RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8420
(199 letters)
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 58.9 bits (143), Expect = 3e-11
Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 75 AATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNN 134
K+ + GAD+ A + + + + + + L +++G + +
Sbjct: 94 TELCKIFLEKGADITALYKPYKIVVF-KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK 152
Query: 135 KGLTPIQ-ATTTG---VADLILRTLTKINLK 161
GLT ++ ++ + K NLK
Sbjct: 153 WGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183
Score = 52.4 bits (126), Expect = 6e-09
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 76 ATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
+ LI GAD+ ++ +G T + D + E GA + +
Sbjct: 56 KISMFLINKGADIKSRTKEGTTLFFPLFQGGGN--DITGTTELCKIFLEKGADITALYKP 113
Query: 136 GLTP 139
Sbjct: 114 YKIV 117
Score = 34.6 bits (80), Expect = 0.008
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
L G + + + L+ + ++ + + I + L GA + + +G T
Sbjct: 23 LELFEKGYEDK-ESVLKSNILYDVLRN----NNDEARYKISMFLINKGADIKSRTKEGTT 77
Query: 139 P 139
Sbjct: 78 L 78
Score = 29.3 bits (66), Expect = 0.58
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 77 TTKLLIRCGADVNAKD 92
K++ N K+
Sbjct: 169 ALKMMEDYIKKYNLKE 184
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 56.3 bits (136), Expect = 4e-10
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 77 TTKLLIRCG---ADVNAKDYQGNTPLHIIATYERAISDFQTLHT--------IILDLTEN 125
L+ A + A D GNT LH + + L + L
Sbjct: 151 VVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPT 210
Query: 126 GAHMDTVNNKGLTP 139
+ N++GLTP
Sbjct: 211 VQLEEISNHQGLTP 224
Score = 40.9 bits (96), Expect = 1e-04
Identities = 11/92 (11%), Positives = 22/92 (23%), Gaps = 19/92 (20%)
Query: 51 LHLCVNYETPVDTFHTNDVCKFPCAA------TTKLLIRCGADVNAKDYQGNTPLHIIAT 104
LH V ++ + L ++QG TPL + A
Sbjct: 176 LHALVMIAD-----NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK 230
Query: 105 YERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ I + + ++
Sbjct: 231 EGKI--------EIFRHILQREFSGAAAHHHH 254
Score = 39.8 bits (93), Expect = 2e-04
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 18/76 (23%)
Query: 77 TTKLLIRCGADVNAKD-------------YQGNTPLHIIATYERAISDFQTLHTIILDLT 123
KLL+ GADV+ + Y G PL +A + L L+
Sbjct: 105 CVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLS-LAACTKQWDVVTYL----LENP 159
Query: 124 ENGAHMDTVNNKGLTP 139
A ++ ++ G T
Sbjct: 160 HQPASLEATDSLGNTV 175
Score = 30.5 bits (69), Expect = 0.29
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 8/65 (12%)
Query: 75 AATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNN 134
+ A + YQG++ LHI + L ENGA +
Sbjct: 70 KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS--------LQCVKLLVENGADVHLRAC 121
Query: 135 KGLTP 139
Sbjct: 122 GRFFQ 126
Score = 26.7 bits (59), Expect = 4.9
Identities = 3/21 (14%), Positives = 4/21 (19%)
Query: 83 RCGADVNAKDYQGNTPLHIIA 103
+ G T L
Sbjct: 31 YLTDSAYTEGSTGKTCLMKAV 51
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 54.4 bits (132), Expect = 2e-09
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
KLLI+ DVN KDY G TPLH A + + + L EN M+ VN G
Sbjct: 214 VLKLLIQARYDVNIKDYDGWTPLHAAAHWGK-------EEACRI-LVENLCDMEAVNKVG 265
Query: 137 LTPIQATTTGVADLILRTLTKINLK 161
T + + K NL
Sbjct: 266 QTAFDVADEDILGYLEELQKKQNLL 290
Score = 50.6 bits (122), Expect = 5e-08
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
K L+ GA++N D +G PLH A+ L L GAH+ VN++G
Sbjct: 88 MVKFLVENGANINQPDNEGWIPLHAAASCGY-------LDIAEY-LISQGAHVGAVNSEG 139
Query: 137 LTP 139
TP
Sbjct: 140 DTP 142
Score = 46.3 bits (111), Expect = 1e-06
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 10/67 (14%)
Query: 74 CAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTV 132
+ L + G T LH+ A +T +L L + ++
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKG---------YTEVLKLLIQARYDVNIK 228
Query: 133 NNKGLTP 139
+ G TP
Sbjct: 229 DYDGWTP 235
Score = 45.6 bits (109), Expect = 3e-06
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ LI GA V A + +G+TPL IA E + ++ G ++ +
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPLD-IAEEE------AMEELLQNEVNRQGVDIEAARKEE 173
Query: 137 LTP 139
Sbjct: 174 ERI 176
Score = 44.8 bits (107), Expect = 4e-06
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
L+ GAD+N + G T LH + + + L ENGA+++ +N+G
Sbjct: 55 EVLRLLERGADINYANVDGLTALHQACIDDN-------VDMVKF-LVENGANINQPDNEG 106
Query: 137 LTP 139
P
Sbjct: 107 WIP 109
Score = 37.9 bits (89), Expect = 0.001
Identities = 10/63 (15%), Positives = 16/63 (25%), Gaps = 9/63 (14%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ + K + +L L E GA ++ N G
Sbjct: 23 DLEPPVVKRKKTKVKF-DDGAVFLAACSSGD--------TEEVLRLLERGADINYANVDG 73
Query: 137 LTP 139
LT
Sbjct: 74 LTA 76
Score = 30.5 bits (70), Expect = 0.31
Identities = 5/59 (8%), Positives = 13/59 (22%), Gaps = 8/59 (13%)
Query: 88 VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTG 146
+ D + + T + + G + A ++G
Sbjct: 1 MKMADAKQKRNEQLKRWIGS--------ETDLEPPVVKRKKTKVKFDDGAVFLAACSSG 51
Score = 28.2 bits (64), Expect = 1.9
Identities = 7/65 (10%), Positives = 14/65 (21%), Gaps = 18/65 (27%)
Query: 77 TTKLLI-RCGADVNAKDYQGNTPLHI-IATYERAISDFQTLHTIILDLTENGAHMDTVNN 134
+ + R G D+ A + + + L +
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQW----------------LNSGHINDVRHAK 197
Query: 135 KGLTP 139
G T
Sbjct: 198 SGGTA 202
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 52.8 bits (128), Expect = 4e-09
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 74 CAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN 133
+ L++ AD+NA + GN PLH + + + DL NGA + N
Sbjct: 84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ--------DQVAEDLVANGALVSICN 135
Query: 134 NKGLTP 139
G P
Sbjct: 136 KYGEMP 141
Score = 47.8 bits (115), Expect = 2e-07
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
++LI GA +N + +TPLH+ A++ I+ L + A ++ VN G
Sbjct: 54 VVEMLIMRGARINVMNRGDDTPLHLAASHGH--------RDIVQKLLQYKADINAVNEHG 105
Query: 137 LTP 139
P
Sbjct: 106 NVP 108
Score = 43.6 bits (104), Expect = 7e-06
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
+ L+ GA V+ + G P+ R + + G +++ + K
Sbjct: 120 VAEDLVANGALVSICNKYGEMPVDKAKAPLRE--------LLRERAEKMGQNLNRIPYK 170
Score = 41.3 bits (98), Expect = 5e-05
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 77 TTKLLIRCGA-DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
+L + D+N D G +PLH R + + L GA ++ +N
Sbjct: 20 AVRLWLDNTENDLNQGDDHGFSPLHWACREGR-------SAVVEM-LIMRGARINVMNRG 71
Query: 136 GLTP 139
TP
Sbjct: 72 DDTP 75
Score = 27.8 bits (63), Expect = 2.0
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 74 CAATTKLLIRCGADVNAKDYQGNT 97
+ + G ++N Y+
Sbjct: 150 RELLRERAEKMGQNLNRIPYKDTF 173
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 51.2 bits (124), Expect = 5e-09
Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
+ L+ GAD+NA D TPL A YE H + L GA
Sbjct: 55 ILEFLLLKGADINAPDKHHITPLL-SAVYEG--------HVSCVKLLLSKGADKTVKGPD 105
Query: 136 GLTP-IQATTTGVADLI 151
GLT + L+
Sbjct: 106 GLTAFEATDNQAIKALL 122
Score = 46.6 bits (112), Expect = 2e-07
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNKGL 137
K + G DVN G PLH A I+ L GA ++ + +
Sbjct: 24 KDYVAKGEDVNRTLEGGRKPLHYAADCG---------QLEILEFLLLKGADINAPDKHHI 74
Query: 138 TP 139
TP
Sbjct: 75 TP 76
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 51.3 bits (124), Expect = 6e-09
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+LL++ A VN YQ ++PLH A I+ L GA + VN G
Sbjct: 58 VVELLLQHKALVNTTGYQNDSPLHDAAKNGH--------VDIVKLLLSYGASRNAVNIFG 109
Query: 137 LTP 139
L P
Sbjct: 110 LRP 112
Score = 48.2 bits (116), Expect = 9e-08
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNK 135
+ + L++ G+D N KD+ G TPLH + H ++ L ++ A ++T +
Sbjct: 25 SVEYLLQNGSDPNVKDHAGWTPLHEACNHG---------HLKVVELLLQHKALVNTTGYQ 75
Query: 136 GLTP 139
+P
Sbjct: 76 NDSP 79
Score = 42.4 bits (101), Expect = 1e-05
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
KLL+ GA NA + G P+
Sbjct: 91 IVKLLLSYGASRNAVNIFGLRPVDYTDDE 119
Score = 35.9 bits (84), Expect = 0.002
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 85 GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
G D +++G T LHI + + L +NG+ + ++ G TP
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGD--------IPSVEYLLQNGSDPNVKDHAGWTP 46
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 53.2 bits (129), Expect = 7e-09
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 10/63 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
LL+ GAD AK+ +G P+ ++ L E +
Sbjct: 181 LACLLMDFGADTQAKNAEGKRPVELVPPES---------PLAQL-FLEREGPPSLMQLCR 230
Query: 137 LTP 139
L
Sbjct: 231 LRI 233
Score = 47.4 bits (114), Expect = 6e-07
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ + LI G VN +PLH + + L ++GA ++ V
Sbjct: 18 SLRNLISQGWAVNIITADHVSPLHEACLGGH--------LSCVKILLKHGAQVNGVTADW 69
Query: 137 LTP 139
TP
Sbjct: 70 HTP 72
Score = 44.7 bits (107), Expect = 5e-06
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 24/90 (26%)
Query: 74 CAATTKLLIRCGADVNAKDYQGNTPLHIIATYERA------IS---------DFQT-LHT 117
LI G +++ K TPL++ ++ + + LH
Sbjct: 113 HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHA 172
Query: 118 --------IILDLTENGAHMDTVNNKGLTP 139
+ L + GA N +G P
Sbjct: 173 VARTASEELACLLMDFGADTQAKNAEGKRP 202
Score = 42.8 bits (102), Expect = 2e-05
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
LL++ GA V + +P+H A H ++ L G ++D +
Sbjct: 84 CVNLLLQHGASVQPESD-LASPIHEAARRG---------HVECVNSLIAYGGNIDHKISH 133
Query: 136 GLTP 139
TP
Sbjct: 134 LGTP 137
Score = 39.3 bits (93), Expect = 3e-04
Identities = 1/29 (3%), Positives = 4/29 (13%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
+L + +
Sbjct: 212 LAQLFLEREGPPSLMQLCRLRIRKCFGIQ 240
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 52.5 bits (126), Expect = 1e-08
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 79 KLLIRCG---ADVNAKDYQGNTPLHI--------IATYERAISDFQTLHTIILDLTENGA 127
K L++ AD++A+D GNT LH + + S + + + L
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK 224
Query: 128 HMDTVNNKGLTP 139
+ N KGLTP
Sbjct: 225 LEEITNRKGLTP 236
Score = 38.2 bits (89), Expect = 9e-04
Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 27/82 (32%)
Query: 76 ATTKLLIRCGADVNAKD--------------YQGNTPLHIIATYERAISDFQTLHT-IIL 120
LL+ GADV A Y G PL + A T I+
Sbjct: 115 TLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA---------CTNQLAIVK 165
