RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8420
(199 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 46.2 bits (110), Expect = 8e-07
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
KLL+ GADVNA+D GNTPLH+ A ++ L ++GA ++ + G T
Sbjct: 57 KLLLEKGADVNARDKDGNTPLHLAARNGN--------LDVVKLLLKHGADVNARDKDGRT 108
Query: 139 PI 140
P+
Sbjct: 109 PL 110
Score = 35.8 bits (83), Expect = 0.004
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYER 107
KLL++ GADVNA+D G TPLH+ A
Sbjct: 90 KLLLKHGADVNARDKDGRTPLHLAAKNGH 118
Score = 33.5 bits (77), Expect = 0.020
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 89 NAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPI 140
NA+D G TPLH+ A+ ++ L ENGA ++ +N G TP+
Sbjct: 1 NARDEDGRTPLHLAASNGH--------LEVVKLLLENGADVNAKDNDGRTPL 44
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 47.3 bits (113), Expect = 2e-06
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 14/110 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
KLLI+ GADVNAKD G TPLH+ + + + + ++ GA ++ ++ G+T
Sbjct: 101 KLLIKAGADVNAKDKVGRTPLHVYLSGFNI--NPKVIRLLL----RKGADVNALDLYGMT 154
Query: 139 PIQATT--TGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLESF 186
P+ +LR L A + + ++ L+ H L+SF
Sbjct: 155 PLAVLLKSRNANVELLRLL------IDAGADVYAVDDRFRSLLHHHLQSF 198
Score = 42.3 bits (100), Expect = 7e-05
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
+ LIR G D A D GNTPLH +AT +++L L G ++ N G T
Sbjct: 206 RELIRAGCDPAATDMLGNTPLHSMATGSSC------KRSLVLPLLIAGISINARNRYGQT 259
Query: 139 PI 140
P+
Sbjct: 260 PL 261
Score = 37.7 bits (88), Expect = 0.002
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 73 PCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV 132
+ L+ GADVN + G TPLH Y + + I+ L E GA ++
Sbjct: 25 VTVEEVRRLLAAGADVNFRGEYGKTPLH---LYLH--YSSEKVKDIVRLLLEAGADVNAP 79
Query: 133 NNKGLTPIQ-----ATTTGVADLILRTLTKINLKC 162
G TP+ ATT V L+++ +N K
Sbjct: 80 ERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKD 114
Score = 26.9 bits (60), Expect = 9.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 81 LIRCGADVNAKDYQGNTPLHIIATY 105
L+ G +NA++ G TPLH A +
Sbjct: 243 LLIAGISINARNRYGQTPLHYAAVF 267
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 38.8 bits (91), Expect = 2e-04
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 40 LSVASRQNQ-SLLHLCVNYETPVDTFHTNDV----CKFPCAATTKLLIRCGADVNAKDYQ 94
L +A++ L+ L + V+ T+ + KLL+ GADVNAKD
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60
Query: 95 GNTPLHIIATYER 107
GNT LH+ A
Sbjct: 61 GNTALHLAARNGN 73
Score = 31.5 bits (72), Expect = 0.073
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 70 CKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHM 129
K KLL+ GADVN D +T LH+ A I+ L E+GA +
Sbjct: 5 AKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGN--------LEIVKLLLEHGADV 54
Query: 130 DTVNNKGLTPI 140
+ + G T +
Sbjct: 55 NAKDKDGNTAL 65
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 39.4 bits (92), Expect = 6e-04
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
KL I GA+VN D + +TPL I + I D++ + I+ L ENGA ++ N+ G T
Sbjct: 55 KLFINLGANVNGLDNEYSTPLCTILS---NIKDYKHMLDIVKILIENGADINKKNSDGET 111
Query: 139 PI 140
P+
Sbjct: 112 PL 113
Score = 34.0 bits (78), Expect = 0.038
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 57 YETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLH 116
Y TP+ T +N K+LI GAD+N K+ G TPL+ + + I++ +
Sbjct: 71 YSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLS-NGYINNLE--- 126
Query: 117 TIILDLTENGAHMDTVNNKGLTPIQ 141
I+L + ENGA ++ G T +Q
Sbjct: 127 -ILLFMIENGADTTLLDKDGFTMLQ 150
