 2-108 73-156 (183)
109 3ui2_A Signal recognition part 99.7 3.2E-17 1.1E-21 126.2 10.2 104 2-154 74-182 (244)
110 3aaa_C Myotrophin, protein V-1 99.7 8.5E-18 2.9E-22 115.8 6.0 80 2-105 37-116 (123)
111 2l6b_A NR1C; ankyrin, consensu 99.7 3.2E-17 1.1E-21 111.5 8.2 96 42-160 4-103 (115)
112 2aja_A Ankyrin repeat family p 99.7 2.3E-18 7.8E-23 140.7 1.7 150 3-195 90-252 (376)
113 2zgd_A 3 repeat synthetic anky 99.7 3.1E-16 1.1E-20 106.1 8.3 80 40-142 17-96 (110)
114 2aja_A Ankyrin repeat family p 99.6 6.1E-18 2.1E-22 138.2 -1.9 117 2-158 125-251 (376)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=4.8e-28 Score=177.35 Aligned_cols=120 Identities=26% Similarity=0.348 Sum_probs=86.5
Q ss_pred hHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCC
Q psy8420 7 TSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGA 86 (199)
Q Consensus 7 t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga 86 (199)
++|+.||..|+ .++|+.|++.|+++|.+|..|.||||+|+.. ++.+++++|++.|+
T Consensus 6 ~~L~~Aa~~G~---------~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~---------------~~~~~~~~ll~~ga 61 (169)
T 4gpm_A 6 KRLIEAAENGN---------KDRVKDLIENGADVNASDSDGRTPLHHAAEN---------------GHKEVVKLLISKGA 61 (169)
T ss_dssp HHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc---------------CCHHHHHHHHhccc
Confidence 57999999999 9999999999999999999999999999999 55566666666666
Q ss_pred CCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccc
Q psy8420 87 DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKI 158 (199)
Q Consensus 87 ~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~ 158 (199)
+++.+|..|+||||+|+..++. +++++|+++|++++.+|..|.||||+ ...++++.|++.+++.
T Consensus 62 d~~~~d~~g~TpLh~A~~~g~~--------~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~ 129 (169)
T 4gpm_A 62 DVNAKDSDGRTPLHHAAENGHK--------EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred chhhhccCCCCHHHHHHHcCCH--------HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 6666666666666666666655 66666666666666666666666655 3445555555554443
No 2
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.93 E-value=3.7e-26 Score=172.92 Aligned_cols=176 Identities=19% Similarity=0.204 Sum_probs=146.9
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC------------------C
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------D 62 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------~ 62 (199)
|..|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..++ ++ +
T Consensus 22 d~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g 92 (223)
T 2f8y_A 22 DRTGETALHLAARYSR---------SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 92 (223)
T ss_dssp TTTCCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTC
T ss_pred CCCCCchHHHHHHcCC---------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence 6789999999999999 999999999999999999999999999999988 32 5
Q ss_pred cccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420 63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA 142 (199)
Q Consensus 63 ~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 142 (199)
.+|++.|+..++.+++++|+++|++++..|..|.||||+|+..++. +++++|+++|++++.+|..|.||||+
T Consensus 93 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~ 164 (223)
T 2f8y_A 93 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV--------DAAVVLLKNGANKDMQNNREETPLFL 164 (223)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCH--------HHHHHHHHcCCCCCCcCCCCcCHHHH
Confidence 7889999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhccc
Q psy8420 143 ----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDKT 197 (199)
Q Consensus 143 ----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 197 (199)
...++++.|++.+.+.......+......... .-..++.+++..+|+.....
T Consensus 165 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~---~~~~~i~~~L~~~g~~~~~~ 220 (223)
T 2f8y_A 165 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE---RMHHDIVRLLDEYNLVRSPQ 220 (223)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH---TTCHHHHHHHHHTTCSSCC-
T ss_pred HHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHH---hcchHHHHHHHHcCCCcccc
Confidence 56678999999876654432111111111111 12456778888888876554
No 3
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.93 E-value=3.3e-25 Score=172.25 Aligned_cols=169 Identities=21% Similarity=0.195 Sum_probs=108.9
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------- 61 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------- 61 (199)
|..|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..|+ ++
T Consensus 33 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t 103 (261)
T 2xai_A 33 TADHVSPLHEACLGGH---------LSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLAS 103 (261)
T ss_dssp CTTCCCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTCC
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence 4567777777777777 677777777777777777777777777776666 22
Q ss_pred ------------------------------CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccc
Q psy8420 62 ------------------------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISD 111 (199)
Q Consensus 62 ------------------------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~ 111 (199)
|.+|++.|+..++.+++++|++.|++++. +..|.||||+|+..++.
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~--- 179 (261)
T 2xai_A 104 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASE--- 179 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCH---
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCH---
Confidence 34555556666666666666666666664 55666666666666666
Q ss_pred hhhHHHHHHHHHHcCCCCCCCCCCCCCcccc--ccchHHHHHHhhcccchhHHHHHHHHhh-ccccC-----CCCCchhH
Q psy8420 112 FQTLHTIILDLTENGAHMDTVNNKGLTPIQA--TTTGVADLILRTLTKINLKCLAAKVITQ-NNITY-----KGLVPHDL 183 (199)
Q Consensus 112 ~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~l 183 (199)
+++++|+++|++++.+|..|.||+++ ....+++.|++......+.......+++ .|... .-.+|..+
T Consensus 180 -----~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l 254 (261)
T 2xai_A 180 -----ELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254 (261)
T ss_dssp -----HHHHHHHHTTCCTTCCCTTSCCGGGGSCTTCTHHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHH
T ss_pred -----HHHHHHHHcCCCCCCcCCCCCChhhhccccccHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHH
Confidence 77788888888888888888888887 3445677777776666665443333332 22221 12367777
Q ss_pred HHHHH
Q psy8420 184 ESFIE 188 (199)
Q Consensus 184 ~~~~~ 188 (199)
+.|++
T Consensus 255 ~~~l~ 259 (261)
T 2xai_A 255 KQFLL 259 (261)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77764
No 4
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.93 E-value=4.9e-26 Score=178.28 Aligned_cols=125 Identities=19% Similarity=0.202 Sum_probs=105.5
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT 63 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~ 63 (199)
|+.|.||||+|+..|+ .++++.|+..|++++.++..|.||+++|+..++ ++ |.
T Consensus 83 d~~G~TpLh~A~~~g~---------~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~ 153 (269)
T 4b93_B 83 SQDGSSPLHVAALHGR---------ADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGN 153 (269)
T ss_dssp CTTSCCHHHHHHHTTC---------TTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCC
T ss_pred CCCCCCHHHHHHHcCc---------HHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCC
Confidence 5678888888888888 788888888888888888888888888888776 22 67
Q ss_pred ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccc
Q psy8420 64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQAT 143 (199)
Q Consensus 64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~ 143 (199)
+|++.|+..++.+++++|+++|+++|.++..|.||||+|+..|+. +++++|+++|++++.+|..|.||||++
T Consensus 154 TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~--------~~v~~Ll~~Gad~~~~d~~G~TpL~~A 225 (269)
T 4b93_B 154 TPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV--------FVVELLLLHGASVQVLNKRQRTAVDCA 225 (269)
T ss_dssp CHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH--------HHHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred CHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCH--------HHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 888888888888888888888888888888888888888888888 888888888888888888888888883
No 5
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.93 E-value=1e-25 Score=171.35 Aligned_cols=172 Identities=15% Similarity=0.061 Sum_probs=139.3
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT 63 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~ 63 (199)
|..|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..++ ++ |.
T Consensus 37 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 107 (231)
T 3aji_A 37 DQDSRTALHWACSAGH---------TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC 107 (231)
T ss_dssp CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCCHHHHHHHcCc---------HHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCC
Confidence 5789999999999999 999999999999999999999999999999988 32 57
Q ss_pred ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc-
Q psy8420 64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA- 142 (199)
Q Consensus 64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~- 142 (199)
+|++.|+..++.+++++|++.|++++..+..|.||||+|+..++. +++++|+++|++++.+|..|.||||+
T Consensus 108 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~A 179 (231)
T 3aji_A 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL--------KMVHILLFYKASTNIQDTEGNTPLHLA 179 (231)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH--------HHHHHHHhcCCCccccCCCCCCHHHHH
Confidence 888899999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred ---ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhh
Q psy8420 143 ---TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTA 193 (199)
Q Consensus 143 ---~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (199)
...++++.|++.+.+.......+......... .-...+.+++..+|.+
T Consensus 180 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~---~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 180 CDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKG---GLGLILKRLAEGEEAS 230 (231)
T ss_dssp HHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCH---HHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh---hHHHHHHHHHcccccc
Confidence 45678888888876654422211111111111 1244577788777765
No 6
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.93 E-value=6.9e-26 Score=176.74 Aligned_cols=177 Identities=19% Similarity=0.269 Sum_probs=145.7
Q ss_pred CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCC---cccccCCCchHHHHHHhcCC-CC---------------
Q psy8420 1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNK---LSVASRQNQSLLHLCVNYET-PV--------------- 61 (199)
Q Consensus 1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~---i~~~~~~g~t~L~~a~~~~~-~~--------------- 61 (199)
.|.+|.||||+|+..|+ .++++.|++.|++ ++.++..|.||||+|+..|+ ++
T Consensus 5 ~d~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~ 75 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQH---------EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75 (282)
T ss_dssp CCTTCCCHHHHHHHTTC---------HHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC
T ss_pred cCCCCCcHHHHHHHcCC---------HHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 37899999999999999 9999999999888 88899999999999999988 33
Q ss_pred --CcccccccccCCcHHHHHHHHhcCCC-----------------------------------------------CccCC
Q psy8420 62 --DTFHTNDVCKFPCAATTKLLIRCGAD-----------------------------------------------VNAKD 92 (199)
Q Consensus 62 --~~~~l~~~~~~~~~~~~~~Ll~~ga~-----------------------------------------------v~~~d 92 (199)
|.+|++.|+..++.+++++|+++|++ ++..+
T Consensus 76 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (282)
T 1oy3_D 76 RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155 (282)
T ss_dssp TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCC
T ss_pred CCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcC
Confidence 67899999999999999999998765 77888
Q ss_pred CCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCC-CCCcccc----ccchHHHHHHhhcccchhHHHHHHH
Q psy8420 93 YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK-GLTPIQA----TTTGVADLILRTLTKINLKCLAAKV 167 (199)
Q Consensus 93 ~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~-g~tpl~~----~~~~~~~~ll~~~~~~~~~~~~~~~ 167 (199)
..|.||||+|+..++. +++++|+++|++++..+.. |.||||+ ...++++.|++.+.+.......+..
T Consensus 156 ~~g~t~L~~A~~~g~~--------~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t 227 (282)
T 1oy3_D 156 YDGHTPLHVAVIHKDA--------EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT 227 (282)
T ss_dssp TTSCCHHHHHHHTTCH--------HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCCcCHHHHHHHcCCH--------HHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCC
Confidence 9999999999999999 9999999999999999865 9999999 5677899999987765543322221
Q ss_pred HhhccccCCCCCchhHHHHHHHhhhhhccc
Q psy8420 168 ITQNNITYKGLVPHDLESFIELHGTALDKT 197 (199)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 197 (199)
...+.+.. -...+.++|..+|++++..
T Consensus 228 pL~~A~~~---~~~~~v~~Ll~~ga~~~~~ 254 (282)
T 1oy3_D 228 PLGSALLR---PNPILARLLRAHGAPEPED 254 (282)
T ss_dssp HHHHHHTS---SCHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHc---CCcHHHHHHHHcCCCcCcC
Confidence 11111211 1356778889999988754
No 7
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.93 E-value=6.4e-26 Score=168.35 Aligned_cols=125 Identities=26% Similarity=0.324 Sum_probs=97.1
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL 81 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 81 (199)
|..|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+.. ++.+++++|
T Consensus 32 d~~g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~L 87 (192)
T 2rfm_A 32 DSYNRTPLMVACMLGM---------ENAIDKLVENFDKLEDKDIEGSTALIWAVKN---------------NRLGIAEKL 87 (192)
T ss_dssp CTTCCCHHHHHHHHTC---------GGGHHHHHHHHCCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHhccccccccccCccHHHHHHHc---------------CCHHHHHHH
Confidence 6789999999999999 8999999999999999999999999999999 666677777
Q ss_pred HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhccc
Q psy8420 82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTK 157 (199)
Q Consensus 82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~ 157 (199)
++.|++++..|..|.||||+|+..++. +++++|+++|++++.+|..|.||||+ ...++++.|++.+.+
T Consensus 88 l~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 159 (192)
T 2rfm_A 88 LSKGSNVNTKDFSGKTPLMWSIIFGYS--------EMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD 159 (192)
T ss_dssp HHHTCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHCCCCCCCCCCCCCcHHHHHHHcCCH--------HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 766777666666677777777666666 66777776677776666667777666 344566666666544
Q ss_pred c
Q psy8420 158 I 158 (199)
Q Consensus 158 ~ 158 (199)
.
T Consensus 160 ~ 160 (192)
T 2rfm_A 160 I 160 (192)
T ss_dssp T
T ss_pred C
Confidence 3
No 8
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.93 E-value=3.4e-25 Score=165.10 Aligned_cols=135 Identities=17% Similarity=0.121 Sum_probs=92.4
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC------------------C
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------D 62 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------~ 62 (199)
|..|.||||+|+..++ .++++.|++.|++++.++..|.||||+|+..++ ++ |
T Consensus 36 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g 106 (201)
T 3hra_A 36 DTEGNTPLNIAVHNND---------IEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYG 106 (201)
T ss_dssp CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCC
Confidence 4567778888887777 777888888788877777777888888777765 22 4
Q ss_pred cccccccccCCcHHHHHHHHhcC-CCCccCCCCCCcHHHHHHhccC-----cccchhhHHHHHHHHHHcCCCCCCCCCCC
Q psy8420 63 TFHTNDVCKFPCAATTKLLIRCG-ADVNAKDYQGNTPLHIIATYER-----AISDFQTLHTIILDLTENGAHMDTVNNKG 136 (199)
Q Consensus 63 ~~~l~~~~~~~~~~~~~~Ll~~g-a~v~~~d~~g~tpl~~a~~~~~-----~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g 136 (199)
.+|++.|+..++.+++++|++.| ++++.+|..|.||||+|+..+. . +++++|+++|++++.+|..|
T Consensus 107 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~--------~~v~~Ll~~ga~~~~~~~~g 178 (201)
T 3hra_A 107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ--------DIVKLLMENGADQSIKDNSG 178 (201)
T ss_dssp CCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHH--------HHHHHHHHTTCCTTCCCTTS
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHH--------HHHHHHHHCCCCCCccCCCC
Confidence 56666666666666666666666 6666666666666666666555 4 66666666666666666666
Q ss_pred CCcccc----ccchHHHHHHh
Q psy8420 137 LTPIQA----TTTGVADLILR 153 (199)
Q Consensus 137 ~tpl~~----~~~~~~~~ll~ 153 (199)
.|||++ ...++++.|++
T Consensus 179 ~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 179 RTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp CCHHHHHHHHTCHHHHHHHHT
T ss_pred CCHHHHHHHcCCHhHHHHHHh
Confidence 666666 34445555544
No 9
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.92 E-value=9.8e-25 Score=153.63 Aligned_cols=120 Identities=25% Similarity=0.222 Sum_probs=111.9
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL 81 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 81 (199)
|..|.||||+|+..++ .++++.|++.|++++.++..|.||||+|+.. ++.+++++|
T Consensus 7 ~~~g~t~L~~A~~~~~---------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~---------------~~~~~~~~L 62 (137)
T 3c5r_A 7 NHRGETLLHIASIKGD---------IPSVEYLLQNGSDPNVKDHAGWTPLHEACNH---------------GHLKVVELL 62 (137)
T ss_dssp CTTCCCHHHHHHHHTC---------HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT---------------TCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc---------------CCHHHHHHH
Confidence 6789999999999999 9999999999999999999999999999999 999999999
Q ss_pred HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccccchHHHHHHh
Q psy8420 82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILR 153 (199)
Q Consensus 82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~~~~~~~~ll~ 153 (199)
+++|++++.+|..|.||||+|+..++. +++++|+++|++++.+|..|.||++++.......++.
T Consensus 63 l~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~ 126 (137)
T 3c5r_A 63 LQHKALVNTTGYQNDSPLHDAAKNGHV--------DIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL 126 (137)
T ss_dssp HHTTCCTTCCCGGGCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHS
T ss_pred HHcCCcccCcCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHh
Confidence 999999999999999999999999999 9999999999999999999999999955544444443
No 10
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.92 E-value=1.3e-25 Score=171.66 Aligned_cols=140 Identities=21% Similarity=0.218 Sum_probs=122.1
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------- 61 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------- 61 (199)
|..|.||||+|+..++ .++++.|++.|++++.++..|.||||+|+..++ ++
T Consensus 42 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~ 112 (236)
T 1ikn_D 42 NNLQQTPLHLAVITNQ---------PEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA 112 (236)
T ss_dssp CTTCCCHHHHHHHTTC---------HHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGC
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhc
Confidence 4678899999999998 899999999999999999999999999998876 11
Q ss_pred ----CcccccccccCCcHHHHHHHHhcCCCCccCCC-CCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCC
Q psy8420 62 ----DTFHTNDVCKFPCAATTKLLIRCGADVNAKDY-QGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136 (199)
Q Consensus 62 ----~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~-~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g 136 (199)
|.+|++.|+..++.+++++|+++|++++.++. .|.||||+|+..++. +++++|+++|++++.+|..|
T Consensus 113 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g 184 (236)
T 1ikn_D 113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP--------DLVSLLLKCGADVNRVTYQG 184 (236)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH--------HHHHHHHTTTCCSCCCCTTC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCcccCCC
Confidence 56788889999999999999999999999887 899999999999999 99999999999999999999
Q ss_pred CCcccc----ccchHHHHHHhhcccc
Q psy8420 137 LTPIQA----TTTGVADLILRTLTKI 158 (199)
Q Consensus 137 ~tpl~~----~~~~~~~~ll~~~~~~ 158 (199)
.|||++ ...++++.|++.+++.
T Consensus 185 ~tpl~~A~~~~~~~~~~~Ll~~ga~~ 210 (236)
T 1ikn_D 185 YSPYQLTWGRPSTRIQQQLGQLTLEN 210 (236)
T ss_dssp CCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred CCHHHHHHccCchHHHHHHHHcchhh
Confidence 999998 4567788888876653
No 11
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.92 E-value=3.9e-25 Score=172.45 Aligned_cols=145 Identities=24% Similarity=0.214 Sum_probs=131.5
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------- 61 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------- 61 (199)
|..|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..++ ++
T Consensus 42 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~ 112 (282)
T 1oy3_D 42 NDLGQTALHLAAILGE---------ASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112 (282)
T ss_dssp CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHH
Confidence 5679999999999999 999999999999999999999999999998776 11
Q ss_pred ---------------------------------------------CcccccccccCCcHHHHHHHHhcCCCCccCCCC-C
Q psy8420 62 ---------------------------------------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQ-G 95 (199)
Q Consensus 62 ---------------------------------------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~-g 95 (199)
|.+|++.|+..++.+++++|+++|++++..+.. |
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g 192 (282)
T 1oy3_D 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192 (282)
T ss_dssp -------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTC
T ss_pred hhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 457889999999999999999999999999865 9
Q ss_pred CcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchhHHH
Q psy8420 96 NTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINLKCL 163 (199)
Q Consensus 96 ~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~~~~ 163 (199)
.||||+|+..++. +++++|+++|++++.+|..|.||||+ ...++++.|++.+++......
T Consensus 193 ~tpL~~A~~~~~~--------~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 256 (282)
T 1oy3_D 193 RTPLHLAVEAQAA--------SVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGG 256 (282)
T ss_dssp CCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-
T ss_pred cCHHHHHHHcCCH--------HHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCC
Confidence 9999999999999 99999999999999999999999999 567789999999888665433
No 12
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.92 E-value=1.1e-24 Score=150.80 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=108.7
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL 81 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 81 (199)
+..|.||||+|+..+. .++++.|++.|++++.++..|.||||+|+.. ++.+++++|
T Consensus 4 ~~~~~~~l~~A~~~~~---------~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~L 59 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGD---------LDEVKDYVAKGEDVNRTLEGGRKPLHYAADC---------------GQLEILEFL 59 (123)
T ss_dssp ---CHHHHHHHHHTTC---------HHHHHHHHHTTCCTTSCCTTSSCHHHHHHHT---------------TCHHHHHHH
T ss_pred ccccchHHHHHHHcCC---------HHHHHHHHHcCCCcCccCCCCCcHHHHHHHc---------------CCHHHHHHH
Confidence 4678999999999999 9999999999999999999999999999999 999999999
Q ss_pred HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccccchHHHHHH
Q psy8420 82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLIL 152 (199)
Q Consensus 82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~~~~~~~~ll 152 (199)
++.|++++.+|..|+||||+|+..++. +++++|+++|++++.+|..|.||++++.......++
T Consensus 60 l~~g~~~~~~d~~g~tpL~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ll 122 (123)
T 3aaa_C 60 LLKGADINAPDKHHITPLLSAVYEGHV--------SCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122 (123)
T ss_dssp HTTTCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHHH
T ss_pred HHcCCCCCcCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHHh
Confidence 999999999999999999999999999 999999999999999999999999996544443433
No 13
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=1.8e-24 Score=156.65 Aligned_cols=124 Identities=23% Similarity=0.258 Sum_probs=69.8
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHH-cCCCcccccCCCchHHHHHHhcCC-CC-----------------C
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVF-SLNKLSVASRQNQSLLHLCVNYET-PV-----------------D 62 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~-~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~ 62 (199)
|..|.||||.|+..|. .++++.|++ .+.+++..+..|.||||+|+..++ ++ |
T Consensus 5 ~~~~~~~l~~A~~~g~---------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 75 (165)
T 3twr_A 5 NSEADRQLLEAAKAGD---------VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG 75 (165)
T ss_dssp -CHHHHHHHHHHHHTC---------HHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred cchhhHHHHHHHHhCC---------HHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCC
Confidence 3455566666666666 566666655 234555555555666666666522 00 1
Q ss_pred cccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420 63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA 142 (199)
Q Consensus 63 ~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 142 (199)
.+|++.|+..++.+++++|+++|++++.+|..|.||||+|+..++. +++++|+++|++++.+|..|.||+++
T Consensus 76 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~t~l~~ 147 (165)
T 3twr_A 76 LVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY--------EICKLLLQHGADPTKKNRDGNTPLDL 147 (165)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCTGGG
T ss_pred CCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCcccCCCCCChhHh
Confidence 2222222222666666666666666666666666666666666666 66666666666666666666666665
No 14
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.92 E-value=2.5e-25 Score=172.07 Aligned_cols=142 Identities=23% Similarity=0.250 Sum_probs=129.0
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC------------------C
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------D 62 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------~ 62 (199)
|..|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..++ ++ |
T Consensus 54 d~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g 124 (253)
T 1yyh_A 54 DRTGETALHLAARYSR---------SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 124 (253)
T ss_dssp CTTSCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTC
T ss_pred CCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCC
Confidence 6789999999999999 999999999999999999999999999999887 22 6
Q ss_pred cccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420 63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA 142 (199)
Q Consensus 63 ~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 142 (199)
.+|++.|+..++.+++++|++.|++++.+|..|.||||+|+..++. +++++|+++|++++.+|..|.||||+
T Consensus 125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~tpL~~ 196 (253)
T 1yyh_A 125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV--------DAAVVLLKNGANKDMQNNREETPLFL 196 (253)
T ss_dssp CCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 7888999999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred ----ccchHHHHHHhhcccchh
Q psy8420 143 ----TTTGVADLILRTLTKINL 160 (199)
Q Consensus 143 ----~~~~~~~~ll~~~~~~~~ 160 (199)
...++++.|++.+.+...
T Consensus 197 A~~~~~~~~v~~Ll~~ga~~~~ 218 (253)
T 1yyh_A 197 AAREGSYETAKVLLDHFANRDI 218 (253)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHCCCHHHHHHHHHcCCCccc
Confidence 566788889988766544
No 15
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=1.9e-24 Score=152.16 Aligned_cols=120 Identities=22% Similarity=0.251 Sum_probs=112.8
Q ss_pred cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420 3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI 82 (199)
Q Consensus 3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 82 (199)
..|.||||+|+..|+ .++++.|++.|++++.+|..|.||||+|+.. ++.+++++|+
T Consensus 12 ~~~~t~l~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~Ll 67 (136)
T 2jab_A 12 SDLGKKLLEAARAGQ---------DDEVRILMANGADVNAKDEYGLTPLYLATAH---------------GHLEIVEVLL 67 (136)
T ss_dssp CHHHHHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH---------------TCHHHHHHHH
T ss_pred ccccHHHHHHHHhCC---------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc---------------CCHHHHHHHH
Confidence 568999999999999 9999999999999999999999999999999 9999999999
Q ss_pred hcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420 83 RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT 154 (199)
Q Consensus 83 ~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~ 154 (199)
+.|++++..|..|.||||+|+..++. +++++|+++|++++..|..|.|||++ ...++++.|++.
