RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8420
(199 letters)
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 48.4 bits (114), Expect = 1e-07
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 70 CKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHM 129
K L++ GA N + + TPLH+ A + L +N A +
Sbjct: 8 SFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT--------EVAKYLLQNKAKV 59
Query: 130 DTVNNKGLTPI 140
+ TP+
Sbjct: 60 NAKAKDDQTPL 70
Score = 40.3 bits (93), Expect = 7e-05
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKG 136
LL++ GA N G TPL I ++ ++ +T+ + + +
Sbjct: 345 IVTLLLKNGASPNEVSSDGTTPLAIAKRLGY-----ISVTDVLKVVTDETSFVLVSDKHR 399
Query: 137 LT 138
++
Sbjct: 400 MS 401
Score = 40.0 bits (92), Expect = 9e-05
Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 8/88 (9%)
Query: 54 CVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQ 113
T + K+ +LL+ A NA G TPLH+ +
Sbjct: 124 SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL----- 178
Query: 114 TLHTIILDLTENGAHMDTVNNKGLTPIQ 141
I+ L G + G TP+
Sbjct: 179 ---DIVKLLLPRGGSPHSPAWNGYTPLH 203
Score = 39.6 bits (91), Expect = 1e-04
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 70 CKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATY 105
+ K L++ A VNAK TPLH A
Sbjct: 41 ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI 76
Score = 36.1 bits (82), Expect = 0.002
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 47 NQSLLHLCVNYETPVDTFHT--NDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIAT 104
L+ V + +T + + K L++ ADVNAK G +PLH A
Sbjct: 280 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ 339
Query: 105 YERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ 141
I+ L +NGA + V++ G TP+
Sbjct: 340 QGH--------TDIVTLLLKNGASPNEVSSDGTTPLA 368
Score = 34.6 bits (78), Expect = 0.005
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 14/104 (13%)
Query: 43 ASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAA------TTKLLIRCGADVNAKDYQGN 96
A + L + + + N + A KLL+ G ++ + G
Sbjct: 140 AKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGY 199
Query: 97 TPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPI 140
TPLHI A + + L + G + + +G+TP+
Sbjct: 200 TPLHIAAKQNQ--------VEVARSLLQYGGSANAESVQGVTPL 235
Score = 26.9 bits (58), Expect = 2.1
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 97 TPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ-ATTTG---VADLIL 152
TPLH+ + I+ +L + GA + N K TP+ A G VA +L
Sbjct: 2 TPLHVASFMGHL--------PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 53
Query: 153 RTLTKINLK 161
+ K+N K
Sbjct: 54 QNKAKVNAK 62
Score = 25.3 bits (54), Expect = 5.8
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 70 CKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHM 129
+ A LL+ A+ N + G TPLH++A + L ++G +
Sbjct: 239 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH--------VPVADVLIKHGVMV 290
Query: 130 DTVNNKGLTPI 140
D G TP+
Sbjct: 291 DATTRMGYTPL 301
Score = 24.9 bits (53), Expect = 7.0
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 70 CKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHM 129
K + L++ G NA+ QG TPLH+ A A ++ L A+
Sbjct: 206 AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA--------EMVALLLSKQANG 257
Query: 130 DTVNNKGLTPI 140
+ N GLTP+
Sbjct: 258 NLGNKSGLTPL 268
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 47.7 bits (112), Expect = 2e-07
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 56 NYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTL 115
N A T LL+ GADVN + +G TPL + + L
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH-------L 232
Query: 116 HTIILDLTENGAHMDTVNNKGLTPIQ 141
+ L + ++ ++ G T +
Sbjct: 233 GLVQRLLEQEHIEINDTDSDGKTALL 258