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 38.4 bits (89), Expect = 0.001
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
KLL+ GA N KD G +PLH A Y D+ + +I ++G H+ G T
Sbjct: 174 KLLLEKGAYANVKDNNGESPLHNAAEY----GDYACIKLLI----DHGNHIMNKCKNGFT 225
Query: 139 PIQ 141
P+
Sbjct: 226 PLH 228
Score = 38.4 bits (89), Expect = 0.001
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
K+L GADVN +D G P+HI + II L E GA+ + +N G +
Sbjct: 141 KMLFEYGADVNIEDDNGCYPIHIAIKH--------NFFDIIKLLLEKGAYANVKDNNGES 192
Query: 139 PIQ 141
P+
Sbjct: 193 PLH 195
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 38.3 bits (89), Expect = 0.002
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
++L+ GAD N +DY G TPLHI ++ L E GA ++ G T
Sbjct: 99 RILLTGGADPNCRDYDGRTPLHIACANGHV--------QVVRVLLEFGADPTLLDKDGKT 150
Query: 139 PIQ 141
P++
Sbjct: 151 PLE 153
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 37.1 bits (85), Expect = 0.003
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLT 123
+ KLL+ GADVNAKD G+TPLH+ A + + + L
Sbjct: 75 LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAA---LNGNPPEGNIEVAKLLL 131
Query: 124 ENGAHMDTV---NNKGLTPIQ 141
E GA +D + G TP+
Sbjct: 132 EAGADLDVNNLRDEDGNTPLH 152
Score = 32.5 bits (73), Expect = 0.10
Identities = 34/131 (25%), Positives = 48/131 (36%), Gaps = 22/131 (16%)
Query: 33 LVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGA---DVN 89
L+ S ++ + LHL P KLL+ GA N
Sbjct: 92 LLASGADVNAKDADGDTPLHLAALNGNP----------PEGNIEVAKLLLEAGADLDVNN 141
Query: 90 AKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ-ATTTGVA 148
+D GNTPLH A A + L L E GA ++ N+ G+T + A G
Sbjct: 142 LRDEDGNTPLHWAALNGDA-------DIVELLL-EAGADPNSRNSYGVTALDPAAKNGRI 193
Query: 149 DLILRTLTKIN 159
+L+ L K
Sbjct: 194 ELVKLLLDKGL 204
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 37.0 bits (86), Expect = 0.004
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
KLL+ GA+VNA D G TPL + + +I+ L +NGA+++ N+ G
Sbjct: 90 KLLLEYGANVNAPDNNGITPLLYAISKKSNSY------SIVEYLLDNGANVNIKNSDGEN 143
Query: 139 PIQATTTG------VADLILRTLTKINLKC 162
+ + L++ IN K
Sbjct: 144 LLHLYLESNKIDLKILKLLIDKGVDINAKN 173
Score = 32.7 bits (75), Expect = 0.099
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
L+ G +N KD G TPLH A Y + L LDL GA+ + VN G T
Sbjct: 176 NYLLSYGVPINIKDVYGFTPLH-YAVYNNNPEFVKYL----LDL---GANPNLVNKYGDT 227
Query: 139 PI 140
P+
Sbjct: 228 PL 229
Score = 32.7 bits (75), Expect = 0.12
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYE 106
K L+ GA+ N + G+TPLHI
Sbjct: 209 KYLLDLGANPNLVNKYGDTPLHIAILNN 236
Score = 27.3 bits (61), Expect = 5.1
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATY---ERAISDFQTLHTIILD-------LTENGAH 128
+ L+ GA+VN K+ G LH+ + I + ++ L G
Sbjct: 125 EYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVP 184
Query: 129 MDTVNNKGLTPIQ 141
++ + G TP+
Sbjct: 185 INIKDVYGFTPLH 197
Score = 27.3 bits (61), Expect = 5.8
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
K+L+ GAD+N+ +TPLH ++ + ++D + I+ L E GA+++ +N G+T
Sbjct: 52 KILLDNGADINSSTKNNSTPLHYLSNIKYNLTD---VKEIVKLLLEYGANVNAPDNNGIT 108
Query: 139 PIQATTT 145
P+ +
Sbjct: 109 PLLYAIS 115
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 35.4 bits (81), Expect = 0.016
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
+ LI GADVNA D TPLH +T +R I++ L E GA+++ + T
Sbjct: 325 RTLIMLGADVNAADRLYITPLHQASTLDRN-------KDIVITLLELGANVNARDYCDKT 377
Query: 139 PIQATTTGVADLILRTL 155
PI +I+ TL
Sbjct: 378 PIHYAAVRNNVVIINTL 394
Score = 32.7 bits (74), Expect = 0.12
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 8/67 (11%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
KLL R GADVNAK+ +G TPL+++A + D + + T+I+ GA ++ + +T
