BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8421
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GHL V+K L+ AGADVN K TPL A +G L++VK L+E GAD+N + + L
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 123
+AA GHL V+K L+ AGADVN K TPL A +G L++VK L+E GA
Sbjct: 73 HLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
GHL V+K L+ AGADVN K TPL A +G L++VK L+E GAD+N + + L
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Query: 137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
+AA GHL V+K L+ AGADVN K TPL A +G L++VK L+E GA
Sbjct: 73 HLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
TPL A +G L++VK L+E GAD+N + + L +AA GHL V+K L+ AGADV
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--GHLEVVKLLLEAGADV 61
Query: 93 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
N K TPL A +G L++VK L+E GAD+N + + L +AA GHL V+K
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--GHLEVVKL 119
Query: 153 LVHAGA 158
L+ AGA
Sbjct: 120 LLEAGA 125
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
TPL A +G L++VK L+E GAD+N + + L +AA G HL V+K L+ AGADV
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HLEVVKLLLEAGADV 61
Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
N K TPL A +G L++VK L+E GAD+N + + L +AA G
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN + T +TPL A Y G L+IV+ L++HGAD++ ++ + +
Sbjct: 24 AGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AAY GHL +++ L+ GADVN TPL A G L+IV+ L++HGAD+N
Sbjct: 84 LHLAAY--WGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
+ + + I+ G L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 81/136 (59%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN + T +TPL A Y G L+IV+ L++HGAD++ ++ + +
Sbjct: 24 AGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AAY GHL +++ L+ GADVN TPL A G L+IV+ L++HGAD+N
Sbjct: 84 LHLAAY--WGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + I+ G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N ++ + L +AAY +GHL +++ L+ GADV+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAY--SGHLEIVEVLLKHGADVDA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
S TPL A Y G L+IV+ L+++GAD+N + + L +AA G+L +++ L+
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAK--WGYLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
GADVN K T + +G D+ + L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N ++ + L +AAY +GHL +++ L+ GADV+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAY--SGHLEIVEVLLKHGADVDA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
S TPL A Y G L+IV+ L+++GAD+N + + L +AA G
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWG 124
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 50
G+L +++ L+ GADVN K T + +G D+ + L
Sbjct: 124 GYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 106/202 (52%), Gaps = 5/202 (2%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AGH+ + LV AGA+++ ++ Q TPL A + L+ VKYLI+ GA ++ + ++C
Sbjct: 21 AGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC 80
Query: 68 LMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
L +AA K GH V++ L+ G DVN TP+ A +D+VK L+ G+D+N
Sbjct: 81 LHLAAKK--GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN 138
Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
I ++ N CL AA+ G + + + L+ A D++ +PL A + R D V
Sbjct: 139 IRDNEENICLHWAAFSGC--VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196
Query: 187 IEHGADLNITNHYNNSCLMIAA 208
+ +D+ + N + L A+
Sbjct: 197 LSRDSDVTLKNKEGETPLQCAS 218
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 57 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 116
+N + N + A AGH+ + LV AGA+++ ++ Q TPL A + L+ VK
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 117 YLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAAC 175
YLI+ GA ++ + ++CL +AA K GH V++ L+ G DVN TP+ A
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKK--GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 176 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG-IDVGRV 217
+D+VK L+ G+D+NI ++ N CL AA+ G +D+ +
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 7/184 (3%)
Query: 29 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA 88
+ + +PL AA G +DI L++ GA+++ + + LM AA HL +K L+ A
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN--NHLEAVKYLIKA 66
Query: 89 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIA-AYKGAGH 146
GA V+ ST L A G ++V+YL+ +G D+N + + ++ A YK H
Sbjct: 67 GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK---H 123
Query: 147 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206
+ ++K L+ G+D+N ++ L A + G +DI + L+ DL+ N + +S L I
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
Query: 207 AAYK 210
AA +
Sbjct: 184 AARE 187
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N + + L +AA +G HL +++ L+ AGADVN
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--HLEIVEVLLKAGADVNA 63
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
K TPL A +G L+IV+ L++ GAD+N + + L +AA + GHL +++ L+
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE--GHLEIVEVLL 121
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
AGADVN K TP A +G DI + L
Sbjct: 122 KAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 4/149 (2%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN K TPL A +G L+IV+ L++ GAD+N + +
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 71
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA + GHL +++ L+ AGADVN K TPL A +G L+IV+ L++ GAD+N
Sbjct: 72 LHLAARE--GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHA 156
+ + + +A + GH + + L A
Sbjct: 130 QDKFGKTPFDLAIRE--GHEDIAEVLQKA 156
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN K TPL A +G L+IV+ L++ GAD+N + +
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 71
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA +G HL +++ L+ AGADVN K TPL A +G L+IV+ L++ GAD+N
Sbjct: 72 LHLAAREG--HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + +A +G
Sbjct: 130 QDKFGKTPFDLAIREG 145
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N + + L +AA +G HL +++ L+ AGADVN
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--HLEIVEVLLKAGADVNA 63
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
K TPL A +G L+IV+ L++ GAD+N + + L +AA +G
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 112
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 38 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 97
A +G D VK LIE+GAD+N ++ + L AA +G H ++K L+ GADVN
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEG--HKEIVKLLISKGADVNAKDS 68
Query: 98 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG 157
TPL A +G +IVK LI GAD+N + + L AA + GH ++K L+ G
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE--GHKEIVKLLISKG 126
Query: 158 ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 194
ADVN S TPL A G +IVK L + G L
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G+ +K L+ GADVN S TPL A +G +IVK LI GAD+N + + L
Sbjct: 15 GNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPL 74
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
AA + GH ++K L+ GADVN TPL A +G +IVK LI GAD+N +
Sbjct: 75 HYAAKE--GHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS 132
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158
+ + L +A + G+ ++K L G
Sbjct: 133 DSDGRTPLDLA--REHGNEEIVKLLEKQGG 160
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Query: 77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
G+ +K L+ GADVN S TPL A +G +IVK LI GAD+N + + L
Sbjct: 15 GNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPL 74
Query: 137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 196
AA +G H ++K L+ GADVN TPL A +G +IVK LI GAD+N +
Sbjct: 75 HYAAKEG--HKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS 132
Query: 197 NHYNNSCLMIAAYKG 211
+ + L +A G
Sbjct: 133 DSDGRTPLDLAREHG 147
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GH ++K L+ GADVN TPL A +G +IVK LI GAD+N + + L
Sbjct: 48 GHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPL 107
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
AA + GH ++K L+ GADVN S TPL A G +IVK L + G L
Sbjct: 108 HYAAKE--GHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
A +G D VK LIE+GAD+N ++ + L AA +G H ++K L+ GADVN
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEG--HKEIVKLLISKGADVNAKDS 68
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
TPL A +G +IVK LI GAD+N + + L AA +G
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEG 114
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N + + L +AA +G HL +++ L+ AGADVN
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--HLEIVEVLLKAGADVNA 63
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
K TPL A +G L+IV+ L++ GAD+N + + L +AA + GHL +++ L+
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE--GHLEIVEVLL 121
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
AGADVN K TP A +G DI + L
Sbjct: 122 KAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN K TPL A +G L+IV+ L++ GAD+N + +
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 71
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA + GHL +++ L+ AGADVN K TPL A +G L+IV+ L++ GAD+N
Sbjct: 72 LHLAARE--GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Query: 128 TNHYNNSCLMIAAYKG 143
+ + + +A G
Sbjct: 130 QDKFGKTPFDLAIDNG 145
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN K TPL A +G L+IV+ L++ GAD+N + +
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 71
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA +G HL +++ L+ AGADVN K TPL A +G L+IV+ L++ GAD+N
Sbjct: 72 LHLAAREG--HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + +A G
Sbjct: 130 QDKFGKTPFDLAIDNG 145
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GHL +++ L+ AGADVN K TPL A +G L+IV+ L++ GAD+N + + L
Sbjct: 46 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 105
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
+AA + GHL +++ L+ AGADVN K TP A +G DI + L
Sbjct: 106 HLAARE--GHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N + + L +AA +G HL +++ L+ AGADVN
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--HLEIVEVLLKAGADVNA 63
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
K TPL A +G L+IV+ L++ GAD+N + + L +AA +G
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 112
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N + + L +AA KG HL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKG--HLEIVEVLLKHGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
+ K TPL A G L+IV+ L+++GAD+N T+ Y + L +AA AGHL +++ L+
Sbjct: 76 ADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAA--DAGHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
GADVN K T + +G D+ + L
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 2/143 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN + TPL A G L+IV+ L++HGAD+N + ++
Sbjct: 24 AGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA GHL +++ L+ GADVN + TPL A G L+IV+ L+++GAD+N
Sbjct: 84 LHLAALY--GHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
+ + + I+ G L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN + TPL A G L+IV+ L++HGAD+N + ++
Sbjct: 24 AGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA G HL +++ L+ GADVN + TPL A G L+IV+ L+++GAD+N
Sbjct: 84 LHLAALYG--HLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + I+ G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 61
+AA KG HL +++ L+ GADVN + K TPL A G L+IV+ L+++GAD+N T+
Sbjct: 53 LAAIKG--HLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATD 110
Query: 62 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
Y + L +AA AGHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 111 TYGFTPLHLAA--DAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N + + L +AA KG HL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKG--HLEIVEVLLKHGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+ K TPL A G L+IV+ L+++GAD+N T+ Y + L +AA G
Sbjct: 76 ADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAG 124
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN T TPL A G L+IV+ L++HGAD++ + Y +
Sbjct: 24 AGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA GHL +++ L+ GADVN T STPL A +G L+IV+ L+++GAD+N
Sbjct: 84 LHLAAM--TGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Query: 128 TNHYNNSCLMIAAYKG 143
+ + + I+ G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN T TPL A G L+IV+ L++HGAD++ + Y +
Sbjct: 24 AGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA GHL +++ L+ GADVN T STPL A +G L+IV+ L+++GAD+N
Sbjct: 84 LHLAAM--TGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + I+ G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ LI +GAD+N ++ + L +AA +GHL +++ L+ GADV+
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAV--SGHLEIVEVLLKHGADVDA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
+ TPL A G L+IV+ L+++GAD+N + ++ L +AA +G HL +++ L+
Sbjct: 76 ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEG--HLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVK 184
GADVN K T + +G D+ K
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
+GHL +++ L+ GADV+ + TPL A G L+IV+ L+++GAD+N + ++
Sbjct: 57 SGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTP 116
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 116
L +AA +G HL +++ L+ GADVN K T + +G D+ K
Sbjct: 117 LHLAADEG--HLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 38 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 97
A +G D VK LIE+GAD+N ++ + L AA G H V+K L+ GADVN
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENG--HKEVVKLLISKGADVNAKDS 68
Query: 98 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG 157
TPL A +G ++VK LI GAD+N + + L AA GH V+K L+ G
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN--GHKEVVKLLISKG 126
Query: 158 ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
ADVN S TPL A G ++VK L + G
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G+ +K L+ GADVN S TPL A +G ++VK LI GAD+N + + L
Sbjct: 15 GNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPL 74
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
AA GH V+K L+ GADVN TPL A +G ++VK LI GAD+N +
Sbjct: 75 HHAAEN--GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS 132
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158
+ + L +A + G+ V+K L G
Sbjct: 133 DSDGRTPLDLA--REHGNEEVVKLLEKQGG 160
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
G+ +K L+ GADVN S TPL A +G ++VK LI GAD+N + + L
Sbjct: 15 GNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPL 74
Query: 137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 196
AA G H V+K L+ GADVN TPL A +G ++VK LI GAD+N +
Sbjct: 75 HHAAENG--HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS 132
Query: 197 NHYNNSCLMIAAYKG 211
+ + L +A G
Sbjct: 133 DSDGRTPLDLAREHG 147
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
A +G D VK LIE+GAD+N ++ + L AA G H V+K L+ GADVN
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENG--HKEVVKLLISKGADVNAKDS 68
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
TPL A +G ++VK LI GAD+N + + L AA G
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG 114
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN + TPL A G L+IV+ L+++GAD+N ++Y +
Sbjct: 24 AGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA GHL +++ L+ GADVN TPL A YDG L+IV+ L+++GAD+N
Sbjct: 84 LHLAADN--GHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
+ + + I+ G L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN + TPL A G L+IV+ L+++GAD+N ++Y +
Sbjct: 24 AGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA G HL +++ L+ GADVN TPL A YDG L+IV+ L+++GAD+N
Sbjct: 84 LHLAADNG--HLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + I+ G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N T+ ++ L +AA GHL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAK--TGHLEIVEVLLKYGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
+TPL A +G L+IV+ L++HGAD+N ++ + L +AAY GHL +++ L+
Sbjct: 76 WDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYD--GHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
GADVN K T + +G D+ + L
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GHL +++ L+ GADVN +TPL A +G L+IV+ L++HGAD+N ++ + L
Sbjct: 58 GHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPL 117
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
+AAY GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 118 HLAAYD--GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N T+ ++ L +AA GHL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAK--TGHLEIVEVLLKYGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+TPL A +G L+IV+ L++HGAD+N ++ + L +AAY G
Sbjct: 76 WDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDG 124
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN + TPL A +G+L+IV+ L+++GAD+N ++ +
Sbjct: 16 AGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITP 75
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AAY GHL +++ L+ GADVN + TPL A G+L+IV+ L++HGAD+N
Sbjct: 76 LHLAAYD--GHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNA 133
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
+ + I+ +G L+ I
Sbjct: 134 QDALGLTAFDISINQGQEDLAEI 156
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 81/136 (59%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN + TPL A +G+L+IV+ L+++GAD+N ++ +
Sbjct: 16 AGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITP 75
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AAY G HL +++ L+ GADVN + TPL A G+L+IV+ L++HGAD+N
Sbjct: 76 LHLAAYDG--HLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNA 133
Query: 196 TNHYNNSCLMIAAYKG 211
+ + I+ +G
Sbjct: 134 QDALGLTAFDISINQG 149
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N T+ + L +AA G L +++ L+ GADVN
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANG--QLEIVEVLLKNGADVNA 67
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
S TPL A YDG L+IV+ L++HGAD+N + + L +AA +G L +++ L+
Sbjct: 68 SDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAAL--SGQLEIVEVLL 125
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
GADVN T + G+ D+ + L
Sbjct: 126 KHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G L +++ L+ GADVN S TPL A YDG L+IV+ L++HGAD+N + + L
Sbjct: 50 GQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPL 109
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
+AA +G L +++ L+ GADVN T + G+ D+ + L
Sbjct: 110 HLAAL--SGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N T+ + L +AA G L +++ L+ GADVN
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANG--QLEIVEVLLKNGADVNA 67
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
S TPL A YDG L+IV+ L++HGAD+N + + L +AA G
Sbjct: 68 SDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSG 116
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 2/143 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN K TPL A +G L+IV+ L++ GAD+N + +
Sbjct: 24 AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA + GHL +++ L+ AGADVN K TPL A +G L+IV+ L++ GAD+N
Sbjct: 84 LHLAARE--GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