Score = 39.6 bits (91), Expect = 1e-04
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN 133
+LL + ++N D G T L + + I L + GA D +
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKL--------KKIAELLCKRGASTDCGD 283
Score = 35.7 bits (81), Expect = 0.002
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 16/64 (25%)
Query: 43 ASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKD-YQGNTPLHI 101
A+ ++ LL V DV + L+ GA+VN ++ G TPLH
Sbjct: 1 AAVEDNHLLIKAVQN---------EDV------DLVQQLLEGGANVNFQEEEGGWTPLHN 45
Query: 102 IATY 105
Sbjct: 46 AVQM 49
Score = 35.3 bits (80), Expect = 0.002
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 80 LLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTP 139
LL GADVNA D G L D + I L ++GA ++ +G TP
Sbjct: 167 LLDEMGADVNACDNMGRNALIHALLSS----DDSDVEAITHLLLDHGADVNVRGERGKTP 222
Query: 140 IQ 141
+
Sbjct: 223 LI 224
Score = 28.0 bits (61), Expect = 0.74
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 70 CKFPCAATTKLLIRCGADVNAKD 92
+ +LL + GA + D
Sbjct: 261 VELKLKKIAELLCKRGASTDCGD 283
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 45.5 bits (106), Expect = 1e-06
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 81 LIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPI 140
LI+ DVN KDY G TPLH A + + L EN M+ VN G T
Sbjct: 218 LIQARYDVNIKDYDGWTPLHAAAHWGK--------EEACRILVENLCDMEAVNKVGQTAF 269
Query: 141 QATTTGVADLILRTLTKINL 160
+ + K NL
Sbjct: 270 DVADEDILGYLEELQKKQNL 289
Score = 41.6 bits (96), Expect = 3e-05
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 44 SRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAA------TTKLLIRCGADVNAKDYQGNT 97
++ +L L + V+ + AA ++L+ D+ A + G T
Sbjct: 208 AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT 267
Query: 98 PLHIIA 103
+
Sbjct: 268 AFDVAD 273
Score = 36.6 bits (83), Expect = 0.001
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATY 105
L+ GAD+N + G T LH
Sbjct: 57 LRLLERGADINYANVDGLTALHQACID 83
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 45.0 bits (105), Expect = 1e-06
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 52 HLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISD 111
+ VN + + K L+ GA VNA + G TPLH A+ R
Sbjct: 60 GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR---- 115
Query: 112 FQTLHTIILDLTENGAHMDTVNNKGLTPI 140
H I + L E GA+ D ++ T +
Sbjct: 116 ----HEIAVMLLEGGANPDAKDHYEATAM 140
Score = 40.3 bits (93), Expect = 5e-05
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 25/100 (25%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHT------------------- 117
+L+ GA+ +AKD+ T +H A L+
Sbjct: 118 IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 177
Query: 118 ------IILDLTENGAHMDTVNNKGLTPIQATTTGVADLI 151
L GA + N + TP+Q G+ ++
Sbjct: 178 DEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLIL 217
Score = 37.3 bits (85), Expect = 5e-04
Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 25/87 (28%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISD-------------------------FQ 113
+ ++ + D T LH +
Sbjct: 21 ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 80
Query: 114 TLHTIILDLTENGAHMDTVNNKGLTPI 140
I+ L GA ++ VN G TP+
Sbjct: 81 GRDEIVKALLGKGAQVNAVNQNGCTPL 107
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 44.1 bits (102), Expect = 3e-06
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 43 ASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAA------TTKLLIRCGADVNAKDYQGN 96
+ S++ L + + V+ + A+ + L+R GAD + K+ +
Sbjct: 152 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND 211
Query: 97 TPLHIIATYER 107
TPL + +
Sbjct: 212 TPLMVARSRRV 222
Score = 36.0 bits (81), Expect = 0.002
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHI 101
L + G +++ + TPLH+