T Consensus 68 ~~g~~~~~~d~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 68 KNGADVNAVDAIGFTPLHLAAFIGHL--------EIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HcCCCCCcCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 99999999999999999999999999 99999999999999999999999998 455667777654
No 16
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.92 E-value=4.3e-25 Score=168.16 Aligned_cols=138 Identities=19% Similarity=0.173 Sum_probs=124.3
Q ss_pred chhhHHHHHHHHhhccccCChhHHHHHHHHHHc-CCCcccccCCCchHHHHHHhcCC-CC--------------------
Q psy8420 4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFS-LNKLSVASRQNQSLLHLCVNYET-PV-------------------- 61 (199)
Q Consensus 4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~-g~~i~~~~~~g~t~L~~a~~~~~-~~-------------------- 61 (199)
.|.||||+|+..|+ .++++.|++. |++++.+|..|.||||+|+..|+ ++
T Consensus 2 ~g~t~L~~A~~~g~---------~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 72 (232)
T 2rfa_A 2 IWESPLLLAAKEND---------VQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSEL 72 (232)
T ss_dssp CTTCHHHHHHHTTC---------HHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTT
T ss_pred CCCCHHHHHHHcCC---------HHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccC
Confidence 58999999999999 9999999997 99999999999999999999988 32
Q ss_pred --CcccccccccCCcHHHHHHHHhcCCCCccCCC-------------CCCcHHHHHHhccCcccchhhHHHHHHHHHHcC
Q psy8420 62 --DTFHTNDVCKFPCAATTKLLIRCGADVNAKDY-------------QGNTPLHIIATYERAISDFQTLHTIILDLTENG 126 (199)
Q Consensus 62 --~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~-------------~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g 126 (199)
|.+|++.|+..++.+++++|+++|++++..+. .|.||||+|+..++. +++++|+++|
T Consensus 73 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g 144 (232)
T 2rfa_A 73 YEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE--------EIVRLLIEHG 144 (232)
T ss_dssp TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCH--------HHHHHHHHTT
T ss_pred CCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCH--------HHHHHHHHCC
Confidence 56889999999999999999999999999875 799999999999999 9999999999
Q ss_pred CCCCCCCCCCCCcccc----ccchHH----HHHHhhcccc
Q psy8420 127 AHMDTVNNKGLTPIQA----TTTGVA----DLILRTLTKI 158 (199)
Q Consensus 127 a~~~~~~~~g~tpl~~----~~~~~~----~~ll~~~~~~ 158 (199)
++++.+|..|.||||+ ...+++ +.|++.+.+.
T Consensus 145 a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 145 ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp CCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred CCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 9999999999999999 334444 7777776644
No 17
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.92 E-value=7.5e-25 Score=167.17 Aligned_cols=175 Identities=13% Similarity=0.104 Sum_probs=136.9
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT 63 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~ 63 (199)
|.+|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..|+ ++ +.
T Consensus 8 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 78 (237)
T 3b7b_A 8 HQNKRSPLHAAAEAGH---------VDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS 78 (237)
T ss_dssp SCCSCCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSC
T ss_pred cCCCCCHHHHHHHcCc---------HHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC
Confidence 6789999999999999 899999999999999999999999999999988 32 56
Q ss_pred ccccccccCCcHHHHHHHHhcC-CCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420 64 FHTNDVCKFPCAATTKLLIRCG-ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA 142 (199)
Q Consensus 64 ~~l~~~~~~~~~~~~~~Ll~~g-a~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 142 (199)
+|++.|+..++.+++++|++.| ++++..+..|.||||+|+..++. +++++|+++|++++..+..|.||||+
T Consensus 79 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~--------~~~~~Ll~~g~~~~~~~~~g~t~L~~ 150 (237)
T 3b7b_A 79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV--------DLVKLLLSKGSDINIRDNEENICLHW 150 (237)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCH--------HHHHHHHHCCCCCCccCCCCCCHHHH
Confidence 7888899999999999999988 88999999999999999999988 99999999999999999999999988
Q ss_pred ----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhcc
Q psy8420 143 ----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDK 196 (199)
Q Consensus 143 ----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 196 (199)
...++++.|++.+.+.......+.......+. . -..++..++..+|++++.
T Consensus 151 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~-~--~~~~~v~~Ll~~gad~~~ 205 (237)
T 3b7b_A 151 AAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR-E--NRYDCVVLFLSRDSDVTL 205 (237)
T ss_dssp HHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH-T--TCHHHHHHHHTTTCCTTC
T ss_pred HHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH-h--CCHhHHHHHHHcCCCCCc
Confidence 55677888888765543321111000000011 0 123456777777777654
No 18
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=9.1e-25 Score=153.79 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=112.8
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL 81 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 81 (199)
|..|.||||+|+..++ .++++.|++.|++++.++..|.||||+|+. ++.+++++|
T Consensus 9 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----------------~~~~~v~~L 63 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQ---------VETVRQLLEAGADPNALNRFGRRPIQVMMM----------------GSAQVAELL 63 (136)
T ss_dssp CCCCSCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTCCTTTTTSTT----------------SCHHHHHHH
T ss_pred CCCCccHHHHHHHcCC---------HHHHHHHHHcCCCcCCcCCCCCCHHHHHHc----------------CCHHHHHHH
Confidence 6789999999999999 999999999999999999999999998665 488999999
Q ss_pred HhcCCCCccCCCC-CCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcc
Q psy8420 82 IRCGADVNAKDYQ-GNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLT 156 (199)
Q Consensus 82 l~~ga~v~~~d~~-g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~ 156 (199)
+++|++++.+|.. |.||||+|+..++. +++++|+++|++++.+|..|.||||+ ...++++.|++.++
T Consensus 64 l~~g~~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 64 LLHGAEPNCADPATLTRPVHDAAREGFL--------DTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHTCCSSCCBTTTTBCHHHHHHHHTCH--------HHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHCCCCCCCcCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 9999999999999 99999999999999 99999999999999999999999998 45667777777654
No 19
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.92 E-value=3.4e-24 Score=157.42 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=71.0
Q ss_pred chhhHHHHHHHHhhccccCChhHHHHHHHHHHc-CCCcccccCCCchHHHHHHhcCC-CC-----------------Ccc
Q psy8420 4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFS-LNKLSVASRQNQSLLHLCVNYET-PV-----------------DTF 64 (199)
Q Consensus 4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~-g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~~ 64 (199)
.+.++||.|+..|+ .++++.|++. +.+++.++..|.||||+|+..++ ++ |.+
T Consensus 4 ~~~~~l~~A~~~g~---------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 74 (179)
T 3f6q_A 4 EFMDDIFTQCREGN---------AVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT 74 (179)
T ss_dssp ---CCHHHHHHHTC---------HHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred HHHHHHHHHHHcCC---------HHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCC
Confidence 34556666666666 5666666655 44555566666666666666522 00 222
Q ss_pred cccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420 65 HTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA 142 (199)
Q Consensus 65 ~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 142 (199)
|++.|+..++.+++++|+++|++++.+|..|.||||+|+..++. +++++|+++|++++.+|..|.||+++
T Consensus 75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~tpl~~ 144 (179)
T 3f6q_A 75 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD--------QVAEDLVANGALVSICNKYGEMPVDK 144 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCSSBCCTTSCCGGGG
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH--------HHHHHHHHCCCCcchhccCCCCcHHH
Confidence 22333333666666666666666666666666666666666666 66666666666666666666666666
No 20
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.92 E-value=2e-24 Score=157.36 Aligned_cols=123 Identities=23% Similarity=0.319 Sum_probs=92.3
Q ss_pred cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420 3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI 82 (199)
Q Consensus 3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 82 (199)
..+.|+||.|+..|+ .++++.|++.|++++.++..|.||||+|+.. ++.+++++|+
T Consensus 12 ~~~~~~l~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~Ll 67 (169)
T 2y1l_E 12 SDLGKKLLEAARAGR---------DDEVRILMANGADVNAEDASGWTPLHLAAFN---------------GHLEIVEVLL 67 (169)
T ss_dssp -CHHHHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHHH
T ss_pred CcccchHHHHHHcCC---------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc---------------CCHHHHHHHH
Confidence 467899999999999 9999999999999999999999999999999 6666666666
Q ss_pred hcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhccc
Q psy8420 83 RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTK 157 (199)
Q Consensus 83 ~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~ 157 (199)
+.|++++..|..|.||||+|+..++. +++++|+++|++++..|..|.||||+ ...++++.|++.+.+
T Consensus 68 ~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 138 (169)
T 2y1l_E 68 KNGADVNAVDHAGMTPLRLAALFGHL--------EIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138 (169)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HcCCCCCccCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 66666666666666666666666666 66666666666666666666666666 344556666665444
No 21
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.91 E-value=8.7e-25 Score=172.18 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=80.6
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT 63 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~ 63 (199)
|..|+||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..|+ ++ |.
T Consensus 56 ~~~g~t~L~~Aa~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~ 126 (285)
T 3d9h_A 56 AVSDWSPMHEAAIHGH---------QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH 126 (285)
T ss_dssp SCCSCCHHHHHHHTTC---------HHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCC
T ss_pred CccCCCHHHHHHHcCC---------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCC
Confidence 4556666666666666 666666666666666666666666666666665 22 34
Q ss_pred ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc-
Q psy8420 64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA- 142 (199)
Q Consensus 64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~- 142 (199)
+|++.|+..++.+++++|++.|++++..+ .|.||||+|+..++. +++++|+++|++++..|..|.||||+
T Consensus 127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~--------~~v~~Ll~~g~~~~~~d~~g~t~L~~A 197 (285)
T 3d9h_A 127 TPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHV--------ECVNSLIAYGGNIDHKISHLGTPLYLA 197 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCBTTTBCHHHHH
T ss_pred CHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCH--------HHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 55555555566666666666665555433 355666666655555 55666666666655555556666555
Q ss_pred ---ccchHHHHHHhhcc
Q psy8420 143 ---TTTGVADLILRTLT 156 (199)
Q Consensus 143 ---~~~~~~~~ll~~~~ 156 (199)
...++++.|++.+.
T Consensus 198 ~~~~~~~~v~~Ll~~ga 214 (285)
T 3d9h_A 198 CENQQRACVKKLLESGA 214 (285)
T ss_dssp HHTTCHHHHHHHHHTTC
T ss_pred HHcCcHHHHHHHHHCCC
Confidence 33445555555533
No 22
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.91 E-value=9.1e-25 Score=169.78 Aligned_cols=138 Identities=15% Similarity=0.132 Sum_probs=123.0
Q ss_pred chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cccc
Q psy8420 4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DTFH 65 (199)
Q Consensus 4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~~~ 65 (199)
+|+||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..|+ ++ |.+|
T Consensus 2 ~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 72 (261)
T 2xai_A 2 SDWSPMHEAAIHGH---------QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP 72 (261)
T ss_dssp --CCHHHHHHHHTC---------HHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCHHHHHHHcCC---------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 68999999999999 999999999999999999999999999999988 33 6789
Q ss_pred ccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc---
Q psy8420 66 TNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA--- 142 (199)
Q Consensus 66 l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~--- 142 (199)
++.|+..++.+++++|+++|++++. +..|.||||+|+..++. +++++|+++|++++..|..|.||||+
T Consensus 73 L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 143 (261)
T 2xai_A 73 LFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHV--------ECVNSLIAYGGNIDHKISHLGTPLYLACE 143 (261)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCBTTTBCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcH--------HHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 9999999999999999999999986 45699999999999999 99999999999999999999999998
Q ss_pred -ccchHHHHHHhhcccch
Q psy8420 143 -TTTGVADLILRTLTKIN 159 (199)
Q Consensus 143 -~~~~~~~~ll~~~~~~~ 159 (199)
...++++.|++.+.+..
T Consensus 144 ~~~~~~v~~Ll~~g~~~~ 161 (261)
T 2xai_A 144 NQQRACVKKLLESGADVN 161 (261)
T ss_dssp TTCHHHHHHHHHHTCCTT
T ss_pred hCCHHHHHHHHHcCCCCC
Confidence 55678888888866543
No 23
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.91 E-value=1.6e-24 Score=157.29 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=119.8
Q ss_pred chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420 4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR 83 (199)
Q Consensus 4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~ 83 (199)
.|.||||.|+..|. .++++.|++.|.+++.++..|.||||+|+.. ++.+++++|++
T Consensus 2 ~~~t~L~~A~~~g~---------~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~Ll~ 57 (167)
T 3v31_A 2 ANSLSVHQLAAQGE---------MLYLATRIEQENVINHTDEEGFTPLMWAAAH---------------GQIAVVEFLLQ 57 (167)
T ss_dssp TTCCCHHHHHHTTC---------HHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHHHH
T ss_pred CCcchHHHHHHCCC---------HHHHHHHHHcCCCcCCCCCCCCCHHHHHHHC---------------CCHHHHHHHHH
Confidence 58899999999999 9999999999999999999999999999999 78888888888
Q ss_pred cCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccch
Q psy8420 84 CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKIN 159 (199)
Q Consensus 84 ~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~ 159 (199)
.|++++..+..|.||||+|+..++. +++++|+++|++++..|..|.||||+ ...++++.|++.+.+..
T Consensus 58 ~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 129 (167)
T 3v31_A 58 NGADPQLLGKGRESALSLACSKGYT--------DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129 (167)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHHTCH--------HHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred cCCCCCCcCCCCCcHHHHHHHcCCH--------HHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 8888888888888888888888888 88888888888888888888888887 45567777777755543
Q ss_pred hHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhcccc
Q psy8420 160 LKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDKTF 198 (199)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 198 (199)
.....+.......... -..++.+++..++.+..+..
T Consensus 130 ~~~~~g~t~l~~A~~~---~~~~~~~~L~~~~~~~~~~~ 165 (167)
T 3v31_A 130 IETDSGYNSMDLAVAL---GYRSVQQVIESHLLKLLQNI 165 (167)
T ss_dssp CCCTTSCCHHHHHHHH---TCHHHHHHHHHHHHHHCSSC
T ss_pred CcCCCCCCHHHHHHHc---CcHHHHHHHHHHHHHHHHHh
Confidence 3211111110011110 13446677777776665543
No 24
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=5.2e-24 Score=146.91 Aligned_cols=121 Identities=29% Similarity=0.351 Sum_probs=114.1
Q ss_pred chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420 4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR 83 (199)
Q Consensus 4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~ 83 (199)
+|.||||+|+..++ .++++.|++.|++++.++..|.||||+|+.. ++.+++++|++
T Consensus 1 ~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~---------------~~~~~~~~Ll~ 56 (126)
T 1n0r_A 1 NGRTPLHLAARNGH---------LEVVKLLLEAGADVNAKDKNGRTPLHLAARN---------------GHLEVVKLLLE 56 (126)
T ss_dssp CCCCHHHHHHHHTC---------HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH---------------TCHHHHHHHHH
T ss_pred CCccHHHHHHHcCc---------HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc---------------CcHHHHHHHHH
Confidence 58999999999999 9999999999999999999999999999999 99999999999
Q ss_pred cCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcc
Q psy8420 84 CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLT 156 (199)
Q Consensus 84 ~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~ 156 (199)
.|++++.+|..|.||||+|+..++. +++++|+++|++++.+|..|.||+++ ...++++.|++.++
T Consensus 57 ~g~~~~~~~~~g~t~l~~A~~~~~~--------~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 57 AGADVNAKDKNGRTPLHLAARNGHL--------EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred cCCCCcccCCCCCcHHHHHHHcChH--------HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 9999999999999999999999999 99999999999999999999999998 45667888877654
No 25
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.91 E-value=9.4e-25 Score=157.51 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=91.0
Q ss_pred CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420 1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL 80 (199)
Q Consensus 1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~ 80 (199)
|.....||||.|+..|+ .++++.|++.|++++.++..|.||||+|+. ++.+++++
T Consensus 1 m~~~~~~~L~~A~~~g~---------~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~----------------~~~~~v~~ 55 (162)
T 1ihb_A 1 MAEPWGNELASAAARGD---------LEQLTSLLQNNVNVNAQNGFGRTALQVMKL----------------GNPEIARR 55 (162)
T ss_dssp ----CHHHHHHHHHHTC---------HHHHHHHTTSCCCTTCCCTTSCCHHHHCCS----------------SCHHHHHH
T ss_pred CcchHhhHHHHHHHcCC---------HHHHHHHHhCCCCccccCccCccHHHHHHc----------------CcHHHHHH
Confidence 34567899999999999 999999999999999999999999999765 36666666
Q ss_pred HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcc
Q psy8420 81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLT 156 (199)
Q Consensus 81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~ 156 (199)
|++.|++++.++..|.||||+|+..++. +++++|+++|++++.+|..|.||||+ ...++++.|++.+.
T Consensus 56 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 127 (162)
T 1ihb_A 56 LLLRGANPDLKDRTGFAVIHDAARAGFL--------DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127 (162)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHcCCCCCCCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccC
Confidence 6666666666666666777777666666 66666666666666666666777666 34556666666544
Q ss_pred c
Q psy8420 157 K 157 (199)
Q Consensus 157 ~ 157 (199)
.
T Consensus 128 ~ 128 (162)
T 1ihb_A 128 S 128 (162)
T ss_dssp C
T ss_pred C
Confidence 3
No 26
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.91 E-value=3.4e-24 Score=156.21 Aligned_cols=105 Identities=21% Similarity=0.243 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhcc
Q psy8420 27 EYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYE 106 (199)
Q Consensus 27 ~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~ 106 (199)
.++++.|++.|++++.++..|.||||+|+.. ++.+++++|+++|++++.+|..|.||||+|+..+
T Consensus 49 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 113 (172)
T 3v30_A 49 IETVRFLLEWGADPHILAKERESALSLASTG---------------GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN 113 (172)
T ss_dssp HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT---------------TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHHcCCCchhhcccCCCHHHHHHHC---------------CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 4444444444444444444444444444444 6666666666666666666666666666666666
Q ss_pred CcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420 107 RAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT 154 (199)
Q Consensus 107 ~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~ 154 (199)
+. +++++|+++|++++.+|..|.|||++ ...++++.|++.
T Consensus 114 ~~--------~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 114 HV--------KCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp CH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CH--------HHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 66 66666666666666666666666665 334445555544
No 27
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.91 E-value=7.3e-25 Score=171.98 Aligned_cols=136 Identities=19% Similarity=0.140 Sum_probs=122.9
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCC-CcccccCCCchHHHHHHhcCC---------------------
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLN-KLSVASRQNQSLLHLCVNYET--------------------- 59 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~-~i~~~~~~g~t~L~~a~~~~~--------------------- 59 (199)
|.+|.||||+|+..|+ .++++.|++.|+ +++.++..|.||||+|+....
T Consensus 108 d~~g~T~Lh~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~ 178 (276)
T 4hbd_A 108 DSNGNTALHYSVSHAN---------FPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAK 178 (276)
T ss_dssp CTTSCCHHHHHHHTTC---------HHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCC
T ss_pred CCCCCCHHHHHHHCCC---------HHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccc
Confidence 6889999999999999 999999999998 999999999999999994321
Q ss_pred --CCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHH-cCCCCCCCCCCC
Q psy8420 60 --PVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTE-NGAHMDTVNNKG 136 (199)
Q Consensus 60 --~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~g 136 (199)
.-|.+|++.|+..++.+++++|+++|++++.+|..|+||||+|+..++. +++++|++ .|++++.+|..|
T Consensus 179 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~--------~iv~~Ll~~~gad~~~~d~~g 250 (276)
T 4hbd_A 179 ASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHK--------EIAGLLLAVPSCDISLTDRDG 250 (276)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHTSTTCCTTCCCTTS
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCH--------HHHHHHHhcCCCCCcCcCCCC
Confidence 1177999999999999999999999999999999999999999999999 99999999 899999999999
Q ss_pred CCcccc----ccchHHHHHHhh
Q psy8420 137 LTPIQA----TTTGVADLILRT 154 (199)
Q Consensus 137 ~tpl~~----~~~~~~~~ll~~ 154 (199)
.|||++ ...++++.|++.
T Consensus 251 ~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 251 STALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhc
Confidence 999998 556777777776
No 28
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=1.5e-24 Score=156.17 Aligned_cols=128 Identities=16% Similarity=0.124 Sum_probs=114.1
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL 81 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 81 (199)
++.|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+ . ++.+++++|
T Consensus 9 ~~~~~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~---------------~~~~~v~~L 63 (156)
T 1bi7_B 9 MEPSADWLATAAARGR---------VEEVRALLEAGANPNAPNSYGRRPIQVMM-M---------------GSARVAELL 63 (156)
T ss_dssp -CCSTTHHHHHHHHTC---------HHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T---------------TCHHHHHHH
T ss_pred CccchHHHHHHHHcCC---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHH-c---------------CCHHHHHHH
Confidence 4678999999999999 99999999999999999999999999985 6 799999999
Q ss_pred HhcCCCCccCCCCCCc-HHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcc
Q psy8420 82 IRCGADVNAKDYQGNT-PLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLT 156 (199)
Q Consensus 82 l~~ga~v~~~d~~g~t-pl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~ 156 (199)
+++|++++.+|..|.| |||+|+..++. +++++|+++|++++.+|..|.||||+ ...++++.|++.+.
T Consensus 64 l~~g~~~~~~d~~g~ttpL~~A~~~~~~--------~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga 135 (156)
T 1bi7_B 64 LLHGAEPNCADPATLTRPVHDAAREGFL--------DTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG 135 (156)
T ss_dssp HTTTCCCCCCCTTTCCCHHHHHHHHTCH--------HHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-
T ss_pred HHcCCCCCCcCCCCCcHHHHHHHHCCCH--------HHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCC
Confidence 9999999999999999 99999999999 99999999999999999999999999 56778889998877
Q ss_pred cchhHH
Q psy8420 157 KINLKC 162 (199)
Q Consensus 157 ~~~~~~ 162 (199)
+.....
T Consensus 136 ~~~~~~ 141 (156)
T 1bi7_B 136 GTRGSN 141 (156)
T ss_dssp ------
T ss_pred CCCccC
Confidence 765543
No 29
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.91 E-value=2.2e-24 Score=164.03 Aligned_cols=136 Identities=19% Similarity=0.200 Sum_probs=123.4
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT 63 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~ 63 (199)
|..|.||||+|+..++ .++++.|++.|++++.++..|.||||+|+..++ ++ +.
T Consensus 70 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~ 140 (231)
T 3aji_A 70 DDAGWSPLHIAASAGX---------DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA 140 (231)
T ss_dssp CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCCHHHHHHHcCH---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 5689999999999999 999999999999999999999999999999988 22 67
Q ss_pred ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccc
Q psy8420 64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQAT 143 (199)
Q Consensus 64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~ 143 (199)
+|++.|+..++.+++++|+++|++++.+|..|.||||+|+..++. +++++|+++|++++.+|..|.||++++
T Consensus 141 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~t~l~~A 212 (231)
T 3aji_A 141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV--------EEAKFLVTQGASIYIENKEEKTPLQVA 212 (231)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCSCCCCTTSCCHHHHS
T ss_pred cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCH--------HHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 899999999999999999999999999999999999999999999 999999999999999999999999994
Q ss_pred c----chHHHHHHhh
Q psy8420 144 T----TGVADLILRT 154 (199)
Q Consensus 144 ~----~~~~~~ll~~ 154 (199)
. .++++.|.+.
T Consensus 213 ~~~~~~~i~~lL~~~ 227 (231)
T 3aji_A 213 KGGLGLILKRLAEGE 227 (231)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHccc
Confidence 3 2344444444
No 30
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.8e-24 Score=170.35 Aligned_cols=174 Identities=14% Similarity=0.109 Sum_probs=140.9
Q ss_pred CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC----------------Cc
Q psy8420 1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV----------------DT 63 (199)
Q Consensus 1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~----------------~~ 63 (199)
.|..|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..++ ++ +.
T Consensus 88 ~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~ 158 (285)
T 3d9h_A 88 ITADHVSPLHEACLGGH---------LSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA 158 (285)
T ss_dssp ECTTCCCHHHHHHHTTC---------HHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTS
T ss_pred cCCCCCCHHHHHHHCCc---------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCC
Confidence 04679999999999999 999999999999999999999999999999988 33 57
Q ss_pred ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc-
Q psy8420 64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA- 142 (199)
Q Consensus 64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~- 142 (199)
+|++.|+..++.+++++|++.|++++.+|..|.||||+|+..++. +++++|++.|++++. +..|.||||+
T Consensus 159 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~-~~~g~t~L~~A 229 (285)
T 3d9h_A 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR--------ACVKKLLESGADVNQ-GKGQDSPLHAV 229 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH--------HHHHHHHHTTCCTTC-CBTTBCHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH--------HHHHHHHHCCCCCCC-CCCCCCHHHHH
Confidence 899999999999999999999999999999999999999999999 999999999999995 8899999999
Q ss_pred ---ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHh-hhhhccc
Q psy8420 143 ---TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELH-GTALDKT 197 (199)
Q Consensus 143 ---~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 197 (199)
...++++.|++.+.+.......+........ . ...+..++..+ |+++++.