+ + + I+ G L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN K TPL A +G L+IV+ L++ GAD+N + +
Sbjct: 24 AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA +G HL +++ L+ AGADVN K TPL A +G L+IV+ L++ GAD+N
Sbjct: 84 LHLAAREG--HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + I+ G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N + + L +AA +G HL +++ L+ AGADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--HLEIVEVLLKAGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
K TPL A +G L+IV+ L++ GAD+N + + L +AA + GHL +++ L+
Sbjct: 76 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE--GHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
AGADVN K T + +G D+ + L
Sbjct: 134 KAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GHL +++ L+ AGADVN K TPL A +G L+IV+ L++ GAD+N + + L
Sbjct: 58 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPL 117
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
+AA + GHL +++ L+ AGADVN K T + +G D+ + L
Sbjct: 118 HLAARE--GHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N + + L +AA +G HL +++ L+ AGADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--HLEIVEVLLKAGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
K TPL A +G L+IV+ L++ GAD+N + + L +AA +G
Sbjct: 76 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 124
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 38 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 97
A +G D VK L+E+GAD+N ++ + L +AA G H V+K L+ GAD N
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENG--HKEVVKLLLSQGADPNAKDS 68
Query: 98 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG 157
TPL A +G ++VK L+ GAD N + + L +AA GH V+K L+ G
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN--GHKEVVKLLLSQG 126
Query: 158 ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
AD N S TPL A G ++VK L + G
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 75/150 (50%), Gaps = 4/150 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G+ +K L+ GADVN S TPL A +G ++VK L+ GAD N + + L
Sbjct: 15 GNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPL 74
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
+AA GH V+K L+ GAD N TPL A +G ++VK L+ GAD N +
Sbjct: 75 HLAAEN--GHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTS 132
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158
+ + L +A + G+ V+K L G
Sbjct: 133 DSDGRTPLDLA--REHGNEEVVKLLEKQGG 160
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
G+ +K L+ GADVN S TPL A +G ++VK L+ GAD N + + L
Sbjct: 15 GNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPL 74
Query: 137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 196
+AA G H V+K L+ GAD N TPL A +G ++VK L+ GAD N +
Sbjct: 75 HLAAENG--HKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTS 132
Query: 197 NHYNNSCLMIAAYKG 211
+ + L +A G
Sbjct: 133 DSDGRTPLDLAREHG 147
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
A +G D VK L+E+GAD+N ++ + L +AA G H V+K L+ GAD N
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENG--HKEVVKLLLSQGADPNAKDS 68
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
TPL A +G ++VK L+ GAD N + + L +AA G
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENG 114
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN + TPL A ++G L+IV+ L+++GAD+N +H +
Sbjct: 24 AGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA GHL +++ L+ GADVN + TPL A G L+IV+ L+++GAD+N
Sbjct: 84 LRLAAL--FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
+ + + I+ G L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN + TPL A ++G L+IV+ L+++GAD+N +H +
Sbjct: 24 AGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA GHL +++ L+ GADVN + TPL A G L+IV+ L+++GAD+N
Sbjct: 84 LRLAAL--FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + I+ G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A GR D V+ L+ +GAD+N + + L +AA+ G HL +++ L+ GADVN
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG--HLEIVEVLLKNGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
TPLR A G L+IV+ L+++GAD+N + ++ L +AA GHL +++ L+
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM--FGHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
GADVN K T + +G D+ + L
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 61
+AA+ G HL +++ L+ GADVN TPLR A G L+IV+ L+++GAD+N +
Sbjct: 53 LAAFNG--HLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110
Query: 62 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
++ L +AA GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 111 MEGHTPLHLAAM--FGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A GR D V+ L+ +GAD+N + + L +AA+ G HL +++ L+ GADVN
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG--HLEIVEVLLKNGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
TPLR A G L+IV+ L+++GAD+N + ++ L +AA G
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG 124
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 2/143 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN S TPL A Y G L+IV+ L+++GAD+N + +
Sbjct: 24 AGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA +G HL V++ L+ GADVN + TPL A G L+IV+ L++HGAD+N
Sbjct: 84 LHLAADRG--HLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
+ + + I+ G L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN S TPL A Y G L+IV+ L+++GAD+N + +
Sbjct: 24 AGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA +G HL V++ L+ GADVN + TPL A G L+IV+ L++HGAD+N
Sbjct: 84 LHLAADRG--HLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + I+ G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N ++H + L +AAY GHL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAY--FGHLEIVEVLLKNGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
TPL A G L++V+ L+++GAD+N +H + L +AA GHL +++ L+
Sbjct: 76 DDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAA--NIGHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
GADVN K T + +G D+ + L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 50
GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 124 GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 171 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
L A G+ D V+ L+ +GAD+N ++H + L +AAY G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFG 58
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N + Y ++ L +AA GHL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAAR--VGHLEIVEVLLKNGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
+ STPL A G L+IV+ L+++GAD+N + ++ L +AA GHL +++ L+
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAA--DTGHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
GADVN K T + +G D+ + L
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 2/143 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN TPL A G L+IV+ L+++GAD+N + ++
Sbjct: 24 AGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA +G HL +++ L+ GADVN STPL A G L+IV+ L+++GAD+N
Sbjct: 84 LHLAAKRG--HLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
+ + + I+ G L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN TPL A G L+IV+ L+++GAD+N + ++
Sbjct: 24 AGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA +G HL +++ L+ GADVN STPL A G L+IV+ L+++GAD+N
Sbjct: 84 LHLAAKRG--HLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + I+ G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GHL +++ L+ GADVN + STPL A G L+IV+ L+++GAD+N + ++ L
Sbjct: 58 GHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPL 117
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
+AA GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 118 HLAA--DTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N + Y ++ L +AA GHL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAAR--VGHLEIVEVLLKNGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+ STPL A G L+IV+ L+++GAD+N + ++ L +AA G
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTG 124
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N T+ + L +AA G HL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYG--HLEIVEVLLKHGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
STPL A G L+IV+ L++HGAD+N + + ++ L +AA GHL +++ L+
Sbjct: 76 IDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM--GHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
GADVN K T + +G D+ + L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 80/143 (55%), Gaps = 2/143 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN + + TPL A G L+IV+ L++HGAD+N + ++
Sbjct: 24 AGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA GHL +++ L+ GADVN TPL A G L+IV+ L++HGAD+N
Sbjct: 84 LHLAAL--IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
+ + + I+ G L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN + + TPL A G L+IV+ L++HGAD+N + ++
Sbjct: 24 AGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA GHL +++ L+ GADVN TPL A G L+IV+ L++HGAD+N
Sbjct: 84 LHLAAL--IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + I+ G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GHL +++ L+ GADVN STPL A G L+IV+ L++HGAD+N + + ++ L
Sbjct: 58 GHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPL 117
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
+AA GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 118 HLAAIM--GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N T+ + L +AA G HL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYG--HLEIVEVLLKHGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
STPL A G L+IV+ L++HGAD+N + + ++ L +AA G
Sbjct: 76 IDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMG 124
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 2/143 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN T TPL A + G L+IV+ L+++GAD+N + +
Sbjct: 24 AGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA + GHL +++ L+ GADVN S TPL A G L+IV+ L+++GAD+N
Sbjct: 84 LHLAARR--GHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
+ + + I+ G L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN T TPL A + G L+IV+ L+++GAD+N + +
Sbjct: 24 AGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA +G HL +++ L+ GADVN S TPL A G L+IV+ L+++GAD+N
Sbjct: 84 LHLAARRG--HLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + I+ G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N + + L +AA+ GHL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAH--FGHLEIVEVLLKNGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
TPL A G L+IV+ L+++GAD+N ++ + + L +AA + GHL +++ L+
Sbjct: 76 KDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKR--GHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
GADVN K T + +G D+ + L
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GHL +++ L+ GADVN TPL A G L+IV+ L+++GAD+N ++ + + L
Sbjct: 58 GHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPL 117
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
+AA + GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 118 HLAAKR--GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N + + L +AA+ GHL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAH--FGHLEIVEVLLKNGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
TPL A G L+IV+ L+++GAD+N ++ + + L +AA +G
Sbjct: 76 KDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRG 124
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N T+ + L +AA G HL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYG--HLEIVEVLLKHGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
STPL A G L+IV+ L++HGAD+N + + ++ L +AA GHL +++ L+
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM--GHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
GADVN K T + +G D+ + L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 80/143 (55%), Gaps = 2/143 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN + + TPL A G L+IV+ L++HGAD+N + ++
Sbjct: 24 AGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA GHL +++ L+ GADVN TPL A G L+IV+ L++HGAD+N
Sbjct: 84 LHLAAL--IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
+ + + I+ G L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN + + TPL A G L+IV+ L++HGAD+N + ++
Sbjct: 24 AGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA GHL +++ L+ GADVN TPL A G L+IV+ L++HGAD+N
Sbjct: 84 LHLAAL--IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + I+ G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GHL +++ L+ GADVN STPL A G L+IV+ L++HGAD+N + + ++ L
Sbjct: 58 GHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPL 117
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
+AA GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 118 HLAAIM--GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N T+ + L +AA G HL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYG--HLEIVEVLLKHGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
STPL A G L+IV+ L++HGAD+N + + ++ L +AA G
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMG 124
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N T++ + L +AA G HL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNG--HLEIVEVLLKNGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
S T TPL A G L+IV+ L++HGAD+N ++ ++ L +AA GHL +++ L+
Sbjct: 76 SDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKY--GHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
GADVN K T + +G D+ + L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 2/143 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN + TPL A +G L+IV+ L+++GAD+N ++ +
Sbjct: 24 AGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA GHL +++ L+ GADVN TPL A G L+IV+ L++HGAD+N
Sbjct: 84 LHLAA--ATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
+ + + I+ G L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN + TPL A +G L+IV+ L+++GAD+N ++ +
Sbjct: 24 AGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA GHL +++ L+ GADVN TPL A G L+IV+ L++HGAD+N
Sbjct: 84 LHLAA--ATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + I+ G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GHL +++ L+ GADVN S T TPL A G L+IV+ L++HGAD+N ++ ++ L
Sbjct: 58 GHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPL 117
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
+AA GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 118 HLAAKY--GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N T++ + L +AA G HL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNG--HLEIVEVLLKNGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
S T TPL A G L+IV+ L++HGAD+N ++ ++ L +AA G
Sbjct: 76 SDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYG 124
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD N +HY + L +AA GHL +++ L+ GADVN
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAA--AVGHLEIVEVLLRNGADVNA 63
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
+TPL A G L+IV+ L+++GAD+N + + L +AAY GHL +++ L+
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYW--GHLEIVEVLL 121
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
GADVN K T + G D+ + L
Sbjct: 122 KHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GAD N TPL A G L+IV+ L+ +GAD+N + +
Sbjct: 12 AGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTP 71
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA GHL +++ L+ GADVN T TPL A Y G L+IV+ L++HGAD+N
Sbjct: 72 LHLAA--SLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNA 129
Query: 196 TNHYNNSCLMIAAYKGIDVG 215
+ + + I+ ID+G
Sbjct: 130 QDKFGKTAFDIS----IDIG 145
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 2/143 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GAD N TPL A G L+IV+ L+ +GAD+N + +
Sbjct: 12 AGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTP 71
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA GHL +++ L+ GADVN T TPL A Y G L+IV+ L++HGAD+N
Sbjct: 72 LHLAA--SLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNA 129
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
+ + + I+ G L+ I
Sbjct: 130 QDKFGKTAFDISIDIGNEDLAEI 152
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 50
+AAY G HL +++ L+ GADVN K T + G D+ + L
Sbjct: 107 LAAYWG--HLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 171 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
L A G+ D V+ L+ +GAD N +HY + L +AA G
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVG 46
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A GR D V+ L+ +GAD+N + + L +AAY GHL +++ L+ GADVN
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAY--WGHLEIVEVLLKNGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
STPL A + G L+IV+ L+++GAD+N + + L +AA + GHL +++ L+
Sbjct: 76 YDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANR--GHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
GADVN K T + +G D+ + L
Sbjct: 134 KYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 2/143 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN + TPL A Y G L+IV+ L+++GAD+N + ++
Sbjct: 24 AGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA+ GHL +++ L+ GADVN TPL A G L+IV+ L+++GAD+N
Sbjct: 84 LHLAAH--FGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
+ + + I+ G L+ I
Sbjct: 142 QDKFGKTAFDISINNGNEDLAEI 164
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN + TPL A Y G L+IV+ L+++GAD+N + ++
Sbjct: 24 AGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA+ GHL +++ L+ GADVN TPL A G L+IV+ L+++GAD+N
Sbjct: 84 LHLAAH--FGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + I+ G
Sbjct: 142 QDKFGKTAFDISINNG 157
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 61
+AAY GHL +++ L+ GADVN STPL A + G L+IV+ L+++GAD+N +
Sbjct: 53 LAAY--WGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD 110
Query: 62 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
+ L +AA + GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 111 DNGITPLHLAANR--GHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A GR D V+ L+ +GAD+N + + L +AAY GHL +++ L+ GADVN
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAY--WGHLEIVEVLLKNGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
STPL A + G L+IV+ L+++GAD+N + + L +AA +G
Sbjct: 76 YDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRG 124
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 5/201 (2%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
+G L +K + A + T S T L AC G +IV++L++ G +N + S
Sbjct: 17 SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWS 76
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
L IAA AG ++K L+ GA VN + TPL A R +I L+E GA+ +
Sbjct: 77 PLHIAA--SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
+HY + + AA KG +L +I L++ A N +TPL AC + R++ K L
Sbjct: 135 AKDHYEATAMHRAAAKG--NLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 192
Query: 187 IEHGADLNITNHYNNSCLMIA 207
+ GA + I N + L +A
Sbjct: 193 VSQGASIYIENKEEKTPLQVA 213
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 66 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGAD 124
S LM+ +G L +K + A + T S T L AC G +IV++L++ G
Sbjct: 7 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 66
Query: 125 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 184
+N + S L IAA AG ++K L+ GA VN + TPL A R +I
Sbjct: 67 VNDKDDAGWSPLHIAA--SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 124