Query: 121 DLTENG---AHMDTVNNKGLTP 139
L +N A + ++ G T
Sbjct: 166 FLLQNSWQPADISARDSVGNTV 187
Score = 34.0 bits (78), Expect = 0.023
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 51 LHLCVNY--ETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATY 105
LH V T +T + L + +G TPL + A+
Sbjct: 188 LHALVEVADNTVDNTKFVTSMYN-EILILGAKLHPTLKLEEITNRKGLTPLALAASS 243
Score = 32.1 bits (73), Expect = 0.10
Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 19/74 (25%)
Query: 79 KLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTV---- 132
+ + D KD G T L A+ + I L + D++
Sbjct: 37 QRSKKRLTDSEFKDPETGKTCLLK------AMLNLHNGQNDTIALLLDVARKTDSLKQFV 90
Query: 133 -------NNKGLTP 139
KG T
Sbjct: 91 NASYTDSYYKGQTA 104
Score = 31.3 bits (71), Expect = 0.17
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 19/74 (25%)
Query: 77 TTKLLIRCGADVNA-----------KDYQGNTPLHIIATYERAISDFQTLHTIILDLTEN 125
T LL+ ++ Y+G T LHI T++ L EN
Sbjct: 72 TIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN--------MTLVTLLVEN 123
Query: 126 GAHMDTVNNKGLTP 139
GA + N
Sbjct: 124 GADVQAAANGDFFK 137
Score = 30.9 bits (70), Expect = 0.22
Identities = 4/56 (7%), Positives = 14/56 (25%), Gaps = 2/56 (3%)
Query: 85 GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK-GLTP 139
A + + + ++L + + + + + G T
Sbjct: 3 SAGEKPPRLYDRRSIFDAV-AQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTC 57
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 52.1 bits (126), Expect = 2e-08
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
++L + GA +NA D G T LH A L G+ ++ +G
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGH--------LQTCRLLLSYGSDPSIISLQG 313
Query: 137 LTPIQATTTGVADLIL 152
T Q V ++
Sbjct: 314 FTAAQMGNEAVQQILS 329
Score = 50.2 bits (121), Expect = 8e-08
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+LL+R GA+VN K+ TPLH+ A + ++ L ++GA M+ +++ G
Sbjct: 229 VAELLLRKGANVNEKNKDFMTPLHVAAERAH--------NDVMEVLHKHGAKMNALDSLG 280
Query: 137 LTP 139
T
Sbjct: 281 QTA 283
Score = 48.6 bits (117), Expect = 3e-07
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
T+LL++ GA VNA D TPLH A+ R + L +GA VN G
Sbjct: 106 VTELLLKHGACVNAMDLWQFTPLHEAASKNR--------VEVCSLLLSHGADPTLVNCHG 157
Query: 137 LTPI 140
+ +
Sbjct: 158 KSAV 161
Score = 48.3 bits (116), Expect = 4e-07
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
LL + +A D + +TPLH+ A Y R I+ L ++GA + + G
Sbjct: 40 LMALLTPLNVNCHASDGRKSTPLHLAAGYNR--------VRIVQLLLQHGADVHAKDKGG 91
Query: 137 LTP 139
L P
Sbjct: 92 LVP 94
Score = 47.5 bits (114), Expect = 7e-07
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
+LL++ GADV+AKD G PLH +Y H + + L ++GA ++ ++
Sbjct: 73 IVQLLLQHGADVHAKDKGGLVPLHNACSYG---------HYEVTELLLKHGACVNAMDLW 123
Query: 136 GLTP 139
TP
Sbjct: 124 QFTP 127
Score = 44.8 bits (107), Expect = 6e-06
Identities = 10/76 (13%), Positives = 16/76 (21%), Gaps = 13/76 (17%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERA------ISDFQTLH-------TIILDLT 123
LL+ GAD + G + + + T E L +
Sbjct: 139 VCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL 198
Query: 124 ENGAHMDTVNNKGLTP 139
T
Sbjct: 199 ALEIINFKQPQSHETA 214
Score = 42.9 bits (102), Expect = 2e-05
Identities = 9/63 (14%), Positives = 14/63 (22%), Gaps = 7/63 (11%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ L A L A + L LT + + +
Sbjct: 6 SALDLADPSAKAVLTGEYKKDELLEAARS------GNEEKLMAL-LTPLNVNCHASDGRK 58
Query: 137 LTP 139
TP
Sbjct: 59 STP 61
Score = 41.7 bits (99), Expect = 5e-05
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 5/62 (8%)
Query: 78 TKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGL 137
K + + T LH S + L GA+++ N +
Sbjct: 194 VKKTLALEIINFKQPQSHETALHCA-----VASLHPKRKQVAELLLRKGANVNEKNKDFM 248
Query: 138 TP 139
TP
Sbjct: 249 TP 250
Score = 30.2 bits (69), Expect = 0.45
Identities = 2/31 (6%), Positives = 8/31 (25%), Gaps = 2/31 (6%)
Query: 75 AATTKLLIRCGADVNAKDYQGNTPLHIIATY 105
+ ++ + D + L +
Sbjct: 321 NEAVQQILSESTPMRTSD--VDYRLLEASKA 349
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 50.1 bits (121), Expect = 2e-08
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
++L++ GADVNAKD T LH + + L L + GA + T +
Sbjct: 82 IVEVLLKHGADVNAKDMLKMTALHWATEHNH-------QEVVEL-LIKYGADVHTQSKFC 133
Query: 137 LTP 139
T
Sbjct: 134 KTA 136
Score = 47.4 bits (114), Expect = 2e-07
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
TT++L+R G +A+ TPLH+ A+ I+ L ++GA ++ +
Sbjct: 49 TTEVLLRAGVSRDARTKVDRTPLHMAASEGH--------ANIVEVLLKHGADVNAKDMLK 100
Query: 137 LTP 139
+T
Sbjct: 101 MTA 103
Score = 42.0 bits (100), Expect = 2e-05
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
+LLI+ GADV+ + T I
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDN 143
Score = 40.1 bits (95), Expect = 8e-05
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
++L+ GA D+ G +PLH+ A Y T + L G D
Sbjct: 17 EVRILMANGAPFT-TDWLGTSPLHLAAQYGH-------FSTTEV-LLRAGVSRDARTKVD 67
Query: 137 LTP 139
TP
Sbjct: 68 RTP 70
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 50.1 bits (121), Expect = 3e-08
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+LL++ GA VN D TPLH A + L L ++GA N G
Sbjct: 90 VAELLVKHGAVVNVADLWKFTPLHEAAAKGK-------YEICKL-LLQHGADPTKKNRDG 141
Query: 137 LTP 139
TP
Sbjct: 142 NTP 144
Score = 47.0 bits (113), Expect = 4e-07
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ L++ GADV+AKD G PLH +Y L L ++GA ++ +
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGH-------YEVAEL-LVKHGAVVNVADLWK 108
Query: 137 LTP 139
TP
Sbjct: 109 FTP 111
Score = 44.7 bits (107), Expect = 2e-06
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIA 103
KLL++ GAD K+ GNTPL ++
Sbjct: 123 ICKLLLQHGADPTKKNRDGNTPLDLVK 149
Score = 40.1 bits (95), Expect = 1e-04
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 77 TTKLLI-RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
T K L + + + +TPLH A Y R + + L ++GA + +
Sbjct: 23 TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR-------VSVVEY-LLQHGADVHAKDKG 74
Query: 136 GLTP 139
GL P
Sbjct: 75 GLVP 78
Score = 30.4 bits (70), Expect = 0.23
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 10/55 (18%)
Query: 85 GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
GA N++ + L A + T+ T + + + TP
Sbjct: 1 GAMGNSE---ADRQLLEAAKAGD-------VETVKKLCTVQSVNCRDIEGRQSTP 45
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 50.1 bits (121), Expect = 3e-08
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 10/64 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
+ L+ GAD+ + G TP+ + + + + + + N
Sbjct: 117 CVEALLARGADLTTEADSGYTPMDLAVALG---------YRKVQQVIENHILKLFQSNLV 167
Query: 136 GLTP 139
P
Sbjct: 168 PADP 171
Score = 49.3 bits (119), Expect = 6e-08
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNK 135
LL+ D+N D+ G TPL A H + L GA + T +
Sbjct: 84 IVGLLLERDVDINIYDWNGGTPLL-YAVRGN--------HVKCVEALLARGADLTTEADS 134
Query: 136 GLTP 139
G TP
Sbjct: 135 GYTP 138
Score = 45.5 bits (109), Expect = 1e-06
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNK 135
T + L+ GAD + + + L + +T +T I+ L E ++ +
Sbjct: 51 TVRFLLEWGADPHILAKERESALSLASTGG---------YTDIVGLLLERDVDINIYDWN 101
Query: 136 GLTP 139
G TP
Sbjct: 102 GGTP 105
Score = 43.6 bits (104), Expect = 7e-06
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 11/65 (16%)
Query: 77 TTKLLIRCGAD-VNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNN 134
K +R G + VN D +G TPL A+ + L E GA +
Sbjct: 17 QLKEHLRKGDNLVNKPDERGFTPLI-WASAFG--------EIETVRFLLEWGADPHILAK 67
Query: 135 KGLTP 139
+ +
Sbjct: 68 ERESA 72
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 51.0 bits (123), Expect = 3e-08
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+LL++ GAD A+ Y G TPL L L +GA
Sbjct: 207 VLELLLKAGADPTARMYGGRTPLGSALLRPN-------PILARL-LRAHGAPEPEDGGDK 258
Query: 137 LTPIQ 141
L+P
Sbjct: 259 LSPCS 263
Score = 46.4 bits (111), Expect = 1e-06
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 77 TTKLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
+LL GAD+N + G TPLH+ + +++ L + GA
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA--------ASVLELLLKAGADPTARMYG 224
Query: 136 GLTP 139
G TP
Sbjct: 225 GRTP 228
Score = 44.5 bits (106), Expect = 6e-06
Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 8/70 (11%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
T + L GA V + G+T LH+ HT L + +
Sbjct: 60 TVEKLYAAGAGVLVAERGGHTALHLACRVRA--------HTCACVLLQPRPSHPRDASDT 111
Query: 137 LTPIQATTTG 146
T
Sbjct: 112 YLTQSQDCTP 121
Score = 42.5 bits (101), Expect = 3e-05
Identities = 6/32 (18%), Positives = 8/32 (25%)
Query: 70 CKFPCAATTKLLIRCGADVNAKDYQGNTPLHI 101
P +LL GA +P
Sbjct: 233 LLRPNPILARLLRAHGAPEPEDGGDKLSPCSS 264
Score = 39.8 bits (94), Expect = 2e-04
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 11/66 (16%)
Query: 77 TTKLLIRCGAD---VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN 133
L+ A ++ ++ G T LH+ A + + L GA +
Sbjct: 24 FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE--------ASTVEKLYAAGAGVLVAE 75
Query: 134 NKGLTP 139
G T
Sbjct: 76 RGGHTA 81
Score = 28.3 bits (64), Expect = 1.7
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 11/55 (20%)
Query: 88 VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN---NKGLTP 139
G+T LH+ ++ + L A + ++ + G T
Sbjct: 2 FGYVTEDGDTALHLAVIHQH--------EPFLDFLLGFSAGHEYLDLQNDLGQTA 48
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 48.9 bits (118), Expect = 3e-08
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
KLL+ GADVNA+ GNTP H+ + L L GA ++ +
Sbjct: 57 IVKLLLAKGADVNARSKDGNTPEHLAKKNGH-------HEIVKL-LDAKGADVNARSWGS 108
Query: 137 LTP 139
Sbjct: 109 SHH 111
Score = 46.2 bits (111), Expect = 3e-07
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
K L+ GADVNA+ GNTPLH+ A I+ L GA ++ + G
Sbjct: 24 EVKKLLSKGADVNARSKDGNTPLHLAAKNGH--------AEIVKLLLAKGADVNARSKDG 75
Query: 137 LTP 139
TP
Sbjct: 76 NTP 78
Score = 42.8 bits (102), Expect = 6e-06
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLH 100
KLL GADVNA+ + + H
Sbjct: 90 IVKLLDAKGADVNARSWGSSHHHH 113
Score = 32.3 bits (75), Expect = 0.028
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 85 GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGLTP 139
G +KD GNTPLH A H + L GA ++ + G TP
Sbjct: 1 GHMWGSKD--GNTPLHNAAKNG---------HAEEVKKLLSKGADVNARSKDGNTP 45
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 50.9 bits (123), Expect = 4e-08