Sbjct: 292 KLLER-GADVNAKNIKGETPLYLMA---KNGYDTENIRTLIM----LGADVNAADRLYIT 343
Query: 139 PIQATTT 145
P+ +T
Sbjct: 344 PLHQAST 350
Score = 29.6 bits (66), Expect = 1.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATY 105
++L+ GADVNAKD TP+H A
Sbjct: 162 EMLLEGGADVNAKDIYCITPIHYAAER 188
Score = 28.1 bits (62), Expect = 3.8
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ K LI GA+VN+K+ +TPLH + +I L +NGA ++ +N +
Sbjct: 424 SVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLD-------VIEMLLDNGADVNAINIQN 476
Query: 137 LTP--IQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPH 181
P I G+ +++L ++ + K + N +++ ++ H
Sbjct: 477 QYPLLIALEYHGIVNILLHYGAELRDSRVLHKSLNDNMFSFRYIIAH 523
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 34.1 bits (78), Expect = 0.017
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 79 KLLIRCGADVNAKDYQ-GNTPLHIIA 103
KLL+ GAD+N K+ GNTPLHI
Sbjct: 75 KLLMEWGADINGKERVFGNTPLHIAV 100
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 34.9 bits (80), Expect = 0.022
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 41/145 (28%)
Query: 22 ISEEEEYRIYKLVFSLN-KLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKL 80
+E ++ R+ +L+ S +++ + N S LH V H N +
Sbjct: 175 ATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVK--------HYNK-------PIVHI 219
Query: 81 LIRCGADVNAKDYQGNTPLHIIATY-------------------ERAISDFQTLHTIILD 121
L+ GA +A+D GNTPLHI Y + I LH+ I
Sbjct: 220 LLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKS 279
Query: 122 ------LTENGAHMDTVNNKGLTPI 140
L E GA ++++N+ LTP+
Sbjct: 280 ERKLKLLLEYGADINSLNSYKLTPL 304
Score = 30.6 bits (69), Expect = 0.52
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 78 TKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGL 137
T+LL+ GA+VN D N+PLH A+ + I+ L ENGA D + G
Sbjct: 184 TELLLSYGANVNIPDKTNNSPLH------HAVKHYN--KPIVHILLENGASTDARDKCGN 235
Query: 138 TPIQATTTGVADL-ILRTL 155
TP+ + D IL+ L
Sbjct: 236 TPLHISVGYCKDYDILKLL 254
Score = 30.2 bits (68), Expect = 0.62
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 75 AATTKLLIRCGADVNAKD-YQGNTPLHIIAT 104
A TKLL+ GAD+N KD ++GNT LH
Sbjct: 147 AEITKLLLSYGADINMKDRHKGNTALHYATE 177
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 29.9 bits (68), Expect = 0.14
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 70 CKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYER 107
K L+ G D+N D GNT LHI A
Sbjct: 9 AISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGN 46
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 29.2 bits (66), Expect = 0.19
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 80 LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
LL D+NA D GNTPLH +A A+ Q L + G ++ ++ GLT
Sbjct: 1 LLEHGPIDLNATDGNGNTPLH-LAAKYGALELVQWLL-------KPGVDLNLRDSDGLTA 52
Query: 140 IQ 141
+
Sbjct: 53 LD 54
Score = 25.8 bits (57), Expect = 3.5
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 70 CKFPCAATTKLLIRCGADVNAKDYQGNTPLHI 101
K+ + L++ G D+N +D G T L +
Sbjct: 24 AKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 31.6 bits (71), Expect = 0.26
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 61 VDTFHTNDVCKF-----PCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTL 115
VD F N + + P A+T +++ G + D+ GNTPLHI+ + +T+
Sbjct: 169 VDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCS--------KTV 220
Query: 116 HTI-ILDLTENGAHMDTVNNKGLTPIQ--ATTTGVADLILRTLTKINL 160
+ I++L ++ N G +P+ T A LI + L+ N+
Sbjct: 221 KNVDIINLLLPSTDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNV 268
>gnl|CDD|129946 TIGR00868, hCaCC, calcium-activated chloride channel protein 1.