Query: 185 YLIEHGADLNITNHYNNSCLMIAAYKG 211
L+E GA+ + +HY + + AA KG
Sbjct: 125 MLLEGGANPDAKDHYEATAMHRAAAKG 151
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 134 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGAD 192
S LM+ +G L +K + A + T S T L AC G +IV++L++ G
Sbjct: 7 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 66
Query: 193 LNITNHYNNSCLMIAAYKGID 213
+N + S L IAA G D
Sbjct: 67 VNDKDDAGWSPLHIAASAGRD 87
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 5/201 (2%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
+G L +K + A + T S T L AC G +IV++L++ G +N + S
Sbjct: 16 SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWS 75
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
L IAA AG ++K L+ GA VN + TPL A R +I L+E GA+ +
Sbjct: 76 PLHIAA--SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
+HY + + AA KG +L +I L++ A N +TPL AC + R++ K L
Sbjct: 134 AKDHYEATAMHRAAAKG--NLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 191
Query: 187 IEHGADLNITNHYNNSCLMIA 207
+ GA + I N + L +A
Sbjct: 192 VSQGASIYIENKEEKTPLQVA 212
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 66 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGAD 124
S LM+ +G L +K + A + T S T L AC G +IV++L++ G
Sbjct: 6 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 125 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 184
+N + S L IAA AG ++K L+ GA VN + TPL A R +I
Sbjct: 66 VNDKDDAGWSPLHIAA--SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 185 YLIEHGADLNITNHYNNSCLMIAAYKG 211
L+E GA+ + +HY + + AA KG
Sbjct: 124 MLLEGGANPDAKDHYEATAMHRAAAKG 150
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 134 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGAD 192
S LM+ +G L +K + A + T S T L AC G +IV++L++ G
Sbjct: 6 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 193 LNITNHYNNSCLMIAAYKGID 213
+N + S L IAA G D
Sbjct: 66 VNDKDDAGWSPLHIAASAGRD 86
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N + + + L + G HL +I+ L+ ADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNG--HLEIIEVLLKYAADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
S K+ TPL A Y G L+IV+ L+++GAD+N ++ + L +AA GHL +++ L+
Sbjct: 76 SDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAED--GHLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
GADVN K T + +G D+ + L
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 81/143 (56%), Gaps = 2/143 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN + TPL +G L+I++ L+++ AD+N ++ +
Sbjct: 24 AGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AAY+ GHL +++ L+ GADVN TPL A DG L+IV+ L+++GAD+N
Sbjct: 84 LHLAAYR--GHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
+ + + I+ G L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN + TPL +G L+I++ L+++ AD+N ++ +
Sbjct: 24 AGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AAY+G HL +++ L+ GADVN TPL A DG L+IV+ L+++GAD+N
Sbjct: 84 LHLAAYRG--HLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + I+ G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GHL +I+ L+ ADVN S K+ TPL A Y G L+IV+ L+++GAD+N ++ + L
Sbjct: 58 GHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPL 117
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
+AA GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 118 HLAAED--GHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N + + + L + G HL +I+ L+ ADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNG--HLEIIEVLLKYAADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
S K+ TPL A Y G L+IV+ L+++GAD+N ++ + L +AA G
Sbjct: 76 SDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDG 124
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 2/143 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN STPL A + G +IV+ L++HGAD+N + +
Sbjct: 24 AGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA G HL +++ L+ GADVN TPL A G L+IV+ L++HGAD+N
Sbjct: 84 LHLAADNG--HLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141
Query: 128 TNHYNNSCLMIAAYKGAGHLSVI 150
+ + + I+ G L+ I
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEI 164
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN STPL A + G +IV+ L++HGAD+N + +
Sbjct: 24 AGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA G HL +++ L+ GADVN TPL A G L+IV+ L++HGAD+N
Sbjct: 84 LHLAADNG--HLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141
Query: 196 TNHYNNSCLMIAAYKG 211
+ + + I+ G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N + ++ L +AA+ GH +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAW--IGHPEIVEVLLKHGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
TPL A +G L+IV+ L+++GAD+N + Y + L +AA +G HL +++ L+
Sbjct: 76 RDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRG--HLEIVEVLL 133
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
GADVN K T + +G D+ + L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GH +++ L+ GADVN TPL A +G L+IV+ L+++GAD+N + Y + L
Sbjct: 58 GHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPL 117
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
+AA +G HL +++ L+ GADVN K T + +G D+ + L
Sbjct: 118 HLAADRG--HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 5/208 (2%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGADLNI 59
MI +G L +K + A + T S T L AC G +IV++L++ G +N
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
+ S L IAA AG ++K L+ GA VN + TPL A R +I L+
Sbjct: 69 KDDAGWSPLHIAA--SAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
E GA+ + +HY+ + + AA KG +L ++ L+ A N +TPL AC + R
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKG--NLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIA 207
++ K+L+ GA + I N + L +A
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 66 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGAD 124
S +MI +G L +K + A + T S T L AC G +IV++L++ G
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 125 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 184
+N + S L IAA AG ++K L+ GA VN + TPL A R +I
Sbjct: 66 VNDKDDAGWSPLHIAA--SAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 185 YLIEHGADLNITNHYNNSCLMIAAYKG 211
L+E GA+ + +HY+ + + AA KG
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRAAAKG 150
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 134 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGAD 192
S +MI +G L +K + A + T S T L AC G +IV++L++ G
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 193 LNITNHYNNSCLMIAAYKGID 213
+N + S L IAA G D
Sbjct: 66 VNDKDDAGWSPLHIAASAGRD 86
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 101/208 (48%), Gaps = 5/208 (2%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGADLNI 59
MI +G L +K + A + T S T L AC G +IV++L++ G +N
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
+ S L IAA AG ++K L+ GA VN + TPL A R +I L+
Sbjct: 69 KDDAGWSPLHIAA--SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
E GA+ + +HY+ + + AA K G+L ++ L+ A N +TPL AC + R
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAK--GNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIA 207
++ K+L+ GA + I N + L +A
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 66 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGAD 124
S +MI +G L +K + A + T S T L AC G +IV++L++ G
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 125 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 184
+N + S L IAA AG ++K L+ GA VN + TPL A R +I
Sbjct: 66 VNDKDDAGWSPLHIAA--SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 185 YLIEHGADLNITNHYNNSCLMIAAYKG 211
L+E GA+ + +HY+ + + AA KG
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRAAAKG 150
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 134 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGAD 192
S +MI +G L +K + A + T S T L AC G +IV++L++ G
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 193 LNITNHYNNSCLMIAAYKGID 213
+N + S L IAA G D
Sbjct: 66 VNDKDDAGWSPLHIAASAGXD 86
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 38 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 97
A +G D VK L+E+GAD N ++ + L AA G H ++K L+ GAD N
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENG--HKEIVKLLLSKGADPNAKDS 68
Query: 98 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG 157
TPL A +G +IVK L+ GAD N + + L AA GH ++K L+ G
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN--GHKEIVKLLLSKG 126
Query: 158 ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
AD N S TPL A G +IVK L + G
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G+ +K L+ GAD N S TPL A +G +IVK L+ GAD N + + L
Sbjct: 15 GNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPL 74
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
AA GH ++K L+ GAD N TPL A +G +IVK L+ GAD N +
Sbjct: 75 HYAAEN--GHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTS 132
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158
+ + L +A + G+ ++K L G
Sbjct: 133 DSDGRTPLDLA--REHGNEEIVKLLEKQGG 160
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Query: 77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
G+ +K L+ GAD N S TPL A +G +IVK L+ GAD N + + L
Sbjct: 15 GNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPL 74
Query: 137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 196
AA G H ++K L+ GAD N TPL A +G +IVK L+ GAD N +
Sbjct: 75 HYAAENG--HKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTS 132
Query: 197 NHYNNSCLMIAAYKG 211
+ + L +A G
Sbjct: 133 DSDGRTPLDLAREHG 147
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
A +G D VK L+E+GAD N ++ + L AA G H ++K L+ GAD N
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENG--HKEIVKLLLSKGADPNAKDS 68
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
TPL A +G +IVK L+ GAD N + + L AA G
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENG 114
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
TPL A + G L IVK L++ GA N++N + L +AA AGH V K L+ A V
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAAR--AGHTEVAKYLLQNKAKV 73
Query: 93 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
N K TPL A G ++VK L+E+ A+ N+ ++ L IAA + GH+ +
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE--GHVETVLA 131
Query: 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 194
L+ A TK TPL A G++ + + L+E A N
Sbjct: 132 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 4/203 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G + V + L+ A N + K TPL A + LDIVK L+ G + + L
Sbjct: 157 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL 216
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
IAA + + V ++L+ G N + TPL A +G ++V L+ A+ N+
Sbjct: 217 HIAAKQN--QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
N + L + A +G H+ V L+ G V+ +T+ TPL A + G + +VK+L++
Sbjct: 275 NKSGLTPLHLVAQEG--HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332
Query: 189 HGADLNITNHYNNSCLMIAAYKG 211
H AD+N S L AA +G
Sbjct: 333 HQADVNAKTKLGYSPLHQAAQQG 355
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 98/209 (46%), Gaps = 5/209 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GHL ++K L+ GA N S TPL A G ++ KYL+++ A +N + + L
Sbjct: 25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL 84
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
AA GH +++K L+ A+ N +T TPL A +G ++ V L+E A
Sbjct: 85 HCAAR--IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM 142
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
+ L +AA G + V + L+ A N + K TPL A + LDIVK L+
Sbjct: 143 TKKGFTPLHVAAKYGK--VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200
Query: 189 HGADLNITNHYNNSCLMIAAYKG-IDVGR 216
G + + L IAA + ++V R
Sbjct: 201 RGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 4/201 (1%)
Query: 11 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
L ++K L+ G + TPL A ++++ + L+++G N + + L +
Sbjct: 192 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL 251
Query: 71 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 130
AA +G H ++ L+ A+ N K+ TPL +G + + LI+HG ++ T
Sbjct: 252 AAQEG--HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR 309
Query: 131 YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG 190
+ L +A++ G ++ ++K L+ ADVN TK +PL A G DIV L+++G
Sbjct: 310 MGYTPLHVASHYG--NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 191 ADLNITNHYNNSCLMIAAYKG 211
A N + + L IA G
Sbjct: 368 ASPNEVSSDGTTPLAIAKRLG 388
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 4/204 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AGH V K L+ A VN K TPL A G ++VK L+E+ A+ N+ ++
Sbjct: 57 AGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 116
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L IAA + GH+ + L+ A TK TPL A G++ + + L+E A N
Sbjct: 117 LHIAARE--GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 174
Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187
+ L +A + +L ++K L+ G + TPL A ++++ + L+
Sbjct: 175 AGKNGLTPLHVAVHH--NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232
Query: 188 EHGADLNITNHYNNSCLMIAAYKG 211
++G N + + L +AA +G
Sbjct: 233 QYGGSANAESVQGVTPLHLAAQEG 256
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 4/177 (2%)
Query: 10 HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 69
+ V ++L+ G N + TPL A +G ++V L+ A+ N+ N + L
Sbjct: 224 QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH 283
Query: 70 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
+ A +G H+ V L+ G V+ +T+ TPL A + G + +VK+L++H AD+N
Sbjct: 284 LVAQEG--HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 341
Query: 130 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
S L AA + GH ++ L+ GA N + +TPL A G + + L
Sbjct: 342 KLGYSPLHQAAQQ--GHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GH+ V L+ G V+ +T+ TPL A + G + +VK+L++H AD+N S L
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL 348
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
AA + GH ++ L+ GA N + +TPL A G + + L
Sbjct: 349 HQAAQQ--GHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
TPL A + G L IVK L++ GA N++N + L +AA G
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAG 58
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
TPL A +G L++VK L+E GAD+N + + L +AA GHL V+K L+ AGADV
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--GHLEVVKLLLEAGADV 61
Query: 93 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 123
N K TPL A +G L++VK L+E GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
TPL A +G L++VK L+E GAD+N + + L +AA G HL V+K L+ AGADV
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HLEVVKLLLEAGADV 61
Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
N K TPL A +G L++VK L+E GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GHL V+K L+ AGADVN K TPL A +G L++VK L+E GAD+N + + L
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Query: 69 MIAAYKGAGHLSVIKTLVHAGA 90
+AA GHL V+K L+ AGA
Sbjct: 73 HLAARN--GHLEVVKLLLEAGA 92
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
GHL V+K L+ AGADVN K TPL A +G L++VK L+E GAD+N + + L
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Query: 137 MIAAYKGAGHLSVIKTLVHAGA 158
+AA GHL V+K L+ AGA
Sbjct: 73 HLAARN--GHLEVVKLLLEAGA 92
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 41/67 (61%)
Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
GHL V+K L+ AGADVN K TPL A +G L++VK L+E GAD+N + + L
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Query: 205 MIAAYKG 211
+AA G
Sbjct: 73 HLAARNG 79
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
TPL A +G L++VK L+E GAD+N + + L +AA G
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 46
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 20/216 (9%)
Query: 11 LSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 69
+ +++ L+ GA+VN + TPL A R DIV+ L+ HGAD + + +
Sbjct: 18 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL 77
Query: 70 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
+AA AG + ++K + GADVN T A G++ +K+L + GA++N+
Sbjct: 78 LAAI--AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 135
Query: 130 HYNN----------SCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACY-- 176
+ LM AA K GH+ V+K L+ GADVN L A
Sbjct: 136 KTKEDQERLRKGGATALMDAAEK--GHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 193
Query: 177 -DGRLD-IVKYLIEHGADLNITNHYNNSCLMIAAYK 210
D ++ I L++HGAD+N+ + L++A K
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 16/209 (7%)
Query: 13 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 72
+++ L+ GAD K +TP A G + ++K + GAD+N + Y + M AA
Sbjct: 54 IVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 113
Query: 73 YKGAGHLSVIKTLVHAGADVNHSTKTQ----------STPLRAACYDGRLDIVKYLI-EH 121
G + +K L GA+VN KT+ +T L A G ++++K L+ E
Sbjct: 114 V--YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171
Query: 122 GADLNITNHYNNSCLM--IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
GAD+N ++ + L+ + + + ++ L+ GADVN + TPL A
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231
Query: 180 LDIVKYLIEHG-ADLNITNHYNNSCLMIA 207
L +V+ L+E ++N T+ + L++A
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTALLLA 260
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 20/200 (10%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN-- 65
AG + ++K + GADVN T A G++ +K+L + GA++N+
Sbjct: 82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 141
Query: 66 --------SCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACY---DGRLD 113
+ LM AA K GH+ V+K L+ GADVN L A D ++
Sbjct: 142 ERLRKGGATALMDAAEK--GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 199
Query: 114 -IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG-ADVNHSTKTQSTPL 171
I L++HGAD+N+ + L++A K HL +++ L+ ++N + T L
Sbjct: 200 AITHLLLDHGADVNVRGERGKTPLILAVEK--KHLGLVQRLLEQEHIEINDTDSDGKTAL 257
Query: 172 RAACYDGRLDIVKYLIEHGA 191
A I + L + GA
Sbjct: 258 LLAVELKLKKIAELLCKRGA 277
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
A + +D+V+ L+E GA++N + A + + +++ L+ GAD K
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE-DIVELLLRHGADPVLRKK 70
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+TP A G + ++K + GAD+N + Y + M AA G
Sbjct: 71 NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 20/216 (9%)
Query: 11 LSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 69
+ +++ L+ GA+VN + TPL A R DIV+ L+ HGAD + + +
Sbjct: 38 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFI 97
Query: 70 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
+AA AG + ++K + GADVN T A G++ +K+L + GA++N+
Sbjct: 98 LAAI--AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 155
Query: 130 HYNN----------SCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACY-- 176
+ LM AA K GH+ V+K L+ GADVN L A
Sbjct: 156 KTKEDQERLRKGGATALMDAAEK--GHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 213
Query: 177 -DGRLD-IVKYLIEHGADLNITNHYNNSCLMIAAYK 210
D ++ I L++HGAD+N+ + L++A K
Sbjct: 214 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 249
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 16/209 (7%)
Query: 13 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 72
+++ L+ GAD K +TP A G + ++K + GAD+N + Y + M AA