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
++L+ D++A + G++PLHI A R ++L + + N +G
Sbjct: 159 IAEILLAAKCDLHAVNIHGDSPLHIAARENR-------YDCVVL-FLSRDSDVTLKNKEG 210
Query: 137 LTP 139
TP
Sbjct: 211 ETP 213
Score = 49.3 bits (119), Expect = 1e-07
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+L++ GA+++ TPL A L + L + GA +D + +G
Sbjct: 26 ICHMLVQAGANIDTCSEDQRTPLMEAAENNH-------LEAVKY-LIKAGALVDPKDAEG 77
Query: 137 LTP 139
T
Sbjct: 78 STC 80
Score = 46.6 bits (112), Expect = 1e-06
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
KLL+ G+D+N +D + N LH A + + L + VN G
Sbjct: 126 LVKLLLSKGSDINIRDNEENICLHWAAFSGC-------VDIAEI-LLAAKCDLHAVNIHG 177
Query: 137 LTP 139
+P
Sbjct: 178 DSP 180
Score = 42.4 bits (101), Expect = 3e-05
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH-MDTVNNK 135
K LI+ GA V+ KD +G+T LH+ A + ++ L NG ++ ++
Sbjct: 59 AVKYLIKAGALVDPKDAEGSTCLHLAAKKGH--------YEVVQYLLSNGQMDVNCQDDG 110
Query: 136 GLTP 139
G TP
Sbjct: 111 GWTP 114
Score = 41.6 bits (99), Expect = 4e-05
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
L + +DV K+ +G TPL
Sbjct: 192 CVVLFLSRDSDVTLKNKEGETPLQC 216
Score = 41.2 bits (98), Expect = 7e-05
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 77 TTKLLIRCGA-DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
+ L+ G DVN +D G TP+ Y+ + + L L G+ ++ +N+
Sbjct: 92 VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH-------VDLVKL-LLSKGSDINIRDNE 143
Query: 136 GLTP 139
Sbjct: 144 ENIC 147
Score = 36.2 bits (85), Expect = 0.003
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 8/54 (14%)
Query: 86 ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
+ + +PLH A + + L + GA++DT + TP
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGH-------VDICHM-LVQAGANIDTCSEDQRTP 47
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 51.4 bits (124), Expect = 4e-08
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
K+L++ GA AKD TPL A R + + +++ +D N +G
Sbjct: 155 MIKILVQLGASPTAKDKADETPLM-RAMEFRNREALDLM--MDTVPSKSSLRLDYANKQG 211
Query: 137 LTP 139
+
Sbjct: 212 NSH 214
Score = 46.0 bits (110), Expect = 2e-06
Identities = 6/63 (9%), Positives = 11/63 (17%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+LL +V G + A + T +
Sbjct: 305 VLQLLQEKLDEVVRSLNTGAGGAVKRKKKAA--------PAVKRMKLAPSAPVRTRSRSR 356
Query: 137 LTP 139
Sbjct: 357 ARS 359
Score = 43.7 bits (104), Expect = 1e-05
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 13/68 (19%)
Query: 77 TTKLLIRC-----GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDT 131
L++ ++ + QGN+ LH + + E G ++
Sbjct: 188 ALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW--------EDVAMRFVEMGIDVNM 239
Query: 132 VNNKGLTP 139
+N+ P
Sbjct: 240 EDNEHTVP 247
Score = 43.7 bits (104), Expect = 1e-05
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
+ G DVN +D + PL++
Sbjct: 226 VAMRFVEMGIDVNMEDNEHTVPLYL 250
Score = 42.5 bits (101), Expect = 3e-05
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
+ LI G ++ G T LH+
Sbjct: 35 EVRRLIETGVSPTIQNRFGCTALHL 59
Score = 40.2 bits (95), Expect = 2e-04
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 6/55 (10%)
Query: 85 GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
+ K +G T LH + +I L + GA + TP
Sbjct: 128 EIGSHVKHCKGQTALHW------CVGLGPEYLEMIKILVQLGASPTAKDKADETP 176
Score = 38.3 bits (90), Expect = 9e-04
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 8/61 (13%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
+ + D + +H+ A + + L E G N G T
Sbjct: 4 SMTDFPKLNRIKSDDENMEKIHVAARKGQ--------TDEVRRLIETGVSPTIQNRFGCT 55
Query: 139 P 139
Sbjct: 56 A 56
Score = 37.9 bits (89), Expect = 0.001
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
T K L G + G P+H+
Sbjct: 68 TAKYLASVGEVHSLWH--GQKPIHL 90
Score = 37.2 bits (87), Expect = 0.002
Identities = 2/25 (8%), Positives = 7/25 (28%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
++ + A V + +
Sbjct: 338 VKRMKLAPSAPVRTRSRSRARSSAV 362
Score = 34.8 bits (81), Expect = 0.011
Identities = 7/55 (12%), Positives = 12/55 (21%), Gaps = 8/55 (14%)
Query: 85 GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
G V + A + ++ L E + N G
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSK--------QEVLQLLQEKLDEVVRSLNTGAGG 326
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 51.3 bits (124), Expect = 4e-08
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
K L++ ADVNAK G +PLH A HT I+ L +NGA + V++
Sbjct: 326 LVKFLLQHQADVNAKTKLGYSPLHQAAQQG---------HTDIVTLLLKNGASPNEVSSD 376
Query: 136 GLTPIQ 141
G TP+
Sbjct: 377 GTTPLA 382
Score = 50.6 bits (122), Expect = 7e-08
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 76 ATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
LL+ A+ N + G TPLH++A + L ++G +D
Sbjct: 259 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGH--------VPVADVLIKHGVMVDATTRM 310
Query: 136 GLTP 139
G TP
Sbjct: 311 GYTP 314
Score = 50.6 bits (122), Expect = 7e-08
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+LI+ G V+A G TPLH+ + Y + + L ++ A ++ G
Sbjct: 293 VADVLIKHGVMVDATTRMGYTPLHVASHYGN-------IKLVKF-LLQHQADVNAKTKLG 344
Query: 137 LTP 139
+P
Sbjct: 345 YSP 347
Score = 50.2 bits (121), Expect = 8e-08
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
KLL+ G ++ + G TPLHI A + + L + G + + +G
Sbjct: 194 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ--------VEVARSLLQYGGSANAESVQG 245
Query: 137 LTP 139
+TP
Sbjct: 246 VTP 248
Score = 49.4 bits (119), Expect = 2e-07
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
+ L++ G NA+ QG TPLH+ A H ++ L A+ + N
Sbjct: 227 VARSLLQYGGSANAESVQGVTPLHLAAQEG---------HAEMVALLLSKQANGNLGNKS 277
Query: 136 GLTP 139
GLTP
Sbjct: 278 GLTP 281
Score = 48.6 bits (117), Expect = 3e-07
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 74 CAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTV 132
K L++ GA N + + TPLH +A HT + L +N A ++
Sbjct: 26 HLPIVKNLLQRGASPNVSNVKVETPLH-MAARAG--------HTEVAKYLLQNKAKVNAK 76
Query: 133 NNKGLTP 139
TP
Sbjct: 77 AKDDQTP 83
Score = 48.6 bits (117), Expect = 4e-07
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
T L+ A +G TPLH+ A Y + + L L E AH + G
Sbjct: 128 TVLALLEKEASQACMTKKGFTPLHVAAKYGK-------VRVAEL-LLERDAHPNAAGKNG 179
Query: 137 LTP 139
LTP
Sbjct: 180 LTP 182
Score = 47.9 bits (115), Expect = 5e-07
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+LL+ A NA G TPLH+ + I+ L G + G
Sbjct: 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNN--------LDIVKLLLPRGGSPHSPAWNG 212
Query: 137 LTP 139
TP
Sbjct: 213 YTP 215
Score = 47.9 bits (115), Expect = 6e-07
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
LL++ GA N G TPL IA IS L + + + + +
Sbjct: 359 IVTLLLKNGASPNEVSSDGTTPLA-IAKRLGYISVTDVLKVVT----DETSFVLVSDKHR 413
Query: 137 LTPIQA 142
++ +
Sbjct: 414 MSFPET 419
Score = 47.5 bits (114), Expect = 8e-07
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
K L++ A VNAK TPLH A + + L L EN A+ + G
Sbjct: 62 VAKYLLQNKAKVNAKAKDDQTPLHCAARIGH-------TNMVKL-LLENNANPNLATTAG 113
Query: 137 LTP 139
TP
Sbjct: 114 HTP 116
Score = 47.5 bits (114), Expect = 8e-07
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
KLL+ A+ N G+TPLHI A +L L E A + KG
Sbjct: 95 MVKLLLENNANPNLATTAGHTPLHIAAREGH--------VETVLALLEKEASQACMTKKG 146
Query: 137 LTP 139
TP
Sbjct: 147 FTP 149
Score = 42.1 bits (100), Expect = 5e-05
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 85 GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
G G TPLH +A++ + I+ +L + GA + N K TP
Sbjct: 4 GISGGGGGESGLTPLH-VASFMGHLP-------IVKNLLQRGASPNVSNVKVETP 50
Score = 27.5 bits (62), Expect = 2.9
Identities = 4/29 (13%), Positives = 8/29 (27%), Gaps = 3/29 (10%)
Query: 77 TTKLLIRC---GADVNAKDYQGNTPLHII 102
T +L + V D + +
Sbjct: 392 VTDVLKVVTDETSFVLVSDKHRMSFPETV 420
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 50.5 bits (122), Expect = 5e-08
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+LL++ GA+VNA+ Y G++ LH + L + L +GA N
Sbjct: 165 MVQLLLQHGANVNAQMYSGSSALHSASGRGL-------LPLVRT-LVRSGADSSLKNCHN 216
Query: 137 LTP 139
TP
Sbjct: 217 DTP 219
Score = 44.8 bits (107), Expect = 5e-06
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 77 TTKLLIRCGADVNAKDYQ-GNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
T +LL+ GAD++A D + G +PL L + L L ++GA+++
Sbjct: 131 TVQLLLERGADIDAVDIKSGRSPLIHAVENNS-------LSMVQL-LLQHGANVNAQMYS 182
Query: 136 GLTP 139
G +
Sbjct: 183 GSSA 186
Score = 44.0 bits (105), Expect = 7e-06
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHM----DTV 132
+LL+ GA A D G T H+ + T + L ++ A +
Sbjct: 61 VVRLLVTAGASPMALDRHGQTAAHLACEHRS--------PTCLRALLDSAAPGTLDLEAR 112
Query: 133 NNKGLTP 139
N GLT
Sbjct: 113 NYDGLTA 119
Score = 43.6 bits (104), Expect = 1e-05
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
+ L+R GAD + K+ +TPL +
Sbjct: 198 LVRTLVRSGADSSLKNCHNDTPLMV 222
Score = 42.4 bits (101), Expect = 3e-05
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 12/67 (17%)
Query: 77 TTKLLI----RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV 132
L+ + G +++ + TPLH+ +++ L GA +
Sbjct: 24 AVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL--------PSVVRLLVTAGASPMAL 75
Query: 133 NNKGLTP 139
+ G T
Sbjct: 76 DRHGQTA 82
Score = 38.6 bits (91), Expect = 6e-04
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 88 VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
D G+TPLHI + +H ++ + G +D NN TP
Sbjct: 2 ATRADEDGDTPLHIAVVQ----GNLPAVHRLVNLFQQGGRELDIYNNLRQTP 49
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 49.3 bits (119), Expect = 5e-08
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
++L++ GADVNA D +G+TPLH+ A + L + + L +NGA ++ + G
Sbjct: 95 IVEVLLKNGADVNANDMEGHTPLHLAAMFGH-------LEIVEV-LLKNGADVNAQDKFG 146
Query: 137 LTP 139
T
Sbjct: 147 KTA 149
Score = 47.7 bits (115), Expect = 2e-07
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
++L+ GADVNA+D G TPLH+ A L + + L +NGA ++ V++ G
Sbjct: 29 EVRILMANGADVNAEDASGWTPLHLAAFNGH-------LEIVEV-LLKNGADVNAVDHAG 80
Query: 137 LTP 139
+TP
Sbjct: 81 MTP 83
Score = 46.6 bits (112), Expect = 5e-07
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
++L++ GADVNA D+ G TPL + A + L + + L +NGA ++ + +G
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGH-------LEIVEV-LLKNGADVNANDMEG 113
Query: 137 LTP 139
TP
Sbjct: 114 HTP 116
Score = 42.0 bits (100), Expect = 2e-05
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
++L++ GADVNA+D G T I