T Consensus 230 ~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~----~-~~~~~~~Ll~~~~a~l~~~ 283 (285)
T 3d9h_A 230 VRTASEELACLLMDFGADTQAKNAEGKRPVELVP----P-ESPLAQLFLEREGASLPKP 283 (285)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC----T-TSHHHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc----C-ccHHHHHHHHhhccCCCCC
Confidence 5677899999998776654332322222222 1 13456666666 8877653
No 31
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.91 E-value=3.1e-24 Score=169.07 Aligned_cols=139 Identities=15% Similarity=0.187 Sum_probs=78.9
Q ss_pred chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cccc
Q psy8420 4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DTFH 65 (199)
Q Consensus 4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~~~ 65 (199)
.|.||||.|+..|+ .++++.|++.|++++.++..|.||||+|+..|+ ++ |.+|
T Consensus 39 ~~~t~l~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 109 (299)
T 1s70_B 39 DDGAVFLAACSSGD---------TEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIP 109 (299)
T ss_dssp CHHHHHHHHHHHTC---------HHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCccHHHHHHHcCC---------HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 44555555555555 555555555555555555555555555555555 11 3455
Q ss_pred ccccccCCcHHHHHHHHhcCCCCccCC-----------------------------------------------------
Q psy8420 66 TNDVCKFPCAATTKLLIRCGADVNAKD----------------------------------------------------- 92 (199)
Q Consensus 66 l~~~~~~~~~~~~~~Ll~~ga~v~~~d----------------------------------------------------- 92 (199)
++.|+..++.+++++|+++|++++..+
T Consensus 110 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (299)
T 1s70_B 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189 (299)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccC
Confidence 555555555555555555555554433
Q ss_pred -------CCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccch
Q psy8420 93 -------YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKIN 159 (199)
Q Consensus 93 -------~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~ 159 (199)
..|.||||+|+..++. +++++|+++|++++.+|..|.||||+ ...++++.|++.+++..
T Consensus 190 ~~~~~~~~~g~t~L~~A~~~g~~--------~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~ 259 (299)
T 1s70_B 190 INDVRHAKSGGTALHVAAAKGYT--------EVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME 259 (299)
T ss_dssp CCCCCCTTTCCCHHHHHHHHTCH--------HHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred cchhhhcCCCCCHHHHHHHCCcH--------HHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence 2345566666666666 66666666666666666666666665 34455666666655443
No 32
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.91 E-value=1e-24 Score=170.71 Aligned_cols=144 Identities=22% Similarity=0.253 Sum_probs=109.7
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT 63 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~ 63 (199)
+..|.||||.|+..+.. ..+++.|+..|+++|.+|..|.||||+|+..|+ ++ |.
T Consensus 49 ~~~~~t~L~~a~~~~~~--------~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~ 120 (269)
T 4b93_B 49 DPEFCHPLCQCPKCAPA--------QKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQA 120 (269)
T ss_dssp ----------------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCC
T ss_pred CccCCCHHHHHHHhCCH--------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCC
Confidence 45688999999988871 357888999999999999999999999999998 43 67
Q ss_pred ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc-
Q psy8420 64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA- 142 (199)
Q Consensus 64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~- 142 (199)
+|++.++..++.+++++|++.|++++.+|..|.||||+|+..|+. +++++|+++|++++.++..|.||||+
T Consensus 121 t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~--------~~v~~Ll~~gadvn~~~~~g~t~Lh~A 192 (269)
T 4b93_B 121 VPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH--------ELVALLLQHGASINASNNKGNTALHEA 192 (269)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG--------GGHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred CccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH--------HHHHHHHHCCCCCCccccCCCcHHHHH
Confidence 889999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ---ccchHHHHHHhhcccchhH
Q psy8420 143 ---TTTGVADLILRTLTKINLK 161 (199)
Q Consensus 143 ---~~~~~~~~ll~~~~~~~~~ 161 (199)
...++++.|++.+++....
T Consensus 193 ~~~g~~~~v~~Ll~~Gad~~~~ 214 (269)
T 4b93_B 193 VIEKHVFVVELLLLHGASVQVL 214 (269)
T ss_dssp HHTTCHHHHHHHHHTTCCSCCC
T ss_pred HHcCCHHHHHHHHHCCCCCCCc
Confidence 5677899999998776554
No 33
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.91 E-value=8.1e-24 Score=151.60 Aligned_cols=119 Identities=22% Similarity=0.198 Sum_probs=62.3
Q ss_pred hhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cccccc
Q psy8420 6 VTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DTFHTN 67 (199)
Q Consensus 6 ~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~~~l~ 67 (199)
.|+||.|+..|+ .++++.|++.|.+++ ++..|.||||+|+..|+ ++ |.+|++
T Consensus 3 ~~~L~~A~~~g~---------~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 72 (153)
T 1awc_B 3 GKKLLEAARAGQ---------DDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLH 72 (153)
T ss_dssp HHHHHHHHHHTC---------HHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred cHHHHHHHHcCC---------HHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 455666666655 555566665555554 34555566666555511 00 111111
Q ss_pred ccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420 68 DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA 142 (199)
Q Consensus 68 ~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 142 (199)
.|+..++.+++++|+++|++++.+|..|.||||+|+..++. +++++|+++|++++.+|..|.||+++
T Consensus 73 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~t~l~~ 139 (153)
T 1awc_B 73 MAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ--------EVVELLIKYGADVHTQSKFCKTAFDI 139 (153)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCccccCCCCCCHHHH
Confidence 11111555555555555555555555555555555555555 55555555555555555555555555
No 34
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.91 E-value=5.4e-24 Score=161.40 Aligned_cols=143 Identities=18% Similarity=0.162 Sum_probs=125.7
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcC--CCccc-ccCCCchHHHHHHhcCC-CC----------------
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSL--NKLSV-ASRQNQSLLHLCVNYET-PV---------------- 61 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g--~~i~~-~~~~g~t~L~~a~~~~~-~~---------------- 61 (199)
|..|.||||+|+..++ .++++.|++.| .+++. ++..|.||||+|+..++ ++
T Consensus 33 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 103 (228)
T 2dzn_A 33 DQDGRIPLHWSVSFQA---------HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI 103 (228)
T ss_dssp CTTSCCHHHHHHHTTC---------HHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCC
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccC
Confidence 6789999999999999 89999999999 55666 77899999999998887 22
Q ss_pred ---CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcC-CCCCCCCCCCC
Q psy8420 62 ---DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG-AHMDTVNNKGL 137 (199)
Q Consensus 62 ---~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g-a~~~~~~~~g~ 137 (199)
|.+|++.|+..++.+++++|+++|++++.+|..|.||||+|+..++. +++++|++.| ++++.+|..|.
T Consensus 104 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~d~~g~ 175 (228)
T 2dzn_A 104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL--------KLIELLCGLGKSAVNWQDKQGW 175 (228)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH--------HHHHHHHTTTCCCSCCCCTTSC
T ss_pred CcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH--------HHHHHHHhcCcccccCcCCCCC
Confidence 56788889999999999999999999999999999999999999999 9999999999 99999999999
Q ss_pred Ccccc----ccchHHHHHH-hhcccchhH
Q psy8420 138 TPIQA----TTTGVADLIL-RTLTKINLK 161 (199)
Q Consensus 138 tpl~~----~~~~~~~~ll-~~~~~~~~~ 161 (199)
||||+ ...++++.|+ +.+.+....
T Consensus 176 t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~ 204 (228)
T 2dzn_A 176 TPLFHALAEGHGDAAVLLVEKYGAEYDLV 204 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHCCCSCCB
T ss_pred CHHHHHHHcCCHHHHHHHHHhcCCCCCcc
Confidence 99998 5667889999 766665543
No 35
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.91 E-value=3.4e-24 Score=163.63 Aligned_cols=175 Identities=21% Similarity=0.288 Sum_probs=127.3
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHH----cCCCcccccCCCchHHHHHHhcCC-CC---------------
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVF----SLNKLSVASRQNQSLLHLCVNYET-PV--------------- 61 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~----~g~~i~~~~~~g~t~L~~a~~~~~-~~--------------- 61 (199)
|.+|.||||+|+..|+ .++++.|++ .|.+++.++..|.||||+|+..|+ ++
T Consensus 6 d~~g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 76 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGN---------LPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD 76 (241)
T ss_dssp -CTTCCHHHHHHHTTC---------HHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CCCCCcHHHHHHHcCC---------HHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence 6788999999999998 888888876 688888888889999999988887 22
Q ss_pred --CcccccccccCCcHHHHHHHHhcCC----CCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCC-C
Q psy8420 62 --DTFHTNDVCKFPCAATTKLLIRCGA----DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN-N 134 (199)
Q Consensus 62 --~~~~l~~~~~~~~~~~~~~Ll~~ga----~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~-~ 134 (199)
|.+|++.|+..++.+++++|++.|+ +++..+..|.||||+|+..++. +++++|++.|++++..+ .
T Consensus 77 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~--------~~~~~Ll~~g~~~~~~~~~ 148 (241)
T 1k1a_A 77 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ--------ETVQLLLERGADIDAVDIK 148 (241)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCH--------HHHHHHHHcCCCccccccc
Confidence 5677888888888888888888876 7888888888888888888888 88888888888888887 7
Q ss_pred CCCCcccc----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhcc
Q psy8420 135 KGLTPIQA----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDK 196 (199)
Q Consensus 135 ~g~tpl~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 196 (199)
.|.||||+ ...++++.|++.+.+.......+.....+.+.. + ..++.+++..+|++++.
T Consensus 149 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~--~~~~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR-G--LLPLVRTLVRSGADSSL 211 (241)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH-T--CHHHHHHHHHTTCCTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-C--CHHHHHHHHhcCCCCCC
Confidence 78888887 456678888877655433211111000000100 1 23456677777777654
No 36
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.91 E-value=5.4e-24 Score=161.38 Aligned_cols=134 Identities=18% Similarity=0.181 Sum_probs=115.6
Q ss_pred hhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccc-ccCCCchHHHHHHhcCC-CC--------------------C
Q psy8420 5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSV-ASRQNQSLLHLCVNYET-PV--------------------D 62 (199)
Q Consensus 5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~-~~~~g~t~L~~a~~~~~-~~--------------------~ 62 (199)
|.||||+|+..|+ .++++.|++.|.++.. ++..|.||||+|+..|+ ++ |
T Consensus 2 g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g 72 (228)
T 2dzn_A 2 SNYPLHQACMENE---------FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG 72 (228)
T ss_dssp -CCHHHHHHHTTC---------HHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTS
T ss_pred CccHHHHHHHhCC---------HHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCC
Confidence 6899999999999 8999999998877654 78899999999998887 22 4
Q ss_pred cccccccccCCcHHHHHHHHhcC--CCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcc
Q psy8420 63 TFHTNDVCKFPCAATTKLLIRCG--ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPI 140 (199)
Q Consensus 63 ~~~l~~~~~~~~~~~~~~Ll~~g--a~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl 140 (199)
.+|++.|+..++.+++++|+++| ++++..+..|.||||+|+..++. +++++|+++|++++.+|..|.|||
T Consensus 73 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~--------~~~~~Ll~~g~~~~~~~~~g~t~L 144 (228)
T 2dzn_A 73 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF--------EVSQFLIENGASVRIKDKFNQIPL 144 (228)
T ss_dssp CCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCSCCCCTTSCCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCH--------hHHHHHHHcCCCccccCCCCCCHH
Confidence 57888899999999999999988 88888899999999999999999 999999999999999999999999
Q ss_pred cc----ccchHHHHHHhhc
Q psy8420 141 QA----TTTGVADLILRTL 155 (199)
Q Consensus 141 ~~----~~~~~~~~ll~~~ 155 (199)
|+ ...++++.|++.+
T Consensus 145 ~~A~~~~~~~~v~~Ll~~g 163 (228)
T 2dzn_A 145 HRAASVGSLKLIELLCGLG 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHhcC
Confidence 98 4667888888876
No 37
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.91 E-value=1.2e-24 Score=176.38 Aligned_cols=139 Identities=16% Similarity=0.167 Sum_probs=129.0
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC---------------Cccc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV---------------DTFH 65 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~---------------~~~~ 65 (199)
|..|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..|+ ++ |.+|
T Consensus 17 d~~g~t~L~~Aa~~g~---------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~ 87 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQ---------TDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKP 87 (364)
T ss_dssp CHHHHHHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCH
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCH
Confidence 6789999999999999 999999999999999999999999999999998 33 6789
Q ss_pred ccccccCCcHHHHHHHHhc----CCCCcc-----------------CCCCCCcHHHHHHhcc--CcccchhhHHHHHHHH
Q psy8420 66 TNDVCKFPCAATTKLLIRC----GADVNA-----------------KDYQGNTPLHIIATYE--RAISDFQTLHTIILDL 122 (199)
Q Consensus 66 l~~~~~~~~~~~~~~Ll~~----ga~v~~-----------------~d~~g~tpl~~a~~~~--~~~~~~~~~~~~~~~L 122 (199)
++.|+..++.+++++|++. |++++. .+..|.||||+|+..+ +. +++++|
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~--------~~v~~L 159 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYL--------EMIKIL 159 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGH--------HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchH--------HHHHHH
Confidence 9999999999999999998 888887 8899999999999999 89 999999
Q ss_pred HHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhccc
Q psy8420 123 TENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTK 157 (199)
Q Consensus 123 l~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~ 157 (199)
+++|++++..|..|.||||+ ...++++.|++.+.+
T Consensus 160 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 198 (364)
T 3ljn_A 160 VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPS 198 (364)
T ss_dssp HHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSC
T ss_pred HHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 99999999999999999998 567789999987555
No 38
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.91 E-value=6.1e-24 Score=162.22 Aligned_cols=142 Identities=21% Similarity=0.251 Sum_probs=128.9
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------- 61 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------- 61 (199)
|..|.||||+|+..++ .++++.|++.|++++.++..|.||||+|+..++ ++
T Consensus 43 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~ 113 (241)
T 1k1a_A 43 NNLRQTPLHLAVITTL---------PSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113 (241)
T ss_dssp CTTSCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCC
T ss_pred cccCCCHHHHHHHcCC---------HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccC
Confidence 5679999999999999 999999999999999999999999999999887 22
Q ss_pred --CcccccccccCCcHHHHHHHHhcCCCCccCC-CCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCC
Q psy8420 62 --DTFHTNDVCKFPCAATTKLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138 (199)
Q Consensus 62 --~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d-~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~t 138 (199)
+.+|++.|+..++.+++++|++.|++++..+ ..|.||||+|+..++. +++++|+++|++++..|..|.|
T Consensus 114 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t 185 (241)
T 1k1a_A 114 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL--------SMVQLLLQHGANVNAQMYSGSS 185 (241)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCBCTTSCB
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH--------HHHHHHHHcCCCCCCcCCCCCC
Confidence 5678888999999999999999999999998 8899999999999999 9999999999999999999999
Q ss_pred cccc----ccchHHHHHHhhcccchh
Q psy8420 139 PIQA----TTTGVADLILRTLTKINL 160 (199)
Q Consensus 139 pl~~----~~~~~~~~ll~~~~~~~~ 160 (199)
|||+ ...++++.|++.+.+...
T Consensus 186 ~L~~A~~~~~~~~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 186 ALHSASGRGLLPLVRTLVRSGADSSL 211 (241)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCC
Confidence 9999 566788899988766543
No 39
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.90 E-value=3.9e-24 Score=165.33 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=121.8
Q ss_pred chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccc----ccCCCchHHHHHHhc---CC-CC--------------
Q psy8420 4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSV----ASRQNQSLLHLCVNY---ET-PV-------------- 61 (199)
Q Consensus 4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~----~~~~g~t~L~~a~~~---~~-~~-------------- 61 (199)
.|.||||+|+..|++... ..+++.++..|++++. ++..|.||||+|+.. |+ ++
T Consensus 1 ~G~t~L~~A~~~g~~~~v-----~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~ 75 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEEL-----TGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNP 75 (256)
T ss_dssp CCHHHHHHHHHHTCGGGG-----TTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCS
T ss_pred CCccHHHHHHHcCCHHHH-----HHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccch
Confidence 489999999999992110 1367778889999998 899999999999998 77 33
Q ss_pred --------------CcccccccccCCcHHHHHHHHhcCCCCccCCCC-------------CCcHHHHHHhccCcccchhh
Q psy8420 62 --------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQ-------------GNTPLHIIATYERAISDFQT 114 (199)
Q Consensus 62 --------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~-------------g~tpl~~a~~~~~~~~~~~~ 114 (199)
|.+|++.|+..++.+++++|+++|++++..+.. |.||||+|+..++.
T Consensus 76 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~------ 149 (256)
T 2etb_A 76 KPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW------ 149 (256)
T ss_dssp SCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCH------
T ss_pred hhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCH------
Confidence 457899999999999999999999999999886 99999999999999
Q ss_pred HHHHHHHHHH---cCCCCCCCCCCCCCccccc------cch-------HHHHHHhhcccc
Q psy8420 115 LHTIILDLTE---NGAHMDTVNNKGLTPIQAT------TTG-------VADLILRTLTKI 158 (199)
Q Consensus 115 ~~~~~~~Ll~---~ga~~~~~~~~g~tpl~~~------~~~-------~~~~ll~~~~~~ 158 (199)
+++++|++ .|++++.+|..|.||||++ ..+ +++.|++.+.+.
T Consensus 150 --~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~ 207 (256)
T 2etb_A 150 --DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL 207 (256)
T ss_dssp --HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence 99999999 9999999999999999982 122 777888875554
No 40
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.90 E-value=1.6e-23 Score=151.97 Aligned_cols=121 Identities=21% Similarity=0.258 Sum_probs=114.6
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL 81 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 81 (199)
|..|.||||+|+..++ .++++.|++.|++++.++..|.||||+|+.. ++.+++++|
T Consensus 33 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~L 88 (167)
T 3v31_A 33 DEEGFTPLMWAAAHGQ---------IAVVEFLLQNGADPQLLGKGRESALSLACSK---------------GYTDIVKML 88 (167)
T ss_dssp CTTSCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH---------------TCHHHHHHH
T ss_pred CCCCCCHHHHHHHCCC---------HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc---------------CCHHHHHHH
Confidence 5789999999999999 9999999999999999999999999999999 999999999
Q ss_pred HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420 82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT 154 (199)
Q Consensus 82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~ 154 (199)
+++|++++.+|..|.||||+|+..++. +++++|+++|++++.+|..|.||+++ ...++++.|++.
T Consensus 89 l~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 89 LDCGVDVNEYDWNGGTPLLYAVHGNHV--------KCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157 (167)
T ss_dssp HHHTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHCCCCCCcCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999998 556677777776
No 41
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.90 E-value=9.9e-24 Score=159.55 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=126.8
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCC-CcccccCCCchHHHHHHhcCC-CC-----------------C
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLN-KLSVASRQNQSLLHLCVNYET-PV-----------------D 62 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~-~i~~~~~~g~t~L~~a~~~~~-~~-----------------~ 62 (199)
|..|.||||+|+..++ .++++.|++.+. +++.++..|.||||+|+..++ ++ |
T Consensus 55 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 125 (223)
T 2f8y_A 55 DNMGRTPLHAAVSADA---------QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 125 (223)
T ss_dssp CTTSCCHHHHHHHTTC---------HHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTS
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCC
Confidence 5678999999999999 899999999876 888889999999999998888 22 6
Q ss_pred cccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420 63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA 142 (199)
Q Consensus 63 ~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 142 (199)
.+|++.|+..++.+++++|+++|++++.+|..|.||||+|+..++. +++++|+++|++++..|..|.||+++
T Consensus 126 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~t~l~~ 197 (223)
T 2f8y_A 126 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY--------ETAKVLLDHFANRDITDHMDRLPRDI 197 (223)
T ss_dssp CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCH--------HHHHHHHHcCCCCccccccCCCHHHH
Confidence 7889999999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred ----ccchHHHHHHhhcccch
Q psy8420 143 ----TTTGVADLILRTLTKIN 159 (199)
Q Consensus 143 ----~~~~~~~~ll~~~~~~~ 159 (199)
...++++.|++.+....
T Consensus 198 A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 198 AQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp HHHTTCHHHHHHHHHTTCSSC
T ss_pred HHHhcchHHHHHHHHcCCCcc
Confidence 55678888888765543
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.90 E-value=3.8e-24 Score=162.86 Aligned_cols=139 Identities=22% Similarity=0.201 Sum_probs=123.0
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCc-----ccccCCCchHHHHHHhcCC-CC--------------
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKL-----SVASRQNQSLLHLCVNYET-PV-------------- 61 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i-----~~~~~~g~t~L~~a~~~~~-~~-------------- 61 (199)
|..|.||||+|+..|+ .++++.|++.|+++ +.++..|.||||+|+..++ ++
T Consensus 34 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 104 (232)
T 2rfa_A 34 GAMGETALHIAALYDN---------LEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSAR 104 (232)
T ss_dssp CTTSCCHHHHHHHTTC---------HHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcc
Confidence 5789999999999999 89999999999887 6677789999999999887 22
Q ss_pred ----------------CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHH----HH
Q psy8420 62 ----------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTII----LD 121 (199)
Q Consensus 62 ----------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~----~~ 121 (199)
|.+|++.|+..++.+++++|+++|++++.+|..|.||||+|+..++. +++ ++
T Consensus 105 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~--------~~~~~i~~~ 176 (232)
T 2rfa_A 105 ATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNK--------TFACQMYNL 176 (232)
T ss_dssp CCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCH--------HHHHHHHHH
T ss_pred cCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCh--------HHHHHHHHH
Confidence 45688889999999999999999999999999999999999999988 766 99
Q ss_pred HHHcCCCC------CCCCCCCCCcccc----ccchHHHHHHhhccc
Q psy8420 122 LTENGAHM------DTVNNKGLTPIQA----TTTGVADLILRTLTK 157 (199)
Q Consensus 122 Ll~~ga~~------~~~~~~g~tpl~~----~~~~~~~~ll~~~~~ 157 (199)
|+++|++. +.+|..|.||||+ ...++++.|++.+..
T Consensus 177 Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 177 LLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 99999988 5899999999999 566788888887544
No 43
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.90 E-value=9.9e-24 Score=163.11 Aligned_cols=136 Identities=14% Similarity=0.092 Sum_probs=123.9
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCC-CcccccCCCchHHHHHHhcCC-CC-----------------C
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLN-KLSVASRQNQSLLHLCVNYET-PV-----------------D 62 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~-~i~~~~~~g~t~L~~a~~~~~-~~-----------------~ 62 (199)
|..|.||||+|+..++ .++++.|++.|. +++.++..|.||||+|+..++ ++ |
T Consensus 87 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g 157 (253)
T 1yyh_A 87 DNMGRTPLHAAVSADA---------QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 157 (253)
T ss_dssp CTTSCCHHHHHHHHTC---------HHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTS
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCC
Confidence 5779999999999999 999999999986 899999999999999999988 33 6
Q ss_pred cccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420 63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA 142 (199)
Q Consensus 63 ~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 142 (199)
.+|++.|+..++.+++++|+++|++++.+|..|.||||+|+..++. +++++|+++|++++.+|..|.||+++
T Consensus 158 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~--------~~v~~Ll~~ga~~~~~d~~g~tpl~~ 229 (253)
T 1yyh_A 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY--------ETAKVLLDHFANRDITDHMDRLPRDI 229 (253)
T ss_dssp CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCH--------HHHHHHHHcCCCccccccCCCCHHHH
Confidence 8999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred ----ccchHHHHHHhh
Q psy8420 143 ----TTTGVADLILRT 154 (199)
Q Consensus 143 ----~~~~~~~~ll~~ 154 (199)
...++++.|...
T Consensus 230 A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 230 AQERMHHDIVRLLDLE 245 (253)
T ss_dssp HHHTTCHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHH
Confidence 455566666554
No 44
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.90 E-value=5.7e-24 Score=155.62 Aligned_cols=114 Identities=19% Similarity=0.206 Sum_probs=95.2
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT 63 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~ 63 (199)
|..|.||||+|+..+. .++++.|++.|++++.+|..|.||||+|+..|+ ++ |+
T Consensus 34 d~~g~t~l~~a~~~~~---------~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~ 104 (169)
T 4gpm_A 34 DSDGRTPLHHAAENGH---------KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR 104 (169)
T ss_dssp CTTSCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCC
Confidence 6788999999999998 889999999999999999999999999998877 22 67
Q ss_pred ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCC
Q psy8420 64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV 132 (199)
Q Consensus 64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~ 132 (199)
+|++.|+..++.+++++|+++|++++.+|..|+||||+|+..++. +++++|+++||+++..
T Consensus 105 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~--------~iv~~Ll~~GA~ie~~ 165 (169)
T 4gpm_A 105 TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNE--------EVVKLLEKQGGWLEHH 165 (169)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHTC-------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH--------HHHHHHHHCCCCcCCC
Confidence 888888888999999999999999999999999999999999988 9999999999988653
No 45
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.90 E-value=5.6e-24 Score=170.73 Aligned_cols=125 Identities=22% Similarity=0.198 Sum_probs=115.2
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC----CC----------------
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET----PV---------------- 61 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~----~~---------------- 61 (199)
|..|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..|+ ++
T Consensus 128 d~~g~TpLh~Aa~~g~---------~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d 198 (327)
T 1sw6_A 128 DEHGNTPLHWLTSIAN---------LELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED 198 (327)
T ss_dssp STTCCCHHHHHHHTTC---------HHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred CCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCC
Confidence 6789999999999999 999999999999999999999999999999754 11
Q ss_pred --Cccccccccc----CCcHHHHHHHHhcCC---------------------------------------------CCcc
Q psy8420 62 --DTFHTNDVCK----FPCAATTKLLIRCGA---------------------------------------------DVNA 90 (199)
Q Consensus 62 --~~~~l~~~~~----~~~~~~~~~Ll~~ga---------------------------------------------~v~~ 90 (199)
|.+|++.|+. .++.+++++|++.++ +++.
