Query psy8421
Match_columns 237
No_of_seqs 194 out of 2379
Neff 11.3
Searched_HMMs 29240
Date Fri Aug 16 18:28:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyh_A HN1;, notch 1, ankyrin 100.0 5.1E-45 1.8E-49 271.6 21.4 220 2-227 14-248 (253)
2 3b7b_A Euchromatic histone-lys 100.0 2.6E-44 9E-49 265.2 23.1 208 2-213 15-223 (237)
3 2xai_A ASB-9, ankyrin repeat a 100.0 3.3E-44 1.1E-48 268.4 21.5 204 2-211 7-210 (261)
4 1k1a_A B-cell lymphoma 3-encod 100.0 4.4E-44 1.5E-48 264.6 20.2 208 2-213 13-229 (241)
5 3aji_A 26S proteasome non-ATPa 100.0 1.5E-43 5.2E-48 260.2 22.0 208 2-213 10-218 (231)
6 1oy3_D Transcription factor in 100.0 8.7E-44 3E-48 268.8 21.0 207 2-212 13-270 (282)
7 4b93_B Ankyrin repeat domain-c 100.0 9.6E-45 3.3E-49 271.9 15.5 207 2-212 15-230 (269)
8 3d9h_A CDNA FLJ77766, highly s 100.0 3.7E-43 1.3E-47 265.8 21.7 203 2-210 63-265 (285)
9 2dzn_A Probable 26S proteasome 100.0 5.8E-43 2E-47 256.6 21.4 206 2-211 6-219 (228)
10 2f8y_A Notch homolog 1, transl 100.0 1.2E-42 4E-47 254.1 20.6 210 8-223 1-212 (223)
11 1wdy_A 2-5A-dependent ribonucl 100.0 1.3E-41 4.5E-46 257.0 26.2 205 3-211 44-264 (285)
12 1wdy_A 2-5A-dependent ribonucl 100.0 3.8E-41 1.3E-45 254.5 26.7 216 2-223 9-240 (285)
13 3ljn_A Hypothetical protein; a 100.0 2.8E-42 9.6E-47 269.7 21.0 215 2-224 24-266 (364)
14 3utm_A Tankyrase-1; tankyrase, 100.0 2.2E-41 7.6E-46 263.0 24.9 201 3-207 63-320 (351)
15 3eu9_A Huntingtin-interacting 100.0 4.1E-41 1.4E-45 248.3 24.6 216 2-222 13-230 (240)
16 1n11_A Ankyrin; clathrin, BAND 100.0 2.6E-41 8.9E-46 270.2 24.8 208 2-213 183-390 (437)
17 2fo1_E LIN-12 protein; beta-ba 100.0 2.3E-42 7.8E-47 270.8 17.6 219 2-226 129-370 (373)
18 1s70_B 130 kDa myosin-binding 100.0 2.4E-42 8.3E-47 263.1 17.3 205 2-210 44-275 (299)
19 3utm_A Tankyrase-1; tankyrase, 100.0 7.2E-41 2.5E-45 260.1 24.8 219 2-224 28-302 (351)
20 1n11_A Ankyrin; clathrin, BAND 100.0 1.2E-40 4.2E-45 266.3 25.4 216 2-223 150-365 (437)
21 4g8k_A 2-5A-dependent ribonucl 100.0 2.5E-40 8.7E-45 256.0 24.0 219 2-224 29-295 (337)
22 3d9h_A CDNA FLJ77766, highly s 100.0 1.8E-39 6E-44 245.6 23.7 214 2-223 19-243 (285)
23 1oy3_D Transcription factor in 100.0 1.6E-39 5.4E-44 245.4 21.2 194 24-223 2-246 (282)
24 2f8y_A Notch homolog 1, transl 100.0 1.2E-38 4E-43 232.9 24.5 189 2-194 29-218 (223)
25 3b7b_A Euchromatic histone-lys 100.0 1.3E-38 4.4E-43 234.8 23.7 197 22-224 2-199 (237)
26 2rfa_A Transient receptor pote 100.0 4.9E-39 1.7E-43 236.3 20.2 189 2-194 7-224 (232)
27 4gpm_A Engineered protein OR26 100.0 1.7E-38 5.9E-43 221.5 20.1 159 33-195 6-164 (169)
28 3aji_A 26S proteasome non-ATPa 100.0 8.3E-39 2.8E-43 234.9 19.3 188 2-193 44-231 (231)
29 2xai_A ASB-9, ankyrin repeat a 100.0 4.1E-39 1.4E-43 240.8 17.8 203 2-212 40-250 (261)
30 2rfa_A Transient receptor pote 100.0 1.8E-38 6.1E-43 233.3 20.8 190 30-225 2-220 (232)
31 3kea_A K1L; tropism, ANK repea 100.0 4.3E-39 1.5E-43 243.5 18.0 207 7-224 9-217 (285)
32 1ikn_D Protein (I-kappa-B-alph 100.0 4.9E-40 1.7E-44 242.3 12.4 206 1-210 11-229 (236)
33 3hra_A Ankyrin repeat family p 100.0 4.5E-38 1.5E-42 226.3 22.4 179 30-212 4-190 (201)
34 1k1a_A B-cell lymphoma 3-encod 100.0 9.8E-38 3.3E-42 230.5 23.7 193 25-223 3-204 (241)
35 1yyh_A HN1;, notch 1, ankyrin 100.0 4.9E-38 1.7E-42 233.9 21.2 185 2-190 61-246 (253)
36 1sw6_A Regulatory protein SWI6 100.0 1.1E-39 3.7E-44 251.3 11.2 197 3-211 102-327 (327)
37 3hra_A Ankyrin repeat family p 100.0 2.2E-37 7.4E-42 222.7 22.0 185 2-190 9-201 (201)
38 3kea_A K1L; tropism, ANK repea 100.0 7.9E-39 2.7E-43 242.0 14.8 190 2-198 35-226 (285)
39 4b93_B Ankyrin repeat domain-c 100.0 1.1E-38 3.7E-43 239.0 15.4 187 3-193 57-245 (269)
40 4gpm_A Engineered protein OR26 100.0 1.1E-37 3.7E-42 217.5 19.3 157 2-162 8-164 (169)
41 3ljn_A Hypothetical protein; a 100.0 1.2E-38 4.1E-43 249.1 15.0 204 2-211 57-300 (364)
42 4g8k_A 2-5A-dependent ribonucl 100.0 7.6E-37 2.6E-41 236.5 23.0 212 2-224 63-323 (337)
43 2dzn_A Probable 26S proteasome 100.0 8.2E-37 2.8E-41 223.8 21.7 186 31-222 2-194 (228)
44 2etb_A Transient receptor pote 100.0 1.6E-38 5.5E-43 236.9 12.2 192 2-195 6-249 (256)
45 1ikn_D Protein (I-kappa-B-alph 100.0 9.7E-39 3.3E-43 235.3 10.2 193 26-224 3-206 (236)
46 2pnn_A Transient receptor pote 100.0 5.1E-38 1.7E-42 236.3 13.1 200 2-205 17-272 (273)
47 2etb_A Transient receptor pote 100.0 7.7E-38 2.6E-42 233.2 13.4 192 30-225 1-244 (256)
48 1s70_B 130 kDa myosin-binding 100.0 1.8E-36 6.3E-41 230.6 18.3 216 3-224 3-254 (299)
49 2fo1_E LIN-12 protein; beta-ba 100.0 3E-36 1E-40 236.1 19.4 188 2-193 170-372 (373)
50 2pnn_A Transient receptor pote 100.0 5.6E-37 1.9E-41 230.6 13.3 199 21-223 3-254 (273)
51 3eu9_A Huntingtin-interacting 100.0 1.9E-35 6.4E-40 218.0 20.2 190 2-195 46-238 (240)
52 3jxi_A Vanilloid receptor-rela 100.0 8.6E-37 3E-41 228.0 11.4 192 2-195 9-253 (260)
53 3v30_A DNA-binding protein rfx 100.0 1.6E-35 5.5E-40 207.9 16.7 169 31-203 2-171 (172)
54 3jxi_A Vanilloid receptor-rela 100.0 1.8E-36 6.1E-41 226.3 11.9 197 28-228 2-251 (260)
55 2rfm_A Putative ankyrin repeat 100.0 4E-35 1.4E-39 209.4 18.2 163 24-190 28-190 (192)
56 4hbd_A KN motif and ankyrin re 100.0 9.3E-36 3.2E-40 224.2 15.1 185 3-189 81-272 (276)
57 2vge_A RELA-associated inhibit 100.0 1.3E-37 4.3E-42 228.0 2.7 211 14-232 1-219 (229)
58 3v31_A Ankyrin repeat family A 100.0 2.9E-34 1E-38 200.5 18.0 160 30-193 2-161 (167)
59 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.3E-34 7.8E-39 200.0 16.7 158 30-192 4-162 (162)
60 2y1l_E Darpin-8.4; hydrolase-i 100.0 5.6E-34 1.9E-38 199.4 18.8 159 28-190 11-169 (169)
61 4hbd_A KN motif and ankyrin re 100.0 5E-35 1.7E-39 220.2 11.4 188 31-224 76-272 (276)
62 3f6q_A Integrin-linked protein 100.0 1.6E-33 5.5E-38 198.9 17.0 168 29-200 3-171 (179)
63 3v30_A DNA-binding protein rfx 100.0 9.3E-34 3.2E-38 198.8 15.3 165 2-170 6-171 (172)
64 2y1l_E Darpin-8.4; hydrolase-i 100.0 7.2E-33 2.5E-37 193.7 18.9 152 2-157 18-169 (169)
65 1awc_B Protein (GA binding pro 100.0 1.2E-32 4E-37 189.6 17.6 150 32-186 3-152 (153)
66 2rfm_A Putative ankyrin repeat 100.0 9.9E-33 3.4E-37 197.0 17.0 153 57-213 28-180 (192)
67 1ihb_A P18-INK4C(INK6), cyclin 100.0 9.6E-33 3.3E-37 191.8 16.0 153 2-159 9-162 (162)
68 3twr_A Tankyrase-2; ankyrin re 100.0 5.2E-33 1.8E-37 193.7 14.3 160 27-191 4-164 (165)
69 1ycs_B 53BP2, P53BP2; ankyrin 100.0 5.7E-34 2E-38 210.2 8.9 182 29-215 3-196 (239)
70 3f6q_A Integrin-linked protein 100.0 4.4E-32 1.5E-36 191.5 17.9 162 2-167 9-171 (179)
71 3v31_A Ankyrin repeat family A 100.0 2.8E-32 9.6E-37 190.4 16.5 155 2-160 7-161 (167)
72 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1E-31 3.5E-36 185.5 17.3 153 31-189 2-155 (156)
73 1sw6_A Regulatory protein SWI6 100.0 1.5E-33 5.2E-38 217.0 8.4 204 7-224 56-305 (327)
74 1awc_B Protein (GA binding pro 100.0 1.6E-31 5.3E-36 184.0 17.3 147 2-153 6-152 (153)
75 2vge_A RELA-associated inhibit 100.0 6.1E-35 2.1E-39 213.7 -2.6 179 2-187 25-208 (229)
76 3twr_A Tankyrase-2; ankyrin re 100.0 1.9E-30 6.5E-35 180.7 16.4 152 2-158 12-164 (165)
77 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.7E-30 9.3E-35 178.3 16.7 149 2-156 6-155 (156)
78 1ycs_B 53BP2, P53BP2; ankyrin 100.0 2.2E-33 7.4E-38 207.1 0.6 200 2-206 9-224 (239)
79 1d9s_A Cyclin-dependent kinase 100.0 1.1E-29 3.9E-34 171.2 13.6 132 56-192 4-136 (136)
80 1bi7_B P16INK4A, MTS1, multipl 100.0 3.2E-30 1.1E-34 177.9 11.1 138 63-205 11-149 (156)
81 1d9s_A Cyclin-dependent kinase 100.0 1E-29 3.5E-34 171.4 13.1 134 21-159 2-136 (136)
82 3t8k_A Uncharacterized protein 100.0 3.2E-30 1.1E-34 182.5 10.9 163 31-197 6-184 (186)
83 1bi7_B P16INK4A, MTS1, multipl 100.0 6.5E-30 2.2E-34 176.4 10.8 145 25-174 6-151 (156)
84 3t8k_A Uncharacterized protein 100.0 1.5E-29 5.2E-34 179.0 7.0 158 2-163 10-183 (186)
85 2aja_A Ankyrin repeat family p 100.0 2.7E-31 9.1E-36 206.8 -3.2 145 2-158 96-249 (376)
86 1n0r_A 4ANK, 4 ankyrin repeats 100.0 3.3E-27 1.1E-31 156.8 16.1 125 31-192 2-126 (126)
87 1n0r_A 4ANK, 4 ankyrin repeats 100.0 3.8E-27 1.3E-31 156.5 16.3 114 98-213 1-114 (126)
88 2jab_A H10-2-G3; HER2, darpin, 100.0 1.8E-27 6E-32 160.4 13.9 123 30-156 13-135 (136)
89 2jab_A H10-2-G3; HER2, darpin, 100.0 6.2E-27 2.1E-31 157.7 15.0 126 61-190 11-136 (136)
90 2aja_A Ankyrin repeat family p 99.9 9E-31 3.1E-35 203.9 -5.2 181 8-211 76-265 (376)
91 3deo_A Signal recognition part 99.9 6E-29 2E-33 176.0 4.3 164 4-189 6-181 (183)
92 3c5r_A BARD-1, BRCA1-associate 99.9 1.3E-27 4.4E-32 161.3 10.5 131 21-156 1-131 (137)
93 3c5r_A BARD-1, BRCA1-associate 99.9 3.4E-27 1.1E-31 159.2 9.8 125 59-187 5-129 (137)
94 3ui2_A Signal recognition part 99.9 1.2E-26 3.9E-31 171.5 10.9 142 29-192 43-185 (244)
95 2b0o_E UPLC1; arfgap, structur 99.9 5.1E-26 1.7E-30 172.8 11.7 140 64-213 151-299 (301)
96 2b0o_E UPLC1; arfgap, structur 99.9 1.9E-25 6.6E-30 169.6 13.4 142 31-180 151-299 (301)
97 3aaa_C Myotrophin, protein V-1 99.9 2.5E-25 8.7E-30 147.2 12.2 110 97-208 5-114 (123)
98 3aaa_C Myotrophin, protein V-1 99.9 1.5E-25 5.1E-30 148.3 10.6 111 28-140 4-114 (123)
99 3ehr_A Osteoclast-stimulating 99.9 7.4E-26 2.5E-30 164.9 9.8 136 61-200 70-206 (222)
100 3ehr_A Osteoclast-stimulating 99.9 6.9E-26 2.4E-30 165.1 8.9 136 28-167 70-206 (222)
101 3deo_A Signal recognition part 99.9 1.3E-24 4.5E-29 153.6 12.2 133 2-156 48-181 (183)
102 3ui2_A Signal recognition part 99.9 1.8E-24 6E-29 159.8 12.7 135 2-158 49-184 (244)
103 3jue_A Arfgap with coiled-coil 99.9 8.5E-24 2.9E-28 164.1 15.1 163 28-194 196-366 (368)
104 3jue_A Arfgap with coiled-coil 99.9 8.6E-24 2.9E-28 164.1 14.1 148 62-213 197-350 (368)