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAFDI 152
Score = 30.4 bits (70), Expect = 0.22
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 9/56 (16%)
Query: 85 GADVN-AKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
G+ + L A R + L NGA ++ + G TP
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGR--------DDEVRILMANGADVNAEDASGWTP 50
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 49.3 bits (119), Expect = 6e-08
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNK 135
K+L+ CG DVN D+ G TPL A + H + L E+GA +
Sbjct: 84 IVKMLLDCGVDVNEYDWNGGTPLL-YAVHGN--------HVKCVKMLLESGADPTIETDS 134
Query: 136 GLTP 139
G
Sbjct: 135 GYNS 138
Score = 48.9 bits (118), Expect = 8e-08
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 10/64 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
I +N D +G TPL A +++ L +NGA +
Sbjct: 18 YLATRIEQENVINHTDEEGFTPLM-WAAAHG--------QIAVVEFLLQNGADPQLLGKG 68
Query: 136 GLTP 139
+
Sbjct: 69 RESA 72
Score = 45.8 bits (110), Expect = 1e-06
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 76 ATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNN 134
A + L++ GAD + L + + +T I+ L + G ++ +
Sbjct: 50 AVVEFLLQNGADPQLLGKGRESALSLACSKG---------YTDIVKMLLDCGVDVNEYDW 100
Query: 135 KGLTP 139
G TP
Sbjct: 101 NGGTP 105
Score = 27.0 bits (61), Expect = 3.1
Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 8/45 (17%)
Query: 95 GNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
+ +H +A + E ++ + +G TP
Sbjct: 3 NSLSVHQLAAQGE--------MLYLATRIEQENVINHTDEEGFTP 39
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 47.7 bits (115), Expect = 6e-08
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNK 135
KLL+ GADVNAKD G TPLH+ A H ++ L E GA ++ +
Sbjct: 17 VVKLLLEAGADVNAKDKNGRTPLHLAARNG---------HLEVVKLLLEAGADVNAKDKN 67
Query: 136 GLTP 139
G TP
Sbjct: 68 GRTP 71
Score = 43.5 bits (104), Expect = 2e-06
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
KLL+ GADVNAKD G TPLH+
Sbjct: 50 VVKLLLEAGADVNAKDKNGRTPLHL 74
Score = 25.4 bits (57), Expect = 5.0
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 10/46 (21%)
Query: 95 GNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNKGLTP 139
G TPLH+ A H ++ L E GA ++ + G TP
Sbjct: 2 GRTPLHLAARNG---------HLEVVKLLLEAGADVNAKDKNGRTP 38
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 49.7 bits (120), Expect = 8e-08
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 77 TTKLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
T+LL+ VN D Y NT LH T+I L E GA++D N K
Sbjct: 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN--------TTVISLLLEAGANVDAQNIK 209
Query: 136 GLTP 139
G +
Sbjct: 210 GESA 213
Score = 49.0 bits (118), Expect = 2e-07
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNK 135
L++ GAD + D +G + +H+ A + HT I+ L G +D ++
Sbjct: 91 MVVQLMKYGADPSLIDGEGCSCIHLAAQFG---------HTSIVAYLIAKGQDVDMMDQN 141
Query: 136 GLTP 139
G+TP
Sbjct: 142 GMTP 145
Score = 44.7 bits (107), Expect = 4e-06
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV-NNK 135
+ L+ G DV D + T LH A R + + GA +D + +
Sbjct: 24 RCRELVEAGYDVRQPDKENVTLLHWAAINNR-------IDLVKY-YISKGAIVDQLGGDL 75
Query: 136 GLTP 139
TP
Sbjct: 76 NSTP 79
Score = 42.4 bits (101), Expect = 3e-05
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
LL+ GA+V+A++ +G + L +
Sbjct: 192 VISLLLEAGANVDAQNIKGESALDL 216
Score = 41.7 bits (99), Expect = 5e-05
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 77 TTKLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
K I GA V+ +TPLH L ++ L + GA ++ +
Sbjct: 57 LVKYYISKGAIVDQLGGDLNSTPLHWATRQGH-------LSMVVQ-LMKYGADPSLIDGE 108
Query: 136 GLTPI 140
G + I
Sbjct: 109 GCSCI 113
Score = 32.0 bits (74), Expect = 0.095
Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 8/52 (15%)
Query: 88 VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
+ D + AT +L E G + + + +T
Sbjct: 2 MTHIDDYSTWDIV-KATQYGIYE-------RCRELVEAGYDVRQPDKENVTL 45
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 48.1 bits (116), Expect = 8e-08
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 24/71 (33%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI--------IATYERAISDFQTLHTIILDLTENGAH 128
KLL+ GADVNAKD G TPLH+ + L E GA
Sbjct: 17 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL----------------LLEAGAD 60
Query: 129 MDTVNNKGLTP 139
++ + G TP
Sbjct: 61 VNAKDKNGRTP 71
Score = 48.1 bits (116), Expect = 9e-08
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 24/71 (33%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI--------IATYERAISDFQTLHTIILDLTENGAH 128
KLL+ GADVNAKD G TPLH+ + L E GA
Sbjct: 50 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL----------------LLEAGAD 93
Query: 129 MDTVNNKGLTP 139
++ + G TP
Sbjct: 94 VNAKDKNGRTP 104
Score = 43.1 bits (103), Expect = 5e-06
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
KLL+ GADVNAKD G TPLH+ A
Sbjct: 83 VVKLLLEAGADVNAKDKNGRTPLHLAARN 111
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 48.2 bits (116), Expect = 9e-08
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
++L++ GADVNA D G TPLH+ A L + L ++GA ++ + G
Sbjct: 62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGH-------LEIAEV-LLKHGADVNAQDKFG 113
Query: 137 LTP 139
T
Sbjct: 114 KTA 116
Score = 45.5 bits (109), Expect = 9e-07
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
++L+ GADVNAKD G TPL++ + I+ L +NGA ++ V+ G
Sbjct: 29 EVRILMANGADVNAKDEYGLTPLYLATAHGH--------LEIVEVLLKNGADVNAVDAIG 80
Query: 137 LTP 139
TP
Sbjct: 81 FTP 83
Score = 43.5 bits (104), Expect = 5e-06
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
++L++ GADVNA+D G T I
Sbjct: 95 IAEVLLKHGADVNAQDKFGKTAFDI 119
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 48.6 bits (117), Expect = 9e-08
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
T K+L+ GADVN D G P+H +A E HT ++ + + + +G
Sbjct: 83 TLKVLVEHGADVNVPDGTGALPIH-LAVQEG--------HTAVVSFLAAESDLHRRDARG 133
Query: 137 LTP 139
LTP
Sbjct: 134 LTP 136
Score = 47.0 bits (113), Expect = 3e-07
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+LL R +A + G T L + + I L+L + GA + + G
Sbjct: 18 VRRLLHRELVHPDALNRFGKTALQ-VMMFGS--------TAIALELLKQGASPNVQDTSG 68
Query: 137 LTP 139
+P
Sbjct: 69 TSP 71
Score = 45.5 bits (109), Expect = 1e-06
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
L++ GA N +D G +P+H A L T+ + L E+GA ++ + G
Sbjct: 50 IALELLKQGASPNVQDTSGTSPVHDAARTGF-------LDTLKV-LVEHGADVNVPDGTG 101
Query: 137 LTP 139
P
Sbjct: 102 ALP 104
Score = 38.5 bits (91), Expect = 3e-04
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
L +D++ +D +G TPL +
Sbjct: 116 VVSFLAA-ESDLHRRDARGLTPLEL 139
Score = 27.0 bits (61), Expect = 3.0
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 7/48 (14%)
Query: 95 GNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQA 142
L A + + L H D +N G T +Q
Sbjct: 2 AGDRLSGAAARGD-------VQEVRRLLHRELVHPDALNRFGKTALQV 42
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 49.5 bits (118), Expect = 1e-07
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ L++ G VN KD G +PLHI A+ I+ L GAH++ VN G
Sbjct: 55 IVEFLLQLGVPVNDKDDAGWSPLHIAASAG--------XDEIVKALLVKGAHVNAVNQNG 106
Query: 137 LTPIQATTTG----VADLILRTLTKINLK 161
TP+ + +A ++L + K
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Score = 47.2 bits (112), Expect = 6e-07
Identities = 8/63 (12%), Positives = 20/63 (31%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ ++ + D T LH + + L + G ++ ++ G
Sbjct: 22 LKERILADKSLATRTDQDSRTALHWACSAGH-------TEIVEF-LLQLGVPVNDKDDAG 73
Query: 137 LTP 139
+P
Sbjct: 74 WSP 76
Score = 37.5 bits (87), Expect = 0.001
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+L+ A N +D +GNTPLH+ ER L GA + N +
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERV--------EEAKFLVTQGASIYIENKEE 205
Query: 137 LTPIQATT 144
TP+Q
Sbjct: 206 KTPLQVAK 213
Score = 36.0 bits (83), Expect = 0.003
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 19/133 (14%)
Query: 40 LSVASRQN-QSLLHLCVNYETPVDTFHTNDVCKFPCAA------TTKLLIRCGADVNAKD 92
L +A+ ++ + V+ + N AA +L+ GA+ +AKD
Sbjct: 77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 93 YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATT----TGVA 148
+ T +H A ++ L A + + +G TP+ A
Sbjct: 137 HYDATAMHRAAAKGN--------LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEA 188
Query: 149 DLILRTLTKINLK 161
++ I ++
Sbjct: 189 KFLVTQGASIYIE 201
Score = 29.5 bits (66), Expect = 0.56
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
K L+ GA + ++ + TPL +
Sbjct: 187 EAKFLVTQGASIYIENKEEKTPLQVAKGG 215
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 48.2 bits (116), Expect = 1e-07
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 25/88 (28%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI-------IATY--------ERAISDFQT--LHT-- 117
T + L+ GAD NA + G P+ + +A A T +H
Sbjct: 27 TVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAA 86
Query: 118 ------IILDLTENGAHMDTVNNKGLTP 139
++ L GA +D + G P
Sbjct: 87 REGFLDTLVVLHRAGARLDVCDAWGRLP 114
Score = 44.4 bits (106), Expect = 3e-06
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
T +L R GA ++ D G P+ +
Sbjct: 93 TLVVLHRAGARLDVCDAWGRLPVDL 117
Score = 43.2 bits (103), Expect = 6e-06
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 10/59 (16%)
Query: 85 GADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNKGLTPIQA 142
++ + L A + L E GA + +N G PIQ
Sbjct: 2 SPGIHMLGGSSDAGLATAAARG---------QVETVRQLLEAGADPNALNRFGRRPIQV 51
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 49.4 bits (119), Expect = 1e-07
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ LI ADVNA D G + LH A + L +NGA+ D NN+
Sbjct: 139 MLEDLINSHADVNAVDDLGKSALHWAAAVNN--------VDAAVVLLKNGANKDMQNNRE 190
Query: 137 LTP 139
TP
Sbjct: 191 ETP 193
Score = 48.2 bits (116), Expect = 3e-07
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+L++ GA+ + ++ + TPL + A T + L ++ A+ D ++
Sbjct: 172 AAVVLLKNGANKDMQNNREETPLFLAAREGS-------YETAKV-LLDHFANRDITDHMD 223
Query: 137 LTP 139
P
Sbjct: 224 RLP 226
Score = 44.0 bits (105), Expect = 8e-06
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 77 TTKLLIRCGA-DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
++LIR A D++A+ + G TPL + A ++ DL + A ++ V++
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAV--------EGMLEDLINSHADVNAVDDL 156
Query: 136 GLTP 139
G +
Sbjct: 157 GKSA 160
Score = 43.2 bits (103), Expect = 1e-05