Sbjct: 74 IVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 133
Query: 73 YKGAGHLSVIKTLVHAGADVNHSTKTQ----------STPLRAACYDGRLDIVKYLI-EH 121
G + +K L GA+VN KT+ +T L A G ++++K L+ E
Sbjct: 134 V--YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 191
Query: 122 GADLNITNHYNNSCLM--IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
GAD+N ++ + L+ + + + ++ L+ GADVN + TPL A
Sbjct: 192 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 251
Query: 180 LDIVKYLIEHG-ADLNITNHYNNSCLMIA 207
L +V+ L+E ++N T+ + L++A
Sbjct: 252 LGLVQRLLEQEHIEINDTDSDGKTALLLA 280
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 25/214 (11%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN-- 65
AG + ++K + GADVN T A G++ +K+L + GA++N+
Sbjct: 102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 161
Query: 66 --------SCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACY---DGRLD 113
+ LM AA K GH+ V+K L+ GADVN L A D ++
Sbjct: 162 ERLRKGGATALMDAAEK--GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 219
Query: 114 -IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG-ADVNHSTKTQSTPL 171
I L++HGAD+N+ + L++A K HL +++ L+ ++N + T L
Sbjct: 220 AITHLLLDHGADVNVRGERGKTPLILAVEK--KHLGLVQRLLEQEHIEINDTDSDGKTAL 277
Query: 172 RAACYDGRLDIVKYLIEHGA-----DLNITNHYN 200
A I + L + GA DL +T N
Sbjct: 278 LLAVELKLKKIAELLCKRGASTDCGDLVMTARRN 311
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 98 TQSTPLRAACYDGRL----------DIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL 147
T S+ RAA D L D+V+ L+E GA++N + A + +
Sbjct: 14 TSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE- 72
Query: 148 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
+++ L+ GAD K +TP A G + ++K + GAD+N + Y + M A
Sbjct: 73 DIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 132
Query: 208 AYKG 211
A G
Sbjct: 133 AVYG 136
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 20 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL 79
+G VN +++ S+PL A GR D++ L++HGA+ N L +A +G H
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQG--HF 132
Query: 80 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 139
V+K L+ + A N + +TPL AC G ++V L++HGA +N +N+ N+ L A
Sbjct: 133 QVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEA 192
Query: 140 AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
+ H+ V++ L+ GA V K Q T + A + ++
Sbjct: 193 VIE--KHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKI 231
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 9/177 (5%)
Query: 35 LRAACYDGRLDIVKYLIE------HGADLNITNHYNNSC-LMIAAYKGAGHLSVIKTLVH 87
L A DG L++V+YL+E A+ ++ C + K A + +
Sbjct: 15 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA 74
Query: 88 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL 147
+G VN +++ S+PL A GR D++ L++HGA+ N L +A +G H
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQG--HF 132
Query: 148 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
V+K L+ + A N + +TPL AC G ++V L++HGA +N +N+ N+ L
Sbjct: 133 QVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 4/161 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G +I L+ GA+ Q+ PL AC G +VK L++ A N + N+ L
Sbjct: 97 GRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPL 156
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
+ A GH ++ L+ GA +N S +T L A + + +V+ L+ HGA + +
Sbjct: 157 IYAC--SGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVL 214
Query: 129 NHYNNSCLMIAAY--KGAGHLSVIKTLVHAGADVNHSTKTQ 167
N + + A K L V+ + V + DV + + +
Sbjct: 215 NKRQRTAVDCAEQNSKIMELLQVVPSCVASLDDVAETDRKE 255
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 122 GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD 181
G +N+T+ +S L +AA G L I L+ GA+ Q+ PL AC G
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADL--IPLLLKHGANAGARNADQAVPLHLACQQGHFQ 133
Query: 182 IVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+VK L++ A N + N+ L+ A G
Sbjct: 134 VVKCLLDSNAKPNKKDLSGNTPLIYACSGG 163
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 103 LRAACYDGRLDIVKYLIE------HGADLNITNHYNNSC-LMIAAYKGAGHLSVIKTLVH 155
L A DG L++V+YL+E A+ ++ C + K A + +
Sbjct: 15 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA 74
Query: 156 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+G VN +++ S+PL A GR D++ L++HGA+ N L +A +G
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQG 130
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GHLS +K L+ GA VN T TPL AC G D V L++HGA + + S +
Sbjct: 103 GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPI 161
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
AA + GH+ + +L+ G +++H TPL AC + + VK L+E GAD+N
Sbjct: 162 HEAARR--GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 78/186 (41%), Gaps = 38/186 (20%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GH ++ L+ G VN T +PL AC G L VK L++H
Sbjct: 70 GHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH--------------- 114
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
GA VN T TPL AC G D V L++HGA +
Sbjct: 115 --------------------GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 154
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
+ S + AA + GH+ + +L+ G +++H TPL AC + + VK L+E
Sbjct: 155 SDL-ASPIHEAARR--GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211
Query: 189 HGADLN 194
GAD+N
Sbjct: 212 SGADVN 217
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
+P+ A G ++ LI G +NI + S L A GHLS +K L+ GA V
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL--GGHLSCVKILLKHGAQV 118
Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 194
N T TPL AC G D V L++HGA +
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GHLS +K L+ GA VN T TPL AC G D V L++HGA + + +
Sbjct: 47 GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASP-- 104
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
I GH+ + +L+ G +++H TPL AC + + VK L+E GAD+N
Sbjct: 105 -IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 75/186 (40%), Gaps = 38/186 (20%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GH ++ L+ G VN T +PL AC G L VK L++H
Sbjct: 14 GHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH--------------- 58
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
GA VN T TPL AC G D V L++HGA +
Sbjct: 59 --------------------GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 98
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
+ + I GH+ + +L+ G +++H TPL AC + + VK L+E
Sbjct: 99 SDLASP---IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 155
Query: 189 HGADLN 194
GAD+N
Sbjct: 156 SGADVN 161
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
+P+ A G ++ LI G +NI + S L A GHLS +K L+ GA V
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL--GGHLSCVKILLKHGAQV 62
Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 194
N T TPL AC G D V L++HGA +
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 96
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L +GAD+N +++ ++ L +AA GHL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAM--LGHLEIVEVLLKNGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
+ T TPL A + L+IV+ L++HGAD+N + + + I+ G L+ I
Sbjct: 76 TGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L +GAD+N +++ ++ L +AA GHL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAM--LGHLEIVEVLLKNGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+ T TPL A + L+IV+ L++HGAD+N + + + I+ G
Sbjct: 76 TGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L GADVN + TPL A G L+IV+ L+++GAD+N T + +
Sbjct: 24 AGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
L +AA+ A HL +++ L+ GADVN K T + +G D+ + L
Sbjct: 84 LHLAAW--ADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L GADVN + TPL A G L+IV+ L+++GAD+N T + +
Sbjct: 24 AGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
L +AA+ A HL +++ L+ GADVN K T + +G D+ + L
Sbjct: 84 LHLAAW--ADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN TPL A G L+IV+ L++HGAD+N ++ + +
Sbjct: 24 AGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
L +AA GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 84 LHLAAT--VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN TPL A G L+IV+ L++HGAD+N ++ + +
Sbjct: 24 AGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
L +AA GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 84 LHLAAT--VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N + + L +AA +G HL +++ L+ GADVN
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRG--HLEIVEVLLKHGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
S TPL A G L+IV+ L+E+GAD+N + + + I+ G L+ I
Sbjct: 76 SDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N + + L +AA +G HL +++ L+ GADVN
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRG--HLEIVEVLLKHGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
S TPL A G L+IV+ L+E+GAD+N + + + I+ G
Sbjct: 76 SDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN TPL A G L+IV+ L++HGAD+N ++ + +
Sbjct: 24 AGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
L +AA GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 84 LHLAAT--VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN TPL A G L+IV+ L++HGAD+N ++ + +
Sbjct: 24 AGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
L +AA GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 84 LHLAAT--VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N + + L +AA +G HL +++ L+ GADVN
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRG--HLEIVEVLLKHGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
S TPL A G L+IV+ L+E+GAD+N + + + I+ G L+ I
Sbjct: 76 SDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N + + L +AA +G HL +++ L+ GADVN
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRG--HLEIVEVLLKHGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
S TPL A G L+IV+ L+E+GAD+N + + + I+ G
Sbjct: 76 SDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 5/198 (2%)
Query: 15 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN-ITNHYNNSCLMIAAY 73
+ LV AG DV K T L A + R+D+VKY I GA ++ + N++ L A
Sbjct: 26 RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR 85
Query: 74 KGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 133
+G HLS++ L+ GAD + + + A G IV YLI G D+++ +
Sbjct: 86 QG--HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM 143
Query: 134 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKT-QSTPLRAACYDGRLDIVKYLIEHGAD 192
+ LM AAY+ + + L+ VN K ++T L A G ++ L+E GA+
Sbjct: 144 TPLMWAAYR-THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202
Query: 193 LNITNHYNNSCLMIAAYK 210
++ N S L +A +
Sbjct: 203 VDAQNIKGESALDLAKQR 220
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 34/129 (26%)
Query: 83 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 142
+ LV AG DV K T L A + R+D+VKY I GA
Sbjct: 26 RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA------------------- 66
Query: 143 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 202
++ L G D+N STPL A G L +V L+++GAD ++ + S
Sbjct: 67 ------IVDQL---GGDLN------STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCS 111
Query: 203 CLMIAAYKG 211
C+ +AA G
Sbjct: 112 CIHLAAQFG 120
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GHLS++ L+ GAD + + + A G IV YLI G D+++ + + L
Sbjct: 87 GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKT-QSTPLRAACYDGRLDIVKYLIEHGADLNI 127
M AAY+ + + L+ VN K ++T L A G ++ L+E GA+++
Sbjct: 147 MWAAYR-THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA 205
Query: 128 TNHYNNSCLMIAAYK 142
N S L +A +
Sbjct: 206 QNIKGESALDLAKQR 220
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN TPL A G L+IV+ L++HGAD+N + + +
Sbjct: 24 AGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
L +AA GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 84 LHLAAT--VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN TPL A G L+IV+ L++HGAD+N + + +
Sbjct: 24 AGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
L +AA GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 84 LHLAAT--VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N + + L +AA +G HL +++ L+ GADVN
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRG--HLEIVEVLLKHGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
TPL A G L+IV+ L+E+GAD+N + + + I+ G L+ I
Sbjct: 76 RDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N + + L +AA +G HL +++ L+ GADVN
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRG--HLEIVEVLLKHGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
TPL A G L+IV+ L+E+GAD+N + + + I+ G
Sbjct: 76 RDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N + N+ L +AA HL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAA--DYDHLEIVEVLLKHGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
STPL A G L+IV+ L++HGAD+N + + + I+ G L+ I
Sbjct: 76 HDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N + N+ L +AA HL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAA--DYDHLEIVEVLLKHGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
STPL A G L+IV+ L++HGAD+N + + + I+ G
Sbjct: 76 HDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLR-AACYDGRLDIVKYLIEHGADLNITNHYNNS 66
AG ++ L+ GADVN + + +TPL AA YD L+IV+ L++HGAD+N ++ ++
Sbjct: 24 AGQDDEVRILMANGADVNANDRKGNTPLHLAADYD-HLEIVEVLLKHGADVNAHDNDGST 82
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
L +AA GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 83 PLHLAAL--FGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 4/112 (3%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLR-AACYDGRLDIVKYLIEHGADLNITNHYNNS 134
AG ++ L+ GADVN + + +TPL AA YD L+IV+ L++HGAD+N ++ ++
Sbjct: 24 AGQDDEVRILMANGADVNANDRKGNTPLHLAADYD-HLEIVEVLLKHGADVNAHDNDGST 82
Query: 135 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
L +AA GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 83 PLHLAAL--FGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 31/227 (13%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
+G + L+ GAD+N++ T L AC D +D+VK+L+E+GA++N + N
Sbjct: 50 SGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD--NEGW 107
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD------------------ 109
+ + A G+L + + L+ GA V TPL A +
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE 167
Query: 110 -GRLDIVKYLIEHGADLNITNHYNN--------SCLMIAAYKGAGHLSVIKTLVHAGADV 160
R + + ++ + H N+ + L +AA K G+ V+K L+ A DV
Sbjct: 168 AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK--GYTEVLKLLIQARYDV 225
Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
N TPL AA + G+ + + L+E+ D+ N + +A
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 88/201 (43%), Gaps = 29/201 (14%)
Query: 37 AACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHST 96
AAC G + V L+E GAD+N N + L A ++ ++K LV GA++N
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACID--DNVDMVKFLVENGANINQPD 103
Query: 97 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI------------------ 138
PL AA G LDI +YLI GA + N ++ L I
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163
Query: 139 ----AAYKGAGH--LSVIKTLVHAG--ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG 190
AA K L + +++G DV H+ K+ T L A G +++K LI+
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHA-KSGGTALHVAAAKGYTEVLKLLIQAR 222
Query: 191 ADLNITNHYNNSCLMIAAYKG 211
D+NI ++ + L AA+ G
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWG 243
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 66 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 125
+ L +AA KG + V+K L+ A DVN TPL AA + G+ + + L+E+ D+
Sbjct: 201 TALHVAAAKG--YTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Query: 126 NITNHYNNSCLMIAAYKGAGHLSVIK 151
N + +A G+L ++
Sbjct: 259 EAVNKVGQTAFDVADEDILGYLEELQ 284
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N + Y + L +A G HL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG--HLEIVEVLLKNGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
TPL A + G L+I + L++HGAD+N + + + I+ G L+ I
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEI 131
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N + Y + L +A G HL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG--HLEIVEVLLKNGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
TPL A + G L+I + L++HGAD+N + + + I+ G
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN + TPL A G L+IV+ L+++GAD+N + +
Sbjct: 24 AGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
L +AA+ GHL + + L+ GADVN K T + +G D+ + L
Sbjct: 84 LHLAAF--IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN + TPL A G L+IV+ L+++GAD+N + +
Sbjct: 24 AGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
L +AA+ GHL + + L+ GADVN K T + +G D+ + L
Sbjct: 84 LHLAAF--IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 28 TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH 87
+K +TPL A +G + VK L+ GAD+N + N+ L +AA GH ++K L+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN--GHAEIVKLLLA 63
Query: 88 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
GADVN +K +TP A +G +IVK L GAD+N
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 96 TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH 155
+K +TPL A +G + VK L+ GAD+N + N+ L +AA G H ++K L+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG--HAEIVKLLLA 63
Query: 156 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 194
GADVN +K +TP A +G +IVK L GAD+N
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GH +K L+ GADVN +K +TPL A +G +IVK L+ GAD+N + N+
Sbjct: 20 GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPE 79
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVN 93
+A K GH ++K L GADVN
Sbjct: 80 HLA--KKNGHHEIVKLLDAKGADVN 102
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
GH +K L+ GADVN +K +TPL A +G +IVK L+ GAD+N + N+
Sbjct: 20 GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPE 79
Query: 137 MIAAYKGAGHLSVIKTLVHAGADVN 161
+A K GH ++K L GADVN
Sbjct: 80 HLA--KKNGHHEIVKLLDAKGADVN 102
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
GH +K L+ GADVN +K +TPL A +G +IVK L+ GAD+N + N+
Sbjct: 20 GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPE 79
Query: 205 MIAAYKG 211
+A G
Sbjct: 80 HLAKKNG 86
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 164 TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+K +TPL A +G + VK L+ GAD+N + N+ L +AA G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG 53
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN + TPL A G L+IV+ L+++GAD+N +++ +
Sbjct: 24 AGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITP 83
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
L +AA + GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 84 LHLAAIR--GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN + TPL A G L+IV+ L+++GAD+N +++ +
Sbjct: 24 AGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITP 83
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
L +AA +G HL +++ L+ GADVN K T + +G D+ + L
Sbjct: 84 LHLAAIRG--HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N + + L +AA GHL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQ--LGHLEIVEVLLKYGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