105 3lvq_E ARF-GAP with SH3 domain 99.9 1.4E-23 4.8E-28 169.9 15.7 129 65-197 133-270 (497)
106 1dcq_A PYK2-associated protein 99.9 1.9E-22 6.5E-27 151.5 20.4 172 17-192 47-263 (278)
107 3lvq_E ARF-GAP with SH3 domain 99.9 1.2E-23 4.2E-28 170.3 14.4 122 3-126 137-267 (497)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.9 4.8E-23 1.6E-27 129.3 12.3 93 30-124 1-93 (93)
109 1dcq_A PYK2-associated protein 99.9 4.7E-23 1.6E-27 154.8 14.1 130 28-159 127-263 (278)
110 2l6b_A NR1C; ankyrin, consensu 99.9 2.1E-23 7.3E-28 136.2 9.7 109 94-204 4-112 (115)
111 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.1E-22 3.9E-27 127.6 12.1 92 99-192 2-93 (93)
112 2l6b_A NR1C; ankyrin, consensu 99.9 5.4E-23 1.8E-27 134.3 8.8 109 26-136 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 1.3E-19 4.3E-24 117.2 9.9 92 25-118 18-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 6.3E-19 2.1E-23 113.9 9.9 89 96-186 21-109 (110)
115 1gp8_A Protein (scaffolding pr 65.3 3.8 0.00013 19.7 1.6 14 37-50 19-32 (40)
116 4g26_A Pentatricopeptide repea 57.8 30 0.001 27.9 6.7 116 2-127 33-175 (501)
117 3eyi_A Z-DNA-binding protein 1 40.3 15 0.00052 20.5 1.6 35 181-224 14-49 (72)
118 3zrh_A Ubiquitin thioesterase 39.7 89 0.003 24.6 6.2 46 7-52 31-90 (454)
119 2k5e_A Uncharacterized protein 37.1 17 0.00059 20.5 1.6 41 179-219 18-59 (73)
120 3mkq_B Coatomer subunit alpha; 32.3 1.2E+02 0.004 20.6 6.5 129 33-188 10-139 (177)
121 4g26_A Pentatricopeptide repea 30.8 72 0.0025 25.6 4.9 101 11-119 90-198 (501)
122 3spa_A Mtrpol, DNA-directed RN 22.9 28 0.00096 31.1 1.2 87 1-94 133-236 (1134)
123 3qil_A Clathrin heavy chain 1; 22.5 47 0.0016 21.0 1.9 30 160-189 28-57 (125)
124 1vk9_A Conserved hypothetical 20.6 74 0.0025 20.9 2.5 47 181-227 95-150 (151)
125 3zrh_A Ubiquitin thioesterase 20.6 3.2E+02 0.011 21.6 8.1 24 36-59 27-50 (454)
No 1
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5.1e-45 Score=271.60 Aligned_cols=220 Identities=25% Similarity=0.277 Sum_probs=182.5
Q ss_pred chhhccCC-------------cHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcH
Q psy8421 2 IAAYKGAG-------------HLSVIKTLVHAGADVNH-STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67 (237)
Q Consensus 2 l~~a~~~g-------------~~~~~~~L~~~~~~~~~-~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 67 (237)
|+.|+..| +.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 14 L~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 93 (253)
T 1yyh_A 14 LMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 93 (253)
T ss_dssp --------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 56677666 99999999999999865 48899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHcCC-CCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCC
Q psy8421 68 LMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH 146 (237)
Q Consensus 68 l~~a~~~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~ 146 (237)
||+|+.. ++.+++++|++.+. +++..+..|.||+|+|+..++.+++++|++.|++++..+..|.||||+|+.. ++
T Consensus 94 L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~--~~ 169 (253)
T 1yyh_A 94 LHAAVSA--DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV--NN 169 (253)
T ss_dssp HHHHHHH--TCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHH--TC
T ss_pred HHHHHHc--CCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CC
Confidence 9999977 99999999999887 8899999999999999999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCcccccccc
Q psy8421 147 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDRYP 226 (237)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~ 226 (237)
.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|+..|.. ++...+.+.++
T Consensus 170 ~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~--~i~~~l~~~~~ 247 (253)
T 1yyh_A 170 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH--DIVRLLDLEHH 247 (253)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH--HHHHHHHC---
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCH--HHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999976 56666665554
Q ss_pred c
Q psy8421 227 S 227 (237)
Q Consensus 227 ~ 227 (237)
.
T Consensus 248 ~ 248 (253)
T 1yyh_A 248 H 248 (253)
T ss_dssp -
T ss_pred h
Confidence 3
No 2
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.6e-44 Score=265.22 Aligned_cols=208 Identities=31% Similarity=0.493 Sum_probs=201.3
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. |+.++
T Consensus 15 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~ 92 (237)
T 3b7b_A 15 LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK--GHYEV 92 (237)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT--TCHHH
T ss_pred HHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc--CCHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999966 99999
Q ss_pred HHHHHHcC-CCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421 82 IKTLVHAG-ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160 (237)
Q Consensus 82 ~~~ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~ 160 (237)
+++|++.+ .+++..+..|.||+|+|+..++.+++++|+++|.+++..+..|.||+|+|+.. ++.+++++|+++|.++
T Consensus 93 ~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~ 170 (237)
T 3b7b_A 93 VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS--GCVDIAEILLAAKCDL 170 (237)
T ss_dssp HHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--CCHHHHHHHHTTTCCT
T ss_pred HHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHC--CCHHHHHHHHHcCCCC
Confidence 99999998 78899999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID 213 (237)
Q Consensus 161 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~ 213 (237)
+.++..|.||||+|+..++.+++++|+++|++++.+|..|+||+|+|+..|..
T Consensus 171 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHH
T ss_pred CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998854
No 3
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.3e-44 Score=268.41 Aligned_cols=204 Identities=26% Similarity=0.384 Sum_probs=195.4
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. |+.++
T Consensus 7 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~ 84 (261)
T 2xai_A 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS--GSWDC 84 (261)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CCHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999977 99999
Q ss_pred HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421 82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 161 (237)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~ 161 (237)
+++|++.|++++. +..|.||+|+|+..++.+++++|+++|.+++..+..|.||+|+|+.. ++.+++++|+++|++++
T Consensus 85 v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~ 161 (261)
T 2xai_A 85 VNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN--QQRACVKKLLESGADVN 161 (261)
T ss_dssp HHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHT--TCHHHHHHHHHHTCCTT
T ss_pred HHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHh--CCHHHHHHHHHcCCCCC
Confidence 9999999999875 45699999999999999999999999999999999999999999988 99999999999999998
Q ss_pred CCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhC
Q psy8421 162 HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211 (237)
Q Consensus 162 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~ 211 (237)
. +..|.||||+|+..++.+++++|+++|++++.+|..|+||+|+|+..+
T Consensus 162 ~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~ 210 (261)
T 2xai_A 162 Q-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES 210 (261)
T ss_dssp C-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC
T ss_pred C-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc
Confidence 5 889999999999999999999999999999999999999999999655
No 4
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4.4e-44 Score=264.58 Aligned_cols=208 Identities=25% Similarity=0.352 Sum_probs=199.1
Q ss_pred chhhccCCcHHHHHHHHH----cCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCC
Q psy8421 2 IAAYKGAGHLSVIKTLVH----AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAG 77 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~----~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~ 77 (237)
|+.|++.|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. +
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~--~ 90 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH--R 90 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--T
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc--C
Confidence 678999999999999997 7899999999999999999999999999999999999999999999999999965 9
Q ss_pred CHHHHHHHHHcCC----CCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCcccc-CCCCchhHHHHHcCCCCHHHHHH
Q psy8421 78 HLSVIKTLVHAGA----DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIAAYKGAGHLSVIKT 152 (237)
Q Consensus 78 ~~~~~~~ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~ 152 (237)
+.+++++|++.+. +++..+..|.+|+|+|+..++.+++++|++.|.+++..+ ..|.||+|+|+.. ++.+++++
T Consensus 91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~ 168 (241)
T 1k1a_A 91 SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN--NSLSMVQL 168 (241)
T ss_dssp CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT--TCHHHHHH
T ss_pred CHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHc--CCHHHHHH
Confidence 9999999999887 788888999999999999999999999999999999888 7899999999988 99999999
Q ss_pred HHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID 213 (237)
Q Consensus 153 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~ 213 (237)
|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|+..|..