T Consensus 199 ~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~ 278 (327)
T 1sw6_A 199 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA 278 (327)
T ss_dssp TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCC
Confidence 7899999998 899999999998743 5888
Q ss_pred CCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccc
Q psy8420 91 KDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQAT 143 (199)
Q Consensus 91 ~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~ 143 (199)
+|..|+||||+|+..++. +++++|+++|++++.+|..|.||||++
T Consensus 279 ~d~~G~TpLh~A~~~g~~--------~~v~~Ll~~Gad~~~~d~~G~TpL~~A 323 (327)
T 1sw6_A 279 QDSNGDTCLNIAARLGNI--------SIVDALLDYGADPFIANKSGLRPVDFG 323 (327)
T ss_dssp CCTTSCCHHHHHHHHCCH--------HHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred CCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 899999999999999999 999999999999999999999999984
No 46
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.90 E-value=1.2e-23 Score=160.52 Aligned_cols=143 Identities=20% Similarity=0.165 Sum_probs=131.5
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC------------------C
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------D 62 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------~ 62 (199)
+..|.||||+|+..++ .++++.|++.|++++.++..|.||||+|+..++ ++ |
T Consensus 41 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g 111 (237)
T 3b7b_A 41 SEDQRTPLMEAAENNH---------LEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGG 111 (237)
T ss_dssp CTTCCCHHHHHHHTTC---------HHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTS
T ss_pred CCCCCCHHHHHHHhCC---------HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCC
Confidence 5679999999999999 999999999999999999999999999999988 22 5
Q ss_pred cccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420 63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA 142 (199)
Q Consensus 63 ~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 142 (199)
.+|++.|+..++.+++++|++.|++++.++..|.||||+|+..++. +++++|+++|++++..|..|.||||+
T Consensus 112 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--------~~~~~Ll~~g~~~~~~~~~g~t~L~~ 183 (237)
T 3b7b_A 112 WTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV--------DIAEILLAAKCDLHAVNIHGDSPLHI 183 (237)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH--------HHHHHHHTTTCCTTCCCTTCCCHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH--------HHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 6889999999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred ----ccchHHHHHHhhcccchhH
Q psy8420 143 ----TTTGVADLILRTLTKINLK 161 (199)
Q Consensus 143 ----~~~~~~~~ll~~~~~~~~~ 161 (199)
...++++.|++.+.+....
T Consensus 184 A~~~~~~~~v~~Ll~~gad~~~~ 206 (237)
T 3b7b_A 184 AARENRYDCVVLFLSRDSDVTLK 206 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCTTCC
T ss_pred HHHhCCHhHHHHHHHcCCCCCcc
Confidence 5667889999987765543
No 47
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.90 E-value=5.7e-25 Score=168.11 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=140.3
Q ss_pred CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcC----CCcccccCCCchHHHHHHhcCC-CC--------------
Q psy8420 1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSL----NKLSVASRQNQSLLHLCVNYET-PV-------------- 61 (199)
Q Consensus 1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g----~~i~~~~~~g~t~L~~a~~~~~-~~-------------- 61 (199)
.|++|.||||+|+..|+ .++++.|++.+ ++++.++..|.||||+|+..++ ++
T Consensus 4 ~d~~g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 74 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEE---------KALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74 (236)
T ss_dssp ---CCCCTTHHHHHTTC---------SSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCC
T ss_pred CCCCCCchhHHHHHcCC---------hhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 37899999999999999 67777777665 4799999999999999999988 22
Q ss_pred ---CcccccccccCCcHHHHHHHHhcCCC------CccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCC
Q psy8420 62 ---DTFHTNDVCKFPCAATTKLLIRCGAD------VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV 132 (199)
Q Consensus 62 ---~~~~l~~~~~~~~~~~~~~Ll~~ga~------v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~ 132 (199)
|.+|++.|+..++.+++++|++.|++ ++..+..|.||||+|+..++. +++++|+++|++++.+
T Consensus 75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~ 146 (236)
T 1ikn_D 75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL--------GIVELLVSLGADVNAQ 146 (236)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCH--------HHHHHHHHHTCCTTCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCC
Confidence 67899999999999999999999876 577888999999999999999 9999999999999999
Q ss_pred CC-CCCCcccc----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhc
Q psy8420 133 NN-KGLTPIQA----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALD 195 (199)
Q Consensus 133 ~~-~g~tpl~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (199)
+. .|.||||+ ...++++.|++.+.+.......+.....+.+. .-..++.+++..+|++..
T Consensus 147 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~---~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG---RPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTT---SSCHHHHHHHHTTSCGGG
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHc---cCchHHHHHHHHcchhhh
Confidence 98 99999999 56778999999877755433222222222221 124567889999998765
No 48
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.90 E-value=1.1e-23 Score=163.99 Aligned_cols=123 Identities=17% Similarity=0.156 Sum_probs=60.4
Q ss_pred cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Ccc
Q psy8420 3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DTF 64 (199)
Q Consensus 3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~~ 64 (199)
..|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..|+ ++ |.+
T Consensus 37 ~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 107 (285)
T 1wdy_A 37 EGGWTPLHNAVQMSR---------EDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT 107 (285)
T ss_dssp TTCCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCB
T ss_pred CCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCC
Confidence 345555555555555 555555555555555555555555555555544 11 334
Q ss_pred cccccccCCcHHHHHHHHhcCCCCccC----------CCCCCcHHHHHHhccCcccchhhHHHHHHHHHHc-CCCCCCCC
Q psy8420 65 HTNDVCKFPCAATTKLLIRCGADVNAK----------DYQGNTPLHIIATYERAISDFQTLHTIILDLTEN-GAHMDTVN 133 (199)
Q Consensus 65 ~l~~~~~~~~~~~~~~Ll~~ga~v~~~----------d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~-ga~~~~~~ 133 (199)
|++.|+..++.+++++|++.|++++.. +..|.||||+|+..++. +++++|++. |++++..+
T Consensus 108 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~~~~~~~~~~ 179 (285)
T 1wdy_A 108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV--------EVLKILLDEMGADVNACD 179 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH--------HHHHHHHHTSCCCTTCCC
T ss_pred HHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCH--------HHHHHHHHhcCCCCCccC
Confidence 444444445555555555555444444 34444455554444444 444444443 44444444
Q ss_pred CCCCCcccc
Q psy8420 134 NKGLTPIQA 142 (199)
Q Consensus 134 ~~g~tpl~~ 142 (199)
..|.||||.
T Consensus 180 ~~g~t~l~~ 188 (285)
T 1wdy_A 180 NMGRNALIH 188 (285)
T ss_dssp TTSCCHHHH
T ss_pred CCCCCHHHH
Confidence 444444443
No 49
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.90 E-value=1e-23 Score=168.95 Aligned_cols=175 Identities=15% Similarity=0.127 Sum_probs=135.0
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT 63 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~ 63 (199)
|..|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..|+ ++ |.
T Consensus 55 d~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~ 125 (351)
T 3utm_A 55 DGRKSTPLHLAAGYNR---------VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF 125 (351)
T ss_dssp STTCCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC
Confidence 5679999999999999 999999999999999999999999999999988 33 56
Q ss_pred ccccccccCCcHHHHHHHHhcCCCCccCC---------------------------------------------------
Q psy8420 64 FHTNDVCKFPCAATTKLLIRCGADVNAKD--------------------------------------------------- 92 (199)
Q Consensus 64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d--------------------------------------------------- 92 (199)
+|++.|+..++.+++++|+++|++++..+
T Consensus 126 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (351)
T 3utm_A 126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF 205 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccc
Confidence 89999999999999999999999988655
Q ss_pred ---CCCCcHHHHHHhc---cCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchhHH
Q psy8420 93 ---YQGNTPLHIIATY---ERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINLKC 162 (199)
Q Consensus 93 ---~~g~tpl~~a~~~---~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~~~ 162 (199)
..|.||||+|+.. +.. +++++|++.|++++.+|..|.||||+ ...++++.|++.+.+.....
T Consensus 206 ~~~~~~~t~L~~A~~~~~~~~~--------~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d 277 (351)
T 3utm_A 206 KQPQSHETALHCAVASLHPKRK--------QVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277 (351)
T ss_dssp CCTTTCCCHHHHHHHCCSTTHH--------HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred cCCCCCCCHHHHHHHHhCccHH--------HHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 4456788888877 335 88999999999999999999999998 55678888888866544321
Q ss_pred HHHHHHhhccccCCCCCchhHHHHHHHhhhhhcc
Q psy8420 163 LAAKVITQNNITYKGLVPHDLESFIELHGTALDK 196 (199)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 196 (199)
..+.....+.+.. -..++.++|..+|++++.
T Consensus 278 ~~g~t~L~~A~~~---~~~~~v~~Ll~~gad~~~ 308 (351)
T 3utm_A 278 SLGQTALHRAALA---GHLQTCRLLLSYGSDPSI 308 (351)
T ss_dssp TTSCCHHHHHHHH---TCHHHHHHHHHTTCCTTC
T ss_pred CCCCCHHHHHHHc---CcHHHHHHHHHcCCCCCC
Confidence 1111110111110 124466677777776654
No 50
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.90 E-value=3.5e-23 Score=151.95 Aligned_cols=141 Identities=18% Similarity=0.196 Sum_probs=110.9
Q ss_pred CCchHHHHHHhcCC-CC------------------CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhcc
Q psy8420 46 QNQSLLHLCVNYET-PV------------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYE 106 (199)
Q Consensus 46 ~g~t~L~~a~~~~~-~~------------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~ 106 (199)
.+.++|+.|+..|+ ++ |.+|++.|+..++.+++++|++.|++++..|..|.||||+|+..+
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 46788999998887 22 678999999999999999999999999999999999999999999
Q ss_pred CcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchh
Q psy8420 107 RAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHD 182 (199)
Q Consensus 107 ~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (199)
+. +++++|+++|++++..|..|.||||+ ...++++.|++.+.+.......+......... .....
T Consensus 84 ~~--------~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~---~~~~~ 152 (179)
T 3f6q_A 84 HR--------DIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA---PLREL 152 (179)
T ss_dssp CH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCH---HHHHH
T ss_pred CH--------HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHH---HHHHH
Confidence 99 99999999999999999999999999 56678999999877654432211111111111 12345
Q ss_pred HHHHHHHhhhhhccc
Q psy8420 183 LESFIELHGTALDKT 197 (199)
Q Consensus 183 l~~~~~~~~~~~~~~ 197 (199)
+.+++..+|++++..
T Consensus 153 ~~~~L~~~g~~~~~~ 167 (179)
T 3f6q_A 153 LRERAEKMGQNLNRI 167 (179)
T ss_dssp HHHHHHHTTCCCSCB
T ss_pred HHHHHHHhhcCcccC
Confidence 788888889888753
No 51
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.90 E-value=7.1e-23 Score=156.63 Aligned_cols=127 Identities=22% Similarity=0.262 Sum_probs=116.9
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL 81 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 81 (199)
+.+|.||||+|+..|+ .++++.|++.|++++.+|..|.||||+|+.. ++.+++++|
T Consensus 18 ~~~~~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~---------------g~~~~v~~L 73 (229)
T 2vge_A 18 RLNPLVLLLDAALTGE---------LEVVQQAVKEMNDPSQPNEEGITALHNAICG---------------ANYSIVDFL 73 (229)
T ss_dssp TSCHHHHHHHHHHHTC---------HHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHH
T ss_pred ccchhHHHHHHHHcCC---------HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc---------------CCHHHHHHH
Confidence 4678999999999999 9999999999999999999999999999999 999999999
Q ss_pred HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCC-CCCCCccccc------cchHHHHHHhh
Q psy8420 82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN-NKGLTPIQAT------TTGVADLILRT 154 (199)
Q Consensus 82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~-~~g~tpl~~~------~~~~~~~ll~~ 154 (199)
++.|++++.+|..|+||||+|+..++. +++++|+++|++++..+ ..|.||||++ ..++++.|++.
T Consensus 74 l~~ga~~n~~d~~g~tpLh~A~~~g~~--------~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ 145 (229)
T 2vge_A 74 ITAGANVNSPDSHGWTPLHCAASCNDT--------VICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV 145 (229)
T ss_dssp HHTTCCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc
Confidence 999999999999999999999999999 99999999999999996 6999999984 34578888887
Q ss_pred cccchh
Q psy8420 155 LTKINL 160 (199)
Q Consensus 155 ~~~~~~ 160 (199)
+.+...
T Consensus 146 ga~~~~ 151 (229)
T 2vge_A 146 EQSMGL 151 (229)
T ss_dssp HHHTTT
T ss_pred CCCccc
Confidence 665444
No 52
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.89 E-value=9e-24 Score=172.32 Aligned_cols=172 Identities=19% Similarity=0.198 Sum_probs=139.9
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------- 61 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------- 61 (199)
|..|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..|+ ++
T Consensus 163 d~~g~TpL~~A~~~g~---------~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~ 233 (373)
T 2fo1_E 163 DCDENTPLMLAVLARR---------RRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233 (373)
T ss_dssp CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred CCCCCCHHHHHHHcCh---------HHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC
Confidence 6789999999999999 999999999999999999999999999999987 22
Q ss_pred -CcccccccccCC---cHHHHHHHHhcCCCCcc--------CCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcC-CC
Q psy8420 62 -DTFHTNDVCKFP---CAATTKLLIRCGADVNA--------KDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG-AH 128 (199)
Q Consensus 62 -~~~~l~~~~~~~---~~~~~~~Ll~~ga~v~~--------~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g-a~ 128 (199)
|.+|++.|+..+ +.+++++|++.|++++. .|..|.||||+|+..++. +++++|++.+ ++
T Consensus 234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~--------~~v~~Ll~~~~~~ 305 (373)
T 2fo1_E 234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM--------PIVKYLVGEKGSN 305 (373)
T ss_dssp TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCH--------HHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCH--------HHHHHHHHhcCCC
Confidence 678899999887 89999999999999986 677999999999999999 9999999875 99
Q ss_pred CCCCCCCCCCcccc----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhh
Q psy8420 129 MDTVNNKGLTPIQA----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTA 193 (199)
Q Consensus 129 ~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (199)
++.+|..|.||||+ ...++++.|++.+++.......+.....+.+.. -..++.++|..++.+
T Consensus 306 ~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~---g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN---NHHNIVDIFDRCRPE 371 (373)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHT---TCHHHHHHHHTTC--
T ss_pred ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHc---CCHHHHHHHHhcCcc
Confidence 99999999999999 567889999998776544322111111111111 135567777777654
No 53
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=1.8e-23 Score=158.51 Aligned_cols=111 Identities=15% Similarity=0.092 Sum_probs=106.7
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL 81 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 81 (199)
+..|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+.. ++.+++++|
T Consensus 70 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~L 125 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGN---------LSWLRECLDNRVGVNGLDKAGSTALYWACHG---------------GHKDIVEML 125 (222)
T ss_dssp EEEESCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHH
T ss_pred ccccccccccccccCc---------HHHHHHHHhCCCCccccCCCCCCHHHHHHHc---------------CCHHHHHHH
Confidence 4578999999999999 9999999999999999999999999999999 999999999
Q ss_pred Hhc-CCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccccc
Q psy8420 82 IRC-GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATT 144 (199)
Q Consensus 82 l~~-ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~~ 144 (199)
++. |++++.+|..|+||||+|+..++. +++++|+++|++++.+|..|.|||+++.
T Consensus 126 l~~~g~~~~~~d~~g~tpL~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 181 (222)
T 3ehr_A 126 FTQPNIELNQQNKLGDTALHAAAWKGYA--------DIVQLLLAKGARTDLRNIEKKLAFDMAT 181 (222)
T ss_dssp TTSTTCCCCCCCTTSCCHHHHHHHHTCH--------HHHHHHHHHTCCSCCCCTTSCCHHHHCC
T ss_pred HcCCCCCccccCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCccccCCCCCHHHHhc
Confidence 998 999999999999999999999999 9999999999999999999999999943
No 54
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=3.9e-24 Score=158.83 Aligned_cols=135 Identities=12% Similarity=0.019 Sum_probs=103.2
Q ss_pred cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420 3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI 82 (199)
Q Consensus 3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 82 (199)
..|+||||+|+..++. +...++++.|++.|+++|.++..|.||||+|+..++ .......+++++|+
T Consensus 36 ~~g~T~Lh~A~~~~~~-----~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~---------~~~~~~~~iv~~Ll 101 (186)
T 3t8k_A 36 VLKSNILYDVLRNNND-----EARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG---------NDITGTTELCKIFL 101 (186)
T ss_dssp HHTTTHHHHHTTCSCH-----HHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT---------TCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCc-----chHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC---------cchhhHHHHHHHHH
Confidence 5699999999988750 112468999999999999999999999999998821 00001268899999
Q ss_pred hcCCCCccCCCCCC-cHHHHHHhccCcccchhhHHHHHHHHHH-cCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420 83 RCGADVNAKDYQGN-TPLHIIATYERAISDFQTLHTIILDLTE-NGAHMDTVNNKGLTPIQA----TTTGVADLILRT 154 (199)
Q Consensus 83 ~~ga~v~~~d~~g~-tpl~~a~~~~~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~ 154 (199)
++|+++|.+|..|. ||||+|+..+.. .....+++++|++ +|++++.+|..|.||||+ ...+.++.|.+.
T Consensus 102 ~~Gadin~~d~~g~ttpLh~A~~~~~~---~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 102 EKGADITALYKPYKIVVFKNIFNYFVD---ENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp HTTCCSSSCBGGGTBCTTGGGGGCCSC---HHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred HCCCCCCccCCCcCchHHHHHHHcCCC---hhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999 999999884432 1112268899999 999999999999999998 333445555543
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.89 E-value=6.7e-24 Score=164.25 Aligned_cols=177 Identities=19% Similarity=0.141 Sum_probs=135.8
Q ss_pred CccchhhHHHHHHHHhhccccCChhHHH----HHHHHHHcCCCccccc----CCCchHHHHHH---hcCC-CC-------
Q psy8420 1 MEDNLVTSLYLLVILTKVIKNISEEEEY----RIYKLVFSLNKLSVAS----RQNQSLLHLCV---NYET-PV------- 61 (199)
Q Consensus 1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~----~~~~ll~~g~~i~~~~----~~g~t~L~~a~---~~~~-~~------- 61 (199)
|++.|.|+||.|+..|. .+ +++.++..|++++.++ ..|.||||+|+ ..|+ ++
T Consensus 1 ~~~~~~~~L~~A~~~g~---------~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 1 MKVFNRPILFDIVSRGS---------PDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp CCCCCHHHHHHHHHHTC---------GGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred CccchHHHHHHHHHhCC---------HHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 57899999999999999 56 4555555999999776 66999999999 4455 22
Q ss_pred ---------------------CcccccccccCCcHHHHHHHHhcCCCCccCC--------------CCCCcHHHHHHhcc
Q psy8420 62 ---------------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKD--------------YQGNTPLHIIATYE 106 (199)
Q Consensus 62 ---------------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d--------------~~g~tpl~~a~~~~ 106 (199)
|.+|++.|+..++.+++++|+++|++++..+ ..|.||||+|+..+
T Consensus 72 g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g 151 (260)
T 3jxi_A 72 AEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151 (260)
T ss_dssp HHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTT
T ss_pred cccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcC
Confidence 5689999999999999999999999999998 68999999999999
Q ss_pred CcccchhhHHHHHHHHHH---cCCCCCCCCCCCCCcccccc-------------chHHHHHHhhcccchh-------HHH
Q psy8420 107 RAISDFQTLHTIILDLTE---NGAHMDTVNNKGLTPIQATT-------------TGVADLILRTLTKINL-------KCL 163 (199)
Q Consensus 107 ~~~~~~~~~~~~~~~Ll~---~ga~~~~~~~~g~tpl~~~~-------------~~~~~~ll~~~~~~~~-------~~~ 163 (199)
+. +++++|++ .|++++.+|..|.||||++. .++++.|++.+.+... ...
T Consensus 152 ~~--------~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~ 223 (260)
T 3jxi_A 152 QP--------HIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN 223 (260)
T ss_dssp CH--------HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT
T ss_pred CH--------HHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccC
Confidence 99 99999999 99999999999999999933 3677778877555311 100
Q ss_pred HHHHHhhccccCCCCCchhHHHHHHHhhhhhccc
Q psy8420 164 AAKVITQNNITYKGLVPHDLESFIELHGTALDKT 197 (199)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 197 (199)
.+.....+... . -..++.++|..+|..+..+
T Consensus 224 ~g~tpL~~A~~-~--g~~~~v~~Ll~~g~~~~~~ 254 (260)
T 3jxi_A 224 DGLSPLMMAAK-T--GKIGIFQHIIRREIADAAA 254 (260)
T ss_dssp TSCCHHHHHHH-T--TCHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHH-c--CCHHHHHHHHHhCCCcccc
Confidence 01000000111 1 1345778888888876543
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.89 E-value=3.1e-23 Score=151.15 Aligned_cols=158 Identities=13% Similarity=0.096 Sum_probs=129.5
Q ss_pred hhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCC-cccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420 5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNK-LSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR 83 (199)
Q Consensus 5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~-i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~ 83 (199)
+.||||.|+..|. .+.++.++..+.+ ++.++..|.||||+|+.. ++.+++++|++
T Consensus 2 ~~~~L~~A~~~g~---------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~Ll~ 57 (172)
T 3v30_A 2 DSLSIHQLAAQGE---------LDQLKEHLRKGDNLVNKPDERGFTPLIWASAF---------------GEIETVRFLLE 57 (172)
T ss_dssp --CCHHHHHHTTC---------HHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHT---------------TCHHHHHHHHH
T ss_pred chhhHHHHHHcCC---------HHHHHHHHHcCcccccCCCCCCCCHHHHHHHc---------------CCHHHHHHHHH
Confidence 5789999999999 9999999999877 889999999999999999 99999999999
Q ss_pred cCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccch
Q psy8420 84 CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKIN 159 (199)
Q Consensus 84 ~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~ 159 (199)
+|++++..+..|.||||+|+..++. +++++|+++|++++.+|..|.||||+ ...++++.|++.+.+..
T Consensus 58 ~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 129 (172)
T 3v30_A 58 WGADPHILAKERESALSLASTGGYT--------DIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT 129 (172)
T ss_dssp HTCCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred cCCCchhhcccCCCHHHHHHHCCCH--------HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence 9999999999999999999999999 99999999999999999999999999 56678999998876654
Q ss_pred hHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhccc
Q psy8420 160 LKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDKT 197 (199)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 197 (199)
.....+.......+.. -..++.+++..+|.++...
T Consensus 130 ~~~~~g~t~l~~A~~~---~~~~~~~~L~~~~~~~~~~ 164 (172)
T 3v30_A 130 TEADSGYTPMDLAVAL---GYRKVQQVIENHILKLFQS 164 (172)
T ss_dssp CCCTTSCCHHHHHHHH---TCHHHHHHHHHHHHHHSCC
T ss_pred ccCCCCCCHHHHHHHh---CcHHHHHHHHHHHHHHhcc
Confidence 3221111111111111 1356778888888876653
No 57
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.89 E-value=4.9e-23 Score=147.64 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHhhccccCChhHHHHHHHHHHc-CCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420 5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFS-LNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR 83 (199)
Q Consensus 5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~-g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~ 83 (199)
+.||||.|+..|+ .+.++.|++. +.+++.++..|.||||+ +.. ++.+++++|++
T Consensus 2 ~~~~L~~A~~~g~---------~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~---------------~~~~~v~~Ll~ 56 (156)
T 1bd8_A 2 AGDRLSGAAARGD---------VQEVRRLLHRELVHPDALNRFGKTALQV-MMF---------------GSTAIALELLK 56 (156)
T ss_dssp HHHHHHHHHHHTC---------HHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCT---------------TCHHHHHHHHH
T ss_pred cchHHHHHHHhCC---------HHHHHHHHHhhCcCccccCCCCCcHHHH-HHc---------------CCHHHHHHHHH
Confidence 5688888888888 8888888887 44888888888888888 777 66666666666
Q ss_pred cCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420 84 CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT 154 (199)
Q Consensus 84 ~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~ 154 (199)
.|++++.+|..|.||||+|+..++. +++++|+++|++++.+|..|.||||+ ...++++.|++.
T Consensus 57 ~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 57 QGASPNVQDTSGTSPVHDAARTGFL--------DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCCCCCcCCCCCCHHHHHHHcCcH--------HHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence 6666666666666666666666666 66666666666666666666666666 444556666654
No 58
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.89 E-value=1.5e-23 Score=162.25 Aligned_cols=132 Identities=19% Similarity=0.154 Sum_probs=115.1
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccccc--------------CCCchHHHHHHhcCCCCCccccc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVAS--------------RQNQSLLHLCVNYETPVDTFHTN 67 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~--------------~~g~t~L~~a~~~~~~~~~~~l~ 67 (199)
|..|.||||+|+..|+ .++++.|++.|++++.++ ..|.||||+|+..