TPL A G L+IV+ L++HGAD+N + + + I+ G L+ I
Sbjct: 76 EDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N + + L +AA GHL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQ--LGHLEIVEVLLKYGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
TPL A G L+IV+ L++HGAD+N + + + I+ G
Sbjct: 76 EDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 23 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 82
D+N +PL AC +GR +V+ LI GA +N+ N +++ L +AA GH ++
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA--SHGHRDIV 83
Query: 83 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY 131
+ L+ AD+N + + PL AC+ G+ + + L+ +GA ++I N Y
Sbjct: 84 QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY 132
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 91 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
D+N +PL AC +GR +V+ LI GA +N+ N +++ L +AA GH ++
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA--SHGHRDIV 83
Query: 151 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY 199
+ L+ AD+N + + PL AC+ G+ + + L+ +GA ++I N Y
Sbjct: 84 QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY 132
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 39 CYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 97
C +G V+ +++ DLN + + S L A +G +V++ L+ GA +N +
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRS--AVVEMLIMRGARINVMNR 65
Query: 98 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG 157
TPL A G DIV+ L+++ AD+N N + N L A + G V + LV G
Sbjct: 66 GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ--VAEDLVANG 123
Query: 158 ADVNHSTKTQSTPLRAA 174
A V+ K P+ A
Sbjct: 124 ALVSICNKYGEMPVDKA 140
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G +V++ L+ GA +N + TPL A G DIV+ L+++ AD+N N + N L
Sbjct: 45 GRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPL 104
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA 106
A + G V + LV GA V+ K P+ A
Sbjct: 105 HYACFWGQDQ--VAEDLVANGALVSICNKYGEMPVDKA 140
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 107 CYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
C +G V+ +++ DLN + + S L A +G +V++ L+ GA +N +
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRS--AVVEMLIMRGARINVMNR 65
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID 213
TPL A G DIV+ L+++ AD+N N + N L A + G D
Sbjct: 66 GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 113
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 23 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 82
D+N +PL AC +GR +V+ LI GA +N+ N +++ L +AA GH ++
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA--SHGHRDIV 88
Query: 83 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY 131
+ L+ AD+N + + PL AC+ G+ + + L+ +GA ++I N Y
Sbjct: 89 QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY 137
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 91 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
D+N +PL AC +GR +V+ LI GA +N+ N +++ L +AA GH ++
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA--SHGHRDIV 88
Query: 151 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY 199
+ L+ AD+N + + PL AC+ G+ + + L+ +GA ++I N Y
Sbjct: 89 QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY 137
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 39 CYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 97
C +G V+ +++ DLN + + S L A +G +V++ L+ GA +N +
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRS--AVVEMLIMRGARINVMNR 70
Query: 98 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG 157
TPL A G DIV+ L+++ AD+N N + N L A + G V + LV G
Sbjct: 71 GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ--VAEDLVANG 128
Query: 158 ADVNHSTKTQSTPLRAA 174
A V+ K P+ A
Sbjct: 129 ALVSICNKYGEMPVDKA 145
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 107 CYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
C +G V+ +++ DLN + + S L A +G +V++ L+ GA +N +
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRS--AVVEMLIMRGARINVMNR 70
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID 213
TPL A G DIV+ L+++ AD+N N + N L A + G D
Sbjct: 71 GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G +V++ L+ GA +N + TPL A G DIV+ L+++ AD+N N + N L
Sbjct: 50 GRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPL 109
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA 106
A + G V + LV GA V+ K P+ A
Sbjct: 110 HYACFWGQDQ--VAEDLVANGALVSICNKYGEMPVDKA 145
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GA T+ S L +AA G H S + L+ AG +
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYG--HFSTTEVLLRAGVSRDA 62
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
TK TPL A +G +IV+ L++HGAD+N + + L A H V++ L+
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH--NHQEVVELLI 120
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
GADV+ +K T + +G D+ + L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GH S + L+ AG + TK TPL A +G +IV+ L++HGAD+N + + L
Sbjct: 45 GHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTAL 104
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
A H V++ L+ GADV+ +K T + +G D+ + L
Sbjct: 105 HWATEH--NHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GA T+ S L +AA G H S + L+ AG +
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYG--HFSTTEVLLRAGVSRDA 62
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
TK TPL A +G +IV+ L++HGAD+N + + L A
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWA 107
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G + + T + +NH+ + TPL A G++ +V++L+++GAD + S L
Sbjct: 14 GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 73
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
+A KG + ++K L+ G DVN TPL A + + VK L+E GAD I
Sbjct: 74 SLACSKG--YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131
Query: 129 NH--YNNSCLMIA 139
YN+ L +A
Sbjct: 132 TDSGYNSMDLAVA 144
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
G + + T + +NH+ + TPL A G++ +V++L+++GAD + S L
Sbjct: 14 GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 73
Query: 137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 196
+A KG + ++K L+ G DVN TPL A + + VK L+E GAD I
Sbjct: 74 SLACSKG--YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131
Query: 197 NH--YNNSCLMIA 207
YN+ L +A
Sbjct: 132 TDSGYNSMDLAVA 144
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
G + + T + +NH+ + TPL A G++ +V++L+++GAD + S L
Sbjct: 14 GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 73
Query: 205 MIAAYKG 211
+A KG
Sbjct: 74 SLACSKG 80
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G + + T + +NH+ + TPL A G++ +V++L+++GAD + S L
Sbjct: 12 GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 71
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
+A KG + ++K L+ G DVN TPL A + + VK L+E GAD I
Sbjct: 72 SLACSKG--YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 129
Query: 129 NH--YNNSCLMIA 139
YN+ L +A
Sbjct: 130 TDSGYNSMDLAVA 142
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
G + + T + +NH+ + TPL A G++ +V++L+++GAD + S L
Sbjct: 12 GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 71
Query: 137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 196
+A KG + ++K L+ G DVN TPL A + + VK L+E GAD I
Sbjct: 72 SLACSKG--YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 129
Query: 197 NH--YNNSCLMIA 207
YN+ L +A
Sbjct: 130 TDSGYNSMDLAVA 142
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
G + + T + +NH+ + TPL A G++ +V++L+++GAD + S L
Sbjct: 12 GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 71
Query: 205 MIAAYKG 211
+A KG
Sbjct: 72 SLACSKG 78
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G + + T + +NH+ + TPL A G++ +V++L+++GAD + S L
Sbjct: 30 GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 89
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
+A KG + ++K L+ G DVN TPL A + + VK L+E GAD I
Sbjct: 90 SLACSKG--YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 147
Query: 129 NH--YNNSCLMIA 139
YN+ L +A
Sbjct: 148 TDSGYNSMDLAVA 160
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
G + + T + +NH+ + TPL A G++ +V++L+++GAD + S L
Sbjct: 30 GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 89
Query: 137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 196
+A KG + ++K L+ G DVN TPL A + + VK L+E GAD I
Sbjct: 90 SLACSKG--YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 147
Query: 197 NH--YNNSCLMIA 207
YN+ L +A
Sbjct: 148 TDSGYNSMDLAVA 160
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
G + + T + +NH+ + TPL A G++ +V++L+++GAD + S L
Sbjct: 30 GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 89
Query: 205 MIAAYKG 211
+A KG
Sbjct: 90 SLACSKG 96
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN K TPL A + L+IV+ L+++GAD+N + +
Sbjct: 24 AGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETP 83
Query: 68 L-MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
L ++A Y GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 84 LHLVAMY---GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN K TPL A + L+IV+ L+++GAD+N + +
Sbjct: 24 AGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETP 83
Query: 136 L-MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
L ++A Y GHL +++ L+ GADVN K T + +G D+ + L
Sbjct: 84 LHLVAMY---GHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N + + L +AA HL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMND--HLEIVEVLLKNGADVNA 75
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
TPL G L+IV+ L++HGAD+N + + + I+ G L+ I
Sbjct: 76 IDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N + + L +AA HL +++ L+ GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMND--HLEIVEVLLKNGADVNA 75
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
TPL G L+IV+ L++HGAD+N + + + I+ G
Sbjct: 76 IDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 106/271 (39%), Gaps = 67/271 (24%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
++ A + ++ L + + S +STPL A R+ IV+ L++HGAD++
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 61 NH-----YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIV 115
+ +N+C +Y GH V + L+ GA VN Q TPL A R+++
Sbjct: 88 DKGGLVPLHNAC----SY---GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVC 140
Query: 116 KYLIEHGADLNITNHYNNSCLMIAA---------YKGAGH-------------------L 147
L+ HGAD + N + S + +A Y+ GH L
Sbjct: 141 SLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL 200
Query: 148 SVI---------------------------KTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
+I + L+ GA+VN K TPL A
Sbjct: 201 EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHN 260
Query: 181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
D+++ L +HGA +N + + L AA G
Sbjct: 261 DVMEVLHKHGAKMNALDSLGQTALHRAALAG 291
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 13/154 (8%)
Query: 59 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
+T Y L+ AA G ++ L + + S +STPL A R+ IV+ L
Sbjct: 19 LTGEYKKDELLEAARSG-NEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLL 77
Query: 119 IEHGADLNITNH-----YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA 173
++HGAD++ + +N+C +Y GH V + L+ GA VN Q TPL
Sbjct: 78 LQHGADVHAKDKGGLVPLHNAC----SY---GHYEVTELLLKHGACVNAMDLWQFTPLHE 130
Query: 174 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
A R+++ L+ HGAD + N + S + +A
Sbjct: 131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 90/244 (36%), Gaps = 74/244 (30%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
GH V + L+ GA VN Q TPL A R+++ L+ HGAD + N + S +
Sbjct: 102 GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAV 161
Query: 69 MIAA---------YKGAGH-------------------LSVI------------------ 82
+A Y+ GH L +I
Sbjct: 162 DMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVAS 221
Query: 83 ---------KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 133
+ L+ GA+VN K TPL A D+++ L +HGA +N +
Sbjct: 222 LHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ 281
Query: 134 SCLMIAAYKGAGHLSVIKTLVHAGADVN-----------------HSTKTQSTPLRAACY 176
+ L AA AGHL + L+ G+D + ++STP+R +
Sbjct: 282 TALHRAAL--AGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTPMRTSDV 339
Query: 177 DGRL 180
D RL
Sbjct: 340 DYRL 343
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Query: 11 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLM 69
+ + K L+ GAD+N +P A GR +I+ Y+++H DLN N Y + L+
Sbjct: 52 IEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALI 111
Query: 70 IAAYKGAGHLSVIKTLVHAG-ADVNHSTKTQSTPLRAAC--YDGR---LDIVKYLIEHGA 123
AA K GH+ +K L+ G D++ T L A +G DIVK L+E+GA
Sbjct: 112 PAAEK--GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169
Query: 124 DLNITNHYNNSCLMIAAYKGAGHLSVI 150
D +I ++ + + A KG +S I
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKI 196
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 5/162 (3%)
Query: 32 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
+TPL A ++ ++I K LI+ GAD+N+ N ++S + A +G + + L HA D
Sbjct: 40 NTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEI-LAYMLKHATPD 98
Query: 92 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHG-ADLNITNHYNNSCLMIAAYKGAG---HL 147
+N + L A G +D VK L+E G D++ N + + L+ A G +
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158
Query: 148 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
++K L+ GAD + + T + A G +I K L ++
Sbjct: 159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 65 NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA- 123
N+ L IA + + + K L+ GAD+N +P A GR +I+ Y+++H
Sbjct: 40 NTPLNIAVHNN--DIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP 97
Query: 124 DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG-ADVNHSTKTQSTPLRAAC--YDGRL 180
DLN N Y + L+ AA KG H+ +K L+ G D++ T L A +G
Sbjct: 98 DLNKHNRYGGNALIPAAEKG--HIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ 155
Query: 181 ---DIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
DIVK L+E+GAD +I ++ + + A KG
Sbjct: 156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG 189
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 25 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 84
N+ TPL AC G + + L+E+ L S +I A K L + +
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKN-NRLGIAEK 86
Query: 85 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA 144
L+ G++VN + TPL + G ++ +L+EHGA++N N + L++A+ G
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
++K L+ GAD++ T T +A GR +++K E
Sbjct: 147 SE--IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 58 NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY 117
N + YN + LM+A G + I LV + ST L A + RL I +
Sbjct: 29 NYRDSYNRTPLMVACMLGMEN--AIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEK 86
Query: 118 LIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD 177
L+ G+++N + + LM + G +S L+ GA+VN TPL A
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF--LLEHGANVNDRNLEGETPLIVASKY 144
Query: 178 GRLDIVKYLIEHGADL 193
GR +IVK L+E GAD+
Sbjct: 145 GRSEIVKKLLELGADI 160
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 10 HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 69
L + + L+ G++VN + TPL + G ++ +L+EHGA++N N + L+
Sbjct: 80 RLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLI 139
Query: 70 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+A+ G ++K L+ GAD++ T T +A GR +++K E
Sbjct: 140 VASKYGRSE--IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 93 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
N+ TPL AC G + + L+E+ L S +I A K L + +
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKN-NRLGIAEK 86
Query: 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
L+ G++VN + TPL + G ++ +L+EHGA++N N + L++A+ G
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG 145
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 31 QSTPLRAACYDGRLDIVKYLIEHGADLNITNH-----YNNSCLMIAAYKGAGHLSVIKTL 85
QSTPL A R+ +V+YL++HGAD++ + +N+C +Y GH V + L
Sbjct: 46 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC----SY---GHYEVAELL 98
Query: 86 VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
V GA VN + + TPL A G+ +I K L++HGAD N N+ L
Sbjct: 99 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 99 QSTPLRAACYDGRLDIVKYLIEHGADLNITNH-----YNNSCLMIAAYKGAGHLSVIKTL 153
QSTPL A R+ +V+YL++HGAD++ + +N+C +Y GH V + L
Sbjct: 46 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC----SY---GHYEVAELL 98
Query: 154 VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
V GA VN + + TPL A G+ +I K L++HGAD N N+ L
Sbjct: 99 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 7 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
G +SV++ L+ GADV+ K PL AC G ++ + L++HGA +N+ + + +
Sbjct: 55 GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 114
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
L AA K G + K L+ GAD + +TPL DG DI L
Sbjct: 115 PLHEAAAK--GKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLL 163
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 75 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 134
G +SV++ L+ GADV+ K PL AC G ++ + L++HGA +N+ + + +
Sbjct: 55 GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 114
Query: 135 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
L AA K G + K L+ GAD + +TPL DG DI L
Sbjct: 115 PLHEAAAK--GKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLL 163
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 143 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 202
G +SV++ L+ GADV+ K PL AC G ++ + L++HGA +N+ + + +
Sbjct: 55 GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 114
Query: 203 CLMIAAYKG 211
L AA KG
Sbjct: 115 PLHEAAAKG 123
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 31 QSTPLRAACYDGRLDIVKYLIEHGADLNITNH-----YNNSCLMIAAYKGAGHLSVIKTL 85
QSTPL A R+ +V+YL++HGAD++ + +N+C +Y GH V + L
Sbjct: 44 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC----SY---GHYEVAELL 96
Query: 86 VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
V GA VN + + TPL A G+ +I K L++HGAD N N+ L
Sbjct: 97 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 99 QSTPLRAACYDGRLDIVKYLIEHGADLNITNH-----YNNSCLMIAAYKGAGHLSVIKTL 153
QSTPL A R+ +V+YL++HGAD++ + +N+C +Y GH V + L
Sbjct: 44 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC----SY---GHYEVAELL 96
Query: 154 VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
V GA VN + + TPL A G+ +I K L++HGAD N N+ L
Sbjct: 97 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 7 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
G +SV++ L+ GADV+ K PL AC G ++ + L++HGA +N+ + + +
Sbjct: 53 GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 112
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
L AA K G + K L+ GAD + +TPL DG DI L
Sbjct: 113 PLHEAAAK--GKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLL 161
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 75 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 134
G +SV++ L+ GADV+ K PL AC G ++ + L++HGA +N+ + + +
Sbjct: 53 GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 112
Query: 135 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
L AA K G + K L+ GAD + +TPL DG DI L