T Consensus 169 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~ 229 (241)
T 1k1a_A 169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI 229 (241)
T ss_dssp HHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHH
T ss_pred HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcH
Confidence 9999999999999999999999999999999999999999999999999999999988754
No 5
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.5e-43 Score=260.19 Aligned_cols=208 Identities=29% Similarity=0.415 Sum_probs=198.8
Q ss_pred chhhccCCcHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~-~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 80 (237)
|+.|++.|+++.+++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+.. ++.+
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~ 87 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA--GXDE 87 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH--TCHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc--CHHH
Confidence 6789999999999999988755 677889999999999999999999999999999999999999999999977 9999
Q ss_pred HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160 (237)
Q Consensus 81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~ 160 (237)
++++|++.|.+++..+..|.||+|+|+..++.+++++|+++|.+++..+..|.||+|+|+.. ++.+++++|+++|.++
T Consensus 88 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~ 165 (231)
T 3aji_A 88 IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK--GNLKMVHILLFYKAST 165 (231)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCS
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc--CCHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID 213 (237)
Q Consensus 161 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~ 213 (237)
+.++..|.||||+|+..++.+++++|+++|++++.+|..|+||+++|+..+..
T Consensus 166 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~ 218 (231)
T 3aji_A 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGL 218 (231)
T ss_dssp CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHH
T ss_pred cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999876643
No 6
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=8.7e-44 Score=268.78 Aligned_cols=207 Identities=21% Similarity=0.190 Sum_probs=182.0
Q ss_pred chhhccCCcHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCC
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGAD---VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH 78 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~---~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~ 78 (237)
|+.|++.|+.+++++|++.|++ ++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. .++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~--~~~ 90 (282)
T 1oy3_D 13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR--VRA 90 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTT--TTC
T ss_pred HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH--cCC
Confidence 6889999999999999999988 78889999999999999999999999999999999999999999999994 499
Q ss_pred HHHHHHHHHcCCC-----------------------------------------------CccCCCCCCCHHHHHHhcCC
Q psy8421 79 LSVIKTLVHAGAD-----------------------------------------------VNHSTKTQSTPLRAACYDGR 111 (237)
Q Consensus 79 ~~~~~~ll~~~~~-----------------------------------------------~~~~~~~~~~~l~~a~~~~~ 111 (237)
.+++++|++.+.. ++..+..|.||||+|+..|+
T Consensus 91 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~ 170 (282)
T 1oy3_D 91 HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKD 170 (282)
T ss_dssp HHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTC
T ss_pred cchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCC
Confidence 9999999997754 56677889999999999999
Q ss_pred HHHHHHHHHcCCCCccccC-CCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcC
Q psy8421 112 LDIVKYLIEHGADLNITNH-YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG 190 (237)
Q Consensus 112 ~~~~~~L~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g 190 (237)
.+++++|+++|++++..+. .|.||||+|+.. ++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|
T Consensus 171 ~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~--~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 248 (282)
T 1oy3_D 171 AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA--QAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248 (282)
T ss_dssp HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHc--CCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcC
Confidence 9999999999999998875 499999999988 9999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCcHHHHHHHhCc
Q psy8421 191 ADLNITNHYNNSCLMIAAYKGI 212 (237)
Q Consensus 191 ~~~~~~~~~g~t~l~~a~~~~~ 212 (237)
++++.+|..|.||+++|.....
T Consensus 249 a~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 249 APEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp CCCCCCC---------------
T ss_pred CCcCcCCCcccccccccCCccc
Confidence 9999999999999999997663
No 7
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.6e-45 Score=271.85 Aligned_cols=207 Identities=24% Similarity=0.353 Sum_probs=170.0
Q ss_pred chhhccCCcHHHHHHHHHcCCC--------CCCCCCCCCcHHHHHHHcCCh-hHHHHHHHcCCCccccCcCCCcHHHHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGAD--------VNHSTKTQSTPLRAACYDGRL-DIVKYLIEHGADLNITNHYNNSCLMIAA 72 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~--------~~~~~~~~~t~l~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~~~~l~~a~ 72 (237)
|..|++.|++++|++|++.|.+ ++..+..+.|||+.|+..+.. .++++|++.|++++.+|..|.||||+|+
T Consensus 15 L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~ 94 (269)
T 4b93_B 15 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAA 94 (269)
T ss_dssp HHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 5678999999999999998875 345677889999999998876 4789999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHH
Q psy8421 73 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152 (237)
Q Consensus 73 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ 152 (237)
.. |+.+++++|++.+++++..+..|.||++.|+..++.+++++|++.|++++.++..|.||||+|+.. ++.+++++
T Consensus 95 ~~--g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~--g~~~~v~~ 170 (269)
T 4b93_B 95 LH--GRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG--GHHELVAL 170 (269)
T ss_dssp HT--TCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT--TCGGGHHH
T ss_pred Hc--CcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC--CCHHHHHH
Confidence 66 999999999999999999999999999999999999999999999999999999999999999988 99999999
Q ss_pred HHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCc
Q psy8421 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGI 212 (237)
Q Consensus 153 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~ 212 (237)
|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.++.
T Consensus 171 Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 171 LLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred HHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999999999999999987763
No 8
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.7e-43 Score=265.78 Aligned_cols=203 Identities=26% Similarity=0.385 Sum_probs=194.3
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.++
T Consensus 63 L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~--~~~~~ 140 (285)
T 3d9h_A 63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS--GSWDC 140 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH--TCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999977 99999
Q ss_pred HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421 82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 161 (237)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~ 161 (237)
+++|++.|.+++.. ..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+.. ++.+++++|+++|++++
T Consensus 141 v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~ 217 (285)
T 3d9h_A 141 VNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN--QQRACVKKLLESGADVN 217 (285)
T ss_dssp HHHHHHTTCCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHT--TCHHHHHHHHHTTCCTT
T ss_pred HHHHHHCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc--CcHHHHHHHHHCCCCCC
Confidence 99999999998754 4599999999999999999999999999999999999999999988 99999999999999998
Q ss_pred CCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHh
Q psy8421 162 HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 210 (237)
Q Consensus 162 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~ 210 (237)
. +..|.||||+|+..++.+++++|+++|++++.+|..|+||+|+|+..
T Consensus 218 ~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 218 Q-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPE 265 (285)
T ss_dssp C-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT
T ss_pred C-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcCc
Confidence 5 88999999999999999999999999999999999999999999944
No 9
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=5.8e-43 Score=256.56 Aligned_cols=206 Identities=23% Similarity=0.293 Sum_probs=194.2
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCChhHHHHHHHcC--CCccc-cCcCCCcHHHHHHHhCCC
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNH-STKTQSTPLRAACYDGRLDIVKYLIEHG--ADLNI-TNHYNNSCLMIAAYKGAG 77 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~-~~~~~~t~l~~A~~~g~~~~v~~Ll~~~--~~~~~-~~~~~~~~l~~a~~~~~~ 77 (237)
|+.|++.|+.+++++|++.+.++.. .+..|.||||+|+..|+.+++++|+++| .+++. .+..|.||||+|+.. |
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~--~ 83 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV--G 83 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH--C
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc--C
Confidence 5789999999999999999988654 8899999999999999999999999999 66666 788999999999977 9
Q ss_pred CHHHHHHHHHcC--CCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHh
Q psy8421 78 HLSVIKTLVHAG--ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH 155 (237)
Q Consensus 78 ~~~~~~~ll~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~ 155 (237)
+.+++++|++.| .+++..+..|.||+|.|+..++.+++++|+++|++++.++..|.||+|+|+.. ++.+++++|++
T Consensus 84 ~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~ 161 (228)
T 2dzn_A 84 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV--GSLKLIELLCG 161 (228)
T ss_dssp CHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT--TCHHHHHHHHT
T ss_pred CHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHc--CCHHHHHHHHh
Confidence 999999999998 88888999999999999999999999999999999999999999999999988 99999999999
Q ss_pred CC-CCCCCCCCCCCCHHHHHHHcCChhHHHHHH-HcCCCcccccCCCCcHHHHHHHhC
Q psy8421 156 AG-ADVNHSTKTQSTPLRAACYDGRLDIVKYLI-EHGADLNITNHYNNSCLMIAAYKG 211 (237)
Q Consensus 156 ~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~a~~~~ 211 (237)
+| .+++.++..|.||||+|+..|+.+++++|+ ++|++++.+|..|+||+++|+..+
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHH
Confidence 99 999999999999999999999999999999 889999999999999999997543
No 10
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.2e-42 Score=254.12 Aligned_cols=210 Identities=26% Similarity=0.297 Sum_probs=194.2
Q ss_pred CCcHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHH
Q psy8421 8 AGHLSVIKTLVHAGADVNHS-TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 86 (237)
Q Consensus 8 ~g~~~~~~~L~~~~~~~~~~-~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll 86 (237)
.|+++++++|++.|.+++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|+
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll 78 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA--DAQGVFQILI 78 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHH
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHH
Confidence 47889999999999998765 78999999999999999999999999999999999999999999966 9999999999
Q ss_pred HcCC-CCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCC
Q psy8421 87 HAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165 (237)
Q Consensus 87 ~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (237)
+.+. +++..+..+.||+|+|+..++.+++++|+++|++++..+..|.||||+|+.. ++.+++++|+++|++++.++.
T Consensus 79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~ 156 (223)
T 2f8y_A 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV--NNVDAAVVLLKNGANKDMQNN 156 (223)
T ss_dssp HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHT--TCHHHHHHHHHTTCCTTCCCT
T ss_pred HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCCCcCC
Confidence 9887 8888899999999999999999999999999999999999999999999988 999999999999999999999
Q ss_pred CCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCccccc
Q psy8421 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFD 223 (237)
Q Consensus 166 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ 223 (237)
.|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+..+.. ++...+++
T Consensus 157 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~--~i~~~L~~ 212 (223)
T 2f8y_A 157 REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH--DIVRLLDE 212 (223)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH--HHHHHHHH
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcch--HHHHHHHH
Confidence 999999999999999999999999999999999999999999999865 44444444
No 11
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-41 Score=256.97 Aligned_cols=205 Identities=27% Similarity=0.400 Sum_probs=102.0
Q ss_pred hhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHH
Q psy8421 3 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 82 (237)
Q Consensus 3 ~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ 82 (237)
+.|++.|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++
T Consensus 44 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~~ 121 (285)
T 1wdy_A 44 HNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY--GKVKAL 121 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT--TCHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh--CCHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444444444444432 444444
Q ss_pred HHHHHcCCCCccC----------CCCCCCHHHHHHhcCCHHHHHHHHHc-CCCCccccCCCCchhHHHHHcCCCC----H
Q psy8421 83 KTLVHAGADVNHS----------TKTQSTPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGAGH----L 147 (237)
Q Consensus 83 ~~ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~a~~~~~~~----~ 147 (237)
++|++.|.+++.. +..|.+|+|.|+..++.+++++|++. |.+++..+..|.||+|+|+.. ++ .