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
K L+ AD N +D G TPLH +
Sbjct: 72 AAKRLLEASADANIQDNMGRTPLHAAVSA 100
Score = 42.1 bits (100), Expect = 3e-05
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
T K+L+ A+ + D+ P I
Sbjct: 205 TAKVLLDHFANRDITDHMDRLPRDI 229
Score = 41.3 bits (98), Expect = 6e-05
Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 51 LHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADV-NAKDYQGNTPLHIIATYERAI 109
L + ++T + + A I GA + N D G T LH+ A Y R
Sbjct: 14 LMIASCSGGGLETGN--SEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR-- 69
Query: 110 SDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
L E A + +N G TP
Sbjct: 70 -----SDAAKR-LLEASADANIQDNMGRTP 93
Score = 35.5 bits (83), Expect = 0.007
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 87 DVNAKDYQGNTPLHIIATYERAISDFQTLHT-----IILDLTENGAH-MDTVNNKGLTP 139
DVN + G TPL I + + + +I D GA + + G T
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 48.6 bits (117), Expect = 2e-07
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ LI ADVNA D G + LH A + ++ L +NGA+ D NN+
Sbjct: 107 MLEDLINSHADVNAVDDLGKSALHWAAAVNN-------VDAAVV-LLKNGANKDMQNNRE 158
Query: 137 LTP 139
TP
Sbjct: 159 ETP 161
Score = 48.2 bits (116), Expect = 3e-07
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+L++ GA+ + ++ + TPL + A T + L ++ A+ D ++
Sbjct: 140 AAVVLLKNGANKDMQNNREETPLFLAAREGS-------YETAKV-LLDHFANRDITDHMD 191
Query: 137 LTP 139
P
Sbjct: 192 RLP 194
Score = 45.5 bits (109), Expect = 2e-06
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 74 CAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH-MDTV 132
+ K L+ AD N +D G TPLH + + + L N A +D
Sbjct: 37 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADA--------QGVFQILIRNRATDLDAR 88
Query: 133 NNKGLTP 139
+ G TP
Sbjct: 89 MHDGTTP 95
Score = 44.3 bits (106), Expect = 5e-06
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 77 TTKLLIRCGA-DVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
++LIR A D++A+ + G TPL + A ++ DL + A ++ V++
Sbjct: 73 VFQILIRNRATDLDARMHDGTTPLILAARLAV--------EGMLEDLINSHADVNAVDDL 124
Query: 136 GLTP 139
G +
Sbjct: 125 GKSA 128
Score = 42.4 bits (101), Expect = 3e-05
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
T K+L+ A+ + D+ P I
Sbjct: 173 TAKVLLDHFANRDITDHMDRLPRDI 197
Score = 39.7 bits (94), Expect = 2e-04
Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 74 CAATTKLLIRCGADV-NAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV 132
A I GA + N D G T LH+ A Y R L E A +
Sbjct: 3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSR-------SDAAKR-LLEASADANIQ 54
Query: 133 NNKGLTP 139
+N G TP
Sbjct: 55 DNMGRTP 61
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 48.8 bits (117), Expect = 2e-07
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA------HMD 130
+LLI GAD+ A+D GNT LHI+ Q + ++
Sbjct: 136 IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLL----SYDGGDHLKSLEL 191
Query: 131 TVNNKGLTP 139
NN+GLTP
Sbjct: 192 VPNNQGLTP 200
Score = 43.4 bits (103), Expect = 1e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 76 ATTKLLIRCGADVNAKDYQGNTPLHIIATY 105
A +KLL G +V+ + G T LHI A Y
Sbjct: 18 ALSKLLKFEGCEVHQRGAMGETALHIAALY 47
Score = 40.3 bits (95), Expect = 1e-04
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 21/76 (27%)
Query: 77 TTKLLIRCGADVNAKD-------------YQGNTPLHIIATYERAISDFQTLHTIILDLT 123
+ L+ GA V+A+ Y G PL A I+ L
Sbjct: 90 LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS--------EEIVRLLI 141
Query: 124 ENGAHMDTVNNKGLTP 139
E+GA + ++ G T
Sbjct: 142 EHGADIRAQDSLGNTV 157
Score = 37.6 bits (88), Expect = 0.001
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 77 TTKLLIRCGADV-----NAKDYQGNTPLHIIATY 105
+L+ ++ ++ Y+G T LHI
Sbjct: 52 AAMVLMEAAPELVFEPMTSELYEGQTALHIAVIN 85
Score = 37.2 bits (87), Expect = 0.002
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 14/66 (21%)
Query: 77 TTKLLIRCGADVNAK------DYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMD 130
LL+ + K + QG TP + + L + H+
Sbjct: 173 MYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN--------IVMFQHLMQKRKHIA 224
Query: 131 TVNNKG 136
++
Sbjct: 225 AAHHHH 230
Score = 31.4 bits (72), Expect = 0.14
Identities = 2/20 (10%), Positives = 8/20 (40%)
Query: 77 TTKLLIRCGADVNAKDYQGN 96
+ L++ + A + +
Sbjct: 212 MFQHLMQKRKHIAAAHHHHH 231
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 48.6 bits (117), Expect = 2e-07
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 77 TTKLLI-RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
K+L+ GADVNA D G L SD + I L ++GA ++ +
Sbjct: 163 VLKILLDEMGADVNACDNMGRNALIHALLS----SDDSDVEAITHLLLDHGADVNVRGER 218
Query: 136 GLTP-IQATTTG----VADLILRTLTKINLK 161
G TP I A V L+ + +IN
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDT 249
Score = 47.9 bits (115), Expect = 4e-07
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 74 CAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN 133
A T LL+ GADVN + +G TPL + + L + L + ++ +
Sbjct: 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKH-------LGLVQRLLEQEHIEINDTD 250
Query: 134 NKGLTP 139
+ G T
Sbjct: 251 SDGKTA 256
Score = 45.5 bits (109), Expect = 3e-06
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+LL+R GAD + G TP + A + + L GA ++ + G
Sbjct: 54 IVELLLRHGADPVLRKKNGATPFLLAAIAGS-------VKLLKL-FLSKGADVNECDFYG 105
Query: 137 LTP 139
T
Sbjct: 106 FTA 108
Score = 43.2 bits (103), Expect = 2e-05
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
KL + GADVN D+ G T A Y + + L + GA+++
Sbjct: 87 LLKLFLSKGADVNECDFYGFTAFMEAAVYGK--------VKALKFLYKRGANVNLRRKTK 138
Query: 137 LTPIQATTTG 146
+ G
Sbjct: 139 EDQERLRKGG 148
Score = 40.9 bits (97), Expect = 1e-04
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 80 LLIRCGADVNAKDYQGNTPLHI 101
LL + ++N D G T L +
Sbjct: 238 LLEQEHIEINDTDSDGKTALLL 259
Score = 40.5 bits (96), Expect = 1e-04
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 77 TTKLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
+ L+ GA+VN ++ G TPLH R I+ L +GA
Sbjct: 20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR--------EDIVELLLRHGADPVLRKKN 71
Query: 136 GLTP 139
G TP
Sbjct: 72 GATP 75
Score = 38.2 bits (90), Expect = 0.001
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 17/73 (23%)
Query: 77 TTKLLIRCGADVNAKD----------YQGNTPLHIIATYERAISDFQTLHTIILDLTENG 126
K L + GA+VN + G T L A + + + L E G
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH-------VEVLKILLDEMG 172
Query: 127 AHMDTVNNKGLTP 139
A ++ +N G
Sbjct: 173 ADVNACDNMGRNA 185
Score = 29.0 bits (66), Expect = 1.1
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 77 TTKLLIRCGADVNAKD 92
+LL + GA + D
Sbjct: 268 IAELLCKRGASTDCGD 283
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 48.6 bits (116), Expect = 3e-07
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 77 TTKLLIRCG---ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDT- 131
L G AD+ +D +GNT LH + + T + D L A +
Sbjct: 155 IVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPD 214
Query: 132 ------VNNKGLTP 139
+NN GL+P
Sbjct: 215 TNLEALLNNDGLSP 228
Score = 39.0 bits (91), Expect = 4e-04
Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 38/131 (29%)
Query: 74 CAATTKLLIRCGADVNAKD--------------YQGNTPLHIIATYERAISDFQTLHTII 119
C +LL+ GADV+A+ Y G PL + A + I+
Sbjct: 105 CKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ--------PHIV 156
Query: 120 LDLTENG---AHMDTVNNKGLTP-------------IQATTTGVADLILRTLTKINLKCL 163
LTENG A + +++G T T + DL+L K+
Sbjct: 157 HYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN 216
Query: 164 AAKVITQNNIT 174
++ + ++
Sbjct: 217 LEALLNNDGLS 227
Score = 32.8 bits (75), Expect = 0.045
Identities = 4/29 (13%), Positives = 10/29 (34%), Gaps = 4/29 (13%)
Query: 79 KLLIRCGADVNAKDYQ----GNTPLHIIA 103
L+ + ++++ G T L
Sbjct: 26 SFLLTHKKRLTDEEFREPSTGKTCLPKAL 54
Score = 27.1 bits (60), Expect = 3.6
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 86 ADVNAKDYQGNTPLHI 101
+ Y+G T LHI
Sbjct: 84 SPFRDVYYRGQTALHI 99
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 48.3 bits (116), Expect = 3e-07
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ + LI G VN +PLH + + L ++GA ++ V
Sbjct: 74 SLRNLISQGWAVNIITADHVSPLHEACLGGH--------LSCVKILLKHGAQVNGVTADW 125
Query: 137 LTP 139
TP
Sbjct: 126 HTP 128
Score = 46.3 bits (111), Expect = 2e-06
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMD 130
LL+ GAD AK+ +G P+ + E L L GA +
Sbjct: 237 LACLLMDFGADTQAKNAEGKRPVE-LVPPES--------PLAQLFLEREGASLP 281
Score = 44.8 bits (107), Expect = 5e-06
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 76 ATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
A K L+ GADVN ++PLH + L L + GA N +
Sbjct: 204 ACVKKLLESGADVNQGKG-QDSPLHAVVRTAS-------EELACL-LMDFGADTQAKNAE 254
Query: 136 GLTP 139
G P
Sbjct: 255 GKRP 258
Score = 43.2 bits (103), Expect = 2e-05
Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 24/87 (27%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYER---------------AISDFQT-LHT--- 117
K+L++ GA VN +TPL SD + +H
Sbjct: 107 CVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR 166
Query: 118 -----IILDLTENGAHMDTVNNKGLTP 139
+ L G ++D + TP
Sbjct: 167 RGHVECVNSLIAYGGNIDHKISHLGTP 193
Score = 39.0 bits (92), Expect = 5e-04
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 23/86 (26%)
Query: 77 TTKLLIRCGADVNAKDYQ-----GNTPLHIIATYE----------RAISDFQTLHT---- 117
+ L+ G+ + + D + G+ P A+SD+ +H
Sbjct: 10 HSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIH 69
Query: 118 ----IILDLTENGAHMDTVNNKGLTP 139
+ +L G ++ + ++P
Sbjct: 70 GHQLSLRNLISQGWAVNIITADHVSP 95
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 48.4 bits (116), Expect = 3e-07
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
L++ GAD + + LH A R + L+ T+ ++ ++ G
Sbjct: 181 LVAYLMKAGADPTIYNKSERSALH-QAAANRDFGMMVYM----LNSTKLKGDIEELDRNG 235
Query: 137 LTP 139
+T
Sbjct: 236 MTA 238
Score = 48.4 bits (116), Expect = 3e-07
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 8/72 (11%)
Query: 68 DVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA 127
+ + K I GADVNA D NTPL + R + L + GA
Sbjct: 139 EKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR-------RRLVAY-LMKAGA 190
Query: 128 HMDTVNNKGLTP 139
N +
Sbjct: 191 DPTIYNKSERSA 202
Score = 46.1 bits (110), Expect = 2e-06
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYER-AISDFQTLHTIILDLTENGAHMDTVNNK 135