Sbjct: 113 PLHEAAAK--GKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLL 161
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 143 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 202
G +SV++ L+ GADV+ K PL AC G ++ + L++HGA +N+ + + +
Sbjct: 53 GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 112
Query: 203 CLMIAAYKG 211
L AA KG
Sbjct: 113 PLHEAAAKG 121
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 31 QSTPLRAACYDGRLDIVKYLIEHGADLNITNH-----YNNSCLMIAAYKGAGHLSVIKTL 85
QSTPL A R+ +V+YL++HGAD++ + +N+C +Y GH V + L
Sbjct: 42 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC----SY---GHYEVAELL 94
Query: 86 VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
V GA VN + + TPL A G+ +I K L++HGAD N N+ L
Sbjct: 95 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 99 QSTPLRAACYDGRLDIVKYLIEHGADLNITNH-----YNNSCLMIAAYKGAGHLSVIKTL 153
QSTPL A R+ +V+YL++HGAD++ + +N+C +Y GH V + L
Sbjct: 42 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC----SY---GHYEVAELL 94
Query: 154 VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
V GA VN + + TPL A G+ +I K L++HGAD N N+ L
Sbjct: 95 VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 7 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
G +SV++ L+ GADV+ K PL AC G ++ + L++HGA +N+ + + +
Sbjct: 51 GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 110
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
L AA K G + K L+ GAD + +TPL DG DI L
Sbjct: 111 PLHEAAAK--GKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLL 159
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 75 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 134
G +SV++ L+ GADV+ K PL AC G ++ + L++HGA +N+ + + +
Sbjct: 51 GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 110
Query: 135 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
L AA K G + K L+ GAD + +TPL DG DI L
Sbjct: 111 PLHEAAAK--GKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLL 159
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 143 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 202
G +SV++ L+ GADV+ K PL AC G ++ + L++HGA +N+ + + +
Sbjct: 51 GYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 110
Query: 203 CLMIAAYKG 211
L AA KG
Sbjct: 111 PLHEAAAKG 119
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 19/208 (9%)
Query: 15 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL-MIAAY 73
K + AGADVN ++TPL A R +V YL + GAD I N S L AA
Sbjct: 150 KECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAAN 209
Query: 74 KGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIV---KYLIEHGADLNITNH 130
+ G D+ + T L ++ D V K L+E GA ++
Sbjct: 210 RDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVD---- 265
Query: 131 YNNSCLMIAA-YKG------AGHLS---VIKTLV-HAGADVNHSTKTQSTPLRAACYDGR 179
Y+ + + YKG A +S ++K LV G++ + + TP+ A +GR
Sbjct: 266 YDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGR 325
Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIA 207
+++V YLI+ GA + + +++ +A
Sbjct: 326 IEVVXYLIQQGASVEAVDATDHTARQLA 353
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%)
Query: 151 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 208
K + AGADVN ++TPL A R +V YL + GAD I N S L AA
Sbjct: 150 KECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAA 207
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 45/226 (19%)
Query: 33 TPLRAACYDGRLDIVKYLI----EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA 88
TPL A G L V L+ + G +L+I N+ + L +A SV++ LV A
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP--SVVRLLVTA 68
Query: 89 GAD---------------VNHSTKT-------QSTP----LRAACYDGRL---------- 112
GA H + T + P L A YDG
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 113 -DIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 171
+ V+ L+E GAD++ + + +I A + LS+++ L+ GA+VN + S+ L
Sbjct: 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVEN-NSLSMVQLLLQHGANVNAQMYSGSSAL 187
Query: 172 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA-AYKGIDVGR 216
+A G L +V+ L+ GAD ++ N +N++ LM+A + + ID+ R
Sbjct: 188 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 12 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA----DLNITNHYNNSC 67
SV++ LV AGA + T AC ++ L++ A DL N+ +
Sbjct: 60 SVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNH-STKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
L +A ++ L+ GAD++ K+ +PL A + L +V+ L++HGA++N
Sbjct: 120 LHVAVNTECQE--TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 177
Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 184
+ +S L A+ G G L +++TLV +GAD + TPL A +DI++
Sbjct: 178 AQMYSGSSALHSAS--GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 11 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
LS+++ L+ GA+VN + S+ L +A G L +V+ L+ GAD ++ N +N++ LM+
Sbjct: 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222
Query: 71 AAYK 74
A +
Sbjct: 223 ARSR 226
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 7 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 48
G G L +++TLV +GAD + TPL A +DI++
Sbjct: 192 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 59 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
TNH + L IA+ KG + ++ L+ G+D N TPL AC G L +V+ L
Sbjct: 5 FTNHRGETLLHIASIKGD--IPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 119 IEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 161
++H A +N T + N+S L AA GH+ ++K L+ GA N
Sbjct: 63 LQHKALVNTTGYQNDSPLHDAAKN--GHVDIVKLLLSYGASRN 103
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 32 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
T L A G + V+YL+++G+D N+ +H + L A GHL V++ L+ A
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEAC--NHGHLKVVELLLQHKAL 68
Query: 92 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
VN + +PL A +G +DIVK L+ +GA N N
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 100 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 159
T L A G + V+YL+++G+D N+ +H + L A GHL V++ L+ A
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEAC--NHGHLKVVELLLQHKAL 68
Query: 160 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 197
VN + +PL A +G +DIVK L+ +GA N N
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
TNH + L IA+ KG + ++ L+ G+D N TPL AC G L +V+ L
Sbjct: 5 FTNHRGETLLHIASIKGD--IPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 187 IEHGADLNITNHYNNSCLMIAAYKG-IDVGRV 217
++H A +N T + N+S L AA G +D+ ++
Sbjct: 63 LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKL 94
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 61
IA+ KG + ++ L+ G+D N TPL AC G L +V+ L++H A +N T
Sbjct: 16 IASIKGD--IPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 62 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 93
+ N+S L AA GH+ ++K L+ GA N
Sbjct: 74 YQNDSPLHDAAKN--GHVDIVKLLLSYGASRN 103
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 61
GHL V++ L+ A VN + +PL A +G +DIVK L+ +GA N N
Sbjct: 54 GHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 6/201 (2%)
Query: 12 SVIKTLVHAGADV-NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
+VI ++ GA + N + +T T L A R D K L+E AD NI ++ + L
Sbjct: 38 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 97
Query: 71 AAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
A A V + L+ A D++ +TPL A +++ LI AD+N +
Sbjct: 98 AVSADAQ--GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 155
Query: 130 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
S L AA + L+ GA+ + + TPL A +G + K L++H
Sbjct: 156 DLGKSALHWAAAVNN--VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 213
Query: 190 GADLNITNHYNNSCLMIAAYK 210
A+ +IT+H + IA +
Sbjct: 214 FANRDITDHMDRLPRDIAQER 234
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 19/206 (9%)
Query: 21 GADVNHSTKTQSTPLR-AACYDGRLD------------IVKYLIEHGADL-NITNHYNNS 66
G DVN TPL A+C G L+ ++ I GA L N T+ +
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DL 125
L +AA K L+ A AD N TPL AA + + LI + A DL
Sbjct: 61 ALHLAARYSRS--DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 118
Query: 126 NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY 185
+ H + L++AA +++ L+++ ADVN + L A +D
Sbjct: 119 DARMHDGTTPLILAARLAVE--GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 176
Query: 186 LIEHGADLNITNHYNNSCLMIAAYKG 211
L+++GA+ ++ N+ + L +AA +G
Sbjct: 177 LLKNGANKDMQNNREETPLFLAAREG 202
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 6/201 (2%)
Query: 12 SVIKTLVHAGADV-NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
+VI ++ GA + N + +T T L A R D K L+E AD NI ++ + L
Sbjct: 37 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 96
Query: 71 AAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
A A V + L+ A D++ +TPL A +++ LI AD+N +
Sbjct: 97 AVSADAQ--GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 154
Query: 130 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
S L AA + L+ GA+ + + TPL A +G + K L++H
Sbjct: 155 DLGKSALHWAAAVNN--VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212
Query: 190 GADLNITNHYNNSCLMIAAYK 210
A+ +IT+H + IA +
Sbjct: 213 FANRDITDHMDRLPRDIAQER 233
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 19/204 (9%)
Query: 23 DVNHSTKTQSTPLR-AACYDGRLD------------IVKYLIEHGADL-NITNHYNNSCL 68
DVN TPL A+C G L+ ++ I GA L N T+ + L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNI 127
+AA K L+ A AD N TPL AA + + LI + A DL+
Sbjct: 62 HLAARYSRS--DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187
H + L++AA +++ L+++ ADVN + L A +D L+
Sbjct: 120 RMHDGTTPLILAARLAVE--GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 177
Query: 188 EHGADLNITNHYNNSCLMIAAYKG 211
++GA+ ++ N+ + L +AA +G
Sbjct: 178 KNGANKDMQNNREETPLFLAAREG 201
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex
With V-1
Length = 123
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G L +K V G DVN + + PL A G+L+I+++L+ GAD+N + ++ + L
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 69 MIAAYKGAGHLSVIKTLVHAGAD 91
+ A Y+ GH+S +K L+ GAD
Sbjct: 78 LSAVYE--GHVSCVKLLLSKGAD 98
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
G L +K V G DVN + + PL A G+L+I+++L+ GAD+N + ++ + L
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 137 MIAAYKGAGHLSVIKTLVHAGAD 159
+ A Y+ GH+S +K L+ GAD
Sbjct: 78 LSAVYE--GHVSCVKLLLSKGAD 98
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 38 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 97
A +G LD VK + G D+N T L AA G L +++ L+ GAD+N K
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA--DCGQLEILEFLLLKGADINAPDK 71
Query: 98 TQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
TPL +A Y+G + VK L+ GAD +
Sbjct: 72 HHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
A +G LD VK + G D+N T L AA G L +++ L+ GAD+N K
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA--DCGQLEILEFLLLKGADINAPDK 71
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
TPL +A Y+G + VK L+ GAD +
Sbjct: 72 HHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
G L +K V G DVN + + PL A G+L+I+++L+ GAD+N + ++ + L
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 205 MIAAYKG 211
+ A Y+G
Sbjct: 78 LSAVYEG 84
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
G L +++ L+ GAD+N K TPL +A Y+G + VK L+ GAD +
Sbjct: 51 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 6/201 (2%)
Query: 12 SVIKTLVHAGADV-NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
+VI ++ GA + N + +T +T L A R D K L+E AD NI ++ + L
Sbjct: 37 AVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHA 96
Query: 71 AAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
A A V + L+ A D++ +TPL A +++ LI AD+N +
Sbjct: 97 AVSADAQ--GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 154
Query: 130 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
S L AA + L+ GA+ + + TPL A +G + K L++H
Sbjct: 155 DLGKSALHWAAAVNN--VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212
Query: 190 GADLNITNHYNNSCLMIAAYK 210
A+ +IT+H + IA +
Sbjct: 213 FANRDITDHMDRLPRDIAQER 233
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 21/205 (10%)
Query: 23 DVNHSTKTQSTPLR-AACYDGRLD------------IVKYLIEHGADL-NITNHYNNSCL 68
DVN TPL A+C G L+ ++ I GA L N T+ + L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 69 -MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLN 126
+ AAY + K L+ A AD N TPL AA + + LI + A DL+
Sbjct: 62 HLAAAYSRS---DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
H + L++AA +++ L+++ ADVN + L A +D L
Sbjct: 119 ARMHDGTTPLILAARLAVE--GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 187 IEHGADLNITNHYNNSCLMIAAYKG 211
+++GA+ ++ N+ + L +AA +G
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREG 201
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G L +K V G DVN + + PL A G+L+I+++L+ GAD+N + ++ + L
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 69 MIAAYKGAGHLSVIKTLVHAGAD 91
+ A Y+ GH+S +K L+ GAD
Sbjct: 73 LSAVYE--GHVSCVKLLLSKGAD 93
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
G L +K V G DVN + + PL A G+L+I+++L+ GAD+N + ++ + L
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 137 MIAAYKGAGHLSVIKTLVHAGAD 159
+ A Y+ GH+S +K L+ GAD
Sbjct: 73 LSAVYE--GHVSCVKLLLSKGAD 93
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 38 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 97
A +G LD VK + G D+N T L AA G L +++ L+ GAD+N K
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA--DCGQLEILEFLLLKGADINAPDK 66
Query: 98 TQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
TPL +A Y+G + VK L+ GAD +
Sbjct: 67 HHITPLLSAVYEGHVSCVKLLLSKGADKTV 96
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
A +G LD VK + G D+N T L AA G L +++ L+ GAD+N K
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA--DCGQLEILEFLLLKGADINAPDK 66
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
TPL +A Y+G + VK L+ GAD +
Sbjct: 67 HHITPLLSAVYEGHVSCVKLLLSKGADKTV 96
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
G L +K V G DVN + + PL A G+L+I+++L+ GAD+N + ++ + L
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 205 MIAAYKG 211
+ A Y+G
Sbjct: 73 LSAVYEG 79
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
G L +++ L+ GAD+N K TPL +A Y+G + VK L+ GAD +
Sbjct: 46 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 6/201 (2%)
Query: 12 SVIKTLVHAGADV-NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
+VI ++ GA + N + +T T L A R D K L+E AD NI ++ + L
Sbjct: 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 64
Query: 71 AAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
A A V + L+ A D++ +TPL A +++ LI AD+N +
Sbjct: 65 AVSADAQ--GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 122
Query: 130 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
S L AA L+ GA+ + + TPL A +G + K L++H
Sbjct: 123 DLGKSALHWAAAVNNV--DAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180
Query: 190 GADLNITNHYNNSCLMIAAYK 210
A+ +IT+H + IA +
Sbjct: 181 FANRDITDHMDRLPRDIAQER 201
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 6/168 (3%)
Query: 46 IVKYLIEHGADL-NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLR 104
++ I GA L N T+ + L +AA K L+ A AD N TPL
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRS--DAAKRLLEASADANIQDNMGRTPLH 63
Query: 105 AACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS 163
AA + + LI + A DL+ H + L++AA +++ L+++ ADVN
Sbjct: 64 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE--GMLEDLINSHADVNAV 121
Query: 164 TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+ L A +D L+++GA+ ++ N+ + L +AA +G
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 169
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
N + + L + + G ++ L+ GA N + ++P+ A G LD +K L+E
Sbjct: 33 NRFGKTALQVMMF---GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE 89
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
HGAD+N+ + + +A + GH +V+ L A +D++ TPL A G
Sbjct: 90 HGADVNVPDGTGALPIHLAVQE--GHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQ 146
Query: 181 DIVKYLIEH 189
D+V L H
Sbjct: 147 DLVDILQGH 155
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G ++ L+ GA N + ++P+ A G LD +K L+EHGAD+N+ + +
Sbjct: 46 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 105
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 121
+A + GH +V+ L A +D++ TPL A G D+V L H
Sbjct: 106 HLAVQE--GHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
N + + L + + G ++ L+ GA N + ++P+ A G LD +K L+E
Sbjct: 33 NRFGKTALQVMMF---GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE 89
Query: 189 HGADLNITNHYNNSCLMIAAYKG 211
HGAD+N+ + + +A +G
Sbjct: 90 HGADVNVPDGTGALPIHLAVQEG 112
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
N + + L + + G ++ L+ GA N + ++P+ A G LD +K L+E
Sbjct: 39 NRFGKTALQVMMF---GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE 95
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
HGAD+N+ + + +A + GH +V+ L A +D++ TPL A G
Sbjct: 96 HGADVNVPDGTGALPIHLAVQE--GHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQ 152
Query: 181 DIVKYLIEH 189
D+V L H
Sbjct: 153 DLVDILQGH 161
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G ++ L+ GA N + ++P+ A G LD +K L+EHGAD+N+ + +
Sbjct: 52 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 111
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 121
+A + GH +V+ L A +D++ TPL A G D+V L H
Sbjct: 112 HLAVQE--GHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH 161
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
N + + L + + G ++ L+ GA N + ++P+ A G LD +K L+E
Sbjct: 39 NRFGKTALQVMMF---GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE 95
Query: 189 HGADLNITNHYNNSCLMIAAYKG 211
HGAD+N+ + + +A +G
Sbjct: 96 HGADVNVPDGTGALPIHLAVQEG 118
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 4/200 (2%)
Query: 12 SVIKTLVHAGADV-NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
SVI ++ GA + N + +T T L A R D K L+E AD I ++ + L
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHA 61
Query: 71 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 130
A A + I L + D++ +TPL A +++ LI AD+N +
Sbjct: 62 AVSADAQGVFQI-LLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDD 120
Query: 131 YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG 190
S L AA L+ GA+ + + TPL A +G + K L++H
Sbjct: 121 LGKSALHWAAAVNNV--DAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHF 178
Query: 191 ADLNITNHYNNSCLMIAAYK 210
A+ +IT+H + IA +
Sbjct: 179 ANRDITDHMDRLPRDIAQER 198
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 6/168 (3%)
Query: 46 IVKYLIEHGADL-NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLR 104
++ I GA L N T+ + L +AA K L+ A AD TPL
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRS--DAAKRLLEASADAXIQDNMGRTPLH 60
Query: 105 AACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS 163
AA + + L+ + A DL+ H + L++AA +++ L+++ ADVN
Sbjct: 61 AAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALE--GMLEDLINSHADVNAV 118
Query: 164 TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+ L A +D L+++GA+ ++ N+ + L +AA +G
Sbjct: 119 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREG 166
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADV K STPL A +G L++VK L+E GAD+N + + +