T Consensus 122 ~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~--~~~~~~~ 199 (285)
T 1wdy_A 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS--SDDSDVE 199 (285)
T ss_dssp HHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHC--SCTTTHH
T ss_pred HHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc--cccchHH
Confidence 4444444444433 33344455555555555555555544 444444455555555555544 33 4
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHH-cCCCcccccCCCCcHHHHHHHhC
Q psy8421 148 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKG 211 (237)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~ 211 (237)
+++++|+++|.+++.++..|.||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|+..|
T Consensus 200 ~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~ 264 (285)
T 1wdy_A 200 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264 (285)
T ss_dssp HHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcC
Confidence 55555555555555555555555555555555555555555 45555555555555555555554
No 12
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.8e-41 Score=254.46 Aligned_cols=216 Identities=29% Similarity=0.425 Sum_probs=203.2
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHS-TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~-~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 80 (237)
|+.|++.|+++++++|++.|.+++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. |+.+
T Consensus 9 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~ 86 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA--GSVK 86 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH--TCHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc--CCHH
Confidence 67899999999999999999999887 78899999999999999999999999999999999999999999977 9999
Q ss_pred HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccc----------cCCCCchhHHHHHcCCCCHHHH
Q psy8421 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT----------NHYNNSCLMIAAYKGAGHLSVI 150 (237)
Q Consensus 81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~----------~~~~~t~l~~a~~~~~~~~~~~ 150 (237)
++++|++.|.+++..+..|.||+|+|+..++.+++++|+++|.+++.. +..|.||+|+|+.. ++.+++
T Consensus 87 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v 164 (285)
T 1wdy_A 87 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK--GHVEVL 164 (285)
T ss_dssp HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH--TCHHHH
T ss_pred HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHc--CCHHHH
Confidence 999999999999999999999999999999999999999999998876 67899999999998 999999
Q ss_pred HHHHhC-CCCCCCCCCCCCCHHHHHHHcCC----hhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCccccc
Q psy8421 151 KTLVHA-GADVNHSTKTQSTPLRAACYDGR----LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFD 223 (237)
Q Consensus 151 ~~l~~~-~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ 223 (237)
++|++. |.+++..+..|.||||+|+..++ .+++++|+++|++++.+|..|.||+|+|+..|.. .+...+++
T Consensus 165 ~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~ 240 (285)
T 1wdy_A 165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL--GLVQRLLE 240 (285)
T ss_dssp HHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH--HHHHHHHH
T ss_pred HHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH--HHHHHHHh
Confidence 999987 99999999999999999999999 8999999999999999999999999999999854 45555554
No 13
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.8e-42 Score=269.66 Aligned_cols=215 Identities=18% Similarity=0.243 Sum_probs=199.8
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++. ..|.||||+|+.. |+.++
T Consensus 24 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~--g~~~~ 99 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMA--NKTDL 99 (364)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHT--TCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHc--CCHHH
Confidence 6789999999999999999999999999999999999999999999999999996554 4789999999966 99999
Q ss_pred HHHHHHc----CCCCcc-----------------CCCCCCCHHHHHHhcC--CHHHHHHHHHcCCCCccccCCCCchhHH
Q psy8421 82 IKTLVHA----GADVNH-----------------STKTQSTPLRAACYDG--RLDIVKYLIEHGADLNITNHYNNSCLMI 138 (237)
Q Consensus 82 ~~~ll~~----~~~~~~-----------------~~~~~~~~l~~a~~~~--~~~~~~~L~~~~~~~~~~~~~~~t~l~~ 138 (237)
+++|++. +.+++. .+..|.||||+|+..| +.+++++|+++|++++..+..|.||||+
T Consensus 100 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~ 179 (364)
T 3ljn_A 100 VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR 179 (364)
T ss_dssp HHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 9999998 777766 7888999999999999 9999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHhCCCC-----CCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421 139 AAYKGAGHLSVIKTLVHAGAD-----VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID 213 (237)
Q Consensus 139 a~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~ 213 (237)
|+.. ++.+++++|+++|.+ ++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|..
T Consensus 180 A~~~--g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~ 257 (364)
T 3ljn_A 180 AMEF--RNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMV 257 (364)
T ss_dssp HHHT--TCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCH
T ss_pred HHHc--CCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChH
Confidence 9988 999999999999988 999999999999999999999999999999999999999999999999999855
Q ss_pred ccccCcccccc
Q psy8421 214 VGRVGPGLFDR 224 (237)
Q Consensus 214 ~~~~~~~~~~~ 224 (237)
++...|++.
T Consensus 258 --~~v~~Ll~~ 266 (364)
T 3ljn_A 258 --LLTKELLQK 266 (364)
T ss_dssp --HHHHHHHHH
T ss_pred --HHHHHHHHc
Confidence 555555544
No 14
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.2e-41 Score=262.95 Aligned_cols=201 Identities=26% Similarity=0.377 Sum_probs=109.2
Q ss_pred hhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHH
Q psy8421 3 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 82 (237)
Q Consensus 3 ~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ 82 (237)
+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++
T Consensus 63 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v 140 (351)
T 3utm_A 63 HLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK--NRVEVC 140 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CCHHHH
Confidence 445555555555555555555555555555555555555555555555555555555555555555555533 555555
Q ss_pred HHHHHcCCCCccCC------------------------------------------------------CCCCCHHHHHHh
Q psy8421 83 KTLVHAGADVNHST------------------------------------------------------KTQSTPLRAACY 108 (237)
Q Consensus 83 ~~ll~~~~~~~~~~------------------------------------------------------~~~~~~l~~a~~ 108 (237)
++|+++|++++..+ ..+.||+|+|+.
T Consensus 141 ~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~ 220 (351)
T 3utm_A 141 SLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVA 220 (351)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHH
T ss_pred HHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHH
Confidence 55555555443322 223455555555
Q ss_pred c---CCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHH
Q psy8421 109 D---GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY 185 (237)
Q Consensus 109 ~---~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ 185 (237)
. +..+++++|++.|++++.++..|.||||+|+.. ++.+++++|+++|++++.+|..|.||||+|+..|+.+++++
T Consensus 221 ~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~ 298 (351)
T 3utm_A 221 SLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAER--AHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRL 298 (351)
T ss_dssp CCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 4 334555555555555555555555555555554 55555555555555555555555555555555555555555
Q ss_pred HHHcCCCcccccCCCCcHHHHH
Q psy8421 186 LIEHGADLNITNHYNNSCLMIA 207 (237)
Q Consensus 186 Ll~~g~~~~~~~~~g~t~l~~a 207 (237)
|+++|++++.+|..|+||+++|
T Consensus 299 Ll~~gad~~~~~~~g~tal~~a 320 (351)
T 3utm_A 299 LLSYGSDPSIISLQGFTAAQMG 320 (351)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHS
T ss_pred HHHcCCCCCCcCCCCCChhhhh
Confidence 5555555555555555555555
No 15
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.1e-41 Score=248.28 Aligned_cols=216 Identities=29% Similarity=0.363 Sum_probs=200.5
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccC-cCCCcHHHHHHHhCCCCHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIAAYKGAGHLS 80 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~ 80 (237)
|+.|++.|+++++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|.+++..+ ..|.||||+|+.. ++.+
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~--~~~~ 90 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ--GHLS 90 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH--TCHH
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc--CCHH
Confidence 678999999999999999999999999999999999999999999999999999888654 4599999999977 9999
Q ss_pred HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160 (237)
Q Consensus 81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~ 160 (237)
++++|++.|++++..+..|.+|+|.|+..++.+++++|+++|++++..+..|.||+|+|+..+ ...+++++|++.|.++
T Consensus 91 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~~L~~~~~~~ 169 (240)
T 3eu9_A 91 MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRT-HSVDPTRLLLTFNVSV 169 (240)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHC-CSSTTHHHHHHTTCCT
T ss_pred HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhC-ChHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999762 4588999999999999
Q ss_pred CCCCC-CCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCcccc
Q psy8421 161 NHSTK-TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLF 222 (237)
Q Consensus 161 ~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ 222 (237)
+..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|.. .+...++
T Consensus 170 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~--~~v~~L~ 230 (240)
T 3eu9_A 170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNV--WMINHLQ 230 (240)
T ss_dssp TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCH--HHHHHHH
T ss_pred chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcH--HHHHHHH
Confidence 99887 899999999999999999999999999999999999999999999855 4444444
No 16
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-41 Score=270.16 Aligned_cols=208 Identities=26% Similarity=0.374 Sum_probs=176.1
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
++.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+.. |+.++
T Consensus 183 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--g~~~~ 260 (437)
T 1n11_A 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE--GHAEM 260 (437)
T ss_dssp HHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHC--CCHHH
Confidence 4566677777777777777777777777777777777777777777777777777777777888888888855 88888
Q ss_pred HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421 82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 161 (237)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~ 161 (237)
+++|++.+++++..+..|.||+|+|+..++.+++++|+++|++++..+..|.||||+|+.. ++.+++++|+++|++++
T Consensus 261 v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~gad~n 338 (437)
T 1n11_A 261 VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY--GNIKLVKFLLQHQADVN 338 (437)
T ss_dssp HHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHS--SCSHHHHHHHHTTCCTT
T ss_pred HHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHc--CcHHHHHHHHhcCCCCC
Confidence 8888888888888888888888888888888888888888888888888899999999987 88999999999999999
Q ss_pred CCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421 162 HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID 213 (237)
Q Consensus 162 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~ 213 (237)
.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.
T Consensus 339 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~ 390 (437)
T 1n11_A 339 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 390 (437)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCH
T ss_pred CCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcH
Confidence 9999999999999999999999999999999999999999999999988853
No 17
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.3e-42 Score=270.81 Aligned_cols=219 Identities=23% Similarity=0.337 Sum_probs=201.5
Q ss_pred chhhccCCcHHHHHHHH--------HcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHH
Q psy8421 2 IAAYKGAGHLSVIKTLV--------HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY 73 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~--------~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~ 73 (237)
|+.|+..|+.+++++|+ +.|++++..|..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.
T Consensus 129 Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~ 208 (373)
T 2fo1_E 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA 208 (373)
T ss_dssp HHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHH
Confidence 57899999998888776 7899999999999999999999999999999999999999999999999999996
Q ss_pred hCCCCHHHHHHHHHcC---CCCccCCCCCCCHHHHHHhcC---CHHHHHHHHHcCCCCcc--------ccCCCCchhHHH
Q psy8421 74 KGAGHLSVIKTLVHAG---ADVNHSTKTQSTPLRAACYDG---RLDIVKYLIEHGADLNI--------TNHYNNSCLMIA 139 (237)
Q Consensus 74 ~~~~~~~~~~~ll~~~---~~~~~~~~~~~~~l~~a~~~~---~~~~~~~L~~~~~~~~~--------~~~~~~t~l~~a 139 (237)
. |+.+++++|++.+ .+++..+..|.||||+|+..+ +.+++++|+++|++++. .+..|.||||+|
T Consensus 209 ~--g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A 286 (373)
T 2fo1_E 209 N--RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286 (373)
T ss_dssp T--TCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHH
T ss_pred C--CCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHH
Confidence 6 9999999999987 788999999999999999998 89999999999999876 566899999999
Q ss_pred HHcCCCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccC
Q psy8421 140 AYKGAGHLSVIKTLVHAG-ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVG 218 (237)
Q Consensus 140 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 218 (237)
+.. ++.+++++|++++ .+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|+..|.. ++.
T Consensus 287 ~~~--g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~--~iv 362 (373)
T 2fo1_E 287 AQV--SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH--NIV 362 (373)
T ss_dssp HSS--CCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCH--HHH
T ss_pred HHh--CCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCH--HHH
Confidence 987 9999999999876 99999999999999999999999999999999999999999999999999999865 555
Q ss_pred cccccccc
Q psy8421 219 PGLFDRYP 226 (237)
Q Consensus 219 ~~~~~~~~ 226 (237)
..|++..+
T Consensus 363 ~~Ll~~~a 370 (373)
T 2fo1_E 363 DIFDRCRP 370 (373)
T ss_dssp HHHHTTC-
T ss_pred HHHHhcCc
Confidence 55555433
No 18
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-42 Score=263.08 Aligned_cols=205 Identities=28% Similarity=0.381 Sum_probs=191.7
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
++.|+..|+++++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. |+.++
T Consensus 44 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~--g~~~~ 121 (299)
T 1s70_B 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC--GYLDI 121 (299)
T ss_dssp HHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc--CCHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999977 99999
Q ss_pred HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHc-CCCCc--------------------------cccCCCCc
Q psy8421 82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH-GADLN--------------------------ITNHYNNS 134 (237)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~--------------------------~~~~~~~t 134 (237)
+++|+++|++++..+..|.||+|+|+..+..++++.++.. +.+++ ..+..|.|
T Consensus 122 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t 201 (299)
T 1s70_B 122 AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT 201 (299)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCC
T ss_pred HHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCC
Confidence 9999999999999999999999999999999998877754 44332 24567999
Q ss_pred hhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHh
Q psy8421 135 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 210 (237)
Q Consensus 135 ~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~ 210 (237)
|||+|+.. ++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||+++|+..