T+ + R ++ + T LH IA+ S+ +H GA ++ ++
Sbjct: 108 ITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKE-CIAAGADVNAMDCD 165
Query: 136 GLTP 139
TP
Sbjct: 166 ENTP 169
Score = 44.9 bits (107), Expect = 6e-06
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 77 TTKLLIR-CGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
K L+ G++ + +D G TP+ + A R +++ L + GA ++ V+
Sbjct: 294 IVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR--------IEVVMYLIQQGASVEAVDAT 345
Query: 136 GLTP 139
T
Sbjct: 346 DHTA 349
Score = 44.2 bits (105), Expect = 1e-05
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 15/72 (20%)
Query: 76 ATTKLLIRCGADVN--------AKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA 127
A+ KLL+ GA V+ ++ Y+G T LH A + + + E G+
Sbjct: 252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN-------MPIVKYLVGEKGS 304
Query: 128 HMDTVNNKGLTP 139
+ D + G TP
Sbjct: 305 NKDKQDEDGKTP 316
Score = 42.6 bits (101), Expect = 3e-05
Identities = 7/63 (11%), Positives = 15/63 (23%), Gaps = 10/63 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ + LH A AI++ +T ++ +
Sbjct: 76 LGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEP---------ITRESVNIIDPRH-N 125
Query: 137 LTP 139
T
Sbjct: 126 RTV 128
Score = 41.5 bits (98), Expect = 8e-05
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
LI+ GA V A D +T +
Sbjct: 328 VVMYLIQQGASVEAVDATDHTARQL 352
Score = 39.9 bits (94), Expect = 2e-04
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 16/74 (21%)
Query: 77 TTKLLI---RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA------ 127
++ + D+ D G T L I+A E + + L L E GA
Sbjct: 214 MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG----RDQVASAKL-LVEKGAKVDYDG 268
Query: 128 --HMDTVNNKGLTP 139
D+ KG T
Sbjct: 269 AARKDSEKYKGRTA 282
Score = 31.1 bits (71), Expect = 0.22
Identities = 3/55 (5%), Positives = 6/55 (10%), Gaps = 8/55 (14%)
Query: 85 GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
N + P + N +
Sbjct: 51 KRQRNELQHYSLYPNPQGYGNGNDF--------LGDFNHTNLQIPTEPEPESPIK 97
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 47.1 bits (113), Expect = 3e-07
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 25/88 (28%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI-------IATY--------ERAISDFQT--LHT-- 117
+ L+ GA+ NA + G P+ + +A A T +H
Sbjct: 27 EVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAA 86
Query: 118 ------IILDLTENGAHMDTVNNKGLTP 139
++ L GA +D + G P
Sbjct: 87 REGFLDTLVVLHRAGARLDVRDAWGRLP 114
Score = 44.4 bits (106), Expect = 3e-06
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
T +L R GA ++ +D G P+ + H + L N+
Sbjct: 93 TLVVLHRAGARLDVRDAWGRLPVDLAEELG---------HRDVARYLRAAAGGTRGSNHA 143
Query: 136 GLTPIQ 141
+ +
Sbjct: 144 RIDAAE 149
Score = 34.4 bits (80), Expect = 0.009
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 85 GADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ 141
A + + L A R + + L E GA+ + N+ G PIQ
Sbjct: 4 AAGSSMEP--SADWLATAAARGR-------VEEVRA-LLEAGANPNAPNSYGRRPIQ 50
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 47.6 bits (114), Expect = 4e-07
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 7/63 (11%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ + VN D G+T L+ + + T+ ++ N G
Sbjct: 88 WLRECLDNRVGVNGLDKAGSTALYWACHGGH-------KDIVEMLFTQPNIELNQQNKLG 140
Query: 137 LTP 139
T
Sbjct: 141 DTA 143
Score = 47.6 bits (114), Expect = 4e-07
Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 8/65 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+LL+ GA + ++ + + A +++ A N +
Sbjct: 155 IVQLLLAKGARTDLRNIEKKLAFDMATNAACA--------SLLKKKQGTDAVRTLSNAED 206
Query: 137 LTPIQ 141
+
Sbjct: 207 YLDDE 211
Score = 47.2 bits (113), Expect = 5e-07
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 77 TTKLLI-RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
++L + ++N ++ G+T LH A + L L GA D N +
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGY-------ADIVQL-LLAKGARTDLRNIE 172
Query: 136 GLTPIQ-ATTTGVADLI 151
AT A L+
Sbjct: 173 KKLAFDMATNAACASLL 189
Score = 36.5 bits (85), Expect = 0.003
Identities = 12/83 (14%), Positives = 22/83 (26%), Gaps = 20/83 (24%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIA------------TYERAISDFQTLHT------- 117
T L D+ +T E+A S LH
Sbjct: 27 TPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNL 86
Query: 118 -IILDLTENGAHMDTVNNKGLTP 139
+ + +N ++ ++ G T
Sbjct: 87 SWLRECLDNRVGVNGLDKAGSTA 109
Score = 35.3 bits (82), Expect = 0.008
Identities = 4/28 (14%), Positives = 7/28 (25%)
Query: 74 CAATTKLLIRCGADVNAKDYQGNTPLHI 101
CA+ K A + +
Sbjct: 185 CASLLKKKQGTDAVRTLSNAEDYLDDED 212
Score = 30.7 bits (70), Expect = 0.26
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 9/64 (14%)
Query: 89 NAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP-IQATTTGV 147
G + RA+ F+ +L + + + T + T+ G
Sbjct: 6 PKPVKPGQVKVF------RALYTFE--PRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR 57
Query: 148 ADLI 151
LI
Sbjct: 58 TGLI 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 47.0 bits (113), Expect = 4e-07
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ L+ GA+ + KD G +H A L T+ L E A ++ +N+G
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGF-------LDTLQT-LLEFQADVNIEDNEG 103
Query: 137 LTP 139
P
Sbjct: 104 NLP 106
Score = 46.2 bits (111), Expect = 6e-07
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
L++ +VNA++ G T L ++ I+ L GA+ D + G
Sbjct: 20 QLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARR---------LLLRGANPDLKDRTG 70
Query: 137 LTP 139
Sbjct: 71 FAV 73
Score = 43.9 bits (105), Expect = 4e-06
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAH-MDTVNNK 135
T + L+ ADVN +D +GN PLH+ A L + L ++ A + N+K
Sbjct: 85 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGH-------LRVVEF-LVKHTASNVGHRNHK 136
Query: 136 GLTP 139
G T
Sbjct: 137 GDTA 140
Score = 37.7 bits (89), Expect = 6e-04
Identities = 6/30 (20%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 77 TTKLLIRCGA-DVNAKDYQGNTPLHIIATY 105
+ L++ A +V ++++G+T + Y
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLARLY 147
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 48.1 bits (114), Expect = 5e-07
Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 4/96 (4%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
K L++ G++ D G + L A D T ++ L + ++
Sbjct: 146 LVKHLVKHGSNRLYGDNMGESCLV-KAVKSVNNYDSGTFEALLDYL---YPCLILEDSMN 201
Query: 137 LTPIQATTTGVADLILRTLTKINLKCLAAKVITQNN 172
T + K L L ++ + N
Sbjct: 202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN 237
Score = 45.4 bits (107), Expect = 3e-06
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 65 HTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTE 124
N K L +NA+D G+T L+I A +I+ L +
Sbjct: 253 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN--------ISIVDALLD 304
Query: 125 NGAHMDTVNNKGLTPIQ 141
GA N GL P+
Sbjct: 305 YGADPFIANKSGLRPVD 321
Score = 45.0 bits (106), Expect = 4e-06
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 77 TTKLLIRCGADVNAK-DYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
++N D GNTPLH + + ++ L ++G++ +N
Sbjct: 112 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIAN--------LELVKHLVKHGSNRLYGDNM 163
Query: 136 GLTPIQATTTGVADLILRTLTKINLKCLAAKVITQNN 172
G + + V + T + L L +I +++
Sbjct: 164 GESCLVKAVKSVNNYDSGTFEAL-LDYLYPCLILEDS 199
Score = 40.0 bits (93), Expect = 2e-04
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYE 106
L+ GAD + G P+ A E
Sbjct: 298 IVDALLDYGADPFIANKSGLRPVDFGAGLE 327
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 47.0 bits (113), Expect = 5e-07
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ L+ GA+VN ++ +G TPL + + Y R + L E GA + + G
Sbjct: 116 MSYFLLEHGANVNDRNLEGETPLIVASKYGR-------SEIVKK-LLELGADISARDLTG 167
Query: 137 LTP 139
LT
Sbjct: 168 LTA 170
Score = 46.2 bits (111), Expect = 1e-06
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
L+ + KD +G+T L R L L G++++T + G
Sbjct: 50 AIDKLVENFDKLEDKDIEGSTALIWAVKNNR-------LGIAEK-LLSKGSNVNTKDFSG 101
Query: 137 LTP 139
TP
Sbjct: 102 KTP 104
Score = 44.7 bits (107), Expect = 3e-06
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ L+ G++VN KD+ G TPL + L E+GA+++ N +G
Sbjct: 83 IAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY-------SEMSYF-LLEHGANVNDRNLEG 134
Query: 137 LTP 139
TP
Sbjct: 135 ETP 137
Score = 43.1 bits (103), Expect = 1e-05
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
K L+ GAD++A+D G T +
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIF 177
Score = 33.5 bits (78), Expect = 0.024
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 10/63 (15%)
Query: 79 KLLIRCGADV--NAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ I D N +D TPL + I L EN ++ + +G
Sbjct: 17 EKSINQNLDFLRNYRDSYNRTPLMVACMLGM--------ENAIDKLVENFDKLEDKDIEG 68
Query: 137 LTP 139
T
Sbjct: 69 STA 71
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 45.3 bits (108), Expect = 6e-07
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
++L+ GADV AKD G+TPLH+ A L + L L E GA + + G
Sbjct: 39 EVRILMANGADVAAKDKNGSTPLHLAARNGH-------LEVVKL-LLEAGADVXAQDKFG 90
Query: 137 LTPIQATT 144
T +
Sbjct: 91 KTAFDISI 98
Score = 39.9 bits (94), Expect = 6e-05
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 13/64 (20%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
+ L+ G+ + + L A + L NGA + +
Sbjct: 9 HSSGLVPRGSHMGSD---LGKKLLEAARAG---------QDDEVRILMANGADVAAKDKN 56
Query: 136 GLTP 139
G TP
Sbjct: 57 GSTP 60
Score = 34.1 bits (79), Expect = 0.007
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
KLL+ GADV A+D G T I
Sbjct: 72 VVKLLLEAGADVXAQDKFGKTAFDISIDN 100
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 47.1 bits (113), Expect = 6e-07
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNK 135
++L V+ D +GNTPL+ IA + I L + GA ++ N+
Sbjct: 21 VKEILQDTTYQVDEVDTEGNTPLN-IAVHNN--------DIEIAKALIDRGADINLQNSI 71
Query: 136 GLTP 139
+P
Sbjct: 72 SDSP 75
Score = 43.6 bits (104), Expect = 9e-06
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 77 TTKLLIRCG-ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNN 134
KLL+ G D++ ++ G T L + L+ I+ L ENGA +N
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTALIEAVGL----REGNQLYQDIVKLLMENGADQSIKDN 176
Query: 135 KGLTP 139
G T
Sbjct: 177 SGRTA 181
Score = 42.4 bits (101), Expect = 2e-05
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