Sbjct: 16 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTA 75
Query: 68 LMIAAYKGAGHLSVI 82
I+ G L+ I
Sbjct: 76 FDISIDNGNEDLAEI 90
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADV K STPL A +G L++VK L+E GAD+N + + +
Sbjct: 16 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTA 75
Query: 136 LMIAAYKGAGHLSVI 150
I+ G L+ I
Sbjct: 76 FDISIDNGNEDLAEI 90
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 203
AG ++ L+ GADV K STPL A +G L++VK L+E GAD+N + + +
Sbjct: 16 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTA 75
Query: 204 LMIAAYKG 211
I+ G
Sbjct: 76 FDISIDNG 83
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 19 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH 78
H G+D+ L A G+ D V+ L+ +GAD+ + ++ L +AA G H
Sbjct: 1 HMGSDL-------GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG--H 51
Query: 79 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
L V+K L+ AGADVN K T + +G D+ + L
Sbjct: 52 LEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 87 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH 146
H G+D+ L A G+ D V+ L+ +GAD+ + ++ L +AA G H
Sbjct: 1 HMGSDL-------GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG--H 51
Query: 147 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
L V+K L+ AGADVN K T + +G D+ + L
Sbjct: 52 LEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 50
GHL V+K L+ AGADVN K T + +G D+ + L
Sbjct: 50 GHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
N + + L + + G +V L+ GA N + ++P+ A G LD +K L+E
Sbjct: 41 NRFGKTALQVMMF---GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVE 97
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
HGAD+N + + + +A + GH SV+ L +D++H + TPL A G
Sbjct: 98 HGADVNALDSTGSLPIHLAIRE--GHSSVVSFLA-PESDLHHRDASGLTPLELARQRGAQ 154
Query: 181 DIVKYLIEH 189
+++ L H
Sbjct: 155 NLMDILQGH 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G +V L+ GA N + ++P+ A G LD +K L+EHGAD+N + + +
Sbjct: 54 GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPI 113
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 121
+A + GH SV+ L +D++H + TPL A G +++ L H
Sbjct: 114 HLAIRE--GHSSVVSFLA-PESDLHHRDASGLTPLELARQRGAQNLMDILQGH 163
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
N + + L + + G +V L+ GA N + ++P+ A G LD +K L+E
Sbjct: 41 NRFGKTALQVMMF---GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVE 97
Query: 189 HGADLNITNHYNNSCLMIAAYKG 211
HGAD+N + + + +A +G
Sbjct: 98 HGADVNALDSTGSLPIHLAIREG 120
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
N + + L + + G +V L+ GA N + ++P+ A G LD +K L+E
Sbjct: 39 NRFGKTALQVMMF---GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVE 95
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
HGAD+N + + + +A + GH SV+ L +D++H + TPL A G
Sbjct: 96 HGADVNALDSTGSLPIHLAIRE--GHSSVVSFLA-PESDLHHRDASGLTPLELARQRGAQ 152
Query: 181 DIVKYLIEH 189
+++ L H
Sbjct: 153 NLMDILQGH 161
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G +V L+ GA N + ++P+ A G LD +K L+EHGAD+N + + +
Sbjct: 52 GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPI 111
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 121
+A + GH SV+ L +D++H + TPL A G +++ L H
Sbjct: 112 HLAIRE--GHSSVVSFLA-PESDLHHRDASGLTPLELARQRGAQNLMDILQGH 161
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
N + + L + + G +V L+ GA N + ++P+ A G LD +K L+E
Sbjct: 39 NRFGKTALQVMMF---GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVE 95
Query: 189 HGADLNITNHYNNSCLMIAAYKG 211
HGAD+N + + + +A +G
Sbjct: 96 HGADVNALDSTGSLPIHLAIREG 118
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Query: 17 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKG 75
L+ AGAD N T TPL AA + + + L+ + A +LN H + L++AA
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
+++ L+ A AD+N + + T L A + V L+ H A+ + + + +
Sbjct: 130 IE--GMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETP 187
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
L +AA +G+ S K L+ A+ + P A DIV+ L EH
Sbjct: 188 LFLAAREGSYEAS--KALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH 239
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 19/225 (8%)
Query: 1 MIAAYKGAG-------------HLSVIKTLVHAGADVNHST-KTQSTPLRAACYDGRLDI 46
MIAA +G G VI L+ GA++N + KT T L A R D
Sbjct: 7 MIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADA 66
Query: 47 VKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRA 105
K L++ GAD N ++ + L A A + V + L+ A ++N +TPL
Sbjct: 67 AKRLLDAGADANSQDNTGRTPLHAAVAADA--MGVFQILLRNRATNLNARMHDGTTPLIL 124
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
A +V+ LI AD+N ++ + L AA I + HA D
Sbjct: 125 AARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA--QDD 182
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 210
TPL A +G + K L+++ A+ IT+H + +A+ +
Sbjct: 183 KDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASER 227
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 24/150 (16%)
Query: 66 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 125
+ LMIAA +G G + G D+ ++ D ++ L+ GA+L
Sbjct: 4 TPLMIAAVRGGG--------LDTGEDIENN------------EDSTAQVISDLLAQGAEL 43
Query: 126 NIT-NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 184
N T + + L +AA K L+ AGAD N T TPL AA + + +
Sbjct: 44 NATMDKTGETSLHLAARFAR--ADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQ 101
Query: 185 YLIEHGA-DLNITNHYNNSCLMIAAYKGID 213
L+ + A +LN H + L++AA I+
Sbjct: 102 ILLRNRATNLNARMHDGTTPLILAARLAIE 131
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 125
L I G L +K + G + VN + TPL A G ++ V++L+E GAD
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 126 NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY 185
+I S L +A+ G+ ++ L+ D+N TPL A + + V+
Sbjct: 63 HILAKERESALSLAST--GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEA 120
Query: 186 LIEHGADL 193
L+ GADL
Sbjct: 121 LLARGADL 128
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 9 GHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
G L +K + G + VN + TPL A G ++ V++L+E GAD +I S
Sbjct: 13 GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESA 72
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 125
L +A+ G+ ++ L+ D+N TPL A + + V+ L+ GADL
Sbjct: 73 LSLAST--GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADL 128
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 5/135 (3%)
Query: 42 GRLDIVKYLIEHGADL-NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS 100
G LD +K + G +L N + + L+ A+ G + ++ L+ GAD + K +
Sbjct: 13 GELDQLKEHLRKGDNLVNKPDERGFTPLIWAS--AFGEIETVRFLLEWGADPHILAKERE 70
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
+ L A G DIV L+E D+NI + + L+ A + H+ ++ L+ GAD+
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVH--GNHVKCVEALLARGADL 128
Query: 161 NHSTKTQSTPLRAAC 175
+ TP+ A
Sbjct: 129 TTEADSGYTPMDLAV 143
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G + ++ L+ GAD + K + + L A G DIV L+E D+NI + + L
Sbjct: 47 GEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 107
+ A + H+ ++ L+ GAD+ + TP+ A
Sbjct: 107 LYAVH--GNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 110 GRLDIVKYLIEHGADL-NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS 168
G LD +K + G +L N + + L+ A+ G + ++ L+ GAD + K +
Sbjct: 13 GELDQLKEHLRKGDNLVNKPDERGFTPLIWAS--AFGEIETVRFLLEWGADPHILAKERE 70
Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY 209
+ L A G DIV L+E D+NI + + L+ A +
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVH 111
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 135 CLMIAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 193
L I G L +K + G + VN + TPL A G ++ V++L+E GAD
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 194 NITNHYNNSCLMIAAYKG 211
+I S L +A+ G
Sbjct: 63 HILAKERESALSLASTGG 80
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 42 GRLDIVKYLIEHGADL-NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS 100
G LD +K + G +L N + + L+ A+ G + ++ L+ GAD + K +
Sbjct: 13 GELDQLKEHLRKGDNLVNKPDERGFTPLIWAS--AFGEIETVRFLLEWGADPHILAKERE 70
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
+ L A G DIV L+E D+NI + +N ++ A +G H+ ++ L+ GAD+
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYD-WNGGTPLLYAVRG-NHVKCVEALLARGADL 128
Query: 161 NHSTKTQSTPLRAAC 175
+ TP+ A
Sbjct: 129 TTEADSGYTPMDLAV 143
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 125
L I G L +K + G + VN + TPL A G ++ V++L+E GAD
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 126 NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY 185
+I S L +A+ G+ ++ L+ D+N TPL A + V+
Sbjct: 63 HILAKERESALSLAST--GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 186 LIEHGADL 193
L+ GADL
Sbjct: 121 LLARGADL 128
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 9 GHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
G L +K + G + VN + TPL A G ++ V++L+E GAD +I S
Sbjct: 13 GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESA 72
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 125
L +A+ G+ ++ L+ D+N TPL A + V+ L+ GADL
Sbjct: 73 LSLAST--GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G + ++ L+ GAD + K + + L A G DIV L+E D+NI + +N
Sbjct: 47 GEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD-WNGGTP 105
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 107
++ A +G H+ ++ L+ GAD+ + TP+ A
Sbjct: 106 LLYAVRG-NHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 110 GRLDIVKYLIEHGADL-NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS 168
G LD +K + G +L N + + L+ A+ G + ++ L+ GAD + K +
Sbjct: 13 GELDQLKEHLRKGDNLVNKPDERGFTPLIWAS--AFGEIETVRFLLEWGADPHILAKERE 70
Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+ L A G DIV L+E D+NI + +N ++ A +G
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYD-WNGGTPLLYAVRG 112
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 135 CLMIAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 193
L I G L +K + G + VN + TPL A G ++ V++L+E GAD
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 194 NITNHYNNSCLMIAAYKG 211
+I S L +A+ G
Sbjct: 63 HILAKERESALSLASTGG 80
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADVN K TPL A +G L+IV+ L++ GAD+N + + +
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTA 71
Query: 68 LMIAAYKGAGHLSVI 82
I+ G L+ I
Sbjct: 72 FDISIDNGNEDLAEI 86
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADVN K TPL A +G L+IV+ L++ GAD+N + + +
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTA 71
Query: 136 LMIAAYKGAGHLSVI 150
I+ G L+ I
Sbjct: 72 FDISIDNGNEDLAEI 86
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 203
AG ++ L+ GADVN K TPL A +G L+IV+ L++ GAD+N + + +
Sbjct: 12 AGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTA 71
Query: 204 LMIAAYKG 211
I+ G
Sbjct: 72 FDISIDNG 79
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+N + + L +AA +G HL +++ L+ AGADVN
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--HLEIVEVLLKAGADVNA 63
Query: 95 STKTQSTPLRAACYDGRLDIVKYL 118
K T + +G D+ + L
Sbjct: 64 QDKFGKTAFDISIDNGNEDLAEIL 87
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+N + + L +AA +G HL +++ L+ AGADVN
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREG--HLEIVEVLLKAGADVNA 63
Query: 163 STKTQSTPLRAACYDGRLDIVKYL 186
K T + +G D+ + L
Sbjct: 64 QDKFGKTAFDISIDNGNEDLAEIL 87
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 50
GHL +++ L+ AGADVN K T + +G D+ + L
Sbjct: 46 GHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
AG ++ L+ GADV K STPL A +G L++VK L+E GAD+ + + +
Sbjct: 34 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA 93
Query: 68 LMIAAYKGAGHLSVI 82
I+ G L+ I
Sbjct: 94 FDISIDNGNEDLAEI 108
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
AG ++ L+ GADV K STPL A +G L++VK L+E GAD+ + + +
Sbjct: 34 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA 93
Query: 136 LMIAAYKGAGHLSVI 150
I+ G L+ I
Sbjct: 94 FDISIDNGNEDLAEI 108
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 203
AG ++ L+ GADV K STPL A +G L++VK L+E GAD+ + + +
Sbjct: 34 AGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA 93
Query: 204 LMIAAYKG 211
I+ G
Sbjct: 94 FDISIDNG 101
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A G+ D V+ L+ +GAD+ + ++ L +AA G HL V+K L+ AGADV
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG--HLEVVKLLLEAGADVXA 85
Query: 95 STKTQSTPLRAACYDGRLDIVKYL 118
K T + +G D+ + L
Sbjct: 86 QDKFGKTAFDISIDNGNEDLAEIL 109
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A G+ D V+ L+ +GAD+ + ++ L +AA G HL V+K L+ AGADV
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG--HLEVVKLLLEAGADVXA 85
Query: 163 STKTQSTPLRAACYDGRLDIVKYL 186
K T + +G D+ + L
Sbjct: 86 QDKFGKTAFDISIDNGNEDLAEIL 109
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 50
GHL V+K L+ AGADV K T + +G D+ + L
Sbjct: 68 GHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 9 GHLSVIKTLVHA--GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
G+L V+K+L D+N T T L A ++ ++LIE+GA + I + +N
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGAD 124
L AA G L +I+ L G VN K TPL A +G D L+E +GA+
Sbjct: 143 PLHRAA--SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200
Query: 125 LNITNH 130
++ ++
Sbjct: 201 YDLVDN 206
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 8/158 (5%)
Query: 34 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 93
PL AC + V+ L+ L + + + + H + L+ +VN
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVN 63
Query: 94 ---HSTKTQSTPLRAACYDGRLDIVKYLIEH--GADLNITNHYNNSCLMIAAYKGAGHLS 148
+ + TP AC G L++VK L + DLN + +CL +A G
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFE 121
Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
V + L+ GA V K PL A G L +++ L
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 33 TPLRAACYDGRLDIVKYLIEH--GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 90
TP AC G L++VK L + DLN + +CL +A G V + L+ GA
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFEVSQFLIENGA 131
Query: 91 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD-LNITNHYNNSCLMIAAYKGAGHLSV 149
V K PL A G L +++ L G +N + + L A +G G +V
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 150 I 150
+
Sbjct: 192 L 192
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 113 DIVKYLIEHGADLNITNHYNNS---CLMIAAYKGAGHLSVIKTLVHA--GADVNHSTKTQ 167
+I +L+ ++N+ ++ ++S IA G+L V+K+L D+N T
Sbjct: 50 EITSFLLSKMENVNLDDYPDDSGWTPFHIAC--SVGNLEVVKSLYDRPLKPDLNKITNQG 107
Query: 168 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
T L A ++ ++LIE+GA + I + +N L AA G
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 9 GHLSVIKTLVHA--GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
G+L V+K+L D+N T T L A ++ ++LIE+GA + I + +N
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGAD 124
L AA G L +I+ L G VN K TPL A +G D L+E +GA+
Sbjct: 143 PLHRAA--SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200
Query: 125 LNITNH 130
++ ++
Sbjct: 201 YDLVDN 206
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 8/158 (5%)
Query: 34 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 93
PL AC + V+ L+ L + + + + H + L+ +VN
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVN 63
Query: 94 ---HSTKTQSTPLRAACYDGRLDIVKYLIEH--GADLNITNHYNNSCLMIAAYKGAGHLS 148
+ + TP AC G L++VK L + DLN + +CL +A G
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFE 121
Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
V + L+ GA V K PL A G L +++ L
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 33 TPLRAACYDGRLDIVKYLIEH--GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 90
TP AC G L++VK L + DLN + +CL +A G V + L+ GA
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFEVSQFLIENGA 131
Query: 91 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD-LNITNHYNNSCLMIAAYKGAGHLSV 149
V K PL A G L +++ L G +N + + L A +G G +V
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 150 I 150
+
Sbjct: 192 L 192
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 113 DIVKYLIEHGADLNITNHYNNS---CLMIAAYKGAGHLSVIKTLVHA--GADVNHSTKTQ 167
+I +L+ ++N+ ++ ++S IA G+L V+K+L D+N T
Sbjct: 50 EITSFLLSKMENVNLDDYPDDSGWTPFHIAC--SVGNLEVVKSLYDRPLKPDLNKITNQG 107
Query: 168 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
T L A ++ ++LIE+GA + I + +N L AA G
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 9 GHLSVIKTLVHA--GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
G+L V+K+L D+N T T L A ++ ++LIE+GA + I + +N
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGAD 124
L AA G L +I+ L G VN K TPL A +G D L+E +GA+
Sbjct: 143 PLHRAA--SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200
Query: 125 LNITNH 130
++ ++
Sbjct: 201 YDLVDN 206
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 8/158 (5%)
Query: 34 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 93
PL AC + V+ L+ L + + + + H + L+ +VN
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVN 63
Query: 94 ---HSTKTQSTPLRAACYDGRLDIVKYLIEH--GADLNITNHYNNSCLMIAAYKGAGHLS 148
+ + TP AC G L++VK L + DLN + +CL +A G
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFE 121
Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
V + L+ GA V K PL A G L +++ L
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 33 TPLRAACYDGRLDIVKYLIEH--GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 90
TP AC G L++VK L + DLN + +CL +A G V + L+ GA
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV--GKKWFEVSQFLIENGA 131
Query: 91 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD-LNITNHYNNSCLMIAAYKGAGHLSV 149
V K PL A G L +++ L G +N + + L A +G G +V
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 150 I 150
+
Sbjct: 192 L 192
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 113 DIVKYLIEHGADLNITNHYNNS---CLMIAAYKGAGHLSVIKTLVHA--GADVNHSTKTQ 167
+I +L+ ++N+ ++ ++S IA G+L V+K+L D+N T
Sbjct: 50 EITSFLLSKMENVNLDDYPDDSGWTPFHIAC--SVGNLEVVKSLYDRPLKPDLNKITNQG 107
Query: 168 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
T L A ++ ++LIE+GA + I + +N L AA G
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 42 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 101
G +I + L+ GA+ ++ + N+ + AA AG L ++TL+ ADVN +
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAAR--AGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 102 PLRAACYDGRLDIVKYLIEHGA 123
PL A +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 169
G +I + L+ GA+ ++ + N+ + AA AG L ++TL+ ADVN +
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAAR--AGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 170 PLRAACYDGRLDIVKYLIEHGA 191
PL A +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 55
AG L ++TL+ ADVN + PL A +G L +V++L++H A
Sbjct: 80 AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 24 VNHSTKTQSTPLRAA-----CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH 78
+ H + + PL A +G D+V+ +I D ++ N + L A AGH
Sbjct: 25 IAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC--AGH 82
Query: 79 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 123
++K LV G +VN + TPL A + + K+L+E GA
Sbjct: 83 TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 92 VNHSTKTQSTPLRAA-----CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH 146
+ H + + PL A +G D+V+ +I D ++ N + L A AGH