T Consensus 90 d~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~---------- 150 (260)
T 3jxi_A 90 YYRGQTALHIAIERRC---------KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACT---------- 150 (260)
T ss_dssp SEESBCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHT----------
T ss_pred ccCCCCHHHHHHHcCC---------HHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHc----------
Confidence 3489999999999999 999999999999999998 6899999999999
Q ss_pred ccccCCcHHHHHHHHh---cCCCCccCCCCCCcHHHHHHhccCcc-cchhhHHHHHHHHHHcCCCC-------CCCCCCC
Q psy8420 68 DVCKFPCAATTKLLIR---CGADVNAKDYQGNTPLHIIATYERAI-SDFQTLHTIILDLTENGAHM-------DTVNNKG 136 (199)
Q Consensus 68 ~~~~~~~~~~~~~Ll~---~ga~v~~~d~~g~tpl~~a~~~~~~~-~~~~~~~~~~~~Ll~~ga~~-------~~~~~~g 136 (199)
++.+++++|++ .|++++.+|..|+||||+|+..++.. .+...+.+++++|+++|+++ +..|..|
T Consensus 151 -----g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g 225 (260)
T 3jxi_A 151 -----NQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG 225 (260)
T ss_dssp -----TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTS
T ss_pred -----CCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCC
Confidence 99999999999 99999999999999999999877621 11111128999999999998 7799999
Q ss_pred CCcccc----ccchHHHHHHhhccc
Q psy8420 137 LTPIQA----TTTGVADLILRTLTK 157 (199)
Q Consensus 137 ~tpl~~----~~~~~~~~ll~~~~~ 157 (199)
.||||+ ...++++.|++++..
T Consensus 226 ~tpL~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 226 LSPLMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 999999 567788999988544
No 59
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.89 E-value=7.1e-23 Score=148.24 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=109.6
Q ss_pred ccCCCchHHHHHHhcCC-CC------------------CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHH
Q psy8420 43 ASRQNQSLLHLCVNYET-PV------------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIA 103 (199)
Q Consensus 43 ~~~~g~t~L~~a~~~~~-~~------------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~ 103 (199)
.+..+.++|+.|+..|+ ++ +.+|++.|+..++.+++++|+++|++++.+|..|.||||+|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 45678899999999988 22 568999999999999999999999999999999999999999
Q ss_pred hccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCC
Q psy8420 104 TYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLV 179 (199)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (199)
..++. +++++|+++|++++..|..|.||||+ ...++++.|++.+.+.......+........ . -
T Consensus 84 ~~~~~--------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~--~--~ 151 (165)
T 3twr_A 84 SYGHY--------EVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK--D--G 151 (165)
T ss_dssp HTTCH--------HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSC--T--T
T ss_pred HcCcH--------HHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHh--c--C
Confidence 99999 99999999999999999999999999 5667899999987765543322222212211 1 2
Q ss_pred chhHHHHHHHhhh
Q psy8420 180 PHDLESFIELHGT 192 (199)
Q Consensus 180 ~~~l~~~~~~~~~ 192 (199)
..++.+++..+|+
T Consensus 152 ~~~i~~~L~~~gA 164 (165)
T 3twr_A 152 DTDIQDLLRGDAA 164 (165)
T ss_dssp CHHHHHHHHTC--
T ss_pred ChHHHHHHhhccc
Confidence 3467788877664
No 60
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.89 E-value=2e-23 Score=161.35 Aligned_cols=130 Identities=18% Similarity=0.155 Sum_probs=113.7
Q ss_pred cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCC-------------CchHHHHHHhcCCCCCccccccc
Q psy8420 3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQ-------------NQSLLHLCVNYETPVDTFHTNDV 69 (199)
Q Consensus 3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~-------------g~t~L~~a~~~~~~~~~~~l~~~ 69 (199)
..|.||||+|+..++ .++++.|++.|++++.++.. |.||||+|+..
T Consensus 88 ~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~------------ 146 (256)
T 2etb_A 88 YQGHSALHIAIEKRS---------LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT------------ 146 (256)
T ss_dssp TTTCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT------------
T ss_pred ccCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHc------------
Confidence 569999999999999 99999999999999999876 99999999999
Q ss_pred ccCCcHHHHHHHHh---cCCCCccCCCCCCcHHHHHHh--ccCcccchhhHHHHHHHHHHcCCCC-------CCCCCCCC
Q psy8420 70 CKFPCAATTKLLIR---CGADVNAKDYQGNTPLHIIAT--YERAISDFQTLHTIILDLTENGAHM-------DTVNNKGL 137 (199)
Q Consensus 70 ~~~~~~~~~~~Ll~---~ga~v~~~d~~g~tpl~~a~~--~~~~~~~~~~~~~~~~~Ll~~ga~~-------~~~~~~g~ 137 (199)
++.+++++|++ .|++++.+|..|+||||+|+. .++. .......+++++|+++|+++ +.+|..|.
T Consensus 147 ---~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~-~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~ 222 (256)
T 2etb_A 147 ---KQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSP-ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL 222 (256)
T ss_dssp ---TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCH-HHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSC
T ss_pred ---CCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCc-hhhHHHHHHHHHHHHcCCCcccccccccccCCCCC
Confidence 99999999999 999999999999999999998 6666 00000011999999999999 99999999
Q ss_pred Ccccc----ccchHHHHHHhhccc
Q psy8420 138 TPIQA----TTTGVADLILRTLTK 157 (199)
Q Consensus 138 tpl~~----~~~~~~~~ll~~~~~ 157 (199)
||||+ ...++++.|++++..
T Consensus 223 tpL~~A~~~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 223 TPLKLAAKEGKIEIFRHILQREFS 246 (256)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCHHHHHHHHhCCCC
Confidence 99999 566788888888544
No 61
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.89 E-value=6.3e-24 Score=167.31 Aligned_cols=166 Identities=13% Similarity=0.081 Sum_probs=90.3
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT 63 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~ 63 (199)
|..|.||||+|+..|+ .++++.|++.|++++.++ |.||||+|+..|+ ++ |.
T Consensus 28 d~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~ 96 (285)
T 3kea_A 28 DVHGHSASYYAIADNN---------VRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGN 96 (285)
T ss_dssp CTTSCCHHHHHHHTTC---------HHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence 3455566666665555 555555555555554442 4555555555544 11 34
Q ss_pred ccccccccCCcHHHHHHHHhcCCCCccCCCCC---------------------------------CcHHHHHHhccCccc
Q psy8420 64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQG---------------------------------NTPLHIIATYERAIS 110 (199)
Q Consensus 64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g---------------------------------~tpl~~a~~~~~~~~ 110 (199)
+|++.|+..++.+++++|+++|++++..+..| .||||+|+..++.
T Consensus 97 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~-- 174 (285)
T 3kea_A 97 TALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHV-- 174 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCH--
T ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChH--
Confidence 44555555555555555555555555544444 4555555555555
Q ss_pred chhhHHHHHHHHHHcCCCCCCCCCCCCCc-ccc----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHH
Q psy8420 111 DFQTLHTIILDLTENGAHMDTVNNKGLTP-IQA----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLES 185 (199)
Q Consensus 111 ~~~~~~~~~~~Ll~~ga~~~~~~~~g~tp-l~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (199)
+++++|+++|++++.+|..|.|| ||+ ...++++.|++.+++...... .+.. . -..++.+
T Consensus 175 ------~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~-~--~~~~iv~ 238 (285)
T 3kea_A 175 ------DMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVL-L--DDAEIAK 238 (285)
T ss_dssp ------HHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGT-T--TCHHHHH
T ss_pred ------HHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhh-c--CCHHHHH
Confidence 66666666666666666666665 665 445566666666555544321 0111 1 1456778
Q ss_pred HHHHhhhhhcc
Q psy8420 186 FIELHGTALDK 196 (199)
Q Consensus 186 ~~~~~~~~~~~ 196 (199)
++..+|++++.
T Consensus 239 ~Ll~~g~~~~~ 249 (285)
T 3kea_A 239 MIIEKHVEYKS 249 (285)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHcCCCCCC
Confidence 88888887653
No 62
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.89 E-value=7e-23 Score=157.30 Aligned_cols=126 Identities=20% Similarity=0.261 Sum_probs=100.1
Q ss_pred cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420 3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI 82 (199)
Q Consensus 3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 82 (199)
..|.||||.|+..|+ .++++.|++.|++++.+|..|.||||+|+.. ++.+++++|+
T Consensus 35 ~~~~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~---------------g~~~~v~~Ll 90 (239)
T 1ycs_B 35 PLPLALLLDSSLEGE---------FDLVQRIIYEVDDPSLPNDEGITALHNAVCA---------------GHTEIVKFLV 90 (239)
T ss_dssp --CHHHHHHHHHHTC---------HHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH---------------TCHHHHHHHH
T ss_pred chhhHHHHHHHHcCC---------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc---------------CCHHHHHHHH
Confidence 345677777777777 7777777777777777777777777777777 8899999999
Q ss_pred hcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCC-Cccccc------cchHHHHHHhhc
Q psy8420 83 RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGL-TPIQAT------TTGVADLILRTL 155 (199)
Q Consensus 83 ~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~-tpl~~~------~~~~~~~ll~~~ 155 (199)
++|++++.+|..|+||||+|+..++. +++++|+++|++++..+..|. ||+|++ ..++++.|++.+
T Consensus 91 ~~ga~~~~~d~~g~tpL~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~ 162 (239)
T 1ycs_B 91 QFGVNVNAADSDGWTPLHCAASCNNV--------QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162 (239)
T ss_dssp HHTCCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred HcCCCCCccCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhh
Confidence 99999999999999999999998888 999999999999998887777 998873 356788888875
Q ss_pred ccchh
Q psy8420 156 TKINL 160 (199)
Q Consensus 156 ~~~~~ 160 (199)
.+...
T Consensus 163 a~~~~ 167 (239)
T 1ycs_B 163 EKMGI 167 (239)
T ss_dssp HHTTT
T ss_pred hcccc
Confidence 55433
No 63
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.4e-22 Score=133.48 Aligned_cols=93 Identities=31% Similarity=0.331 Sum_probs=88.9
Q ss_pred chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420 4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR 83 (199)
Q Consensus 4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~ 83 (199)
+|.||||+|+..++ .++++.|++.|++++.+|..|.||||+|+.. ++.+++++|++
T Consensus 1 ~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~---------------~~~~~v~~Ll~ 56 (93)
T 1n0q_A 1 NGRTPLHLAARNGH---------LEVVKLLLEAGADVNAKDKNGRTPLHLAARN---------------GHLEVVKLLLE 56 (93)
T ss_dssp --CCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHHHH
T ss_pred CCCcHHHHHHHcCC---------HHHHHHHHHcCCCCcccCCCCCCHHHHHHHc---------------CCHHHHHHHHH
Confidence 58999999999999 9999999999999999999999999999999 99999999999
Q ss_pred cCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCC
Q psy8420 84 CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH 128 (199)
Q Consensus 84 ~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~ 128 (199)
+|++++.+|..|.||||+|+..++. +++++|+++|++
T Consensus 57 ~ga~~~~~d~~g~t~l~~A~~~~~~--------~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 57 AGADVNAKDKNGRTPLHLAARNGHL--------EVVKLLLEAGAY 93 (93)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCC
T ss_pred cCCCCCccCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCC
Confidence 9999999999999999999999999 999999999985
No 64
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.89 E-value=2.6e-23 Score=172.19 Aligned_cols=139 Identities=23% Similarity=0.283 Sum_probs=116.4
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT 63 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~ 63 (199)
+..|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..|+ ++ +.
T Consensus 11 ~~~g~t~L~~Aa~~g~---------~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~ 81 (437)
T 1n11_A 11 GESGLTPLHVASFMGH---------LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ 81 (437)
T ss_dssp ----CCHHHHHHHHTC---------HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC
T ss_pred CCCCCCHHHHHHHCCC---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Confidence 5689999999999999 999999999999999999999999999999988 33 56
Q ss_pred ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc-
Q psy8420 64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA- 142 (199)
Q Consensus 64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~- 142 (199)
+|++.|+..++.+++++|+++|++++..+..|.||||+|+..++. +++++|++.+++.+..+..|.||||+
T Consensus 82 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~--------~~v~~Ll~~~~~~~~~~~~g~t~L~~A 153 (437)
T 1n11_A 82 TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV--------ETVLALLEKEASQACMTKKGFTPLHVA 153 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCH--------HHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH--------HHHHHHHhCCCCCcCCCCCCCCHHHHH
Confidence 788888888888888888888888888888888888888888888 88888888888888888888888887
Q ss_pred ---ccchHHHHHHhhccc
Q psy8420 143 ---TTTGVADLILRTLTK 157 (199)
Q Consensus 143 ---~~~~~~~~ll~~~~~ 157 (199)
...++++.|++.+.+
T Consensus 154 ~~~g~~~~v~~Ll~~g~~ 171 (437)
T 1n11_A 154 AKYGKVRVAELLLERDAH 171 (437)
T ss_dssp HHTTCHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHhCCCC
Confidence 455677777776443
No 65
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.89 E-value=4e-23 Score=171.09 Aligned_cols=123 Identities=23% Similarity=0.227 Sum_probs=62.2
Q ss_pred cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Ccc
Q psy8420 3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DTF 64 (199)
Q Consensus 3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~~ 64 (199)
+.|.||||+|+..|+ .++++.|++.|++++..+..|.||||+|+..++ ++ +.+
T Consensus 144 ~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 214 (437)
T 1n11_A 144 KKGFTPLHVAAKYGK---------VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT 214 (437)
T ss_dssp TTSCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCC
T ss_pred CCCCCHHHHHHHcCC---------HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCC
Confidence 455566666666665 555555555555555555555555555555554 11 234
Q ss_pred cccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420 65 HTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA 142 (199)
Q Consensus 65 ~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 142 (199)
|++.|+..++.+++++|++.|++++..+..|.||||+|+..++. +++++|++.|++++..+..|.||||+
T Consensus 215 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~--------~~v~~Ll~~~~~~~~~~~~g~t~L~~ 284 (437)
T 1n11_A 215 PLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA--------EMVALLLSKQANGNLGNKSGLTPLHL 284 (437)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHTTTCCTTCCCTTCCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCH--------HHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 44444444444444444444444444444444444444444444 44444444444444444444444444
No 66
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.89 E-value=1.9e-22 Score=161.82 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=130.8
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHH-cCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVF-SLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL 80 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~-~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~ 80 (199)
++.|.||||+|+..|+ .++++.|+. .|++++.++..|.|++++++..+ ...+...++++
T Consensus 165 ~~~g~T~L~~A~~~g~---------~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~-----------~~~~~~~i~~l 224 (337)
T 4g8k_A 165 RKGGATALMDAAEKGH---------VEVLKILLDEMGADVNACDNMGRNALIHALLSS-----------DDSDVEAITHL 224 (337)
T ss_dssp TTCSCCHHHHHHHHTC---------HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHS-----------CTTTHHHHHHH
T ss_pred cCCCCcHHHHHHHCCC---------HHHHHHHHhccCCCcCccCCCCCcHHHHHHHHc-----------CcccHHHHHHH
Confidence 4678999999999999 999999996 59999999999999999987761 11234568899
Q ss_pred HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHc-CCCCCCCCCCCCCcccc----ccchHHHHHHhhc
Q psy8420 81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTEN-GAHMDTVNNKGLTPIQA----TTTGVADLILRTL 155 (199)
Q Consensus 81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~-ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~ 155 (199)
|+++|+++|.+|..|.||||+|+..+.. ++++.|+.. |++++.+|..|.||||+ ...++++.|++.+
T Consensus 225 Ll~~gad~n~~d~~g~t~L~~a~~~~~~--------~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G 296 (337)
T 4g8k_A 225 LLDHGADVNVRGERGKTPLILAVEKKHL--------GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 296 (337)
T ss_dssp HHHTTCCTTCCCGGGCCHHHHHHHTTCH--------HHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHHhhhh--------HHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 9999999999999999999999999999 999999975 89999999999999999 5678899999998
Q ss_pred ccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhcc
Q psy8420 156 TKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDK 196 (199)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 196 (199)
++.........++. . -..++.++|..+|+++|-
T Consensus 297 Ad~n~~~~L~~A~~------~--~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 297 ASTDCGDLVMTARR------N--YDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp CSSTTCCHHHHHHH------T--TCHHHHHHHHHTTCCC--
T ss_pred CCCCCCCHHHHHHH------c--CCHHHHHHHHHCcCCCCC
Confidence 87654322111111 1 135688999999999884
No 67
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.89 E-value=8.9e-23 Score=160.73 Aligned_cols=135 Identities=18% Similarity=0.158 Sum_probs=113.7
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT 63 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~ 63 (199)
|..|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..|+ ++ |.
T Consensus 70 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~ 140 (299)
T 1s70_B 70 NVDGLTALHQACIDDN---------VDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD 140 (299)
T ss_dssp CTTCCBHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCC
Confidence 5789999999999999 999999999999999999999999999999998 33 67
Q ss_pred ccccccccCCcHHHHHHHHhc-CCCCc-----------------------------c-----------------------
Q psy8420 64 FHTNDVCKFPCAATTKLLIRC-GADVN-----------------------------A----------------------- 90 (199)
Q Consensus 64 ~~l~~~~~~~~~~~~~~Ll~~-ga~v~-----------------------------~----------------------- 90 (199)
+|++.|+..++.++++.++.. |.+++ .
T Consensus 141 t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 220 (299)
T 1s70_B 141 TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220 (299)
T ss_dssp CHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred CHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH
Confidence 889999988888888876642 32210 0
Q ss_pred ----CC---CCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccccchHHHHHHh
Q psy8420 91 ----KD---YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILR 153 (199)
Q Consensus 91 ----~d---~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~~~~~~~~ll~ 153 (199)
.+ ..|.||||+|+..++. +++++|+++|++++.+|..|.||++++..+..+.+.+
T Consensus 221 ~g~d~~~~d~~g~tpL~~A~~~~~~--------~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~ 282 (299)
T 1s70_B 221 ARYDVNIKDYDGWTPLHAAAHWGKE--------EACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEE 282 (299)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHH
T ss_pred cCCCCCCcCCCCCcHHHHHHhcCCH--------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 01 2689999999999999 9999999999999999999999999976665544443
No 68
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.89 E-value=6.9e-23 Score=161.35 Aligned_cols=123 Identities=13% Similarity=0.133 Sum_probs=109.1
Q ss_pred HHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC---------------CcccccccccCCcHHHHHHHHhcCCCCcc
Q psy8420 27 EYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV---------------DTFHTNDVCKFPCAATTKLLIRCGADVNA 90 (199)
Q Consensus 27 ~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~---------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~ 90 (199)
...+..++..+ +++.+|..|.||||+|+..|+ ++ |.+|++.|+..++.+++++|+++|++++.
T Consensus 12 ~~~v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~ 90 (285)
T 3kea_A 12 SKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQ 90 (285)
T ss_dssp HHHHHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 45555566554 689999999999999999998 33 67899999999999999999999999999
Q ss_pred CCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCC-CCcccc----ccchHHHHHHhhcccc
Q psy8420 91 KDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG-LTPIQA----TTTGVADLILRTLTKI 158 (199)
Q Consensus 91 ~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g-~tpl~~----~~~~~~~~ll~~~~~~ 158 (199)
+|..|.||||+|+..++. +++++|+++|++++..+..| .||||+ ...++++.|++.+...
T Consensus 91 ~d~~g~t~L~~A~~~g~~--------~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~ 155 (285)
T 3kea_A 91 FDDKGNTALYYAVDSGNM--------QTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST 155 (285)
T ss_dssp CCTTSCCHHHHHHHTTCH--------HHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred cCCCCCcHHHHHHHcCCH--------HHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Confidence 999999999999999999 99999999999999999999 899998 5667889999885543
No 69
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.89 E-value=4.9e-23 Score=160.68 Aligned_cols=134 Identities=23% Similarity=0.227 Sum_probs=115.3
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccC--------------CCchHHHHHHhcCCCCCccccc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASR--------------QNQSLLHLCVNYETPVDTFHTN 67 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~--------------~g~t~L~~a~~~~~~~~~~~l~ 67 (199)
|..|.||||+|+..++ .++++.|++.|++++.++. .|.||||+|+..
T Consensus 98 d~~g~tpL~~A~~~g~---------~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~---------- 158 (273)
T 2pnn_A 98 YYKGQTALHIAIERRN---------MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT---------- 158 (273)
T ss_dssp TTTTCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHT----------
T ss_pred cCCCCCHHHHHHHcCC---------HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHc----------
Confidence 3589999999999999 9999999999999999987 799999999999
Q ss_pred ccccCCcHHHHHHHHh---cCCCCccCCCCCCcHHHHHHhccCcc-cchhhHHHHHHHHHHcCCCCC-------CCCCCC
Q psy8420 68 DVCKFPCAATTKLLIR---CGADVNAKDYQGNTPLHIIATYERAI-SDFQTLHTIILDLTENGAHMD-------TVNNKG 136 (199)
Q Consensus 68 ~~~~~~~~~~~~~Ll~---~ga~v~~~d~~g~tpl~~a~~~~~~~-~~~~~~~~~~~~Ll~~ga~~~-------~~~~~g 136 (199)
++.+++++|++ .|++++.+|..|+||||+|+..++.. .+...+.+++++|+++|++++ .+|..|
T Consensus 159 -----g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g 233 (273)
T 2pnn_A 159 -----NQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKG 233 (273)
T ss_dssp -----TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTS
T ss_pred -----CCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCC
Confidence 99999999999 99999999999999999999987621 011111289999999999986 589999
Q ss_pred CCcccc----ccchHHHHHHhhcccch
Q psy8420 137 LTPIQA----TTTGVADLILRTLTKIN 159 (199)
Q Consensus 137 ~tpl~~----~~~~~~~~ll~~~~~~~ 159 (199)
.||||+ ...++++.|++.++..+
T Consensus 234 ~TpL~~A~~~g~~~iv~~Ll~~ga~dp 260 (273)
T 2pnn_A 234 LTPLALAASSGKIGVLAYILQREIHEP 260 (273)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHhChHHHHHHHHHCCCCCc
Confidence 999999 56778999999877433
No 70
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=7.3e-23 Score=151.04 Aligned_cols=108 Identities=22% Similarity=0.354 Sum_probs=104.4
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL 81 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 81 (199)
+..|.||||+|+..|+ .++++.|++ |++++.+|..|.||||+|+.. ++.+++++|
T Consensus 41 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~---------------~~~~~v~~L 95 (183)
T 3deo_A 41 VSEYETPWWTAARKAD---------EQALSQLLE-DRDVDAVDENGRTALLFVAGL---------------GSDKCVRLL 95 (183)
T ss_dssp HHHHHHHHHHHHHTTC---------HHHHHHHTT-TSCTTCCCTTSCCHHHHHHHH---------------TCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHh-cCCCCCcCCCCCCHHHHHHHc---------------CCHHHHHHH
Confidence 4579999999999999 999999999 999999999999999999999 999999999
Q ss_pred HhcCCCCccCC-CCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420 82 IRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA 142 (199)
Q Consensus 82 l~~ga~v~~~d-~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 142 (199)
+++|++++.++ ..|+||||+|+..++. +++++|+++|++++.+|..|.||||+
T Consensus 96 l~~ga~~~~~~~~~g~tpL~~A~~~~~~--------~~v~~Ll~~ga~~~~~d~~g~tpl~~ 149 (183)
T 3deo_A 96 AEAGADLDHRDMRGGLTALHMAAGYVRP--------EVVEALVELGADIEVEDERGLTALEL 149 (183)
T ss_dssp HHTTCCTTCCCSSSSCCHHHHHHHTTCH--------HHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred HHcCCCCCcCCCCCCCCHHHHHHhcCcH--------HHHHHHHHcCCCCcCCCCCCCCHHHH
Confidence 99999999998 8999999999999999 99999999999999999999999998
No 71
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.88 E-value=6.5e-23 Score=155.99 Aligned_cols=141 Identities=18% Similarity=0.232 Sum_probs=126.3
Q ss_pred CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC------------------
Q psy8420 1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------ 61 (199)
Q Consensus 1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------ 61 (199)
+|..|.|+||.|+..|. .++++.|++.|++++.++..|.||||+|+..++ ++
T Consensus 5 ~d~~~~~~l~~A~~~g~---------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 75 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGI---------YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75 (240)
T ss_dssp CSCGGGCCHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTT
T ss_pred cccccchHHHHHHHcCC---------hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCc
Confidence 47889999999999999 999999999999999999999999999999988 32
Q ss_pred CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccc
Q psy8420 62 DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ 141 (199)
Q Consensus 62 ~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~ 141 (199)
+.+|++.|+..++.+++++|++.|++++..+..|.||||+|+..++. +++++|+++|++++..+..|.|||+
T Consensus 76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~--------~~~~~Ll~~~~~~~~~~~~g~t~l~ 147 (240)
T 3eu9_A 76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT--------SIVAYLIAKGQDVDMMDQNGMTPLM 147 (240)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHH--------HHHHHHHhcCCCccccCCCCCcHHH
Confidence 56788899999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred c-----ccchHHHHHHhhcccc
Q psy8420 142 A-----TTTGVADLILRTLTKI 158 (199)
Q Consensus 142 ~-----~~~~~~~~ll~~~~~~ 158 (199)
+ .....++.|++.+.+.