KLL+ GAD + KD G T +
Sbjct: 160 IVKLLMENGADQSIKDNSGRTAMDY 184
Score = 42.4 bits (101), Expect = 2e-05
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
K LI GAD+N ++ ++P
Sbjct: 54 IAKALIDRGADINLQNSISDSPYLYAGAQ 82
Score = 35.5 bits (83), Expect = 0.005
Identities = 4/26 (15%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 77 TTKLLIRCGA-DVNAKDYQGNTPLHI 101
+++ D+N + G L
Sbjct: 87 ILAYMLKHATPDLNKHNRYGGNALIP 112
Score = 29.0 bits (66), Expect = 0.86
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Query: 91 KDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
K Y+ L + + L + +D V+ +G TP
Sbjct: 2 KTYEVGALLEAANQRDT--------KKVKEILQDTTYQVDEVDTEGNTP 42
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 46.9 bits (112), Expect = 7e-07
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 7/64 (10%)
Query: 77 TTKLLIRCGADVNAKDYQ-GNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
L++ GA + A G T Y +D L + M +N+
Sbjct: 102 ICMALVQHGAAIFATTLSDGATAFEKCDPYREGYAD------CATYLADVEQSMGLMNSG 155
Query: 136 GLTP 139
+
Sbjct: 156 AVYA 159
Score = 46.1 bits (110), Expect = 2e-06
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK- 135
LI GA+VN+ D G TPLH A+ + L ++GA +
Sbjct: 69 IVDFLITAGANVNSPDSHGWTPLHCAASCND-------TVICMA-LVQHGAAIFATTLSD 120
Query: 136 GLTP 139
G T
Sbjct: 121 GATA 124
Score = 44.2 bits (105), Expect = 7e-06
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
+ ++ D + + +G T LH + I+D L GA++++ ++
Sbjct: 36 VVQQAVKEMNDPSQPNEEGITALHNAICGA---------NYSIVDFLITAGANVNSPDSH 86
Query: 136 GLTP 139
G TP
Sbjct: 87 GWTP 90
Score = 39.2 bits (92), Expect = 4e-04
Identities = 7/70 (10%), Positives = 15/70 (21%), Gaps = 23/70 (32%)
Query: 79 KLLIRCGADVNAKD---YQGNTPLHIIATY------ERAISDFQTLHTIILDLTENGAHM 129
+ ++R L A ++A+
Sbjct: 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK--------------EMNDP 47
Query: 130 DTVNNKGLTP 139
N +G+T
Sbjct: 48 SQPNEEGITA 57
Score = 35.3 bits (82), Expect = 0.006
Identities = 3/63 (4%), Positives = 9/63 (14%), Gaps = 9/63 (14%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
L + + L + + + +
Sbjct: 138 CATYLADVEQSMGLMNSGAVYALWDYSAEF---------GDELSFREGESVTVLRRDGPE 188
Query: 137 LTP 139
T
Sbjct: 189 ETD 191
Score = 34.5 bits (80), Expect = 0.011
Identities = 3/23 (13%), Positives = 4/23 (17%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHI 101
V +D T
Sbjct: 172 SFREGESVTVLRRDGPEETDWWW 194
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 46.8 bits (112), Expect = 9e-07
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 14/69 (20%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA------HMD 130
+ L+ G D +D++GNTPLH+ + LT++ +
Sbjct: 60 IAEALLGAGCDPELRDFRGNTPLHLACEQGC--------LASVGVLTQSCTTPHLHSILK 111
Query: 131 TVNNKGLTP 139
N G T
Sbjct: 112 ATNYNGHTC 120
Score = 46.4 bits (111), Expect = 1e-06
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
LL++CGADVN YQG +P +
Sbjct: 166 LVSLLLKCGADVNRVTYQGYSPYQL 190
Score = 46.0 bits (110), Expect = 2e-06
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 77 TTKLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
+LL+ GADVNA++ G T LH+ + ++ L + GA ++ V +
Sbjct: 132 IVELLVSLGADVNAQEPCNGRTALHLAVDLQN--------PDLVSLLLKCGADVNRVTYQ 183
Query: 136 GLTP 139
G +P
Sbjct: 184 GYSP 187
Score = 44.8 bits (107), Expect = 4e-06
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
+ + A +N ++ TPLH+ + I L G + + +G T
Sbjct: 29 RQVKGDLAFLNFQNNLQQTPLHLAVITNQ--------PEIAEALLGAGCDPELRDFRGNT 80
Query: 139 P 139
P
Sbjct: 81 P 81
Score = 35.2 bits (82), Expect = 0.007
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 90 AKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
G++ LH+ +E +I + + A ++ NN TP
Sbjct: 3 QLTEDGDSFLHLAIIHEEK----ALTMEVIRQVKGDLAFLNFQNNLQQTP 48
Score = 31.4 bits (72), Expect = 0.12
Identities = 1/25 (4%), Positives = 5/25 (20%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI 101
+ L + + +
Sbjct: 199 IQQQLGQLTLENLQMLPESEDEESY 223
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 46.1 bits (110), Expect = 1e-06
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD-LTENGAHMDTVNNK 135
+ +I D + + +G T LH HT I+ L + G +++ ++
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAG---------HTEIVKFLVQFGVNVNAADSD 102
Query: 136 GLTP 139
G TP
Sbjct: 103 GWTP 106
Score = 45.3 bits (108), Expect = 2e-06
Identities = 25/140 (17%), Positives = 40/140 (28%), Gaps = 33/140 (23%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATY-----------------ERAISDFQT---LH 116
K L++ G +VNA D G TPLH A+ SD QT
Sbjct: 85 IVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC 144
Query: 117 T--------IILDLTENGAHMDTVNNKGLTP-IQATTTGVADLILRTLTKINLKCLAAKV 167
L M +N + +L ++ + + +
Sbjct: 145 EEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDED 204
Query: 168 ITQNNIT----YKGLVPHDL 183
+ +G VP +L
Sbjct: 205 EIEWWWARLNDKEGYVPRNL 224
Score = 40.3 bits (95), Expect = 1e-04
Identities = 8/63 (12%), Positives = 14/63 (22%), Gaps = 9/63 (14%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
T I G V L + + + N++G
Sbjct: 20 TGSERIAHGMRVKFNPL-PLALLLDSSLEGE-------FDLVQR-IIYEVDDPSLPNDEG 70
Query: 137 LTP 139
+T
Sbjct: 71 ITA 73
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 45.9 bits (110), Expect = 1e-06
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 77 TTKLLIRCG-ADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
+LL G + VN +D QG TPL +L + + GA D V+NK
Sbjct: 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGH-------GDAAVLLVEKYGAEYDLVDNK 207
Query: 136 GLTPIQ-ATTTGVADLIL 152
G A V L
Sbjct: 208 GAKAEDVALNEQVKKFFL 225
Score = 44.4 bits (106), Expect = 6e-06
Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 77 TTKLLI--RCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNN 134
K L D+N QG T LH+ + + L ENGA + +
Sbjct: 87 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW--------FEVSQFLIENGASVRIKDK 138
Query: 135 KGLTP 139
P
Sbjct: 139 FNQIP 143
Score = 43.2 bits (103), Expect = 1e-05
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 11/66 (16%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGA---HMDTVN 133
+LL + + KD G PLH +++ L D +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQA-------HEITSF-LLSKMENVNLDDYPD 69
Query: 134 NKGLTP 139
+ G TP
Sbjct: 70 DSGWTP 75
Score = 42.0 bits (100), Expect = 4e-05
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
++ LI GA V KD PLH A+
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASV 150
Score = 36.7 bits (86), Expect = 0.002
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 21/72 (29%)
Query: 77 TTKLLIRCGADVNAKDYQ---GNTPLHIIATYERAISDFQTLHTIILDLTE------NGA 127
T L+ +VN DY G TP HI + L++ +
Sbjct: 51 ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN------------LEVVKSLYDRPLKP 98
Query: 128 HMDTVNNKGLTP 139
++ + N+G+T
Sbjct: 99 DLNKITNQGVTC 110
Score = 27.0 bits (61), Expect = 3.2
Identities = 7/45 (15%), Positives = 11/45 (24%), Gaps = 7/45 (15%)
Query: 95 GNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
N PLH + L + + + G P
Sbjct: 2 SNYPLHQACMENE-------FFKVQELLHSKPSLLLQKDQDGRIP 39
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 45.4 bits (107), Expect = 3e-06
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 80 LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
+I+ G ++AK GNT LH A Y + + L + A + TVN G T
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQ--------PDCLKLLLKGRALVGTVNEAGETA 262
Query: 140 IQ-ATTTGVAD 149
+ A +
Sbjct: 263 LDIARKKHHKE 273
Score = 35.0 bits (80), Expect = 0.009
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHI 101
KLL++ A V + G T L I
Sbjct: 243 KLLLKGRALVGTVNEAGETALDI 265
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 5e-06
Identities = 40/178 (22%), Positives = 62/178 (34%), Gaps = 57/178 (32%)
Query: 3 DNLV-----TSLYLLVILTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNY 57
NLV SLY L + + K S ++ RI FS KL ++R L
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI---PFSERKLKFSNR----FL------ 421
Query: 58 ETPVDT-FHTNDVCKFPC--AATTKL---LIRCGADVNAKDYQGNTPLHI--IATYERAI 109
PV + FH+ A+ + L++ NAKD + I T++
Sbjct: 422 --PVASPFHS------HLLVPASDLINKDLVKNNVSFNAKD------IQIPVYDTFDG-- 465
Query: 110 SDFQTLHTIILDLTENGAHM---DTVNNKGLTPIQAT---------TTGVADLILRTL 155
SD + L ++E V + T +AT +G+ L R
Sbjct: 466 SDLRVLSG---SISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK 520
Score = 28.9 bits (64), Expect = 1.5
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 15/47 (31%)
Query: 152 LRTLTKINLKCLAAKVITQNNITYKGLVPHDLESFIELHGTALDKTF 198
R LT ++ ++ + LVP F + L + F
Sbjct: 6 TRPLT-----------LSHGSLEHVLLVPTAS--FF--IASQLQEQF 37
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 44.8 bits (107), Expect = 5e-06
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
L+ GA N + PLH AT E + + L +G ++KG
Sbjct: 46 LVCTLLNAGALKNLLE--NEFPLHQAATLED-------TKIVKI-LLFSGLDDSQFDDKG 95
Query: 137 LTP 139
T
Sbjct: 96 NTA 98
Score = 42.5 bits (101), Expect = 3e-05
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 11/65 (16%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNK 135
K+L+ G D + D +GNT L+ A + + + +
Sbjct: 77 IVKILLFSGLDDSQFDDKGNTALY-YAVDSG--------NMQTVKLFVKKNWRLMFYGKT 127
Query: 136 GL-TP 139
G T
Sbjct: 128 GWKTS 132
Score = 41.0 bits (97), Expect = 8e-05
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAIS 110
K++I + + Y + + + IS
Sbjct: 236 IAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIIS 269
Score = 38.3 bits (90), Expect = 7e-04
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
LL+ N + P +A + I ++ L + ++ + N +
Sbjct: 176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIE-------MLQALFKYDINIYSANLEN 228
Score = 37.1 bits (87), Expect = 0.002
Identities = 6/63 (9%), Positives = 15/63 (23%), Gaps = 9/63 (14%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
+ + +HI +++ L + +T N+
Sbjct: 144 IVSYFLSEIPS-TFDLAILLSCIHITIKNGH--------VDMMILLLDYMTSTNTNNSLL 194
Query: 137 LTP 139
P
Sbjct: 195 FIP 197
Score = 30.2 bits (69), Expect = 0.37
Identities = 5/65 (7%), Positives = 15/65 (23%), Gaps = 17/65 (26%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHI-IATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
+ L + ++ + + + IA + E + +
Sbjct: 210 MLQALFKYDINIYSANLENVLLDDAEIAKM----------------IIEKHVEYKSDSYT 253
Query: 136 GLTPI 140
I
Sbjct: 254 KDLDI 258
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 43.3 bits (103), Expect = 8e-06