Sbjct: 24 NLFQQGGRELDIYNNLRQTPLHL 46
Score = 33.7 bits (75), Expect = 0.009
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 95 GNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPI 140
G+TPLHI + +H ++ + G +D NN TP+
Sbjct: 3 GDTPLHIAVVQ----GNLPAVHRLVNLFQQGGRELDIYNNLRQTPL 44
Score = 31.0 bits (68), Expect = 0.074
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 12/110 (10%)
Query: 46 QNQSLLHLCVNYETPVDTFHTNDV---CKFPCAATTKLLIRCGADVNAKDYQGNTPLHII 102
Q LL + + + + + + +LL++ GA+VNA+ Y G++ LH
Sbjct: 125 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 184
Query: 103 ATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ-ATTTGVADLI 151
+ ++ L +GA N TP+ A + V D++
Sbjct: 185 SGRGLL--------PLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 43.9 bits (102), Expect = 4e-06
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 65 HTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATY 105
+ + A+ +LL++ GAD A+ Y G TPL
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235
Score = 34.7 bits (78), Expect = 0.005
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 70 CKFPCAATTKLLIRCGAD---VNAKDYQGNTPLHIIATY 105
L+ A ++ ++ G T LH+ A
Sbjct: 17 VIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL 55
Score = 25.4 bits (54), Expect = 4.9
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 11/55 (20%)
Query: 89 NAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVN---NKGLTPI 140
G+T LH+ ++ + L A + ++ + G T +
Sbjct: 3 GYVTEDGDTALHLAVIHQHE--------PFLDFLLGFSAGHEYLDLQNDLGQTAL 49
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 43.5 bits (101), Expect = 6e-06
Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 10/127 (7%)
Query: 15 LTKVIKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPC 74
L +I K + + +QN+ + E+ + +
Sbjct: 181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 240
Query: 75 AATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNN 134
K +I +NA+D G+T L+I A +I+ L + GA N
Sbjct: 241 NLDLKWII--ANMLNAQDSNGDTCLNIAARLGNI--------SIVDALLDYGADPFIANK 290
Query: 135 KGLTPIQ 141
GL P+
Sbjct: 291 SGLRPVD 297
Score = 29.6 bits (65), Expect = 0.25
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLT 138
K L++ G++ D G + L A D T ++ L D++N L
Sbjct: 124 KHLVKHGSNRLYGDNMGESCLV-KAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH 182
Query: 139 PI 140
I
Sbjct: 183 HI 184
Score = 28.5 bits (62), Expect = 0.46
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 79 KLLIRCGADVNAK-DYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGL 137
++N D GNTPLH + + ++ L ++G++ +N G
Sbjct: 90 DAFPNTQLNLNIPVDEHGNTPLHWLTSIANL--------ELVKHLVKHGSNRLYGDNMGE 141
Query: 138 TPIQA 142
+ +
Sbjct: 142 SCLVK 146
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 41.7 bits (96), Expect = 1e-05
Identities = 7/50 (14%), Positives = 15/50 (30%)
Query: 52 HLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHI 101
H + + D + +K L+ A+ D+ P +
Sbjct: 146 HANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDV 195
Score = 38.6 bits (88), Expect = 2e-04
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 79 KLLIRCGADVNAK-DYQGNTPLHIIATYERA 108
L+ GA++NA D G T LH+ A + RA
Sbjct: 6 SDLLAQGAELNATMDKTGETSLHLAARFARA 36
Score = 33.2 bits (74), Expect = 0.012
Identities = 19/115 (16%), Positives = 29/115 (25%), Gaps = 25/115 (21%)
Query: 52 HLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISD 111
+N T + + LI AD+NA D G T LH A +
Sbjct: 80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAV 139
Query: 112 FQTLHT-------------------------IILDLTENGAHMDTVNNKGLTPIQ 141
L L +N A+ + ++ P
Sbjct: 140 NILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRD 194
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 41.3 bits (95), Expect = 3e-05