found a row in 1A13.INFO that was not parsed out AC
found a row in 1A13.INFO that was not parsed out EC
found a row in 1A13.INFO that was not parsed out GA
found a row in 1A13.INFO that was not parsed out SO
found a row in 1A13.INFO that was not parsed out RH
found a row in 1A13.INFO that was not parsed out EN
found a row in 1A13.INFO that was not parsed out GS
found a row in 1A13.INFO that was not parsed out AL
found a row in 1A13.INFO that was not parsed out The
Epithelial Chloride Channel (E-ClC) Family (TC 1.A.13)
found a row in 1A13.INFO that was not parsed out found a
row in 1A13.INFO that was not parsed out Mammals have
multiple isoforms of epithelial chloride channel
proteins. The first member of this family to be
characterized was a respiratory epithelium, Ca found a
row in 1A13.INFO that was not parsed out 2+-regulated,
chloride channel protein isolated from bovine tracheal
apical membranes. It was biochemically characterized as
a 140 kDa complex. The purified found a row in 1A13.INFO
that was not parsed out complex when reconstituted in a
planar lipid bilayer behaved as an anion-selective
channel. It was regulated by Ca 2+ via a calmodulin
kinase II-dependent found a row in 1A13.INFO that was
not parsed out mechanism. When the cRNA was injected
into Xenopus oocytes, an outward rectifying,
DIDS-sensitive, anion conductance was measured. A
related gene, found a row in 1A13.INFO that was not
parsed out Lu-ECAM, was cloned from the bovine aortic
endothelial cell line, BAEC. It is expressed in the lung
and spleen but not in the trachea. Homologues are found
in found a row in 1A13.INFO that was not parsed out
several mammals, and at least three
paralogues(hCaCC-1-3) are present in humans, each with
different tissue distributions. found a row in 1A13.INFO
that was not parsed out [Transport and binding proteins,
Anions].
Length = 863
Score = 31.4 bits (71), Expect = 0.31
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 88 VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGL 137
V AK QG P ++ A+ + + HT+ L+L +NGA DTV N G+
Sbjct: 613 VYAKISQGFLP--VLGANVTALIESENGHTVTLELLDNGAGADTVKNDGI 660
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 30.6 bits (69), Expect = 0.45
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 28/91 (30%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIAT------------YERAISDFQ-------TLHTII 119
K+LI G+ + +D G LH+ + +S L++ I
Sbjct: 107 KILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYI 166
Query: 120 LD---------LTENGAHMDTVNNKGLTPIQ 141
L LT G ++ N G
Sbjct: 167 LFHSDKKIFDFLTSLGIDINETNKSGYNCYD 197
Score = 29.8 bits (67), Expect = 0.81
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 12/129 (9%)
Query: 57 YETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGN-TPLHIIATYERAISDFQTL 115
YETP+ + D K LI GADVN K N + LH ++ + +
Sbjct: 51 YETPIFSCLEKDKVN---VEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEP---- 103
Query: 116 HTIILDLTENGAHMDTVNNKGLTPIQA--TTTGVADLILRTLTKINLKCLAAKVITQNNI 173
I+ L ++G+ + + G + V +++ L + L K NNI
Sbjct: 104 -EILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL-NKDFDNNNI 161
Query: 174 TYKGLVPHD 182
Y ++ H
Sbjct: 162 LYSYILFHS 170
>gnl|CDD|237828 PRK14833, PRK14833, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 233
Score = 30.2 bits (68), Expect = 0.59
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
Query: 107 RAISDFQT----LHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLILRTLTKI--NL 160
+AI D + L IL L E DT + KG T + A G D I R K+ +
Sbjct: 95 KAIGDLEGFSKELRDTILQLEE-----DTRSFKGFTQVLALNYGSKDEISRAFKKLLESP 149
Query: 161 KCLAAKV-ITQNNI 173
++ + I
Sbjct: 150 PSHIGELESLEEEI 163
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 30.7 bits (69), Expect = 0.60
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 79 KLLIRCGADVNAKDYQGNTPLH-------IIATYERAISDFQTLHTIILDLTENGAHMDT 131
KLL G D+N D GNT LH ++ + + L +I L GA +
Sbjct: 336 KLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLD-VIQCLISLGADITA 394
Query: 132 VNNKGLTPI 140
VN G TP+
Sbjct: 395 VNCLGYTPL 403
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 30.4 bits (69), Expect = 0.61
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDT------ 131
LL AD+ D GNT LH++ ++++ L + + +
Sbjct: 192 ALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEV 251
Query: 132 -VNNKGLTPIQ 141
+N++GLTP++
Sbjct: 252 ILNHQGLTPLK 262
>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional.