T Consensus 148 ~a~~~~~~~~~~~~L~~~~~~~ 169 (240)
T 3eu9_A 148 WAAYRTHSVDPTRLLLTFNVSV 169 (240)
T ss_dssp HHHHHCCSSTTHHHHHHTTCCT
T ss_pred HHHHhCChHHHHHHHHhcCCCc
Confidence 8 2256777787775443
No 72
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.88 E-value=1e-22 Score=163.02 Aligned_cols=143 Identities=18% Similarity=0.148 Sum_probs=126.5
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-------------------
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV------------------- 61 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~------------------- 61 (199)
|..|.||||+|+..|+ .++++.|++.|++++.++..|.||||+|+..++ ++
T Consensus 88 ~~~g~t~L~~A~~~g~---------~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 158 (351)
T 3utm_A 88 DKGGLVPLHNACSYGH---------YEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGK 158 (351)
T ss_dssp CTTCCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCcHHHHHHHCCC---------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCC
Confidence 5789999999999999 999999999999999999999999999999887 22
Q ss_pred ----------------------------------------------------CcccccccccC---CcHHHHHHHHhcCC
Q psy8420 62 ----------------------------------------------------DTFHTNDVCKF---PCAATTKLLIRCGA 86 (199)
Q Consensus 62 ----------------------------------------------------~~~~l~~~~~~---~~~~~~~~Ll~~ga 86 (199)
+.+|++.|+.. +..+++++|++.|+
T Consensus 159 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~ 238 (351)
T 3utm_A 159 SAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGA 238 (351)
T ss_dssp CHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTC
T ss_pred cchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCC
Confidence 12566666666 56889999999999
Q ss_pred CCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchhH
Q psy8420 87 DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINLK 161 (199)
Q Consensus 87 ~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~~ 161 (199)
+++.+|..|.||||+|+..++. +++++|+++|++++.+|..|.||||+ ...++++.|++.+++....
T Consensus 239 ~~~~~~~~g~t~L~~A~~~g~~--------~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~ 309 (351)
T 3utm_A 239 NVNEKNKDFMTPLHVAAERAHN--------DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309 (351)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred CcCCcCCCCCCHHHHHHHcCCH--------HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc
Confidence 9999999999999999999999 99999999999999999999999998 5677899999987775553
No 73
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.88 E-value=7.5e-23 Score=159.25 Aligned_cols=139 Identities=17% Similarity=0.117 Sum_probs=96.4
Q ss_pred cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccc-cCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420 3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVA-SRQNQSLLHLCVNYET-PV-----------------DT 63 (199)
Q Consensus 3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~-~~~g~t~L~~a~~~~~-~~-----------------~~ 63 (199)
..|.||||.|+..|. .++++.|++.|++++.+ +..|.||||+|+..|+ ++ |.
T Consensus 3 ~~g~~~L~~A~~~g~---------~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~ 73 (285)
T 1wdy_A 3 VEDNHLLIKAVQNED---------VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA 73 (285)
T ss_dssp HHHHHHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred cccchHHHHHHHcCC---------HHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence 467788888888888 78888888888888776 6677888888888777 22 56
Q ss_pred ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCC------CCCCCCCCC
Q psy8420 64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH------MDTVNNKGL 137 (199)
Q Consensus 64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~------~~~~~~~g~ 137 (199)
+|++.|+..++.+++++|+++|++++..+..|.||||+|+..++. +.++.+++.-...... ....+..|.
T Consensus 74 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 74 TPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV----KALKFLYKRGANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCH----HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCH----HHHHHHHHhCCCcccccccHHHHHhhccCCC
Confidence 777888888888888888888888888888888888888877655 2222333221111111 112356778
Q ss_pred Ccccc----ccchHHHHHHhh
Q psy8420 138 TPIQA----TTTGVADLILRT 154 (199)
Q Consensus 138 tpl~~----~~~~~~~~ll~~ 154 (199)
||||+ ...++++.|++.
T Consensus 150 t~L~~A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 150 TALMDAAEKGHVEVLKILLDE 170 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT
T ss_pred cHHHHHHHcCCHHHHHHHHHh
Confidence 88887 456677777765
No 74
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.88 E-value=4.9e-23 Score=140.61 Aligned_cols=108 Identities=25% Similarity=0.254 Sum_probs=101.6
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL 81 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 81 (199)
|++|.||||+|+..++ .++++.|++.|++++.++..|.||||+|+.. ++.+++++|
T Consensus 6 d~~g~t~L~~A~~~~~---------~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~---------------~~~~~~~~L 61 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGH---------AEEVKKLLSKGADVNARSKDGNTPLHLAAKN---------------GHAEIVKLL 61 (115)
T ss_dssp SCSSCCHHHHHHHHTC---------HHHHHHHTTTTCCSSCCCSSSCCTTHHHHTT---------------TCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc---------------CcHHHHHHH
Confidence 7899999999999999 9999999999999999999999999999999 999999999
Q ss_pred HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccc
Q psy8420 82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ 141 (199)
Q Consensus 82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~ 141 (199)
+++|++++.+|..|.||||+|+..++. +++++|+++|++++..+..|.+|-.
T Consensus 62 l~~g~~~~~~d~~g~tpl~~A~~~~~~--------~~~~~Ll~~ga~~n~~~~~~~~~~~ 113 (115)
T 2l6b_A 62 LAKGADVNARSKDGNTPEHLAKKNGHH--------EIVKLLDAKGADVNARSWGSSHHHH 113 (115)
T ss_dssp TTTTCCTTCCCTTCCCTTHHHHTTTCH--------HHHHHHHTTSSSHHHHSCCCC----
T ss_pred HHcCCCCcccCCCCCCHHHHHHHCCCH--------HHHHHHHHcCCCCCcCCcccccccc
Confidence 999999999999999999999999999 9999999999999999999999853
No 75
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.87 E-value=6.5e-22 Score=147.22 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=80.4
Q ss_pred CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCC-CcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHH
Q psy8420 1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLN-KLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTK 79 (199)
Q Consensus 1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~-~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~ 79 (199)
|+..+.||||.|+..|. .+.++.++..+. +++.++..|.||||+|+.. ++.++++
T Consensus 1 ~~~~~~~~L~~A~~~g~---------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~ 56 (201)
T 3hra_A 1 MKTYEVGALLEAANQRD---------TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN---------------NDIEIAK 56 (201)
T ss_dssp --CCCTTHHHHHHHTTC---------HHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHH---------------TCHHHHH
T ss_pred CCcccccHHHHHHHhcc---------HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc---------------CCHHHHH
Confidence 46789999999999999 999999999865 9999999999999999999 4555555
Q ss_pred HHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHH-HcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420 80 LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLT-ENGAHMDTVNNKGLTPIQA----TTTGVADLILRT 154 (199)
Q Consensus 80 ~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll-~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~ 154 (199)
+|+++|++++..+..|.||||+|+..++. +++++|+ ..+++++..+..|.||||+ ...++++.|++.
T Consensus 57 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~--------~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 128 (201)
T 3hra_A 57 ALIDRGADINLQNSISDSPYLYAGAQGRT--------EILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCCCCCCHHHHHHHcCCH--------HHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 55555555555555555555555555555 5555555 3344555555555555554 233444444444
No 76
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.87 E-value=2.5e-22 Score=162.74 Aligned_cols=125 Identities=15% Similarity=0.137 Sum_probs=117.7
Q ss_pred ccchhhHHHHHHHHh--hccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHH
Q psy8420 2 EDNLVTSLYLLVILT--KVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTK 79 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~--~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~ 79 (199)
|..|.||||+|+..| + .++++.|++.|++++.++..|.||||+|+.. ++.++++
T Consensus 135 ~~~g~t~L~~A~~~g~~~---------~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~---------------g~~~~v~ 190 (364)
T 3ljn_A 135 HCKGQTALHWCVGLGPEY---------LEMIKILVQLGASPTAKDKADETPLMRAMEF---------------RNREALD 190 (364)
T ss_dssp EESCCCHHHHHHHSCGGG---------HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT---------------TCHHHHH
T ss_pred CCCCCCHHHHHHHcCCch---------HHHHHHHHHcCCCCcccCCCCCCHHHHHHHc---------------CCHHHHH
Confidence 357899999999999 8 8999999999999999999999999999999 9999999
Q ss_pred HHHhcCCC-----CccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHH
Q psy8420 80 LLIRCGAD-----VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADL 150 (199)
Q Consensus 80 ~Ll~~ga~-----v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ 150 (199)
+|+++|++ ++..|..|+||||+|+..++. +++++|+++|++++.+|..|.||||+ ...++++.
T Consensus 191 ~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~--------~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~ 262 (364)
T 3ljn_A 191 LMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE--------DVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKE 262 (364)
T ss_dssp HHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCH--------HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHH
T ss_pred HHHhcccccccccccccCCCCCcHHHHHHHcCCH--------HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHH
Confidence 99999999 999999999999999999999 99999999999999999999999999 56778999
Q ss_pred HHhhcccc
Q psy8420 151 ILRTLTKI 158 (199)
Q Consensus 151 ll~~~~~~ 158 (199)
|++.+...
T Consensus 263 Ll~~~~~~ 270 (364)
T 3ljn_A 263 LLQKTDVF 270 (364)
T ss_dssp HHHHSCHH
T ss_pred HHHcCCch
Confidence 99986554
No 77
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.87 E-value=1.3e-21 Score=140.03 Aligned_cols=105 Identities=20% Similarity=0.255 Sum_probs=91.8
Q ss_pred CchHHHHHHhcCC-CC----------------CcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcc
Q psy8420 47 NQSLLHLCVNYET-PV----------------DTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAI 109 (199)
Q Consensus 47 g~t~L~~a~~~~~-~~----------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~ 109 (199)
..++|+.|+..|+ ++ |.+|++.|+..++.+++++|++.|++++..+..|.||||+|+..++.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~- 80 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA- 80 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH-
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH-
Confidence 3578888888887 22 67889999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccch
Q psy8420 110 SDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKIN 159 (199)
Q Consensus 110 ~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~ 159 (199)
+++++|+++|++++.+|..|.||||+ ...++++.|++.+.+..
T Consensus 81 -------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 127 (153)
T 1awc_B 81 -------NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127 (153)
T ss_dssp -------HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred -------HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence 99999999999999999999999998 45678888888866543
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.87 E-value=1.4e-22 Score=155.65 Aligned_cols=160 Identities=11% Similarity=-0.000 Sum_probs=101.3
Q ss_pred cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420 3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI 82 (199)
Q Consensus 3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 82 (199)
..|.||||.|++.+. .+.++.|+++|++++.. ..|.||||.|+.. ++.+++++|+
T Consensus 3 ~~g~t~L~~a~~~~~---------~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~---------------g~~~~v~~Ll 57 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNL---------RKTGSERIAHGMRVKFN-PLPLALLLDSSLE---------------GEFDLVQRII 57 (239)
T ss_dssp --------------------------------------------CHHHHHHHHHH---------------TCHHHHHHHT
T ss_pred ccccccCchhhhhhh---------HHHHHHHhccCCCcccC-chhhHHHHHHHHc---------------CCHHHHHHHH
Confidence 579999999999999 89999999999999864 6789999999999 9999999999
Q ss_pred hcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccc
Q psy8420 83 RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKI 158 (199)
Q Consensus 83 ~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~ 158 (199)
+.|++++.+|..|.||||+|+..++. +++++|+++|++++.+|..|.||||+ ...++++.|++.+.+.
T Consensus 58 ~~g~~~~~~d~~g~t~L~~A~~~g~~--------~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 129 (239)
T 1ycs_B 58 YEVDDPSLPNDEGITALHNAVCAGHT--------EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129 (239)
T ss_dssp STTSSCCCCCTTSCCHHHHHHHHTCH--------HHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HcCCCCCCcCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 99999999999999999999999999 99999999999999999999999999 5677899999987765
Q ss_pred hhHHHHHH-HHhhccccCCCCCchhHHHHHHHhhhhhcc
Q psy8420 159 NLKCLAAK-VITQNNITYKGLVPHDLESFIELHGTALDK 196 (199)
Q Consensus 159 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 196 (199)
........ ........... -...+.++|..+|++++.
T Consensus 130 ~~~~~~~~~t~l~~a~~~~~-g~~~~~~~Ll~~~a~~~~ 167 (239)
T 1ycs_B 130 FAMTYSDMQTAADKCEEMEE-GYTQCSQFLYGVQEKMGI 167 (239)
T ss_dssp TCCCSSSCCCHHHHCCSSST-TCCCHHHHHHHHHHHTTT
T ss_pred ceecCCCCcchHHHHHHhhh-ccHHHHHHHHHhhhcccc
Confidence 54322111 11111111221 234567888888888764
No 79
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=2.4e-22 Score=154.95 Aligned_cols=108 Identities=22% Similarity=0.354 Sum_probs=104.1
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL 81 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 81 (199)
+..|.||||+|+..|+ .++++.|+. |++++.++..|.||||+|+.. ++.+++++|
T Consensus 42 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~---------------g~~~~v~~L 96 (244)
T 3ui2_A 42 VSEYETPWWTAARKAD---------EQALSQLLE-DRDVDAVDENGRTALLFVAGL---------------GSDKCVRLL 96 (244)
T ss_dssp HHHHHHHHHHHHTTTC---------HHHHHHTTT-TCCTTCBCTTSCBHHHHHHHH---------------TCHHHHHHH
T ss_pred ccCCCCHHHHHHHcCC---------HHHHHHHHc-CCCCCCcCCCCCCHHHHHHHC---------------CCHHHHHHH
Confidence 3578999999999999 999999999 999999999999999999999 999999999
Q ss_pred HhcCCCCccCC-CCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420 82 IRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA 142 (199)
Q Consensus 82 l~~ga~v~~~d-~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 142 (199)
+++|++++.++ ..|.||||+|+..++. +++++|+++|++++.+|..|.||||+
T Consensus 97 l~~ga~~~~~~~~~g~t~L~~A~~~g~~--------~~v~~Ll~~ga~~~~~d~~g~t~l~~ 150 (244)
T 3ui2_A 97 AEAGADLDHRDMRGGLTALHMAAGYVRP--------EVVEALVELGADIEVEDERGLTALEL 150 (244)
T ss_dssp HHTTCCTTCCCSSSCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred HHcCCCCCcCCCCCCCCHHHHHHHcCCH--------HHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 99999999998 8899999999999999 99999999999999999999999998
No 80
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.87 E-value=1.3e-22 Score=158.19 Aligned_cols=125 Identities=23% Similarity=0.248 Sum_probs=110.1
Q ss_pred ccchhhHHHHHHHH---hhccccCChhHHHHHHHHHHcCCC-------ccc----ccCCCchHHHHHHhcCCCCCccccc
Q psy8420 2 EDNLVTSLYLLVIL---TKVIKNISEEEEYRIYKLVFSLNK-------LSV----ASRQNQSLLHLCVNYETPVDTFHTN 67 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~---~~~~~~~~~~~~~~~~~ll~~g~~-------i~~----~~~~g~t~L~~a~~~~~~~~~~~l~ 67 (199)
|..|.||||+|+.. |+ .++++.|++.|++ ++. ++..|.||||+|+..
T Consensus 51 ~~~g~tpL~~A~~~~~~g~---------~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~---------- 111 (273)
T 2pnn_A 51 PETGKTCLLKAMLNLHNGQ---------NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER---------- 111 (273)
T ss_dssp TTTCCCHHHHHHHSCBTTB---------CHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHT----------
T ss_pred CcCCCCHHHHHHHHHhcCC---------hHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHc----------
Confidence 56899999999987 77 8999999999865 232 567899999999999
Q ss_pred ccccCCcHHHHHHHHhcCCCCccCCC--------------CCCcHHHHHHhccCcccchhhHHHHHHHHHH---cCCCCC
Q psy8420 68 DVCKFPCAATTKLLIRCGADVNAKDY--------------QGNTPLHIIATYERAISDFQTLHTIILDLTE---NGAHMD 130 (199)
Q Consensus 68 ~~~~~~~~~~~~~Ll~~ga~v~~~d~--------------~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~---~ga~~~ 130 (199)
++.+++++|+++|++++..+. .|.||||+|+..++. +++++|++ +|++++
T Consensus 112 -----g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~--------~~v~~Ll~~~~~gad~~ 178 (273)
T 2pnn_A 112 -----RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL--------AIVKFLLQNSWQPADIS 178 (273)
T ss_dssp -----TCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH--------HHHHHHHHCSSCCCCTT
T ss_pred -----CCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCH--------HHHHHHHhcccCCCCce
Confidence 999999999999999999997 799999999999999 99999999 999999
Q ss_pred CCCCCCCCcccccc-------------chHHHHHHhhcccc
Q psy8420 131 TVNNKGLTPIQATT-------------TGVADLILRTLTKI 158 (199)
Q Consensus 131 ~~~~~g~tpl~~~~-------------~~~~~~ll~~~~~~ 158 (199)
.+|..|.||||++. .++++.|++.+.+.
T Consensus 179 ~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 219 (273)
T 2pnn_A 179 ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL 219 (273)
T ss_dssp CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhc
Confidence 99999999999922 46677777775543
No 81
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.86 E-value=8.7e-22 Score=157.96 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=118.5
Q ss_pred chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccC-CCchHHHHHHhcCC-CC--------------------
Q psy8420 4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASR-QNQSLLHLCVNYET-PV-------------------- 61 (199)
Q Consensus 4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~-~g~t~L~~a~~~~~-~~-------------------- 61 (199)
.|.|+||.|+..|+ +++|+.||++|+++|.++. .|.||||+|+..|+ ++
T Consensus 24 ~~~t~L~~Av~~g~---------~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~ 94 (337)
T 4g8k_A 24 EDNHLLIKAVQNED---------VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT 94 (337)
T ss_dssp HHHHHHHHHHHTTC---------HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred CCChHHHHHHHcCC---------HHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCc
Confidence 57899999999999 9999999999999998876 59999999999988 33
Q ss_pred ------------------------------CcccccccccCCcHHHHHHHHhcCCCCccC----------CCCCCcHHHH
Q psy8420 62 ------------------------------DTFHTNDVCKFPCAATTKLLIRCGADVNAK----------DYQGNTPLHI 101 (199)
Q Consensus 62 ------------------------------~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~----------d~~g~tpl~~ 101 (199)
|.+|++.|+..++.+++++++++|++++.. +..|.||||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~ 174 (337)
T 4g8k_A 95 PFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 174 (337)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHH
T ss_pred hhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHH
Confidence 467888899999999999999999998764 4468999999
Q ss_pred HHhccCcccchhhHHHHHHHHHH-cCCCCCCCCCCCCCcccc----cc----chHHHHHHhhcccc
Q psy8420 102 IATYERAISDFQTLHTIILDLTE-NGAHMDTVNNKGLTPIQA----TT----TGVADLILRTLTKI 158 (199)
Q Consensus 102 a~~~~~~~~~~~~~~~~~~~Ll~-~ga~~~~~~~~g~tpl~~----~~----~~~~~~ll~~~~~~ 158 (199)
|+..|+. +++++|++ .|++++.+|..|.||++. +. ..+++.|++.+.+.
T Consensus 175 A~~~g~~--------~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~ 232 (337)
T 4g8k_A 175 AAEKGHV--------EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 232 (337)
T ss_dssp HHHHTCH--------HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT
T ss_pred HHHCCCH--------HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC
Confidence 9999999 99999995 699999999999999986 22 24667788776543
No 82
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.86 E-value=2.3e-21 Score=138.88 Aligned_cols=117 Identities=21% Similarity=0.284 Sum_probs=108.5
Q ss_pred chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHh
Q psy8420 4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIR 83 (199)
Q Consensus 4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~ 83 (199)
.|.||||+ +..++ .++++.|++.|++++.++..|.||||+|+.. ++.+++++|++
T Consensus 35 ~g~t~L~~-~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~Ll~ 89 (156)
T 1bd8_A 35 FGKTALQV-MMFGS---------TAIALELLKQGASPNVQDTSGTSPVHDAART---------------GFLDTLKVLVE 89 (156)
T ss_dssp TSCCHHHH-SCTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHHHH
T ss_pred CCCcHHHH-HHcCC---------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc---------------CcHHHHHHHHH
Confidence 05699999 88998 9999999999999999999999999999999 99999999999
Q ss_pred cCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420 84 CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT 154 (199)
Q Consensus 84 ~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~ 154 (199)
+|++++.+|..|.||||+|+..++. +++++|++. ++++.+|..|.|||++ ...++++.|++.
T Consensus 90 ~g~~~~~~~~~g~t~L~~A~~~~~~--------~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 90 HGADVNVPDGTGALPIHLAVQEGHT--------AVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHHTCH--------HHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cCCCCCCcCCCCCcHHHHHHHhChH--------HHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 9999999999999999999999999 999999999 9999999999999998 455677777654
No 83
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.86 E-value=6.3e-22 Score=161.39 Aligned_cols=138 Identities=15% Similarity=0.181 Sum_probs=123.8
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcC---CCcccccCCCchHHHHHHhcC---C-CC-------------
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSL---NKLSVASRQNQSLLHLCVNYE---T-PV------------- 61 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g---~~i~~~~~~g~t~L~~a~~~~---~-~~------------- 61 (199)
|..|.||||+|+..++ .++++.|+..| ++++.++..|.||||+|+..+ + ++
T Consensus 196 ~~~g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~ 266 (373)
T 2fo1_E 196 NKSERSALHQAAANRD---------FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY 266 (373)
T ss_dssp CTTCCCHHHHHHHTTC---------HHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC
T ss_pred CCCCCCHHHHHHHCCC---------HHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccc
Confidence 5788999999999999 89999999987 799999999999999999876 2 11
Q ss_pred ------------CcccccccccCCcHHHHHHHHhcC-CCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCC
Q psy8420 62 ------------DTFHTNDVCKFPCAATTKLLIRCG-ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH 128 (199)
Q Consensus 62 ------------~~~~l~~~~~~~~~~~~~~Ll~~g-a~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~ 128 (199)
|.+|++.|+..++.+++++|++.| ++++.+|..|.||||+|+..++. +++++|+++|++
T Consensus 267 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~--------~iv~~Ll~~gad 338 (373)
T 2fo1_E 267 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI--------EVVMYLIQQGAS 338 (373)
T ss_dssp CSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCH--------HHHHHHHHTTCC
T ss_pred ccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCC
Confidence 467899999999999999999876 99999999999999999999999 999999999999
Q ss_pred CCCCCCCCCCcccc----ccchHHHHHHhhcc
Q psy8420 129 MDTVNNKGLTPIQA----TTTGVADLILRTLT 156 (199)
Q Consensus 129 ~~~~~~~g~tpl~~----~~~~~~~~ll~~~~ 156 (199)
++.+|..|.|||++ ...++++.|++.+.
T Consensus 339 ~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a 370 (373)
T 2fo1_E 339 VEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370 (373)
T ss_dssp SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 99999999999999 55677888887643
No 84
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=148.79 Aligned_cols=174 Identities=15% Similarity=0.068 Sum_probs=133.9
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccC-CCchHHHHHHhcCC-CC-----------------C
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASR-QNQSLLHLCVNYET-PV-----------------D 62 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~-~g~t~L~~a~~~~~-~~-----------------~ 62 (199)
+..|.||||+|+..++ .++++.|++.|.+++.... .|.||||+|+..++ ++ +
T Consensus 39 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 109 (240)
T 3eu9_A 39 DKENVTLLHWAAINNR---------IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEG 109 (240)
T ss_dssp CTTSCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred CCCCCCHHHHHHHhCC---------HHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence 5678899999999998 8999999999988886554 58899999998888 22 5
Q ss_pred cccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccC-cccchhhHHHHHHHHHHcCCCCCCCCC-CCCCcc
Q psy8420 63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYER-AISDFQTLHTIILDLTENGAHMDTVNN-KGLTPI 140 (199)
Q Consensus 63 ~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~-~~~~~~~~~~~~~~Ll~~ga~~~~~~~-~g~tpl 140 (199)
.+|++.|+..++.+++++|+++|++++..+..|.||+|+|+..+. . .++++|++.|++++..+. .|.|||
T Consensus 110 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~--------~~~~~L~~~~~~~~~~~~~~g~t~L 181 (240)
T 3eu9_A 110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV--------DPTRLLLTFNVSVNLGDKYHKNTAL 181 (240)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS--------TTHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred CCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChH--------HHHHHHHhcCCCcchhhccCCCcHH
Confidence 678888999999999999999999999999999999999997665 6 889999999999999987 999999
Q ss_pred cc----ccchHHHHHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhc
Q psy8420 141 QA----TTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALD 195 (199)
Q Consensus 141 ~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (199)
|+ ...++++.|++.+.+.......+.......+.. -..++.+++..++....