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 77 TTKLLIRCGADVNAKDYQGNTPLHIIA 103
LI+ GA V A D +T +
Sbjct: 236 VVMYLIQQGASVEAVDATDHTARQLAQ 262
Score = 35.9 bits (81), Expect = 0.002
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 76 ATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNK 135
A T+ + R ++ T LH IA+ A + + GA ++ ++
Sbjct: 15 AITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD 73
Query: 136 GLTPIQ 141
TP+
Sbjct: 74 ENTPLM 79
Score = 35.5 bits (80), Expect = 0.002
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 42 VASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHI 101
+ R N+++LH + + + + K I GADVNA D NTPL +
Sbjct: 28 IDPRHNRTVLHWIASNSSA-------EKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 80
Query: 102 IATY 105
Sbjct: 81 AVLA 84
Score = 35.1 bits (79), Expect = 0.003
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 12/95 (12%)
Query: 63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILDL 122
T L+ G++ + +D G TP+ + A R +++ L
Sbjct: 189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR--------IEVVMYL 240
Query: 123 TENGAHMDTVNNKGLTPIQ-ATTTG---VADLILR 153
+ GA ++ V+ T Q A + D+ R
Sbjct: 241 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 40.2 bits (92), Expect = 6e-05
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 63 TFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYE 106
T + + + A L+ + GA+ + D +G + +
Sbjct: 174 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 217
Score = 38.6 bits (88), Expect = 2e-04
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATY 105
+LL + + KD G PLH ++
Sbjct: 18 ELLHSKPSLLLQKDQDGRIPLHWSVSF 44
Score = 34.0 bits (76), Expect = 0.007
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 88 VNAKDYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQ-ATTTG 146
VN +D QG TPL +L + + GA D V+NKG A
Sbjct: 165 VNWQDKQGWTPLFHALAEGH-------GDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 217
Query: 147 VADLIL 152
V L
Sbjct: 218 VKKFFL 223
Score = 27.9 bits (60), Expect = 0.80
Identities = 7/45 (15%), Positives = 12/45 (26%), Gaps = 7/45 (15%)
Query: 96 NTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPI 140
N PLH + L + + + G P+
Sbjct: 1 NYPLHQACMENE-------FFKVQELLHSKPSLLLQKDQDGRIPL 38
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 36.4 bits (82), Expect = 0.001
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 79 KLLIRCGADVNAKDYQGNTPLH 100
+ + A +N ++ TPLH
Sbjct: 23 RQVKGDLAFLNFQNNLQQTPLH 44
Score = 33.7 bits (75), Expect = 0.009
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 95 GNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPI 140
G++ LH+ +E + +I + + A ++ NN TP+
Sbjct: 2 GDSFLHLAIIHE----EKALTMEVIRQVKGDLAFLNFQNNLQQTPL 43
Score = 32.6 bits (72), Expect = 0.019
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 82 IRCGADVNAKDYQGNTPLHIIA 103
++CGADVN YQG +P +
Sbjct: 165 LKCGADVNRVTYQGYSPYQLTW 186
Score = 27.9 bits (60), Expect = 0.65
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 93 YQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHMDTVNNKGLTPIQATTTGVADLIL 152
G T LH+ + L GA ++ V +G +P Q T + I
Sbjct: 143 CNGRTALHLAVDLQNPDLVSLLLK--------CGADVNRVTYQGYSPYQLTWGRPSTRIQ 194
Query: 153 RTLTKINLKCL 163
+ L ++ L+ L
Sbjct: 195 QQLGQLTLENL 205
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 36.4 bits (83), Expect = 0.001
Identities = 14/127 (11%), Positives = 41/127 (32%), Gaps = 15/127 (11%)
Query: 19 IKNISEEEEYRIYKLVFSLNKLSVASRQNQSLLHLCVNYETPVDTFHTNDVCKFPCAATT 78
++ I +++ S N+LS+ + + +H+ + ++ + A
Sbjct: 16 LRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYY--AHYN 73
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIATYERAISDFQTLHTIILD----LTENGAHMDTVNN 134