Length = 166
Score = 28.2 bits (63), Expect = 1.9
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
Query: 79 KLLIRCGADVNAKDYQ-GNTPLHIIAT---YERA 108
+LL+ GAD+NA++ GNT LHI A+ YE A
Sbjct: 77 ELLVNMGADINARELGTGNTLLHIAASTKNYELA 110
>gnl|CDD|215586 PLN03116, PLN03116, ferredoxin--NADP+ reductase; Provisional.
Length = 307
Score = 28.5 bits (64), Expect = 2.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 119 ILDLTENGAHMDTVNNKGLTP-IQATTTGVAD 149
I L +NGAH+ KG+ P IQ T VA+
Sbjct: 252 IFKLLDNGAHIYFCGLKGMMPGIQDTLKRVAE 283
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 27.8 bits (62), Expect = 4.1
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA--HMDTVNNKG 136
KLLI GADVN K Y TPL + R I+ + + L L + GA ++ T N G
Sbjct: 54 KLLIDNGADVNYKGYI-ETPLCAVLR-NREITSNKIKKIVKL-LLKFGADINLKTFN--G 108
Query: 137 LTPI 140
++PI
Sbjct: 109 VSPI 112
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities. Repeats 13-24 are
especially active, with known sites of interaction for
the Na/K ATPase, Cl/HCO(3) anion exchanger,
voltage-gated sodium channel, clathrin heavy chain and
L1 family cell adhesion molecules. The ANK repeats are
found to form a contiguous spiral stack such that ion
transporters like the anion exchanger associate in a
large central cavity formed by the ANK repeat spiral,
while clathrin and cell adhesion molecules associate
with specific regions outside this cavity.
Length = 33
Score = 24.8 bits (55), Expect = 5.0
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 79 KLLIRCGADVNAKD 92
KLL+ GADVNA+D
Sbjct: 19 KLLLEAGADVNARD 32
>gnl|CDD|184168 PRK13590, PRK13590, putative bifunctional OHCU
decarboxylase/allantoate amidohydrolase; Provisional.
Length = 591
Score = 27.8 bits (62), Expect = 5.0
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 13/64 (20%)
Query: 74 CAATTKLLIR-CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV 132
CA +R CG D D GN ++ Y+ + + L T G+H DTV
Sbjct: 216 CAQQISHWMRDCGFDEVHIDAVGN----VVGRYKGSTPQAKRLLT--------GSHYDTV 263
Query: 133 NNKG 136
N G
Sbjct: 264 RNGG 267
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 27.5 bits (61), Expect = 6.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 81 LIRCGADVNAKDYQGNTPLHIIAT 104
L++ D + D +G TPLHI A+
Sbjct: 544 LLKAKLDPDIGDSKGRTPLHIAAS 567
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.384
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,473,816
Number of extensions: 835455
Number of successful extensions: 689
Number of sequences better than 10.0: 1
Number of HSP's gapped: 658
Number of HSP's successfully gapped: 71
Length of query: 199
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 107
Effective length of database: 6,857,034
Effective search space: 733702638
Effective search space used: 733702638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)