Sbjct: 25 IAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC--AGH 82
Query: 147 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
++K LV G +VN + TPL A + + K+L+E GA
Sbjct: 83 TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 55
AGH ++K LV G +VN + TPL A + + K+L+E GA
Sbjct: 80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 24 VNHSTKTQSTPLRA---ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80
+ H + + PL + +G D+V+ +I D ++ N + L A AGH
Sbjct: 27 IAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC--AGHTE 84
Query: 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 123
++K LV G +VN + TPL A + + K+L+E GA
Sbjct: 85 IVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 92 VNHSTKTQSTPLRA---ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 148
+ H + + PL + +G D+V+ +I D ++ N + L A AGH
Sbjct: 27 IAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC--AGHTE 84
Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
++K LV G +VN + TPL A + + K+L+E GA
Sbjct: 85 IVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 55
AGH ++K LV G +VN + TPL A + + K+L+E GA
Sbjct: 80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 19/171 (11%)
Query: 11 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
+ VI+ + A +N Q TPL A + +I + L+ G D + + N+ L +
Sbjct: 22 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 81
Query: 71 AAYKG----AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
A +G G L+ T H + + + T L A G L IV+ L+ GAD+N
Sbjct: 82 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 141
Query: 127 ITNHYNNSCLMIAAYKGAGHLSV-------IKTLVHAGADVNHSTKTQSTP 170
N + A HL+V + L+ GADVN T +P
Sbjct: 142 AQEPCNG--------RTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQ-STPLRAACYDGRLDIVKYLIEHGADLN 58
G+L +++ LV GADVN T L A D+V L++ GAD+N
Sbjct: 125 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 175
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L I + A + VI+ + A +N Q TPL A + +I + L+ G D +
Sbjct: 11 LAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL 70
Query: 196 TNHYNNSCLMIAAYKG 211
+ N+ L +A +G
Sbjct: 71 RDFRGNTPLHLACEQG 86
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 112 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 171
+++++ + A LN N+ + L +A ++ + L+ AG D +TPL
Sbjct: 22 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA--EALLGAGCDPELRDFRGNTPL 79
Query: 172 RAACYDGRLDIVKYLIEHGAD------LNITNHYNNSCLMIAAYKG 211
AC G L V L + L TN+ ++CL +A+ G
Sbjct: 80 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 125
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 42 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 101
G +I + L+ GA+ ++ + + + AA AG L ++TL+ ADVN +
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--AGQLDTLQTLLEFQADVNIEDNEGNL 105
Query: 102 PLRAACYDGRLDIVKYLIEHGA 123
PL A +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 169
G +I + L+ GA+ ++ + + + AA AG L ++TL+ ADVN +
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--AGQLDTLQTLLEFQADVNIEDNEGNL 105
Query: 170 PLRAACYDGRLDIVKYLIEHGA 191
PL A +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 55
AG L ++TL+ ADVN + PL A +G L +V++L++H A
Sbjct: 80 AGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 42 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 101
G +I + L+ GA+ ++ + + + AA AG L ++TL+ ADVN +
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--AGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 102 PLRAACYDGRLDIVKYLIEHGA 123
PL A +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 169
G +I + L+ GA+ ++ + + + AA AG L ++TL+ ADVN +
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--AGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 170 PLRAACYDGRLDIVKYLIEHGA 191
PL A +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 55
AG L ++TL+ ADVN + PL A +G L +V++L++H A
Sbjct: 80 AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 42 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 101
G +I + L+ GA+ ++ + + + AA AG L ++TL+ ADVN +
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--AGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 102 PLRAACYDGRLDIVKYLIEHGA 123
PL A +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 169
G +I + L+ GA+ ++ + + + AA AG L ++TL+ ADVN +
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--AGFLDTLQTLLEFQADVNIEDNEGNL 105
Query: 170 PLRAACYDGRLDIVKYLIEHGA 191
PL A +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 55
AG L ++TL+ ADVN + PL A +G L +V++L++H A
Sbjct: 80 AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 42 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 101
G +I + L+ GA+ ++ + + + AA AG L ++TL+ ADVN +
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--AGFLDTLQTLLENQADVNIEDNEGNL 105
Query: 102 PLRAACYDGRLDIVKYLIEHGA 123
PL A +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 169
G +I + L+ GA+ ++ + + + AA AG L ++TL+ ADVN +
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR--AGFLDTLQTLLENQADVNIEDNEGNL 105
Query: 170 PLRAACYDGRLDIVKYLIEHGA 191
PL A +G L +V++L++H A
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTA 127
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 55
AG L ++TL+ ADVN + PL A +G L +V++L++H A
Sbjct: 80 AGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 19/171 (11%)
Query: 11 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
+ VI+ + A +N Q TPL A + +I + L+ G D + + N+ L +
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 84
Query: 71 AAYKG----AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
A +G G L+ T H + + + T L A G L IV+ L+ GAD+N
Sbjct: 85 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144
Query: 127 ITNHYNNSCLMIAAYKGAGHLSV-------IKTLVHAGADVNHSTKTQSTP 170
N + A HL+V + L+ GADVN T +P
Sbjct: 145 AQEPCNG--------RTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQ-STPLRAACYDGRLDIVKYLIEHGADLN 58
G+L +++ LV GADVN T L A D+V L++ GAD+N
Sbjct: 128 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L I + A + VI+ + A +N Q TPL A + +I + L+ G D +
Sbjct: 14 LAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL 73
Query: 196 TNHYNNSCLMIAAYKG 211
+ N+ L +A +G
Sbjct: 74 RDFRGNTPLHLACEQG 89
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 112 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 171
+++++ + A LN N+ + L +A ++ + L+ AG D +TPL
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA--EALLGAGCDPELRDFRGNTPL 82
Query: 172 RAACYDGRLDIVKYLIEHGAD------LNITNHYNNSCLMIAAYKG 211
AC G L V L + L TN+ ++CL +A+ G
Sbjct: 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN- 93
L A G+++ V+ L+E GAD N N + + + G V + L+ GA+ N
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM---GSAQVAELLLLHGAEPNC 72
Query: 94 HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 143
T + P+ A +G LD + L GA L++ + + + +A +G
Sbjct: 73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG 122
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 70 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
+A G + ++ L+ AGAD N + P++ G + + L+ HGA+ N +
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCAD 74
Query: 130 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
+ + A + G L + L AGA ++ P+ A G DI +YL
Sbjct: 75 PATLTRPVHDAAR-EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 27 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 86
S + + L A GR++ V+ L+E GA+ N N Y + + G V + L+
Sbjct: 8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM---GSARVAELLL 64
Query: 87 HAGADVN-HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAG 145
GA+ N T + P+ A +G LD + L GA L++ + + L + + G
Sbjct: 65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR--LPVDLAEELG 122
Query: 146 HLSVIKTL 153
H V + L
Sbjct: 123 HRDVARYL 130
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI-EHGADLNITNHYNNSC 67
G+LS ++ + VN K ST L AC+ G DIV+ L + +LN N ++
Sbjct: 84 GNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTA 143
Query: 68 LMIAAYKGAGHLSVIKTLVHAGA 90
L AA+K G+ +++ L+ GA
Sbjct: 144 LHAAAWK--GYADIVQLLLAKGA 164
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI-EHGADLNITNHYNNSC 135
G+LS ++ + VN K ST L AC+ G DIV+ L + +LN N ++
Sbjct: 84 GNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTA 143
Query: 136 LMIAAYKGAGHLSVIKTLVHAGA 158
L AA+K G+ +++ L+ GA
Sbjct: 144 LHAAAWK--GYADIVQLLLAKGA 164
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI-EHGADLNITNHYNNSC 203
G+LS ++ + VN K ST L AC+ G DIV+ L + +LN N ++
Sbjct: 84 GNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTA 143
Query: 204 LMIAAYKG 211
L AA+KG
Sbjct: 144 LHAAAWKG 151
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
RA+ + L + + HGAD+N N ++ + A L + L+ GA+VN
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 139
+ PL A G + ++ GADL + L IA
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
RA+ + L + + HGAD+N N ++ + A L + L+ GA+VN
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
+ PL A G + ++ GADL + L IA
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
RA+ + L + + HGAD+N N ++ + A L + L+ GA+VN
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 139
+ PL A G + ++ GADL + L IA
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
RA+ + L + + HGAD+N N ++ + A L + L+ GA+VN
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
+ PL A G + ++ GADL + L IA
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Query: 27 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 86
S + + L A GR++ V+ L+E GA N N Y + + G V + L+
Sbjct: 8 SMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMM---GSARVAELLL 64
Query: 87 HAGADVN-HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAG 145
GA+ N T + P+ A +G LD + L GA L++ + + L + + G
Sbjct: 65 LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR--LPVDLAEELG 122
Query: 146 HLSVIKTL 153
H V + L
Sbjct: 123 HRDVARYL 130
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
RA+ + L + + HGAD+N N ++ + A L + L+ GA+VN
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 139
+ PL A G + ++ GADL + L IA
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
RA+ + L + + HGAD+N N ++ + A L + L+ GA+VN
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
+ PL A G + ++ GADL + L IA
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 32 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
TP A + L+E D++ + + L+ A G G ++ L AGAD
Sbjct: 46 ETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVA--GLGSDKCVRLLAEAGAD 102
Query: 92 VNH-STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 139
++H + T L A R ++V+ L+E GAD+ + + + L +A
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 100 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 159
TP A + L+E D++ + + L+ A G G ++ L AGAD
Sbjct: 46 ETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVA--GLGSDKCVRLLAEAGAD 102
Query: 160 VNH-STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
++H + T L A R ++V+ L+E GAD+ + + + L +A
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 7 GAGHLSVIKTLVHAGADVNH-STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 65
G G ++ L AGAD++H + T L A R ++V+ L+E GAD+ + +
Sbjct: 86 GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGL 145
Query: 66 SCLMIA 71
+ L +A
Sbjct: 146 TALELA 151
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 32 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
TP A + L+E D++ + + L+ A G G ++ L AGAD
Sbjct: 45 ETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVA--GLGSDKCVRLLAEAGAD 101
Query: 92 VNH-STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 139
++H + T L A R ++V+ L+E GAD+ + + + L +A
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 100 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 159
TP A + L+E D++ + + L+ A G G ++ L AGAD
Sbjct: 45 ETPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVA--GLGSDKCVRLLAEAGAD 101
Query: 160 VNH-STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
++H + T L A R ++V+ L+E GAD+ + + + L +A
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 7 GAGHLSVIKTLVHAGADVNH-STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 65
G G ++ L AGAD++H + T L A R ++V+ L+E GAD+ + +
Sbjct: 85 GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGL 144
Query: 66 SCLMIA 71
+ L +A
Sbjct: 145 TALELA 150
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 32/154 (20%)
Query: 66 SCLMIAAYKGAGHLSVIKTLVHAGADV------NHSTKTQST-------PLRAACYDGRL 112
S L IA K + L +K LV GADV K Q T PL A +
Sbjct: 92 SALHIAIEKRS--LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 113 DIVKYLIE---HGADLNITNHYNNSCL----MIAAYKGAGHLSVIKT---LVHAGADVNH 162
D+V YL+E A L T+ N+ L MIA VI L+ GA +
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209
Query: 163 STKTQS-------TPLRAACYDGRLDIVKYLIEH 189
+ + + TPL+ A +G+++I +++++
Sbjct: 210 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 30/141 (21%)
Query: 11 LSVIKTLVHAGADV------NHSTKTQST-------PLRAACYDGRLDIVKYLIE---HG 54
L +K LV GADV K Q T PL A + D+V YL+E
Sbjct: 103 LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP 162
Query: 55 ADLNITNHYNNSCL----MIAAYKGAGHLSVIKT---LVHAGADVNHSTKTQS------- 100
A L T+ N+ L MIA VI L+ GA + + + +
Sbjct: 163 ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL 222
Query: 101 TPLRAACYDGRLDIVKYLIEH 121
TPL+ A +G+++I +++++
Sbjct: 223 TPLKLAAKEGKIEIFRHILQR 243
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Query: 46 IVKYLIEHGA-DLNITNHYNNSCLMIAAY---KGAGHLSVIKTLVHAGADVNHSTKTQST 101
+V+ L++ G ++ N S +M+ A K + + L G +++ T
Sbjct: 126 VVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQT 185
Query: 102 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 161
L A GR+D+VK L+ AD+N+ + ++ LM A G ++ + L D++
Sbjct: 186 ALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL-LLAVPSCDIS 244
Query: 162 HSTKTQSTPLRAACYDGRLDIVKYL 186
+ + ST L A G+ +I L
Sbjct: 245 LTDRDGSTALMVALDAGQSEIASML 269
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 61
+A K + + L G +++ T L A GR+D+VK L+ AD+N+ +
Sbjct: 154 LATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQD 213
Query: 62 HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
++ LM A G ++ + L D++ + + ST L A G+ +I L
Sbjct: 214 DDGSTALMCACEHGHKEIAGL-LLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSC 203
G + V+K L+ ADVN ST L AC G +I L+ D+++T+ ++
Sbjct: 194 GRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTA 253
Query: 204 LMIAAYKG 211
LM+A G
Sbjct: 254 LMVALDAG 261
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 114 IVKYLIEHGA-DLNITNHYNNSCLMIAAY---KGAGHLSVIKTLVHAGADVNHSTKTQST 169
+V+ L++ G ++ N S +M+ A K + + L G +++ T
Sbjct: 126 VVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQT 185
Query: 170 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
L A GR+D+VK L+ AD+N+ + ++ LM A G
Sbjct: 186 ALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHG 227
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 32 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
+TPL A +++ LI AD+N + S L AA L+ GA+
Sbjct: 16 TTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV--DAAVVLLKNGAN 73
Query: 92 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 142
+ + TPL A +G + K L++H A+ +IT+H + IA +
Sbjct: 74 KDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 124
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 100 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 159
+TPL A +++ LI AD+N + S L AA L+ GA+
Sbjct: 16 TTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV--DAAVVLLKNGAN 73
Query: 160 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 210
+ + TPL A +G + K L++H A+ +IT+H + IA +
Sbjct: 74 KDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 124
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 17 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 74
L+ GA+ + + TPL A +G + K L++H A+ +IT+H + IA +
Sbjct: 67 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 124
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 26/104 (25%)
Query: 34 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL-----------------MIAAYKGA 76
PL A G +IV+ LIEHGAD+ + N+ L ++ +Y G
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183
Query: 77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
HL ++ + TP + A +G + + ++L++
Sbjct: 184 DHLKSLELV---------PNNQGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 26/104 (25%)
Query: 102 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL-----------------MIAAYKGA 144
PL A G +IV+ LIEHGAD+ + N+ L ++ +Y G
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183
Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
HL ++ + TP + A +G + + ++L++
Sbjct: 184 DHLKSLELV---------PNNQGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 170 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206
PL A G +IV+ LIEHGAD+ + N+ L I
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHY-NNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
TPL A ++V+ L + GADLN + L +A A SV++ L+ AGAD
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA--SVLELLLKAGAD 217
Query: 92 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 123
TPL +A + + L HGA
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHY-NNSCLMIAAYKGAGHLSVIKTLVHAGAD 159
TPL A ++V+ L + GADLN + L +A A SV++ L+ AGAD
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA--SVLELLLKAGAD 217
Query: 160 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
TPL +A + + L HGA
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHY-NNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
TPL A ++V+ L + GADLN + L +A A SV++ L+ AGAD
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA--SVLELLLKAGAD 217
Query: 92 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 123
TPL +A + + L HGA
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHY-NNSCLMIAAYKGAGHLSVIKTLVHAGAD 159
TPL A ++V+ L + GADLN + L +A A SV++ L+ AGAD
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA--SVLELLLKAGAD 217
Query: 160 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
TPL +A + + L HGA
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 42 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 101
G L++V+ ++ D + N + L A GA + S++ L+ AGA+VN T
Sbjct: 32 GELEVVQQAVKEMNDPSQPNEEGITALH-NAICGANY-SIVDFLITAGANVNSPDSHGWT 89
Query: 102 PLRAACYDGRLDIVKYLIEHGADLNIT 128
PL A I L++HGA + T
Sbjct: 90 PLHCAASCNDTVICMALVQHGAAIFAT 116
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 169
G L++V+ ++ D + N + L A GA + S++ L+ AGA+VN T
Sbjct: 32 GELEVVQQAVKEMNDPSQPNEEGITALH-NAICGANY-SIVDFLITAGANVNSPDSHGWT 89
Query: 170 PLRAACYDGRLDIVKYLIEHGADLNIT 196
PL A I L++HGA + T
Sbjct: 90 PLHCAASCNDTVICMALVQHGAAIFAT 116
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 12 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
S++ L+ AGA+VN TPL A I L++HGA + T
Sbjct: 68 SIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,387,081
Number of Sequences: 62578
Number of extensions: 299632
Number of successful extensions: 1849
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 517
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)