T Consensus 182 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~---~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 182 HWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR---KNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHT---TCHHHHHHHHHHC----
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc---CcHHHHHHHHHhhhccC
Confidence 98 567789999998766554322111111111111 14456677777776543
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.85 E-value=6e-22 Score=142.40 Aligned_cols=107 Identities=12% Similarity=0.125 Sum_probs=88.4
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCch-HHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQS-LLHLCVNYETPVDTFHTNDVCKFPCAATTKL 80 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t-~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~ 80 (199)
|..|.||||+|+ .++ .++++.|++.|++++.++..|.| |||+|+.. ++.+++++
T Consensus 42 ~~~g~t~L~~A~-~~~---------~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~---------------~~~~~v~~ 96 (156)
T 1bi7_B 42 NSYGRRPIQVMM-MGS---------ARVAELLLLHGAEPNCADPATLTRPVHDAARE---------------GFLDTLVV 96 (156)
T ss_dssp CSSSCCTTTSSC-TTC---------HHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH---------------TCHHHHHH
T ss_pred CCCCCCHHHHHH-cCC---------HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHC---------------CCHHHHHH
Confidence 578999999985 777 89999999999999999999999 99999999 99999999
Q ss_pred HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccc
Q psy8420 81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ 141 (199)
Q Consensus 81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~ 141 (199)
|+++|++++.+|..|.||||+|+..++. +++++|+++|++++.++..|.||.+
T Consensus 97 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--------~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 97 LHRAGARLDVRDAWGRLPVDLAEELGHR--------DVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp HHHHTCCSSCCCTTCCCHHHHHHHHTCH--------HHHHHHSSCC---------------
T ss_pred HHHcCCCCcccCCCCCCHHHHHHHhCHH--------HHHHHHHHcCCCCCccCcCcCcccc
Confidence 9999999999999999999999999999 9999999999999999999999976
No 86
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=8.1e-21 Score=154.77 Aligned_cols=120 Identities=15% Similarity=0.186 Sum_probs=112.0
Q ss_pred chhhHHHHHHHH-hhccccCChhHHHHHHHHHHcCCCccccc--CCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420 4 NLVTSLYLLVIL-TKVIKNISEEEEYRIYKLVFSLNKLSVAS--RQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL 80 (199)
Q Consensus 4 ~g~t~Lh~a~~~-~~~~~~~~~~~~~~~~~ll~~g~~i~~~~--~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~ 80 (199)
.+.|+||.|+.. +. .++++.|+..|++++..+ ..|.||||+|+.. ++.+++++
T Consensus 198 ~~~t~L~~Aa~~~g~---------~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~---------------g~~~iv~~ 253 (368)
T 3jue_A 198 HPGALLFRASGHPPS---------LPTMADALAHGADVNWVNGGQDNATPLIQATAA---------------NSLLACEF 253 (368)
T ss_dssp CHHHHHHHHTSSSCC---------HHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHT---------------TCHHHHHH
T ss_pred CCCcHHHHHHHccCC---------HHHHHHHHHcCCCCCccccccCCCCHHHHHHHC---------------CCHHHHHH
Confidence 356899999999 88 999999999999999988 8999999999999 99999999
Q ss_pred HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhc
Q psy8420 81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTL 155 (199)
Q Consensus 81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~ 155 (199)
|+++|+++|..|..|+||||+|+..++. +++++|+++|++++..|..|.||||+ ...++++.|+..+
T Consensus 254 LL~~Gadvn~~d~~G~TpLh~A~~~g~~--------~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 254 LLQNGANVNQADSAGRGPLHHATILGHT--------GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCCCCCHHHHHHHcCcH--------HHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999999999999 99999999999999999999999998 5567788887764
No 87
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=1.6e-20 Score=158.64 Aligned_cols=128 Identities=19% Similarity=0.232 Sum_probs=112.9
Q ss_pred hhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccc------cCCCchHHHHHHhcCCCCCcccccccccCCcHHHHH
Q psy8420 6 VTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVA------SRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTK 79 (199)
Q Consensus 6 ~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~------~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~ 79 (199)
.+.||.|+..|. .+.++.|+..|+++|.+ +..|.||||+|+.. +..++.++++
T Consensus 133 ~~~L~~A~~~g~---------~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~------------a~~g~~~~v~ 191 (497)
T 3lvq_E 133 PQRLWTAICNRD---------LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKV------------ANQASLPLVD 191 (497)
T ss_dssp HHHHHHHHHHTC---------HHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHT------------CCTTTHHHHH
T ss_pred HHHHHHHHhccC---------HHHHHHHHhhcccccCCCCCcccccccchHHHHHHHh------------cccccHHHHH
Confidence 467999999999 99999999999999987 88999999999772 1228999999
Q ss_pred HHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhc
Q psy8420 80 LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTL 155 (199)
Q Consensus 80 ~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~ 155 (199)
+|+++|+++|.+|..|+||||+|+..|+. +++++|+++|++++.+|..|.||||+ ...++++.|++.+
T Consensus 192 ~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~--------~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g 263 (497)
T 3lvq_E 192 FIIQNGGHLDAKAADGNTALHYAALYNQP--------DCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ 263 (497)
T ss_dssp HHHHHSCCTTCCCSSSCCHHHHHTTTTCH--------HHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHcCCCCCccCCCCCcHHHHHHHcCCH--------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence 99999999999999999999999999999 99999999999999999999999999 5678899999998
Q ss_pred ccchhHH
Q psy8420 156 TKINLKC 162 (199)
Q Consensus 156 ~~~~~~~ 162 (199)
++.....
T Consensus 264 a~~~~~~ 270 (497)
T 3lvq_E 264 AGTFAFP 270 (497)
T ss_dssp C------
T ss_pred CCCCCCc
Confidence 7766543
No 88
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.83 E-value=6.6e-21 Score=141.36 Aligned_cols=130 Identities=12% Similarity=0.065 Sum_probs=106.6
Q ss_pred chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccccc-CCCchHHHHHHhcCCCCCcccccccccCCc----HHHH
Q psy8420 4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVAS-RQNQSLLHLCVNYETPVDTFHTNDVCKFPC----AATT 78 (199)
Q Consensus 4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~-~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~----~~~~ 78 (199)
.++++|+.|++.|. .+.++.++..+. +.++ ..|.||||+|+.. ++ .+++
T Consensus 5 ~~~~~l~~Aa~~g~---------~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~---------------~~~~~~~~iv 58 (186)
T 3t8k_A 5 SEYRTVSAAAMLGT---------YEDFLELFEKGY--EDKESVLKSNILYDVLRN---------------NNDEARYKIS 58 (186)
T ss_dssp HHCSSHHHHHHHSC---------HHHHHHHHHHSS--SCHHHHHTTTHHHHHTTC---------------SCHHHHHHHH
T ss_pred ccccHHHHHHHcCC---------HHHHHHHHhcCc--ccccccCCCCHHHHHHHc---------------CCcchHHHHH
Confidence 46799999999999 888998888764 4455 6899999999998 65 4599
Q ss_pred HHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCC-Cccccccc---------hHH
Q psy8420 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGL-TPIQATTT---------GVA 148 (199)
Q Consensus 79 ~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~-tpl~~~~~---------~~~ 148 (199)
++|+++|+++|.+|..|+||||+|+..++.. -....+++++|+++|++++.+|..|. ||||++.. +++
T Consensus 59 ~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~--~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv 136 (186)
T 3t8k_A 59 MFLINKGADIKSRTKEGTTLFFPLFQGGGND--ITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLY 136 (186)
T ss_dssp HHHHHTTCCSSCCCTTCCCTHHHHHHHCTTC--HHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCcHHHHHHHcCCcc--hhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHH
Confidence 9999999999999999999999999987631 01112789999999999999999999 99999322 367
Q ss_pred HHHHh-hcccchhH
Q psy8420 149 DLILR-TLTKINLK 161 (199)
Q Consensus 149 ~~ll~-~~~~~~~~ 161 (199)
+.|++ .+++....
T Consensus 137 ~~Ll~~~gad~~~~ 150 (186)
T 3t8k_A 137 KLIFSQSGLQLLIK 150 (186)
T ss_dssp HHHHTSTTCCTTCC
T ss_pred HHHHHhcCCCCccc
Confidence 88888 76665554
No 89
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.83 E-value=6.4e-22 Score=151.31 Aligned_cols=124 Identities=14% Similarity=0.072 Sum_probs=111.0
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL 81 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 81 (199)
|..|.||||+|+..++ .++++.|++.|++++.+|..|.||||+|+.. ++.+++++|
T Consensus 51 d~~g~tpLh~A~~~g~---------~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~---------------g~~~~v~~L 106 (229)
T 2vge_A 51 NEEGITALHNAICGAN---------YSIVDFLITAGANVNSPDSHGWTPLHCAASC---------------NDTVICMAL 106 (229)
T ss_dssp CTTSCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT---------------TCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc---------------CCHHHHHHH
Confidence 5789999999999999 9999999999999999999999999999999 999999999
Q ss_pred HhcCCCCccCC-CCCCcHHHHH--HhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc-ccchHHHHHHhhccc
Q psy8420 82 IRCGADVNAKD-YQGNTPLHII--ATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA-TTTGVADLILRTLTK 157 (199)
Q Consensus 82 l~~ga~v~~~d-~~g~tpl~~a--~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~-~~~~~~~~ll~~~~~ 157 (199)
++.|++++..+ ..|.||||+| +..++. +++++|+++|++++..|..|.||++. +.....+.+++.+.+
T Consensus 107 l~~ga~~~~~~~~~g~tpL~~A~a~~~~~~--------~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~ 178 (229)
T 2vge_A 107 VQHGAAIFATTLSDGATAFEKCDPYREGYA--------DCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGES 178 (229)
T ss_dssp HTTTCCTTCCCSSTTCCTGGGCCTTSTTHH--------HHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCE
T ss_pred HHcCCCcccccCCCCCCHHHHHHHHhcChH--------HHHHHHHHcCCCcccccCCchHHHHHHhhccccccCcccccc
Confidence 99999999997 6999999999 888999 99999999999999999999999885 444444555555443
No 90
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.82 E-value=1.1e-20 Score=136.03 Aligned_cols=109 Identities=15% Similarity=0.173 Sum_probs=83.1
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT 63 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~ 63 (199)
|..|.||||+|+. ++ .++++.|++.|++++.++..|.||||+|+..++ ++ |.
T Consensus 35 ~~~g~t~L~~A~~-~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 104 (162)
T 1ihb_A 35 NGFGRTALQVMKL-GN---------PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104 (162)
T ss_dssp CTTSCCHHHHCCS-SC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CccCccHHHHHHc-Cc---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 5678888888888 87 888888888888888888888888888888865 22 45
Q ss_pred ccccccccCCcHHHHHHHHhcCCC-CccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCC
Q psy8420 64 FHTNDVCKFPCAATTKLLIRCGAD-VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH 128 (199)
Q Consensus 64 ~~l~~~~~~~~~~~~~~Ll~~ga~-v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~ 128 (199)
+|++.|+..++.+++++|+++|++ ++..+..|.||+|+|+..++. +++++|+++|++
T Consensus 105 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~--------~~~~~Ll~~GAd 162 (162)
T 1ihb_A 105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN--------EVVSLMQANGAG 162 (162)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHTC--
T ss_pred CHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCH--------HHHHHHHHhCCC
Confidence 666666666777777777777776 577777777777777777777 777777777764
No 91
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.82 E-value=3.7e-20 Score=134.60 Aligned_cols=108 Identities=18% Similarity=0.144 Sum_probs=92.1
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT 63 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~ 63 (199)
|..|.||||+|+..++ .++++.|++.|++++.++..|.||||+|+..++ ++ |.
T Consensus 44 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~ 114 (169)
T 2y1l_E 44 DASGWTPLHLAAFNGH---------LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH 114 (169)
T ss_dssp CTTSCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 5789999999999999 999999999999999999999999999999977 22 56
Q ss_pred ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcC
Q psy8420 64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG 126 (199)
Q Consensus 64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g 126 (199)
+|++.|+..++.+++++|+++|++++.+|..|.||+++|+..++. +++++|+++|
T Consensus 115 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~--------~~~~~L~~~G 169 (169)
T 2y1l_E 115 TPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE--------DLAEILQKLN 169 (169)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHTC-
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCH--------HHHHHHHHcC
Confidence 777778888888888888888888888888888888888888887 8888887765
No 92
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.82 E-value=8.7e-20 Score=144.96 Aligned_cols=124 Identities=20% Similarity=0.267 Sum_probs=111.5
Q ss_pred hhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccc------ccCCCchHHHHHHhcCCCCCcccccccccCCcHHHH
Q psy8420 5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSV------ASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT 78 (199)
Q Consensus 5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~------~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~ 78 (199)
..++||.|+..+. .+.++.|+..|++++. .+..|.||||+|+..+ ..++.+++
T Consensus 151 ~~~~L~~A~~~g~---------~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~------------~~~~~~iv 209 (301)
T 2b0o_E 151 EPQRLWTAICNRD---------LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVA------------NQASLPLV 209 (301)
T ss_dssp CHHHHHHHHHTTC---------HHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTC------------CTTTHHHH
T ss_pred hHHHHhhhhhccC---------HHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhc------------ccCcHHHH
Confidence 4578999999999 8999999999999998 6889999999999861 12689999
Q ss_pred HHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT 154 (199)
Q Consensus 79 ~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~ 154 (199)
++|++.|++++.+|..|+||||+|+..++. +++++|+++|++++.+|..|.|||++ ...++++.|++.
T Consensus 210 ~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~--------~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ 281 (301)
T 2b0o_E 210 DFIIQNGGHLDAKAADGNTALHYAALYNQP--------DCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA 281 (301)
T ss_dssp HHHHHHSSCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 999999999999999999999999999999 99999999999999999999999999 556778888877
Q ss_pred ccc
Q psy8420 155 LTK 157 (199)
Q Consensus 155 ~~~ 157 (199)
+.+
T Consensus 282 ga~ 284 (301)
T 2b0o_E 282 QAG 284 (301)
T ss_dssp HHH
T ss_pred cCC
Confidence 443
No 93
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.81 E-value=2.5e-19 Score=140.77 Aligned_cols=124 Identities=18% Similarity=0.243 Sum_probs=109.9
Q ss_pred hhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcc------cccCCCchHHHHHHhcCCCCCcccccccccCCcHHHH
Q psy8420 5 LVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLS------VASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT 78 (199)
Q Consensus 5 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~------~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~ 78 (199)
..++|+.|+..+. .+.++.++..|++++ ..+..|.||||+|+..+ ..++.+++
T Consensus 130 ~l~~l~~a~~~~d---------~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~------------~~~~~~~v 188 (278)
T 1dcq_A 130 KLHSLCEAVKTRD---------IFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSV------------DRTSLHIV 188 (278)
T ss_dssp HHHHHHHHHHTTC---------HHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHC------------CTTTHHHH
T ss_pred hhhhhhhHhhhcc---------cHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhc------------ccchHHHH
Confidence 4578999999888 899999999999954 44789999999999872 12589999
Q ss_pred HHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT 154 (199)
Q Consensus 79 ~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~ 154 (199)
++|+++|+++|.+|..|+||||+|+..++. +++++|+++|++++.+|..|.||||+ ...++++.|++.
T Consensus 189 ~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~--------~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 260 (278)
T 1dcq_A 189 DFLVQNSGNLDKQTGKGSTALHYCCLTDNA--------ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260 (278)
T ss_dssp HHHHHHCSCTTCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCCCccccCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 999999999999999999999999999999 99999999999999999999999999 566788888887
Q ss_pred ccc
Q psy8420 155 LTK 157 (199)
Q Consensus 155 ~~~ 157 (199)
++.
T Consensus 261 ga~ 263 (278)
T 1dcq_A 261 LSG 263 (278)
T ss_dssp HTT
T ss_pred CCC
Confidence 554
No 94
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.81 E-value=1.8e-19 Score=126.53 Aligned_cols=93 Identities=22% Similarity=0.200 Sum_probs=89.3
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL 81 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 81 (199)
|..|.||||+|+..++ .++++.|++.|++++.+|..|.||||+|+.. ++.+++++|
T Consensus 44 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~---------------~~~~~v~~L 99 (136)
T 2jab_A 44 DEYGLTPLYLATAHGH---------LEIVEVLLKNGADVNAVDAIGFTPLHLAAFI---------------GHLEIAEVL 99 (136)
T ss_dssp CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH---------------TCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc---------------CCHHHHHHH
Confidence 5789999999999999 9999999999999999999999999999999 999999999
Q ss_pred HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcC
Q psy8420 82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG 126 (199)
Q Consensus 82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g 126 (199)
+++|++++.+|..|.||||+|+..++. +++++|+++|
T Consensus 100 l~~g~~~~~~~~~g~tpl~~A~~~~~~--------~~~~~Ll~~G 136 (136)
T 2jab_A 100 LKHGADVNAQDKFGKTAFDISIGNGNE--------DLAEILQKLN 136 (136)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHC-
T ss_pred HHcCCCCcCcCCCCCCHHHHHHHCCCH--------HHHHHHHHcC
Confidence 999999999999999999999999999 9999999876
No 95
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.81 E-value=2.2e-20 Score=131.22 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=90.7
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCC-CchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQ-NQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL 80 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~-g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~ 80 (199)
|..|.||||+|+. ++ .++++.|++.|++++.++.. |.||||+|+.. ++.+++++
T Consensus 42 ~~~g~t~L~~A~~-~~---------~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~---------------~~~~~v~~ 96 (136)
T 1d9s_A 42 NRFGRRPIQVMMM-GS---------AQVAELLLLHGAEPNCADPATLTRPVHDAARE---------------GFLDTLVV 96 (136)
T ss_dssp CTTCCTTTTTSTT-SC---------HHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHH---------------TCHHHHHH
T ss_pred CCCCCCHHHHHHc-CC---------HHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHc---------------CCHHHHHH
Confidence 5789999999999 99 99999999999999999999 99999999999 99999999
Q ss_pred HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCC
Q psy8420 81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH 128 (199)
Q Consensus 81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~ 128 (199)
|+++|++++.+|..|.||||+|+..++. +++++|+++|+|
T Consensus 97 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--------~~~~~Ll~~Gad 136 (136)
T 1d9s_A 97 LHRAGARLDVCDAWGRLPVDLAEEQGHR--------DIARYLHAATGD 136 (136)
T ss_dssp HHHTCCCCCCCSSSSSCHHHHHHHHTCH--------HHHHHHHHHHCC
T ss_pred HHHcCCCCCccCCCCCCHHHHHHHcCCH--------HHHHHHHHcCCC
Confidence 9999999999999999999999999999 999999999986
No 96
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.81 E-value=5.4e-20 Score=146.13 Aligned_cols=104 Identities=18% Similarity=0.120 Sum_probs=97.2
Q ss_pred ccchhhHHHHHHHH---hhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHH
Q psy8420 2 EDNLVTSLYLLVIL---TKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT 78 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~---~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~ 78 (199)
+..|.||||+|+.. ++ .++++.|++.|++++.+|..|.||||+|+.. ++.+++
T Consensus 187 ~~~g~t~Lh~A~~~~~~~~---------~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~---------------g~~~~v 242 (301)
T 2b0o_E 187 QAPEELVLHLAVKVANQAS---------LPLVDFIIQNGGHLDAKAADGNTALHYAALY---------------NQPDCL 242 (301)
T ss_dssp CSCEECHHHHHHHTCCTTT---------HHHHHHHHHHSSCTTCCCTTCCCHHHHHHHT---------------TCHHHH
T ss_pred CCCCccHHHHHHHhcccCc---------HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc---------------CCHHHH
Confidence 56899999999997 66 8999999999999999999999999999999 999999
Q ss_pred HHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCccccc
Q psy8420 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQAT 143 (199)
Q Consensus 79 ~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~~ 143 (199)
++|+++|++++.+|..|.||||+|+..++. +++++|+++|++ .|.||||++
T Consensus 243 ~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~--------~iv~~Ll~~ga~------~g~tpLh~A 293 (301)
T 2b0o_E 243 KLLLKGRALVGTVNEAGETALDIARKKHHK--------ECEELLEQAQAG------TFAFPLHVD 293 (301)
T ss_dssp HHHHHTTCCCSCCCTTSCCHHHHHHHHTCH--------HHHHHHHHHHHH------TTSSCCC--
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHcCCH--------HHHHHHHHhcCC------CCCChhHHH
Confidence 999999999999999999999999999999 999999999886 589999983
No 97
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.81 E-value=1.1e-20 Score=148.19 Aligned_cols=140 Identities=17% Similarity=0.170 Sum_probs=122.0
Q ss_pred chhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCC--cccccCCCchHHHHHHhcCC-CC------------------C
Q psy8420 4 NLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNK--LSVASRQNQSLLHLCVNYET-PV------------------D 62 (199)
Q Consensus 4 ~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~--i~~~~~~g~t~L~~a~~~~~-~~------------------~ 62 (199)
.+.+++|.|+..+. ...++.++..+.+ +|.+|..|.||||+|+..|+ ++ |
T Consensus 75 ~~~~~l~~a~~~~~---------~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g 145 (276)
T 4hbd_A 75 ACRSDAHPELVRRH---------LVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAG 145 (276)
T ss_dssp HHSTTCCHHHHHHH---------HHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTS
T ss_pred HhccCCCHHHHHHH---------HHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCC
Confidence 35677888888888 8899999887666 89999999999999999988 22 6
Q ss_pred cccccccc-----cCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCC
Q psy8420 63 TFHTNDVC-----KFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGL 137 (199)
Q Consensus 63 ~~~l~~~~-----~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~ 137 (199)
.+|++.++ ..+..+++++|++.|..++..+..|+||||+|+..++. +++++|+++|++++.+|..|.
T Consensus 146 ~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~--------~~v~~Ll~~gad~n~~d~~G~ 217 (276)
T 4hbd_A 146 YSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRV--------DVVKALLACEADVNVQDDDGS 217 (276)
T ss_dssp CCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCH--------HHHHHHHHTTCCTTCCCTTSC
T ss_pred CCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH--------HHHHHHHhCCCCCCCCCCCCC
Confidence 77888877 55789999999999999999999999999999999999 999999999999999999999
Q ss_pred Ccccc----ccchHHHHHHh-hcccchh
Q psy8420 138 TPIQA----TTTGVADLILR-TLTKINL 160 (199)
Q Consensus 138 tpl~~----~~~~~~~~ll~-~~~~~~~ 160 (199)
||||+ ...++++.|++ .+.+...
T Consensus 218 TpLh~A~~~g~~~iv~~Ll~~~gad~~~ 245 (276)
T 4hbd_A 218 TALMCACEHGHKEIAGLLLAVPSCDISL 245 (276)
T ss_dssp CHHHHHHHHTCHHHHHHHHTSTTCCTTC
T ss_pred CHHHHHHHCCCHHHHHHHHhcCCCCCcC
Confidence 99999 56778899998 5555443
No 98
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.80 E-value=5.9e-20 Score=136.02 Aligned_cols=108 Identities=19% Similarity=0.130 Sum_probs=88.4
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCC-CC-----------------Cc
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYET-PV-----------------DT 63 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~-~~-----------------~~ 63 (199)
|..|.||||+|+..++ .++++.|++.|++++.++..|.||||+|+..++ ++ |.
T Consensus 65 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 135 (192)
T 2rfm_A 65 DIEGSTALIWAVKNNR---------LGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE 135 (192)
T ss_dssp CTTSCCHHHHHHHTTC---------HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCC
T ss_pred cccCccHHHHHHHcCC---------HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence 5679999999999999 999999999999999999999999999999966 22 56
Q ss_pred ccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcC
Q psy8420 64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG 126 (199)
Q Consensus 64 ~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g 126 (199)
+|++.|+..++.+++++|+++|++++.+|..|.||+++|+..++. +++++|+++|
T Consensus 136 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~--------~~v~~Ll~~~ 190 (192)
T 2rfm_A 136 TPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ--------EVIKIFTEVR 190 (192)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH--------HHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcH--------HHHHHHHhcc
Confidence 677777777777777777777777777777777777777777777 7777777653
No 99
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.80 E-value=4.7e-19 Score=121.78 Aligned_cols=95 Identities=31% Similarity=0.335 Sum_probs=91.8
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL 81 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 81 (199)
|..|.||||+|+..++ .++++.|++.|++++.++..|.||||+|+.. ++.+++++|
T Consensus 32 ~~~g~t~L~~A~~~~~---------~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~---------------~~~~~~~~L 87 (126)
T 1n0r_A 32 DKNGRTPLHLAARNGH---------LEVVKLLLEAGADVNAKDKNGRTPLHLAARN---------------GHLEVVKLL 87 (126)
T ss_dssp CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---------------TCHHHHHHH
T ss_pred CCCCCcHHHHHHHcCc---------HHHHHHHHHcCCCCcccCCCCCcHHHHHHHc---------------ChHHHHHHH
Confidence 5689999999999999 9999999999999999999999999999999 999999999
Q ss_pred HhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCC
Q psy8420 82 IRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH 128 (199)
Q Consensus 82 l~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~ 128 (199)
+++|++++.+|..|.||+++|+..++. +++++|+++|++
T Consensus 88 l~~g~~~~~~~~~g~t~l~~A~~~~~~--------~~~~~Ll~~Gad 126 (126)
T 1n0r_A 88 LEAGADVNAKDKNGRTPLHLAARNGHL--------EVVKLLLEAGAY 126 (126)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHHTCC
T ss_pred HHcCCCCcccCCCCCCHHHHHHHcCcH--------HHHHHHHHcCCC
Confidence 999999999999999999999999999 999999999986
No 100
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=1.6e-19 Score=152.50 Aligned_cols=109 Identities=17% Similarity=0.032 Sum_probs=90.7
Q ss_pred ccchhhHHHHHHH---HhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHH
Q psy8420 2 EDNLVTSLYLLVI---LTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT 78 (199)
Q Consensus 2 ~~~g~t~Lh~a~~---~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~ 78 (199)
|..|.||||+||. .|+ .++++.|++.|+++|.+|..|.||||+|+.. ++.+++
T Consensus 168 ~~~g~t~Lh~A~~~a~~g~---------~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~---------------g~~~~v 223 (497)
T 3lvq_E 168 QAPEELVLHLAVKVANQAS---------LPLVDFIIQNGGHLDAKAADGNTALHYAALY---------------NQPDCL 223 (497)
T ss_dssp CCSCBCHHHHHHHTCCTTT---------HHHHHHHHHHSCCTTCCCSSSCCHHHHHTTT---------------TCHHHH
T ss_pred ccccchHHHHHHHhccccc---------HHHHHHHHHcCCCCCccCCCCCcHHHHHHHc---------------CCHHHH
Confidence 5689999999987 777 9999999999999999999999999999999 999999
Q ss_pred HHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc
Q psy8420 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA 142 (199)
Q Consensus 79 ~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~ 142 (199)
++|+++|++++.+|..|.||||+|+..++. +++++|+++|++++....+..++|..