+ + +D + K + + A T + LD L + + +
Sbjct: 74 RNAKQLWSDAHKKGIKSEVICFVAA---------ITGCSSALDTLCLLLTSDEIVKVIQA 124
Query: 135 KGLTPIQ 141
+ +
Sbjct: 125 ENYQAFR 131
Score = 32.6 bits (73), Expect = 0.028
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 79 KLLIRCGADVNAKDYQGNTPLHIIA 103
LL+ V + + A
Sbjct: 110 CLLLTSDEIVKVIQAENYQAFRLAA 134
Score = 26.8 bits (58), Expect = 2.2
Identities = 2/38 (5%), Positives = 5/38 (13%), Gaps = 2/38 (5%)
Query: 70 CKFPCAATTKLLIRCGADVNAKD--YQGNTPLHIIATY 105
+ L + + A
Sbjct: 134 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN 171
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 32.7 bits (73), Expect = 0.010
Identities = 11/57 (19%), Positives = 14/57 (24%), Gaps = 1/57 (1%)
Query: 52 HLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQ-GNTPLHIIATYER 107
+ VN + K L+ GA V A Y T E
Sbjct: 57 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEE 113
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 32.9 bits (73), Expect = 0.011
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 64 FHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIA 103
+ + +LLI+ GADV+ + T I
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISI 141
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 30.6 bits (67), Expect = 0.073
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 76 ATTKLLIRCGADVNAKDYQGNTPLH 100
L++ +VNA++ G T L
Sbjct: 15 EQLTSLLQNNVNVNAQNGFGRTALQ 39
Score = 26.8 bits (57), Expect = 1.5
Identities = 6/56 (10%), Positives = 18/56 (32%)
Query: 52 HLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATYER 107
+ + + L+ ++V ++++G+T + Y R
Sbjct: 90 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 145
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 30.2 bits (66), Expect = 0.088
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 86 ADVNAKDYQGNTPLHIIATY 105
+D++ +D +G TPL +
Sbjct: 124 SDLHRRDARGLTPLELALQR 143
Score = 28.2 bits (61), Expect = 0.41
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 79 KLLIRCGADVNAKDYQGNTPLH 100
+LL R +A + G T L
Sbjct: 20 RLLHRELVHPDALNRFGKTALQ 41
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 27.6 bits (60), Expect = 0.79
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 11/57 (19%)
Query: 79 KLLIRCGADVNAK------DYQGNTPLHIIATYERAISDFQTLHTIILDLTENGAHM 129
G D+ K T LH+ S +T I+ L +N ++
Sbjct: 23 LQAYADGVDLTEKIPLANGHEPDETALHL-----AVRSVDRTSLHIVDFLVQNSGNL 74
Score = 26.5 bits (57), Expect = 1.6
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 55 VNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHIIATY 105
++ +T + + C A KLL+R A + + G TPL I
Sbjct: 74 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 124
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 118
Score = 26.0 bits (55), Expect = 2.0
Identities = 11/50 (22%), Positives = 14/50 (28%)
Query: 52 HLCVNYETPVDTFHTNDVCKFPCAATTKLLIRCGADVNAKDYQGNTPLHI 101
+N + KLL+ GAD K G T L
Sbjct: 58 GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEA 107
>d1ukfa_ d.3.1.10 (A:) Avirulence protein Avrpph3 {Pseudomonas
syringae pv. phaseolicola [TaxId: 319]}
Length = 188
Score = 24.5 bits (53), Expect = 8.8
Identities = 3/22 (13%), Positives = 6/22 (27%)
Query: 107 RAISDFQTLHTIILDLTENGAH 128
++ H + L H
Sbjct: 111 HDVAQSGRKHLLSLRFANVQGH 132
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.384
Gapped
Lambda K H
0.267 0.0395 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 661,737
Number of extensions: 27023
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 69
Length of query: 199
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,295,466
Effective search space: 152864988
Effective search space used: 152864988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)