T Consensus 202 ~L~~A~~~--g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 202 ALHVAAAK--GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp HHHHHHHH--TCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred HHHHHHHC--CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence 99999998 999999999999999999999999999999999999999999999999999999999999999653
No 19
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=7.2e-41 Score=260.06 Aligned_cols=219 Identities=28% Similarity=0.352 Sum_probs=199.4
Q ss_pred chhhccCCcHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~-~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 80 (237)
|+.|++.|+.+.++.|+.. +.+++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. |+.+
T Consensus 28 L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--g~~~ 105 (351)
T 3utm_A 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY--GHYE 105 (351)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC--CCHH
Confidence 5778999999999999865 788999999999999999999999999999999999999999999999999966 9999
Q ss_pred HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCcccc-------------------------------
Q psy8421 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN------------------------------- 129 (237)
Q Consensus 81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~------------------------------- 129 (237)
++++|+++|++++..+..|.||+|+|+..++.+++++|+++|++++..+
T Consensus 106 iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 185 (351)
T 3utm_A 106 VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQA 185 (351)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHH
Confidence 9999999999999999999999999999999999999999998876544
Q ss_pred -----------------------CCCCchhHHHHHcCC-CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHH
Q psy8421 130 -----------------------HYNNSCLMIAAYKGA-GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY 185 (237)
Q Consensus 130 -----------------------~~~~t~l~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ 185 (237)
..|.||+|+|+.... +..+++++|+++|.+++.++..|.||||+|+..|+.+++++
T Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 265 (351)
T 3utm_A 186 AREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEV 265 (351)
T ss_dssp HHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 456788888887632 45899999999999999999999999999999999999999
Q ss_pred HHHcCCCcccccCCCCcHHHHHHHhCccccccCcccccc
Q psy8421 186 LIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDR 224 (237)
Q Consensus 186 Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~ 224 (237)
|+++|++++.+|..|+||||+|+..|.. ++...|++.
T Consensus 266 Ll~~ga~~n~~d~~g~t~L~~A~~~~~~--~~v~~Ll~~ 302 (351)
T 3utm_A 266 LHKHGAKMNALDSLGQTALHRAALAGHL--QTCRLLLSY 302 (351)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCH--HHHHHHHHT
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHHcCcH--HHHHHHHHc
Confidence 9999999999999999999999999854 455555544
No 20
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-40 Score=266.26 Aligned_cols=216 Identities=29% Similarity=0.393 Sum_probs=193.9
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
++.|++.|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+.. ++.++
T Consensus 150 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~ 227 (437)
T 1n11_A 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ--NQVEV 227 (437)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT--TCHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc--CCHHH
Confidence 5678888899999999998888888888889999999999999999999988888888888889999999965 89999
Q ss_pred HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421 82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 161 (237)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~ 161 (237)
+++|++.|.+++..+..|.||+|+|+..++.+++++|+++|.+++..+..|.||+|+|+.. ++.+++++|+++|.+++
T Consensus 228 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~ 305 (437)
T 1n11_A 228 ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE--GHVPVADVLIKHGVMVD 305 (437)
T ss_dssp HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH--TCHHHHHHHHHHTCCTT
T ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHhCCccCC
Confidence 9999999999988888999999999999999999999999999999999999999999988 99999999999999999
Q ss_pred CCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCccccc
Q psy8421 162 HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFD 223 (237)
Q Consensus 162 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ 223 (237)
.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|.. ++...|++
T Consensus 306 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~--~iv~~Ll~ 365 (437)
T 1n11_A 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT--DIVTLLLK 365 (437)
T ss_dssp CCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHH
T ss_pred CCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChH--HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998854 44444444
No 21
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.5e-40 Score=256.02 Aligned_cols=219 Identities=29% Similarity=0.411 Sum_probs=191.5
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCChhHHHHHHHcCCCc-----------------------
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTK-TQSTPLRAACYDGRLDIVKYLIEHGADL----------------------- 57 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~-~~~t~l~~A~~~g~~~~v~~Ll~~~~~~----------------------- 57 (237)
|+.|+++|++++|++|++.|++++..+. .|.||||+|+..|+.++|++|+++|+++
T Consensus 29 L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (337)
T 4g8k_A 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLL 108 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhh
Confidence 6789999999999999999999998875 5899999999999999999999988764
Q ss_pred ----------cccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccC----------CCCCCCHHHHHHhcCCHHHHHH
Q psy8421 58 ----------NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS----------TKTQSTPLRAACYDGRLDIVKY 117 (237)
Q Consensus 58 ----------~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~ 117 (237)
+..+..|.||+|+|+.. ++.++++++++.|++++.. +..|.||||+|+..|+.+++++
T Consensus 109 ~~~~~~~~~~~~~d~~g~t~l~~A~~~--~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~ 186 (337)
T 4g8k_A 109 KLFLSKGADVNECDFYGFTAFMEAAVY--GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 186 (337)
T ss_dssp HHHHTTTCCTTCBCTTCCBHHHHHHHT--TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHH
T ss_pred HHhhhccchhhhhccCCCCHHHHHHHc--CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHH
Confidence 34567789999999965 9999999999999887643 3458899999999999999999
Q ss_pred HHH-cCCCCccccCCCCchhHHHHHcCC--CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHc-CCCc
Q psy8421 118 LIE-HGADLNITNHYNNSCLMIAAYKGA--GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH-GADL 193 (237)
Q Consensus 118 L~~-~~~~~~~~~~~~~t~l~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~ 193 (237)
|++ .|++++..+..|.|+++.++.... +...++++|+++|++++.++..|.||||+|+..|+.+++++|++. |+++
T Consensus 187 LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v 266 (337)
T 4g8k_A 187 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 266 (337)
T ss_dssp HHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCT
T ss_pred HHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcc
Confidence 996 599999999999999998776521 224688999999999999999999999999999999999999985 8999
Q ss_pred ccccCCCCcHHHHHHHhCccccccCcccccc
Q psy8421 194 NITNHYNNSCLMIAAYKGIDVGRVGPGLFDR 224 (237)
Q Consensus 194 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~ 224 (237)
+.+|..|+||||+|+..|.. ++.+.|++.
T Consensus 267 n~~d~~G~TpL~~A~~~g~~--~iv~~Ll~~ 295 (337)
T 4g8k_A 267 NDTDSDGKTALLLAVELKLK--KIAELLCKR 295 (337)
T ss_dssp TCBCTTSCBHHHHHHHTTCH--HHHHHHHTT
T ss_pred cCcCCCCCCHHHHHHHcCCH--HHHHHHHHC
Confidence 99999999999999999864 555555544
No 22
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=245.64 Aligned_cols=214 Identities=29% Similarity=0.371 Sum_probs=178.9
Q ss_pred chhhccCCcHHHHHHHHHcC-----------CCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAG-----------ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~-----------~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~ 70 (237)
+|.|+..|+.+.+..++..+ ..++..+..|.||||+|+..|+.+++++|++.|.+++.++..|.||||+
T Consensus 19 lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 98 (285)
T 3d9h_A 19 SHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHE 98 (285)
T ss_dssp -----------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHH
T ss_pred HHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 68899999987777766543 2245678899999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHH
Q psy8421 71 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150 (237)
Q Consensus 71 a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ 150 (237)
|+.. |+.+++++|++.|++++..+..|.||+|+|+..++.+++++|+++|.+++..+ .|.||||+|+.. ++.+++
T Consensus 99 A~~~--g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~--g~~~~v 173 (285)
T 3d9h_A 99 ACLG--GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARR--GHVECV 173 (285)
T ss_dssp HHHT--TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHH--TCHHHH
T ss_pred HHHC--CcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHc--CCHHHH
Confidence 9966 99999999999999999999999999999999999999999999999987544 599999999998 999999
Q ss_pred HHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCccccc
Q psy8421 151 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFD 223 (237)
Q Consensus 151 ~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ 223 (237)
++|+++|.+++.++..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..+.. ++...+++
T Consensus 174 ~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~--~~v~~Ll~ 243 (285)
T 3d9h_A 174 NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASE--ELACLLMD 243 (285)
T ss_dssp HHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCH--HHHHHHHH
T ss_pred HHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCH--HHHHHHHH
Confidence 999999999999999999999999999999999999999999995 88999999999998855 44444444
No 23
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.6e-39 Score=245.44 Aligned_cols=194 Identities=23% Similarity=0.251 Sum_probs=178.2
Q ss_pred CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCC---ccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCC
Q psy8421 24 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD---LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS 100 (237)
Q Consensus 24 ~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 100 (237)
++..|..|.||||+|+..|+.+++++|+++|.+ ++.++..|.||||+|+.. |+.+++++|+++|++++..+..|.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~g~ 79 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL--GEASTVEKLYAAGAGVLVAERGGH 79 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCSSCCCTTSC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCC
Confidence 356789999999999999999999999999988 788899999999999977 999999999999999999999999
Q ss_pred CHHHHHHhcCCHHHHHHHHHcCCC-----------------------------------------------CccccCCCC
Q psy8421 101 TPLRAACYDGRLDIVKYLIEHGAD-----------------------------------------------LNITNHYNN 133 (237)
Q Consensus 101 ~~l~~a~~~~~~~~~~~L~~~~~~-----------------------------------------------~~~~~~~~~ 133 (237)
||||+|+..++.+++++|+++|.+ ++..+..|.
T Consensus 80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 159 (282)
T 1oy3_D 80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159 (282)
T ss_dssp CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence 999999999999999999998754 566778899
Q ss_pred chhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCC-CCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCc
Q psy8421 134 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKT-QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGI 212 (237)
Q Consensus 134 t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~ 212 (237)
||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+||+|+|+..|.
T Consensus 160 t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~ 237 (282)
T 1oy3_D 160 TPLHVAVIH--KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN 237 (282)
T ss_dssp CHHHHHHHT--TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred CHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCC
Confidence 999999988 9999999999999999998865 9999999999999999999999999999999999999999999885
Q ss_pred cccccCccccc
Q psy8421 213 DVGRVGPGLFD 223 (237)
Q Consensus 213 ~~~~~~~~~~~ 223 (237)
. ++...|++
T Consensus 238 ~--~~v~~Ll~ 246 (282)
T 1oy3_D 238 P--ILARLLRA 246 (282)
T ss_dssp H--HHHHHHHH
T ss_pred c--HHHHHHHH
Confidence 4 44444443
No 24
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.2e-38 Score=232.92 Aligned_cols=189 Identities=24% Similarity=0.264 Sum_probs=182.5
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCC-CccccCcCCCcHHHHHHHhCCCCHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLS 80 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~ 80 (237)
|+.|++.|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++++. +++..+..|.||||+|+.. ++.+
T Consensus 29 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~ 106 (223)
T 2f8y_A 29 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL--AVEG 106 (223)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHH--TCHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHh--CcHH
Confidence 678999999999999999999999999999999999999999999999999987 8888999999999999977 9999
Q ss_pred HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160 (237)
Q Consensus 81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~ 160 (237)
++++|++.|++++..+..|.||+|+|+..++.+++++|+++|++++..+..|.||+|+|+.. ++.+++++|+++|+++
T Consensus 107 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~ 184 (223)
T 2f8y_A 107 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE--GSYETAKVLLDHFANR 184 (223)
T ss_dssp HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH--TCHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHc--CCHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcc
Q psy8421 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 194 (237)
Q Consensus 161 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~ 194 (237)
+.++..|.||+++|+..++.+++++|+++|+...
T Consensus 185 ~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 185 DITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred ccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 9999999999999999999999999999998764
No 25
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.3e-38 Score=234.77 Aligned_cols=197 Identities=28% Similarity=0.397 Sum_probs=184.5
Q ss_pred CCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCC
Q psy8421 22 ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 101 (237)
Q Consensus 22 ~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 101 (237)
.+++..+..|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+.. |+.+++++|++.|.+++..+..|.|
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t 79 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN--NHLEAVKYLIKAGALVDPKDAEGST 79 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHTTTCCCCCCCTTSCC
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHh--CCHHHHHHHHhCCCCCCCCCCCCCc
Confidence 46778899999999999999999999999999999999999999999999966 9999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCh
Q psy8421 102 PLRAACYDGRLDIVKYLIEHG-ADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180 (237)
Q Consensus 102 ~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~ 180 (237)
|+|+|+..++.+++++|++.| .+++..+..|.||+|+|+.. ++.+++++|+++|.+++.++..|.||||+|+..|+.