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 74 CAATTKLLIRCGADVNAKDYQ-GNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV 132
+LL GAD++ +D + G T LH+ A Y R + L E GA ++
Sbjct: 88 SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR-------PEVVEA-LVELGADIEVE 139
Query: 133 NNKGLTP 139
+ +GLT
Sbjct: 140 DERGLTA 146
Score = 42.9 bits (102), Expect = 1e-05
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATY 105
+ L+ GAD+ +D +G T L +
Sbjct: 125 VVEALVELGADIEVEDERGLTALELAREI 153
Score = 32.5 bits (75), Expect = 0.056
Identities = 11/64 (17%), Positives = 16/64 (25%), Gaps = 12/64 (18%)
Query: 76 ATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
+ ADV ++ TP A L +D V+
Sbjct: 28 PSWVPSSYIAADVVSE---YETPWWTAARKA---------DEQALSQLLEDRDVDAVDEN 75
Query: 136 GLTP 139
G T
Sbjct: 76 GRTA 79
Score = 27.1 bits (61), Expect = 3.4
Identities = 7/56 (12%), Positives = 14/56 (25%), Gaps = 13/56 (23%)
Query: 85 GADVNAKDYQGNTPLHIIATYERAISDFQTLHT-IILDLTENGAHMDTVNNKGLTP 139
+ +G I H+ + + A V ++ TP
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDG---------HSPSWVPSSYIAAD---VVSEYETP 47
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 44.2 bits (104), Expect = 9e-06
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 20/102 (19%)
Query: 40 LSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPL 99
L+ +++ LHL V L++ +++ + +G+T L
Sbjct: 162 LANGHEPDETALHLAVRSVDR------------TSLHIVDFLVQNSGNLDKQTGKGSTAL 209
Query: 100 HIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ 141
H + A + L A ++ N G TP+
Sbjct: 210 HYCCLTDNA--------ECLKLLLRGKASIEIANESGETPLD 243
Score = 36.5 bits (84), Expect = 0.003
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 15/54 (27%)
Query: 48 QSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHI 101
+ LH C + C KLL+R A + + G TPL I
Sbjct: 206 STALHYCCLTD------------NAECL---KLLLRGKASIEIANESGETPLDI 244
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 43.7 bits (104), Expect = 1e-05
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 74 CAATTKLLIRCGADVNAKD-YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTV 132
+LL GAD++ +D G T LH+ A Y R + L E GA ++
Sbjct: 89 SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR-------PEVVEA-LVELGADIEVE 140
Query: 133 NNKGLTP 139
+ +GLT
Sbjct: 141 DERGLTA 147
Score = 42.6 bits (101), Expect = 2e-05
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 74 CAATTKLLIRCGADVNAKDYQGNTPLHIIATY 105
+ L+ GAD+ +D +G T L +
Sbjct: 123 RPEVVEALVELGADIEVEDERGLTALELAREI 154
Score = 33.7 bits (78), Expect = 0.025
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIA 103
+ A+ AKDY+ L
Sbjct: 214 CEWVKGVHVAEDVAKDYE--DGLEYAV 238
Score = 33.3 bits (77), Expect = 0.028
Identities = 11/64 (17%), Positives = 16/64 (25%), Gaps = 12/64 (18%)
Query: 76 ATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
+ ADV ++ TP A L +D V+
Sbjct: 29 PSWVPSSYIAADVVSE---YETPWWTAARKA---------DEQALSQLLEDRDVDAVDEN 76
Query: 136 GLTP 139
G T
Sbjct: 77 GRTA 80
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 42.6 bits (100), Expect = 4e-05
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 12/106 (11%)
Query: 80 LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
+I+ G ++AK GNT LH A Y + + L + A + TVN G T
Sbjct: 192 FIIQNGGHLDAKAADGNTALHYAALYNQP--------DCLKLLLKGRALVGTVNEAGETA 243
Query: 140 IQATTTGVADLILRTLTKINLKCLAAKVITQNNITYKGLVPHDLES 185
+ L + A + ++ Y ++ + S
Sbjct: 244 LDIARKKHHKECEELLEQAQAGTFAFPL----HVDYSWVISTENLS 285
Score = 27.6 bits (61), Expect = 3.3
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 15/51 (29%)
Query: 51 LHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHI 101
LH Y P C KLL++ A V + G T L I
Sbjct: 211 LHYAALYNQP------------DCL---KLLLKGRALVGTVNEAGETALDI 246
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 41.7 bits (97), Expect = 7e-05
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 80 LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
L++ GA+VN D G PLH + + GA + +++G P
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGH--------TGLACLFLKRGADLGARDSEGRDP 304
Query: 140 IQ-ATTTGVADLI 151
+ A T AD++
Sbjct: 305 LTIAMETANADIV 317
Score = 32.8 bits (74), Expect = 0.054
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHI 101
L ++ GAD+ A+D +G PL I
Sbjct: 285 CLFLKRGADLGARDSEGRDPLTI 307
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 7e-04
Identities = 30/227 (13%), Positives = 70/227 (30%), Gaps = 66/227 (29%)
Query: 1 MEDNLVTSLYL-LVIL-------TKVIK----NISEEEEYRIYKLVFSLNKLSVASRQNQ 48
+E ++ L + T ++ ++ + + + V L+K S+ +Q +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV---VNKLHKYSLVEKQPK 422
Query: 49 ----SLLHLCVNYETPVD---TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHI 101
S+ + + + ++ H + ++ D P ++
Sbjct: 423 ESTISIPSIYLELKVKLENEYALH-------------RSIVDHYNIPKTFDSDDLIPPYL 469
Query: 102 ---IATY--------ERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTT--GVA 148
++ E + LD + K I+ +T +
Sbjct: 470 DQYFYSHIGHHLKNIEHP-ERMTLFRMVFLDF-------RFLEQK----IRHDSTAWNAS 517
Query: 149 DLILRTLTKINL-KCLAAKVITQNNITYKGLVPHDLESFIELHGTAL 194
IL TL ++ K I N+ Y+ LV + + F+ L
Sbjct: 518 GSILNTLQQLKFYK----PYICDNDPKYERLV-NAILDFLPKIEENL 559
Score = 26.4 bits (57), Expect = 8.1
Identities = 3/21 (14%), Positives = 11/21 (52%)
Query: 168 ITQNNITYKGLVPHDLESFIE 188
++ YK ++ ++F++
Sbjct: 11 TGEHQYQYKDILSVFEDAFVD 31
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 34.2 bits (78), Expect = 0.023
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHI 101
LL+ V + +
Sbjct: 112 CLLLTSDEIVKVIQAENYQAFRL 134
Score = 32.6 bits (74), Expect = 0.076
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 82 IRCGADVNAKDYQGNTPLHI 101
I+ A N L +
Sbjct: 306 IKALAPTATIPGDANELLRL 325
Score = 31.8 bits (72), Expect = 0.12
Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 11/106 (10%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATY--ERAISDFQTLHTIILDLTENGAHMDTVNN 134
L+ C + + R ++ + +H +G D V
Sbjct: 214 VINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDG-VFDLVTK 272
Query: 135 ----KGLTP----IQATTTGVADLILRTLTKINLKCLAAKVITQNN 172
+G I+ + D I L+ +K LA +
Sbjct: 273 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD 318
Score = 30.3 bits (68), Expect = 0.34
Identities = 1/25 (4%), Positives = 3/25 (12%), Gaps = 2/25 (8%)
Query: 79 KLLIRCGADVNAKD--YQGNTPLHI 101
L + +
Sbjct: 145 NRLCELAPTEIMAMIQAENYHAFRL 169
Score = 28.4 bits (63), Expect = 1.6
Identities = 5/52 (9%), Positives = 14/52 (26%)
Query: 89 NAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPI 140
++ QG L + + + + + A T+ +
Sbjct: 272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELL 323
Score = 27.2 bits (60), Expect = 3.5
Identities = 3/28 (10%), Positives = 3/28 (10%), Gaps = 2/28 (7%)
Query: 79 KLLIRCGADVNAKDYQ--GNTPLHIIAT 104
L Q A
Sbjct: 180 NRLCELAPTEATAMIQAENYYAFRWAAV 207
>3v7i_A Putative polyketide synthase; type III polyketide synthase,
acyltransferase, transferase,; 2.90A {Streptomyces
coelicolor}
Length = 413
Score = 33.0 bits (75), Expect = 0.054
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 2/77 (2%)
Query: 53 LCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDF 112
L V E T+ D A V + + L + A + +
Sbjct: 222 LVVISEALSTTYQPADDTLESLIVRLLFADTAVAAVVTGRPRPESVLRLDAAWHHTLPG- 280
Query: 113 QTLHTIILDLTENGAHM 129
T L+ +G H
Sbjct: 281 -TRDLHRLETRADGTHF 296
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa
form; zymogen, NTN-hydrolase, penicillin biosynthesis;
1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Length = 357
Score = 29.4 bits (65), Expect = 0.74
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 96 NTPLHIIATYERAISDFQTLHTIILDLTENGAHM 129
N P I YE S TL II D A +
Sbjct: 295 NYPFSICRAYEEGKSRGATLFNIIYDHARREATV 328
>2xsg_A Ccman5; hydrolase, mannosidase; HET: B3P; 2.00A {Cellulosimicrobium
cellulans}
Length = 774
Score = 27.8 bits (62), Expect = 2.7
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 7/37 (18%)
Query: 169 TQNNI-TYKGLVPHDLESFIELHG------TALDKTF 198
Q + Y +D+++ +E G + F
Sbjct: 535 YQGTLWQYHWYDAYDMDALVEAMGGHEAARLGMRHMF 571
>2ww2_A Mannosidase, alpha-1,2-mannosidase; hydrolase, glycoside hydrolase
family 92, BT2199; HET: SWA; 1.90A {Bacteroides
thetaiotaomicron} PDB: 2wvy_A*
Length = 737
Score = 27.6 bits (62), Expect = 3.1
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 171 NNITYKGLVPHDLESFIELHG------TALDKTF 198
++ + V HD E EL G LD F
Sbjct: 518 SSWHWTWSVFHDPEGLSELMGGHEPMIARLDSMF 551
>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase
family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A
{Bacteroides thetaiotaomicron} PDB: 2wvz_A* 2ww0_A*
2ww1_A* 2ww3_A* 2wvx_B* 2wzs_A*
Length = 744
Score = 27.3 bits (61), Expect = 3.6
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 178 LVPHDLESFIELHG------TALDKTF 198
V HD + I+L G T +D F
Sbjct: 523 SVFHDPQGLIDLMGGKEMFVTMMDSVF 549
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain,
PSI-2, NYSGXRC, structur genomics, protein structure
initiative; 2.00A {Ralstonia solanacearum}
Length = 335
Score = 26.9 bits (60), Expect = 4.6
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 14/42 (33%)
Query: 125 NGAHMDTVNNKGLT----------PIQATTT----GVADLIL 152
GA + + GL P++AT G D+++
Sbjct: 34 RGATLQALQTAGLRLTEDGATHTLPVRATHDAAALGEQDVVI 75
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein
biosynthesis, NUC binding, amino acid-binding,
ATP-binding, metal-binding; HET: G5A EPE; 1.90A
{Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A*
3hxw_A* 3hxx_A* 3hxy_A*
Length = 441
Score = 26.4 bits (59), Expect = 6.6
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 16/55 (29%)
Query: 56 NYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAIS 110
NY+ D F T LI+ A V N L +IA + R+ +
Sbjct: 253 NYDI--DLFRT--------------LIQAVAKVTGATDLSNKSLRVIADHIRSCA 291
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.384
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,792,604
Number of extensions: 152799
Number of successful extensions: 823
Number of sequences better than 10.0: 1
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 309
Length of query: 199
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 110
Effective length of database: 4,216,824
Effective search space: 463850640
Effective search space used: 463850640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)