T Consensus 224 ~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--------~~~~~Ll~~ga~~~~~~~h~~~~~~~ 279 (497)
T 3lvq_E 224 KLLLKGRALVGTVNEAGETALDIARKKHHK--------ECEELLEQAQAGTFAFPLHVDYSWVI 279 (497)
T ss_dssp HHHHHTCCCCSCCCTTCCCHHHHHHHTTCH--------HHHHHHHHTCC---------------
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHcCCH--------HHHHHHHHhCCCCCCCcceeeccccC
Confidence 999999999999999999999999999999 99999999999998865555555544
No 101
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.79 E-value=5.1e-19 Score=138.99 Aligned_cols=96 Identities=25% Similarity=0.205 Sum_probs=91.9
Q ss_pred ccchhhHHHHHHHH---hhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHH
Q psy8420 2 EDNLVTSLYLLVIL---TKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT 78 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~---~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~ 78 (199)
|..|.||||+|+.. ++ .++++.|++.|+++|.+|..|.||||+|+.. ++.+++
T Consensus 166 ~~~g~t~Lh~A~~~~~~~~---------~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~---------------g~~~~v 221 (278)
T 1dcq_A 166 HEPDETALHLAVRSVDRTS---------LHIVDFLVQNSGNLDKQTGKGSTALHYCCLT---------------DNAECL 221 (278)
T ss_dssp SSTTCBHHHHHHHHCCTTT---------HHHHHHHHHHCSCTTCCCTTCCCHHHHHHHT---------------TCHHHH
T ss_pred ccCCCCcchHHHHhcccch---------HHHHHHHHHCCCCccccCCCCCCHHHHHHHc---------------CCHHHH
Confidence 56799999999999 77 8999999999999999999999999999999 999999
Q ss_pred HHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCC
Q psy8420 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHM 129 (199)
Q Consensus 79 ~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~ 129 (199)
++|+++|++++.+|..|.||||+|+..++. +++++|+++|++.
T Consensus 222 ~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~--------~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 222 KLLLRGKASIEIANESGETPLDIAKRLKHE--------HCEELLTQALSGR 264 (278)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHHHTTC
T ss_pred HHHHHcCCCCCCccCCCCCHHHHHHHcCCH--------HHHHHHHHcCCCC
Confidence 999999999999999999999999999999 9999999998854
No 102
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.79 E-value=8.6e-19 Score=118.82 Aligned_cols=90 Identities=22% Similarity=0.247 Sum_probs=85.3
Q ss_pred CccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420 1 MEDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL 80 (199)
Q Consensus 1 ~~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~ 80 (199)
.|..|.||||+|+..++ .++++.|++.|++++.+|..|.||||+|+.. ++.+++++
T Consensus 20 ~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~---------------~~~~~v~~ 75 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQ---------DDEVRILMANGADVAAKDKNGSTPLHLAARN---------------GHLEVVKL 75 (110)
T ss_dssp --CCHHHHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT---------------TCHHHHHH
T ss_pred cCCccchHHHHHHHcCC---------HHHHHHHHHcCCCCCccCCCCCCHHHHHHHc---------------CCHHHHHH
Confidence 36889999999999999 9999999999999999999999999999999 99999999
Q ss_pred HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHH
Q psy8420 81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDL 122 (199)
Q Consensus 81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~L 122 (199)
|+++|++++.+|..|.||||+|+..++. +++++|
T Consensus 76 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--------~~~~~L 109 (110)
T 2zgd_A 76 LLEAGADVXAQDKFGKTAFDISIDNGNE--------DLAEIL 109 (110)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCH--------HHHHHH
T ss_pred HHHcCCCccccccCCCcHHHHHHHcCCH--------HHHHHh
Confidence 9999999999999999999999999999 998876
No 103
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.79 E-value=6.2e-19 Score=115.79 Aligned_cols=88 Identities=34% Similarity=0.501 Sum_probs=80.1
Q ss_pred CCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHc
Q psy8420 46 QNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTEN 125 (199)
Q Consensus 46 ~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ 125 (199)
+|.||||+|+.. ++.+++++|++.|++++.+|..|+||||+|+..++. +++++|+++
T Consensus 1 ~g~t~L~~A~~~---------------~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~--------~~v~~Ll~~ 57 (93)
T 1n0q_A 1 NGRTPLHLAARN---------------GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL--------EVVKLLLEA 57 (93)
T ss_dssp --CCHHHHHHHH---------------TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHT
T ss_pred CCCcHHHHHHHc---------------CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCH--------HHHHHHHHc
Confidence 478999999999 999999999999999999999999999999999999 999999999
Q ss_pred CCCCCCCCCCCCCcccc----ccchHHHHHHhhcc
Q psy8420 126 GAHMDTVNNKGLTPIQA----TTTGVADLILRTLT 156 (199)
Q Consensus 126 ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~ 156 (199)
|++++.+|..|.||||+ ...++++.|++.++
T Consensus 58 ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999999999999998 45667788877654
No 104
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.75 E-value=4.4e-19 Score=142.17 Aligned_cols=114 Identities=11% Similarity=0.012 Sum_probs=97.8
Q ss_pred HHHHHHHhhccccCChhHHHHHHHHHHcCCCccc-ccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCC
Q psy8420 9 LYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSV-ASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGAD 87 (199)
Q Consensus 9 Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~-~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~ 87 (199)
+|+++..+. .++++.|+..|+++|. ++..|.||||+|+.. ++.+++++|+++|++
T Consensus 101 ~~~a~~~~~---------~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~---------------g~~~~v~~Ll~~Gad 156 (327)
T 1sw6_A 101 QHVSFDSLL---------QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI---------------ANLELVKHLVKHGSN 156 (327)
T ss_dssp ---CHHHHH---------HHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHT---------------TCHHHHHHHHHTTCC
T ss_pred hHHHHHhhH---------HHHHHHHHhcCCCcccccCCCCCcHHHHHHHc---------------CCHHHHHHHHHcCCC
Confidence 366666666 7888899999999999 899999999999999 999999999999999
Q ss_pred CccCCCCCCcHHHHHHhccC---cccchhhHHHHHHHHHHcC-CCCCCCCCCCCCccccc--------cchHHHHHHhh
Q psy8420 88 VNAKDYQGNTPLHIIATYER---AISDFQTLHTIILDLTENG-AHMDTVNNKGLTPIQAT--------TTGVADLILRT 154 (199)
Q Consensus 88 v~~~d~~g~tpl~~a~~~~~---~~~~~~~~~~~~~~Ll~~g-a~~~~~~~~g~tpl~~~--------~~~~~~~ll~~ 154 (199)
++.+|..|+||||+|+..++ . +++..|++++ ++++.+|..|.||||++ ..++++.|++.
T Consensus 157 ~n~~d~~g~TpLh~A~~~g~~~~~--------~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~ 227 (327)
T 1sw6_A 157 RLYGDNMGESCLVKAVKSVNNYDS--------GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI 227 (327)
T ss_dssp TTBCCTTCCCHHHHHHHSSHHHHT--------TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHhcccccH--------HHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence 99999999999999999887 6 6777777775 78999999999999983 34667777766
No 105
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.74 E-value=1e-18 Score=132.22 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=84.3
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHc-CCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFS-LNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL 80 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~-g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~ 80 (199)
|..|.||||+|+..++ .++++.|+.. |++++.+|..|.||||+|+.. ++.+++++
T Consensus 103 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~---------------~~~~~v~~ 158 (222)
T 3ehr_A 103 DKAGSTALYWACHGGH---------KDIVEMLFTQPNIELNQQNKLGDTALHAAAWK---------------GYADIVQL 158 (222)
T ss_dssp CTTSCCHHHHHHHTTC---------HHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH---------------TCHHHHHH
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHcCCCCCccccCCCCCCHHHHHHHc---------------CCHHHHHH
Confidence 5789999999999999 9999999998 999999999999999999999 99999999
Q ss_pred HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCC
Q psy8420 81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136 (199)
Q Consensus 81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g 136 (199)
|+++|++++.+|..|.||+++|+..+.. ++++.|+..|+.....+..+
T Consensus 159 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~--------~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 159 LLAKGARTDLRNIEKKLAFDMATNAACA--------SLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHHHTCCSCCCCTTSCCHHHHCCSHHHH--------HHHC----------------
T ss_pred HHHcCCCCccccCCCCCHHHHhcchhHH--------HHHHHHhccchhhhccchhh
Confidence 9999999999999999999999999988 99999999999988887655
No 106
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.73 E-value=1e-17 Score=117.41 Aligned_cols=100 Identities=21% Similarity=0.264 Sum_probs=89.9
Q ss_pred CCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHH
Q psy8420 37 LNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLH 116 (199)
Q Consensus 37 g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~ 116 (199)
|+++ .++..|.||||+|+.. ++.+++++|++.|++++.+|..|.||||+|+..++.
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~---------------~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-------- 56 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIK---------------GDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHL-------- 56 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHH---------------TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH--------
T ss_pred CCCC-CcCCCCCCHHHHHHHc---------------CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH--------
Confidence 5677 7889999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchh
Q psy8420 117 TIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINL 160 (199)
Q Consensus 117 ~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~ 160 (199)
+++++|+++|++++.+|..|.||||+ ...++++.|++.+.+...
T Consensus 57 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 104 (137)
T 3c5r_A 57 KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104 (137)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999 566788999988666443
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.73 E-value=8.6e-18 Score=136.88 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=89.0
Q ss_pred cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHH
Q psy8420 3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLI 82 (199)
Q Consensus 3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 82 (199)
..|.||||+|+..++ .++++.|++.|++++.+|..|.||||+|+.. ++.+++++|+
T Consensus 233 ~~g~TpLh~Aa~~g~---------~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~---------------g~~~~v~~LL 288 (368)
T 3jue_A 233 QDNATPLIQATAANS---------LLACEFLLQNGANVNQADSAGRGPLHHATIL---------------GHTGLACLFL 288 (368)
T ss_dssp TTCCCHHHHHHHTTC---------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH---------------TCHHHHHHHH
T ss_pred cCCCCHHHHHHHCCC---------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc---------------CcHHHHHHHH
Confidence 679999999999999 9999999999999999999999999999999 9999999999
Q ss_pred hcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcC---CCCCCCCCCCCCcccc
Q psy8420 83 RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENG---AHMDTVNNKGLTPIQA 142 (199)
Q Consensus 83 ~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~g---a~~~~~~~~g~tpl~~ 142 (199)
++|++++..|..|.||||+|+..++. +++++|+..+ ++....+..+.|++++
T Consensus 289 ~~Gad~~~~d~~G~TpL~~A~~~g~~--------~iv~lLl~~~~~~~~~~~~~~~~~t~l~i 343 (368)
T 3jue_A 289 KRGADLGARDSEGRDPLTIAMETANA--------DIVTLLRLAKMREAEAAQGQAGDETYLDI 343 (368)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCH--------HHHHHHHHHHC------------------
T ss_pred HCcCCCCCcCCCCCCHHHHHHHCCCH--------HHHHHHHHcCCCcccccccCCCCCCHHHH
Confidence 99999999999999999999999999 9999999775 4445566678888876
No 108
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.72 E-value=2.5e-17 Score=121.20 Aligned_cols=83 Identities=22% Similarity=0.287 Sum_probs=78.3
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccccc-CCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVAS-RQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL 80 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~-~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~ 80 (199)
|..|.||||+|+..++ .++++.|++.|++++.++ ..|.||||+|+.. ++.+++++
T Consensus 73 d~~g~t~L~~A~~~~~---------~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~---------------~~~~~v~~ 128 (183)
T 3deo_A 73 DENGRTALLFVAGLGS---------DKCVRLLAEAGADLDHRDMRGGLTALHMAAGY---------------VRPEVVEA 128 (183)
T ss_dssp CTTSCCHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT---------------TCHHHHHH
T ss_pred CCCCCCHHHHHHHcCC---------HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc---------------CcHHHHHH
Confidence 6789999999999999 999999999999999998 8999999999999 99999999
Q ss_pred HHhcCCCCccCCCCCCcHHHHHHhccCc
Q psy8420 81 LIRCGADVNAKDYQGNTPLHIIATYERA 108 (199)
Q Consensus 81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~ 108 (199)
|+++|++++.+|..|.||||+|+..++.
T Consensus 129 Ll~~ga~~~~~d~~g~tpl~~A~~~~~~ 156 (183)
T 3deo_A 129 LVELGADIEVEDERGLTALELAREILKT 156 (183)
T ss_dssp HHHHTCCTTCCCTTSCCHHHHHHHHHHT
T ss_pred HHHcCCCCcCCCCCCCCHHHHHHHhccC
Confidence 9999999999999999999999886544
No 109
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.71 E-value=3.2e-17 Score=126.17 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=90.2
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCccccc-CCCchHHHHHHhcCCCCCcccccccccCCcHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVAS-RQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL 80 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~-~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~ 80 (199)
|..|.||||+|+..|+ .++++.|++.|++++.++ ..|.||||+|+.. ++.+++++
T Consensus 74 d~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~---------------g~~~~v~~ 129 (244)
T 3ui2_A 74 DENGRTALLFVAGLGS---------DKCVRLLAEAGADLDHRDMRGGLTALHMAAGY---------------VRPEVVEA 129 (244)
T ss_dssp CTTSCBHHHHHHHHTC---------HHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT---------------TCHHHHHH
T ss_pred CCCCCCHHHHHHHCCC---------HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc---------------CCHHHHHH
Confidence 5789999999999999 999999999999999998 7899999999999 99999999
Q ss_pred HHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhh
Q psy8420 81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLILRT 154 (199)
Q Consensus 81 Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~ 154 (199)
|+++|++++.+|..|.||||+|+..+.. ..+.||+++ ...++++.|++.
T Consensus 130 Ll~~ga~~~~~d~~g~t~l~~A~~~~~~-------------------------~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 130 LVELGADIEVEDERGLTALELAREILKT-------------------------TPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHHHTT-------------------------CCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCcHHHHHHHHHhc-------------------------cCCCCHHHHHHHcChHHHHHHHHHh
Confidence 9999999999999999999999865322 456788887 344556666554
No 110
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.71 E-value=8.5e-18 Score=115.78 Aligned_cols=80 Identities=16% Similarity=0.077 Sum_probs=76.1
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCcccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLL 81 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~L 81 (199)
|..|.||||+|+..++ .++++.|++.|++++.+|..|.||||+|+.. ++.+++++|
T Consensus 37 ~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~---------------~~~~~v~~L 92 (123)
T 3aaa_C 37 LEGGRKPLHYAADCGQ---------LEILEFLLLKGADINAPDKHHITPLLSAVYE---------------GHVSCVKLL 92 (123)
T ss_dssp CTTSSCHHHHHHHTTC---------HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH---------------TCHHHHHHH
T ss_pred CCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc---------------CCHHHHHHH
Confidence 5689999999999999 9999999999999999999999999999999 999999999
Q ss_pred HhcCCCCccCCCCCCcHHHHHHhc
Q psy8420 82 IRCGADVNAKDYQGNTPLHIIATY 105 (199)
Q Consensus 82 l~~ga~v~~~d~~g~tpl~~a~~~ 105 (199)
+++|++++.+|..|.||+|+|...
T Consensus 93 l~~ga~~~~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 93 LSKGADKTVKGPDGLTAFEATDNQ 116 (123)
T ss_dssp HHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred HHcCCCCCCcCCCCCCHHHHhCCH
Confidence 999999999999999999998443
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.71 E-value=3.2e-17 Score=111.45 Aligned_cols=96 Identities=30% Similarity=0.389 Sum_probs=88.0
Q ss_pred cccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHHHH
Q psy8420 42 VASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD 121 (199)
Q Consensus 42 ~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~ 121 (199)
.+|..|.||||+|+.. ++.+++++|++.|++++..|..|.||||+|+..++. +++++
T Consensus 4 ~~d~~g~t~L~~A~~~---------------~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~--------~~~~~ 60 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKN---------------GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHA--------EIVKL 60 (115)
T ss_dssp CCSCSSCCHHHHHHHH---------------TCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCH--------HHHHH
T ss_pred ccCCCCCCHHHHHHHc---------------CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcH--------HHHHH
Confidence 4678999999999999 999999999999999999999999999999999999 99999
Q ss_pred HHHcCCCCCCCCCCCCCcccc----ccchHHHHHHhhcccchh
Q psy8420 122 LTENGAHMDTVNNKGLTPIQA----TTTGVADLILRTLTKINL 160 (199)
Q Consensus 122 Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~ll~~~~~~~~ 160 (199)
|+++|++++.+|..|.|||++ ...++++.|++.+++...
T Consensus 61 Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~ 103 (115)
T 2l6b_A 61 LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103 (115)
T ss_dssp HTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHH
T ss_pred HHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCc
Confidence 999999999999999999998 456778888888766444
No 112
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.70 E-value=2.3e-18 Score=140.68 Aligned_cols=150 Identities=12% Similarity=0.099 Sum_probs=105.8
Q ss_pred cchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCC---cccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHH
Q psy8420 3 DNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNK---LSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTK 79 (199)
Q Consensus 3 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~---i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~ 79 (199)
.++.||||+|+..|+ .++++.|++.|+. .+..+..|.||||+|+.. |+.++++
T Consensus 90 ~~~~T~Lh~Aa~~G~---------~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~---------------G~~eiv~ 145 (376)
T 2aja_A 90 IKSEVICFVAAITGC---------SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN---------------GHLHVLN 145 (376)
T ss_dssp CCHHHHHHHHHHHCC---------HHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT---------------TCHHHHH
T ss_pred CCcCCHHHHHHHcCC---------HHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc---------------CCHHHHH
Confidence 356799999999999 9999999999872 223445678999999999 8889999
Q ss_pred HHHhcCCCC---ccCCCCCCcHHHHHHhccCcccchhhHHHHHHHHHHcCCCCCC--CCCCCCCcccc-c----cchHHH
Q psy8420 80 LLIRCGADV---NAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDT--VNNKGLTPIQA-T----TTGVAD 149 (199)
Q Consensus 80 ~Ll~~ga~v---~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~~~Ll~~ga~~~~--~~~~g~tpl~~-~----~~~~~~ 149 (199)
+|+++|+++ +..+.. .||||+|+..|+. +++++|+++|++++. .|..|.||||+ + ..++++
T Consensus 146 ~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~--------eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~ 216 (376)
T 2aja_A 146 RLCELAPTEIMAMIQAEN-YHAFRLAAENGHL--------HVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 216 (376)
T ss_dssp HHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCH--------HHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHhCCCCccccccCCCC-CCHHHHHHHCCCH--------HHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence 999888752 222223 8899999998888 899999988888877 78888889887 3 245677
Q ss_pred HHHhhcccchhHHHHHHHHhhccccCCCCCchhHHHHHHHhhhhhc
Q psy8420 150 LILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALD 195 (199)
Q Consensus 150 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (199)
.|++.+.. .......... .| ..++.+|+..+|++++
T Consensus 217 ~Ll~~ga~-------~~taL~~Aa~-~g--~~evv~lL~~~ga~~~ 252 (376)
T 2aja_A 217 FLLDCPVM-------LAYAEIHEFE-YG--EKYVNPFIARHVNRLK 252 (376)
T ss_dssp HHTTSHHH-------HHHHHHCTTT-TT--TTTHHHHHHHHHHHHH
T ss_pred HHHhCCCc-------cchHHHHHHH-CC--CHHHHHHHHhcCcccc
Confidence 77775421 1111111111 12 2337788888877664
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=3.1e-16 Score=106.06 Aligned_cols=80 Identities=28% Similarity=0.304 Sum_probs=73.4
Q ss_pred cccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHHHHHHhcCCCCccCCCCCCcHHHHHHhccCcccchhhHHHHH
Q psy8420 40 LSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTII 119 (199)
Q Consensus 40 i~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ll~~ga~v~~~d~~g~tpl~~a~~~~~~~~~~~~~~~~~ 119 (199)
+...+..|.|+||+|+.. ++.+++++|++.|++++.+|..|+||||+|+..++. +++
T Consensus 17 ~~~~~~~g~t~L~~A~~~---------------g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~--------~~v 73 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARA---------------GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHL--------EVV 73 (110)
T ss_dssp -----CCHHHHHHHHHHH---------------TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH--------HHH
T ss_pred ccccCCccchHHHHHHHc---------------CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH--------HHH
Confidence 445677899999999999 999999999999999999999999999999999999 999
Q ss_pred HHHHHcCCCCCCCCCCCCCcccc
Q psy8420 120 LDLTENGAHMDTVNNKGLTPIQA 142 (199)
Q Consensus 120 ~~Ll~~ga~~~~~~~~g~tpl~~ 142 (199)
++|+++|++++.+|..|.||||+
T Consensus 74 ~~Ll~~ga~~~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 74 KLLLEAGADVXAQDKFGKTAFDI 96 (110)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHcCCCccccccCCCcHHHH
Confidence 99999999999999999999998
No 114
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.64 E-value=6.1e-18 Score=138.17 Aligned_cols=117 Identities=9% Similarity=-0.043 Sum_probs=100.6
Q ss_pred ccchhhHHHHHHHHhhccccCChhHHHHHHHHHHcCCCc---ccccCCCchHHHHHHhcCCCCCcccccccccCCcHHHH
Q psy8420 2 EDNLVTSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKL---SVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT 78 (199)
Q Consensus 2 ~~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~ll~~g~~i---~~~~~~g~t~L~~a~~~~~~~~~~~l~~~~~~~~~~~~ 78 (199)
+..|.||||+|+..|+ .++++.|++.|+++ +..+.. .||||+|+.. |+.+++
T Consensus 125 ~~~~~tpL~~Aa~~G~---------~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~---------------G~~eiv 179 (376)
T 2aja_A 125 QAENYQAFRLAAENGH---------LHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAEN---------------GHLHVL 179 (376)
T ss_dssp CHHHHHHHHHHHHTTC---------HHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHT---------------TCHHHH
T ss_pred ccCCCCHHHHHHHcCC---------HHHHHHHHhCCCCccccccCCCC-CCHHHHHHHC---------------CCHHHH
Confidence 4578999999999999 99999999999762 322223 8999999999 999999
Q ss_pred HHHHhcCCCCcc--CCCCCCcHHHHHH-hccCcccchhhHHHHHHHHHHcCCCCCCCCCCCCCcccc----ccchHHHHH
Q psy8420 79 KLLIRCGADVNA--KDYQGNTPLHIIA-TYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA----TTTGVADLI 151 (199)
Q Consensus 79 ~~Ll~~ga~v~~--~d~~g~tpl~~a~-~~~~~~~~~~~~~~~~~~Ll~~ga~~~~~~~~g~tpl~~----~~~~~~~~l 151 (199)
++|+++|++++. .|..|.||||+|+ ..|+. +++++|++.|++ |.||+++ +..+++++|
T Consensus 180 ~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~--------eiv~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL 244 (376)
T 2aja_A 180 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHH--------NVINFLLDCPVM-------LAYAEIHEFEYGEKYVNPFI 244 (376)
T ss_dssp HHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH--------HHHHHHTTSHHH-------HHHHHHCTTTTTTTTHHHHH
T ss_pred HHHHHcCCccchhccCCCCCCHHHHHHHHCCCH--------HHHHHHHhCCCc-------cchHHHHHHHCCCHHHHHHH
Confidence 999999999887 8889999999999 99999 999999997753 7899998 456788888
Q ss_pred Hhhcccc
Q psy8420 152 LRTLTKI 158 (199)
Q Consensus 152 l~~~~~~ 158 (199)
++.+.+.
T Consensus 245 ~~~ga~~ 251 (376)
T 2aja_A 245 ARHVNRL 251 (376)
T ss_dssp HHHHHHH
T ss_pred HhcCccc
Confidence 8875543
Done!