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 157 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY--KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH
Confidence 999999999999999999998 88899999999999999988 999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCcccccc
Q psy8421 181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDR 224 (237)
Q Consensus 181 ~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~ 224 (237)
+++++|+++|++++.+|..|.||+|+|+..+.. ++...+++.
T Consensus 158 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~ 199 (237)
T 3b7b_A 158 DIAEILLAAKCDLHAVNIHGDSPLHIAARENRY--DCVVLFLSR 199 (237)
T ss_dssp HHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCH--HHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCH--hHHHHHHHc
Confidence 999999999999999999999999999998854 444444443
No 26
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=4.9e-39 Score=236.31 Aligned_cols=189 Identities=21% Similarity=0.311 Sum_probs=112.4
Q ss_pred chhhccCCcHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCc-----cccCcCCCcHHHHHHHhC
Q psy8421 2 IAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL-----NITNHYNNSCLMIAAYKG 75 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~-~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~~~~~l~~a~~~~ 75 (237)
|+.|++.|+.+++++|++. |.+++..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~- 85 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVIN- 85 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHT-
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHc-
Confidence 3455666666666666655 5666666666666666666666666666666665554 33445566666666643
Q ss_pred CCCHHHHHHHHHcCCCCccCCC-------------CCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHc
Q psy8421 76 AGHLSVIKTLVHAGADVNHSTK-------------TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 142 (237)
Q Consensus 76 ~~~~~~~~~ll~~~~~~~~~~~-------------~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~ 142 (237)
|+.+++++|++.|++++..+. .|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..
T Consensus 86 -~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~ 164 (232)
T 2rfa_A 86 -QNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ 164 (232)
T ss_dssp -TCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTC
T ss_pred -CCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence 566666666666665555433 456666666666666666666666666666666666666666655
Q ss_pred CCCCHHHH----HHHHhCCCCC------CCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcc
Q psy8421 143 GAGHLSVI----KTLVHAGADV------NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 194 (237)
Q Consensus 143 ~~~~~~~~----~~l~~~~~~~------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~ 194 (237)
++.+++ ++|+++|.+. +.++..|.||||+|+..|+.+++++|+++|..+.
T Consensus 165 --~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 165 --PNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224 (232)
T ss_dssp --SCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred --CChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccch
Confidence 555554 5666666554 3555566666666666666666666666554443
No 27
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.7e-38 Score=221.48 Aligned_cols=159 Identities=40% Similarity=0.501 Sum_probs=139.9
Q ss_pred cHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCH
Q psy8421 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 112 (237)
Q Consensus 33 t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~ 112 (237)
++|+.||+.|+.++|++|+++|++++.+|..|.||||+|+.. ++.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~--~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAEN--GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCH
Confidence 468889999999999999999999999999999999999965 899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCC
Q psy8421 113 DIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD 192 (237)
Q Consensus 113 ~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~ 192 (237)
+++++|+++|++++.++..|.||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~--g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 84 EVVKLLISKGADVNAKDSDGRTPLHHAAEN--GHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred HHHHHHHHCcCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 999999999999999999999999999988 899999999999999999999999999999999999999999999998
Q ss_pred ccc
Q psy8421 193 LNI 195 (237)
Q Consensus 193 ~~~ 195 (237)
++-
T Consensus 162 ie~ 164 (169)
T 4gpm_A 162 LEH 164 (169)
T ss_dssp ---
T ss_pred cCC
Confidence 764
No 28
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=8.3e-39 Score=234.90 Aligned_cols=188 Identities=27% Similarity=0.314 Sum_probs=181.4
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|.+++.++..|.||||+|+.. ++.++
T Consensus 44 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~ 121 (231)
T 3aji_A 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK--NRHEI 121 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHH
T ss_pred HHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999966 99999
Q ss_pred HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421 82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 161 (237)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~ 161 (237)
+++|++.|.+++..+..|.||+|+|+..++.+++++|+++|++++.++..|.||+|+|+.. ++.+++++|+++|++++
T Consensus 122 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE--ERVEEAKFLVTQGASIY 199 (231)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHC--CCHHHHHHHHHCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999988 99999999999999999
Q ss_pred CCCCCCCCHHHHHHHcCChhHHHHHHHcCCCc
Q psy8421 162 HSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 193 (237)
Q Consensus 162 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~ 193 (237)
.++..|.||+++|+..++.+++++|.++|+++
T Consensus 200 ~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i 231 (231)
T 3aji_A 200 IENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231 (231)
T ss_dssp CCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence 99999999999999999999999999987653
No 29
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.1e-39 Score=240.78 Aligned_cols=203 Identities=27% Similarity=0.360 Sum_probs=187.6
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+.. |+.++
T Consensus 40 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~--~~~~~ 116 (261)
T 2xai_A 40 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARR--GHVEC 116 (261)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHT--TCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHc--CcHHH
Confidence 5789999999999999999999999999999999999999999999999999999885 44599999999966 99999
Q ss_pred HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421 82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 161 (237)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~ 161 (237)
+++|++.|++++..+..|.||+|+|+..++.+++++|+++|++++. +..|.||+|+|+.. ++.+++++|+++|++++
T Consensus 117 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~--~~~~~v~~Ll~~gad~~ 193 (261)
T 2xai_A 117 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVART--ASEELACLLMDFGADTQ 193 (261)
T ss_dssp HHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHH--TCHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHc--CCHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999999999985 78899999999998 99999999999999999
Q ss_pred CCCCCCCCHHHHHHHcCChhHHHHHHHcCCC--------cccccCCCCcHHHHHHHhCc
Q psy8421 162 HSTKTQSTPLRAACYDGRLDIVKYLIEHGAD--------LNITNHYNNSCLMIAAYKGI 212 (237)
Q Consensus 162 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~--------~~~~~~~g~t~l~~a~~~~~ 212 (237)
.+|..|+||+|+|+.. .+++++|++++.. +++++..|.||+|.+.+...
T Consensus 194 ~~d~~g~tpl~~A~~~--~~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~ 250 (261)
T 2xai_A 194 AKNAEGKRPVELVPPE--SPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVL 250 (261)
T ss_dssp CCCTTSCCGGGGSCTT--CTHHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSS
T ss_pred CcCCCCCChhhhcccc--ccHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCC
Confidence 9999999999999954 4689999998764 56889999999999887653
No 30
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.8e-38 Score=233.31 Aligned_cols=190 Identities=18% Similarity=0.263 Sum_probs=174.9
Q ss_pred CCCcHHHHHHHcCChhHHHHHHHc-CCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCC-----ccCCCCCCCHH
Q psy8421 30 TQSTPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV-----NHSTKTQSTPL 103 (237)
Q Consensus 30 ~~~t~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~-----~~~~~~~~~~l 103 (237)
.|.||||+|+..|+.+++++|++. |.+++.++..|.||||+|+.. |+.+++++|++.|+++ +..+..|.|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L 79 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY--DNLEAAMVLMEAAPELVFEPMTSELYEGQTAL 79 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHc--CCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence 488999999999999999999987 999999999999999999966 9999999999999876 56677899999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCccccC-------------CCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCH
Q psy8421 104 RAACYDGRLDIVKYLIEHGADLNITNH-------------YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTP 170 (237)
Q Consensus 104 ~~a~~~~~~~~~~~L~~~~~~~~~~~~-------------~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~ 170 (237)
|+|+..++.+++++|+++|++++..+. .|.||||+|+.. ++.+++++|+++|++++.+|..|.||
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~t~ 157 (232)
T 2rfa_A 80 HIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV--GSEEIVRLLIEHGADIRAQDSLGNTV 157 (232)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 999999999999999999999988765 799999999998 99999999999999999999999999
Q ss_pred HHHHHHcCChhHH----HHHHHcCCCc------ccccCCCCcHHHHHHHhCccccccCccccccc
Q psy8421 171 LRAACYDGRLDIV----KYLIEHGADL------NITNHYNNSCLMIAAYKGIDVGRVGPGLFDRY 225 (237)
Q Consensus 171 l~~a~~~~~~~~~----~~Ll~~g~~~------~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~ 225 (237)
||+|+..++.+++ ++|+++|+++ +.+|..|+||+|+|+..|.. ++...|+++.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~--~~v~~Ll~~g 220 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI--VMFQHLMQKR 220 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCH--HHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCH--HHHHHHHhcC
Confidence 9999999999988 9999999998 68999999999999999965 5556666553
No 31
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=4.3e-39 Score=243.46 Aligned_cols=207 Identities=16% Similarity=0.128 Sum_probs=176.7
Q ss_pred cCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHH
Q psy8421 7 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 86 (237)
Q Consensus 7 ~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll 86 (237)
..+..++.++|.+. +++..|..|.||||+|+..|+.+++++|+++|++++..+ |.||||+|+ ..|+.+++++|+
T Consensus 9 ~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~--~~g~~~~v~~Ll 82 (285)
T 3kea_A 9 TWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAA--TLEDTKIVKILL 82 (285)
T ss_dssp GCCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHT--TSSSCHHHHHHH
T ss_pred hcCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHH--HcCCHHHHHHHH
Confidence 33444555555443 578889999999999999999999999999999988774 899999999 449999999999
Q ss_pred HcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCC-CchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCC
Q psy8421 87 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN-NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165 (237)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (237)
+.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..| .||+|+|+.. ++.+++++|+++|.+.... .
T Consensus 83 ~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~-~ 159 (285)
T 3kea_A 83 FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML--NDVSIVSYFLSEIPSTFDL-A 159 (285)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHT--TCHHHHHHHHTTSCTTCCC-S
T ss_pred HCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc--CCHHHHHHHHhCCCccccc-c
Confidence 9999999999999999999999999999999999999999999888 7999999988 9999999999998776322 2
Q ss_pred CCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcH-HHHHHHhCccccccCcccccc
Q psy8421 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC-LMIAAYKGIDVGRVGPGLFDR 224 (237)
Q Consensus 166 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-l~~a~~~~~~~~~~~~~~~~~ 224 (237)
.|.||||+|+..|+.+++++|+++|++++.+|..|+|| +|+|+..|.. ++...+++.
T Consensus 160 ~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~--~~v~~Ll~~ 217 (285)
T 3kea_A 160 ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI--EMLQALFKY 217 (285)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH--HHHHHHTTS
T ss_pred CCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH--HHHHHHHHc
Confidence 78899999999999999999999999999999999997 9999998854 444444443
No 32
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=4.9e-40 Score=242.29 Aligned_cols=206 Identities=19% Similarity=0.218 Sum_probs=184.3
Q ss_pred CchhhccCCcHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCC
Q psy8421 1 MIAAYKGAGHLSVIKTLVHAGA----DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA 76 (237)
Q Consensus 1 ~l~~a~~~g~~~~~~~L~~~~~----~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~ 76 (237)
.|+.|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus 11 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-- 88 (236)
T 1ikn_D 11 FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ-- 88 (236)
T ss_dssp TTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH--
T ss_pred hhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--
Confidence 3688999999999999998765 6888899999999999999999999999999999999999999999999977
Q ss_pred CCHHHHHHHHHcCCC------CccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccC-CCCchhHHHHHcCCCCHHH
Q psy8421 77 GHLSVIKTLVHAGAD------VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH-YNNSCLMIAAYKGAGHLSV 149 (237)
Q Consensus 77 ~~~~~~~~ll~~~~~------~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~ 149 (237)
|+.+++++|++.+.+ ++..+..|.||||+|+..++.+++++|+++|++++..+. .|.||||+|+.. ++.++
T Consensus 89 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~--~~~~~ 166 (236)
T 1ikn_D 89 GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL--QNPDL 166 (236)
T ss_dssp TCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT--TCHHH
T ss_pred CCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc--CCHHH
Confidence 999999999998865 466778899999999999999999999999999999887 899999999988 99999
Q ss_pred HHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcc--cccCCCCcHHHHHHHh
Q psy8421 150 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN--ITNHYNNSCLMIAAYK 210 (237)
Q Consensus 150 ~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~l~~a~~~ 210 (237)
+++|+++|++++.++..|.||||+|+..++.+++++|+++|+++. ..+..|.||.+.+...
T Consensus 167 v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 167 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp HHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred HHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence 999999999999999999999999999999999999999999876 8888899988766543
No 33
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=4.5e-38 Score=226.25 Aligned_cols=179 Identities=28% Similarity=0.401 Sum_probs=104.2
Q ss_pred CCCcHHHHHHHcCChhHHHHHHHcCC-CccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHh
Q psy8421 30 TQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY 108 (237)
Q Consensus 30 ~~~t~l~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~ 108 (237)
.+.|||+.|+..|+.+.++.|++.+. +++..+..|.||||+|+.. |+.+++++|++.|++++..+..|.||+|+|+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN--NDIEIAKALIDRGADINLQNSISDSPYLYAGA 81 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 34556666666666666665554443 5555555556666666644 55666666666665555555555666666666
Q ss_pred cCCHHHHHHHH-HcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCC-----hh
Q psy8421 109 DGRLDIVKYLI-EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG-ADVNHSTKTQSTPLRAACYDGR-----LD 181 (237)
Q Consensus 109 ~~~~~~~~~L~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~t~l~~a~~~~~-----~~ 181 (237)
.++.+++++|+ ..+.+++..+..|.||+|+|+.. ++.+++++|+++| .+++.++..|.||||+|+..++ .+
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK--GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHT--TCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence 66666666555 33445555555556666666655 5556666666555 5555555556666666665555 55
Q ss_pred HHHHHHHcCCCcccccCCCCcHHHHHHHhCc
Q psy8421 182 IVKYLIEHGADLNITNHYNNSCLMIAAYKGI 212 (237)
Q Consensus 182 ~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~ 212 (237)
++++|+++|++++.+|..|.||+|+|+..|.
T Consensus 160 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 190 (201)
T 3hra_A 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGY 190 (201)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Confidence 6666666666666666666666666665553
No 34
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=9.8e-38 Score=230.52 Aligned_cols=193 Identities=26% Similarity=0.359 Sum_probs=177.1
Q ss_pred CCCCCCCCcHHHHHHHcCChhHHHHHHH----cCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCC
Q psy8421 25 NHSTKTQSTPLRAACYDGRLDIVKYLIE----HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS 100 (237)
Q Consensus 25 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 100 (237)
+..|..|.||||+|+..|+.+++++|++ .|.+++..+..|.||||+|+.. |+.+++++|++.|++++..+..|.
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~ 80 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT--TLPSVVRLLVTAGASPMALDRHGQ 80 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHc--CCHHHHHHHHHcCCCccccCCCCC
Confidence 4578899999999999999999999997 7899999999999999999966 999999999999999999999999
Q ss_pred CHHHHHHhcCCHHHHHHHHHcCC----CCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHH
Q psy8421 101 TPLRAACYDGRLDIVKYLIEHGA----DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAAC 175 (237)
Q Consensus 101 ~~l~~a~~~~~~~~~~~L~~~~~----~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~ 175 (237)
||+|+|+..++.+++++|++.+. +++..+..|.||+|+|+.. ++.+++++|+++|.+++..+ ..|.||||+|+
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~ 158 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT--ECQETVQLLLERGADIDAVDIKSGRSPLIHAV 158 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHc--CCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Confidence 99999999999999999999987 7888899999999999998 99999999999999999988 78999999999
Q ss_pred HcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCccccc
Q psy8421 176 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFD 223 (237)
Q Consensus 176 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ 223 (237)
..|+.+++++|+++|++++.+|..|.||+|+|+..|.. ++...+++
T Consensus 159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~ 204 (241)
T 1k1a_A 159 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLL--PLVRTLVR 204 (241)
T ss_dssp HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCH--HHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH--HHHHHHHh
Confidence 99999999999999999999999999999999998864 44444444
No 35
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=4.9e-38 Score=233.89 Aligned_cols=185 Identities=24% Similarity=0.269 Sum_probs=177.7
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCC-CccccCcCCCcHHHHHHHhCCCCHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLS 80 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~ 80 (237)
|+.|++.|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++++. +++..+..|.||||+|+.. ++.+
T Consensus 61 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~ 138 (253)
T 1yyh_A 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL--AVEG 138 (253)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHH--TCSS
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHc--ChHH
Confidence 678999999999999999999999999999999999999999999999999987 8999999999999999977 8999
Q ss_pred HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160 (237)
Q Consensus 81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~ 160 (237)
++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++..+..|.||+|+|+.. ++.+++++|+++|+++
T Consensus 139 ~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~--~~~~~v~~Ll~~ga~~ 216 (253)
T 1yyh_A 139 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE--GSYETAKVLLDHFANR 216 (253)
T ss_dssp HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHC--CCHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CCCCCCCCCHHHHHHHcCChhHHHHHHHcC
Q psy8421 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHG 190 (237)
Q Consensus 161 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g 190 (237)
+.++..|.||+++|+..|+.+++++|....
T Consensus 217 ~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 217 DITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 999999999999999999999999998654
No 36
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-39 Score=251.28 Aligned_cols=197 Identities=19% Similarity=0.169 Sum_probs=167.2
Q ss_pred hhhccCCcHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCC---
Q psy8421 3 AAYKGAGHLSVIKTLVHAGADVNH-STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH--- 78 (237)
Q Consensus 3 ~~a~~~g~~~~~~~L~~~~~~~~~-~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~--- 78 (237)
+.++..+..++++.|++.|++++. .+..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+.. |+
T Consensus 102 ~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~--g~~~~ 179 (327)
T 1sw6_A 102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS--VNNYD 179 (327)
T ss_dssp --CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS--SHHHH
T ss_pred HHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh--ccccc
Confidence 345556678899999999999999 899999999999999999999999999999999999999999999965 66
Q ss_pred HHHHHHHHHcC-CCCccCCCCCCCHHHHHHh----cCCHHHHHHHHHc--------------------CCCCccccCCCC
Q psy8421 79 LSVIKTLVHAG-ADVNHSTKTQSTPLRAACY----DGRLDIVKYLIEH--------------------GADLNITNHYNN 133 (237)
Q Consensus 79 ~~~~~~ll~~~-~~~~~~~~~~~~~l~~a~~----~~~~~~~~~L~~~--------------------~~~~~~~~~~~~ 133 (237)
.++++.|++.+ .+++..+..|.||||+|+. .++.+++++|++. |++++..+..|.
T Consensus 180 ~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~ 259 (327)
T 1sw6_A 180 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK 259 (327)
T ss_dssp TTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------
T ss_pred HHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCC
Confidence 67778888766 6789999999999999999 8999999999987 888999999999
Q ss_pred chhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhC
Q psy8421 134 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211 (237)
Q Consensus 134 t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~ 211 (237)
||+|.++. +++|+++ +++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 260 t~L~~a~~--------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 260 DSILENLD--------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp CHHHHHCS--------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred ChhHHHHH--------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 99999983 7888887 58889999999999999999999999999999999999999999999998765
No 37
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=2.2e-37 Score=222.67 Aligned_cols=185 Identities=25% Similarity=0.395 Sum_probs=175.9
Q ss_pred chhhccCCcHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~-~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 80 (237)
|+.|+..|+.+.++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~--~~~~ 86 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ--GRTE 86 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHH
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHH
Confidence 577899999999999998886 8999999999999999999999999999999999999999999999999966 9999
Q ss_pred HHHHHH-HcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcC-CCCccccCCCCchhHHHHHcCCCC-----HHHHHHH
Q psy8421 81 VIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG-ADLNITNHYNNSCLMIAAYKGAGH-----LSVIKTL 153 (237)
Q Consensus 81 ~~~~ll-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~l~~a~~~~~~~-----~~~~~~l 153 (237)
++++|+ ..+.+++..+..|.||+|+|+..++.+++++|+++| .+++..+..|.||+|+|+.. ++ .+++++|
T Consensus 87 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~~~v~~L 164 (201)
T 3hra_A 87 ILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL--REGNQLYQDIVKLL 164 (201)
T ss_dssp HHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHS--SCCSHHHHHHHHHH
T ss_pred HHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHh--ccchhhHHHHHHHH
Confidence 999999 567789999999999999999999999999999998 89999999999999999988 65 8999999
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcC
Q psy8421 154 VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG 190 (237)
Q Consensus 154 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g 190 (237)
+++|++++.++..|.||||+|+..|+.+++++|+++|
T Consensus 165 l~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 165 MENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 9999999999999999999999999999999999876
No 38
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=7.9e-39 Score=242.04 Aligned_cols=190 Identities=21% Similarity=0.220 Sum_probs=178.8
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
|+.|+..|+.+++++|++.|++++.. +|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. |+.++
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~--g~~~~ 110 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS--GNMQT 110 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHc--CCHHH
Confidence 67899999999999999999999877 489999999999999999999999999999999999999999966 99999
Q ss_pred HHHHHHcCCCCccCCCCC-CCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421 82 IKTLVHAGADVNHSTKTQ-STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160 (237)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~ 160 (237)
+++|++.|++++..+..| .||+|+|+..++.+++++|+++|.+.... ..|.||||+|+.. ++.+++++|+++|+++
T Consensus 111 v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~--g~~~~v~~Ll~~gad~ 187 (285)
T 3kea_A 111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKN--GHVDMMILLLDYMTST 187 (285)
T ss_dssp HHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHc--ChHHHHHHHHHcCCCC
Confidence 999999999999999999 89999999999999999999999776322 2789999999988 9999999999999999
Q ss_pred CCCCCCCCCH-HHHHHHcCChhHHHHHHHcCCCcccccC
Q psy8421 161 NHSTKTQSTP-LRAACYDGRLDIVKYLIEHGADLNITNH 198 (237)
Q Consensus 161 ~~~~~~~~t~-l~~a~~~~~~~~~~~Ll~~g~~~~~~~~ 198 (237)
+.++..|.|| ||+|+..++.+++++|+++|++++..|.
T Consensus 188 n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~ 226 (285)
T 3kea_A 188 NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL 226 (285)
T ss_dssp CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG
T ss_pred CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh
Confidence 9999999998 9999999999999999999999999874
No 39
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=239.02 Aligned_cols=187 Identities=28% Similarity=0.435 Sum_probs=154.7
Q ss_pred hhhccCCcH-HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 3 AAYKGAGHL-SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 3 ~~a~~~g~~-~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
+.|+..++. ++++.|++.|++++..|..|.||||+|+..|+.+++++|++.|++++..+..|.||+++|+.. ++.++
T Consensus 57 ~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~--~~~~~ 134 (269)
T 4b93_B 57 CQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQ--GHFQV 134 (269)
T ss_dssp ------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHH--TCHHH
T ss_pred HHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcccccccc--ChHHH
Confidence 445555554 588999999999999999999999999999999999999999999999999999999999976 99999
Q ss_pred HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421 82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 161 (237)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~ 161 (237)
+++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|+++|++++
T Consensus 135 ~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~Gad~~ 212 (269)
T 4b93_B 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIE--KHVFVVELLLLHGASVQ 212 (269)
T ss_dssp HHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHT--TCHHHHHHHHHTTCCSC
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHc--CCHHHHHHHHHCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999988 99999999999999999
Q ss_pred CCCCCCCCHHHHHHHcCC-hhHHHHHHHcCCCc
Q psy8421 162 HSTKTQSTPLRAACYDGR-LDIVKYLIEHGADL 193 (237)
Q Consensus 162 ~~~~~~~t~l~~a~~~~~-~~~~~~Ll~~g~~~ 193 (237)
.+|..|+||||+|+.+++ .++++.+...+..+
T Consensus 213 ~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~ 245 (269)
T 4b93_B 213 VLNKRQRTAVDCAEQNSKIMELLQVVPSCVASL 245 (269)
T ss_dssp CCCTTSCCSGGGSCTTCHHHHHTTC--------
T ss_pred CcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhh
Confidence 999999999999988765 34444444445444
No 40
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.1e-37 Score=217.45 Aligned_cols=157 Identities=36% Similarity=0.502 Sum_probs=147.1
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
|..||+.|+.++|+.|++.|++++..|..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+.. |+.++
T Consensus 8 L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~--g~~~~ 85 (169)
T 4gpm_A 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN--GHKEV 85 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc--CCHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999966 99999
Q ss_pred HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCC
Q psy8421 82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 161 (237)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~ 161 (237)
+++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+.. ++.+++++|+++|++++
T Consensus 86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~--g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREH--GNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHTC-----
T ss_pred HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999988 99999999999999986
Q ss_pred C
Q psy8421 162 H 162 (237)
Q Consensus 162 ~ 162 (237)
.
T Consensus 164 ~ 164 (169)
T 4gpm_A 164 H 164 (169)
T ss_dssp -
T ss_pred C
Confidence 5
No 41
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.2e-38 Score=249.11 Aligned_cols=204 Identities=22% Similarity=0.203 Sum_probs=187.8
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHc----CCCccc-----------------c
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH----GADLNI-----------------T 60 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~----~~~~~~-----------------~ 60 (237)
|+.|+..|+.+++++|++.|++.+ +..|.||||+|+..|+.+++++|+++ |.+++. .
T Consensus 57 L~~A~~~g~~~~v~~Ll~~g~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (364)
T 3ljn_A 57 LHLACKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVK 134 (364)
T ss_dssp HHHHHHHCCHHHHHHHHHHCCCCC--CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEE
T ss_pred HHHHHHcCCHHHHHHHHHCCCCcc--ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccC
Confidence 578999999999999999999654 35789999999999999999999998 888777 8
Q ss_pred CcCCCcHHHHHHHhCCC--CHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCC-----CccccCCCC
Q psy8421 61 NHYNNSCLMIAAYKGAG--HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD-----LNITNHYNN 133 (237)
Q Consensus 61 ~~~~~~~l~~a~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~-----~~~~~~~~~ 133 (237)
+..|.||||+|+.. | +.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.
T Consensus 135 ~~~g~t~L~~A~~~--g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~ 212 (364)
T 3ljn_A 135 HCKGQTALHWCVGL--GPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN 212 (364)
T ss_dssp EESCCCHHHHHHHS--CGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred CCCCCCHHHHHHHc--CCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence 88999999999966 8 99999999999999999999999999999999999999999999988 999999999
Q ss_pred chhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCccc------------ccCCCC
Q psy8421 134 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI------------TNHYNN 201 (237)
Q Consensus 134 t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~------------~~~~g~ 201 (237)
||||+|+.. ++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++. .+..++
T Consensus 213 t~L~~A~~~--g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (364)
T 3ljn_A 213 SHLHWAILI--NWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVW 290 (364)
T ss_dssp CTTHHHHTT--TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCC
T ss_pred cHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCccccccccccc
Confidence 999999987 999999999999999999999999999999999999999999999887644 556788
Q ss_pred cHHHHHHHhC
Q psy8421 202 SCLMIAAYKG 211 (237)
Q Consensus 202 t~l~~a~~~~ 211 (237)
||++.|+..|
T Consensus 291 ~~l~~aa~~~ 300 (364)
T 3ljn_A 291 LDFVPAAADP 300 (364)
T ss_dssp CTTSCSSCCH
T ss_pred ccchhhhhcc
Confidence 8887776655
No 42
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=7.6e-37 Score=236.53 Aligned_cols=212 Identities=25% Similarity=0.329 Sum_probs=186.9
Q ss_pred chhhccCCcHHHHHHHHHcCCCCC---------------------------------CCCCCCCcHHHHHHHcCChhHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVN---------------------------------HSTKTQSTPLRAACYDGRLDIVK 48 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~---------------------------------~~~~~~~t~l~~A~~~g~~~~v~ 48 (237)
|+.|++.|+.+++++|+++|++++ ..+..|.||+|+|+..|+.++++
T Consensus 63 Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~ 142 (337)
T 4g8k_A 63 LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 142 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHH
Confidence 578999999999999999987654 45667899999999999999999
Q ss_pred HHHHcCCCcccc----------CcCCCcHHHHHHHhCCCCHHHHHHHHH-cCCCCccCCCCCCCHHHHHHhcCC----HH
Q psy8421 49 YLIEHGADLNIT----------NHYNNSCLMIAAYKGAGHLSVIKTLVH-AGADVNHSTKTQSTPLRAACYDGR----LD 113 (237)
Q Consensus 49 ~Ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~l~~a~~~~~----~~ 113 (237)
+++++|++++.. +..|.||||+|+.. |+.+++++|++ .|++++..+..|.++++.++..+. ..
T Consensus 143 ~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~--g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~ 220 (337)
T 4g8k_A 143 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK--GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 220 (337)
T ss_dssp HHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH--TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHH
T ss_pred HHHHcCCCcchhhccccccccccCCCCcHHHHHHHC--CCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHH
Confidence 999999987653 44689999999977 99999999996 699999999999999998776543 45
Q ss_pred HHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCC
Q psy8421 114 IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD 192 (237)
Q Consensus 114 ~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~ 192 (237)
++++|+++|++++.++..|.||||+|+.. ++.++++.|++. |++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 221 i~~lLl~~gad~n~~d~~g~t~L~~a~~~--~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd 298 (337)
T 4g8k_A 221 ITHLLLDHGADVNVRGERGKTPLILAVEK--KHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 298 (337)
T ss_dssp HHHHHHHTTCCTTCCCGGGCCHHHHHHHT--TCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHHHHh--hhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 88999999999999999999999999988 999999999985 799999999999999999999999999999999999
Q ss_pred cccccCCCCcHHHHHHHhCccccccCcccccc
Q psy8421 193 LNITNHYNNSCLMIAAYKGIDVGRVGPGLFDR 224 (237)
Q Consensus 193 ~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~ 224 (237)
++. .||+|+|+..|.. ++...|++.
T Consensus 299 ~n~-----~~~L~~A~~~~~~--~iv~~Ll~~ 323 (337)
T 4g8k_A 299 TDC-----GDLVMTARRNYDH--SLVKVLLSH 323 (337)
T ss_dssp STT-----CCHHHHHHHTTCH--HHHHHHHHT
T ss_pred CCC-----CCHHHHHHHcCCH--HHHHHHHHC
Confidence 875 4699999998854 455555543
No 43
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=8.2e-37 Score=223.79 Aligned_cols=186 Identities=23% Similarity=0.309 Sum_probs=171.0
Q ss_pred CCcHHHHHHHcCChhHHHHHHHcCCCccc-cCcCCCcHHHHHHHhCCCCHHHHHHHHHcC--CCCcc-CCCCCCCHHHHH
Q psy8421 31 QSTPLRAACYDGRLDIVKYLIEHGADLNI-TNHYNNSCLMIAAYKGAGHLSVIKTLVHAG--ADVNH-STKTQSTPLRAA 106 (237)
Q Consensus 31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~--~~~~~-~~~~~~~~l~~a 106 (237)
|.||||+|+..|+.+++++|++.+.+... .+..|.||||+|+.. |+.+++++|++.| .+++. .+..|.||+|+|
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF--QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHc--CCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence 78999999999999999999999887665 889999999999966 9999999999999 55555 778999999999
Q ss_pred HhcCCHHHHHHHHHcC--CCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHH
Q psy8421 107 CYDGRLDIVKYLIEHG--ADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 184 (237)
Q Consensus 107 ~~~~~~~~~~~L~~~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~ 184 (237)
+..++.+++++|+++| .+++..+..|.||+|+|+.. ++.+++++|+++|.+++.++..|.||||+|+..|+.++++
T Consensus 80 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 157 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK--KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157 (228)
T ss_dssp HHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHc--CCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999999999998 88888999999999999988 9999999999999999999999999999999999999999
Q ss_pred HHHHcC-CCcccccCCCCcHHHHHHHhCccccccCcccc
Q psy8421 185 YLIEHG-ADLNITNHYNNSCLMIAAYKGIDVGRVGPGLF 222 (237)
Q Consensus 185 ~Ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ 222 (237)
+|++.| ++++.+|..|+||+|+|+..|.. ++...++
T Consensus 158 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~--~~v~~Ll 194 (228)
T 2dzn_A 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHG--DAAVLLV 194 (228)
T ss_dssp HHHTTTCCCSCCCCTTSCCHHHHHHHTTCH--HHHHHHH
T ss_pred HHHhcCcccccCcCCCCCCHHHHHHHcCCH--HHHHHHH
Confidence 999999 99999999999999999998854 4444444
No 44
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.6e-38 Score=236.91 Aligned_cols=192 Identities=23% Similarity=0.279 Sum_probs=173.7
Q ss_pred chhhccCCcHH----HHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CChhHHHHHHHcCCCcccc----------
Q psy8421 2 IAAYKGAGHLS----VIKTLVHAGADVNH----STKTQSTPLRAACYD---GRLDIVKYLIEHGADLNIT---------- 60 (237)
Q Consensus 2 l~~a~~~g~~~----~~~~L~~~~~~~~~----~~~~~~t~l~~A~~~---g~~~~v~~Ll~~~~~~~~~---------- 60 (237)
|+.|++.|+.+ ++++|++.|++++. .+..|.||||+|+.. |+.+++++|+++|++++..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 67899999997 66777789999998 899999999999999 9999999999998776533
Q ss_pred -CcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCC-------------CCCHHHHHHhcCCHHHHHHHHH---cCC
Q psy8421 61 -NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKT-------------QSTPLRAACYDGRLDIVKYLIE---HGA 123 (237)
Q Consensus 61 -~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~L~~---~~~ 123 (237)
+..|.||||+|+.. |+.+++++|++.|++++..+.. |.||||+|+..|+.+++++|++ +|+
T Consensus 86 ~d~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga 163 (256)
T 2etb_A 86 EFYQGHSALHIAIEK--RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA 163 (256)
T ss_dssp TTTTTCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred ccccCCCHHHHHHHc--CCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence 36799999999966 9999999999999999988876 9999999999999999999999 899
Q ss_pred CCccccCCCCchhHHHHHcCCCCHH-------HHHHHHhCCCCC-------CCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421 124 DLNITNHYNNSCLMIAAYKGAGHLS-------VIKTLVHAGADV-------NHSTKTQSTPLRAACYDGRLDIVKYLIEH 189 (237)
Q Consensus 124 ~~~~~~~~~~t~l~~a~~~~~~~~~-------~~~~l~~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~ 189 (237)
+++.++..|.||||+|+..+.++.+ ++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++
T Consensus 164 ~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 164 SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243 (256)
T ss_dssp CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 9999999999999999984348888 999999999998 88999999999999999999999999999
Q ss_pred CCCccc
Q psy8421 190 GADLNI 195 (237)
Q Consensus 190 g~~~~~ 195 (237)
|.++..
T Consensus 244 g~~~~~ 249 (256)
T 2etb_A 244 EFSGAA 249 (256)
T ss_dssp HHHHHH
T ss_pred CCCCCC
Confidence 876543
No 45
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=9.7e-39 Score=235.34 Aligned_cols=193 Identities=26% Similarity=0.292 Sum_probs=172.0
Q ss_pred CCCCCCCcHHHHHHHcCChhHHHHHHHcCC----CccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCC
Q psy8421 26 HSTKTQSTPLRAACYDGRLDIVKYLIEHGA----DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 101 (237)
Q Consensus 26 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 101 (237)
..|..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+.. |+.+++++|++.|++++..+..|.|
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t 80 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT--NQPEIAEALLGAGCDPELRDFRGNT 80 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHT--TCHHHHHCCCSCCCCSCCCCTTCCC
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCC
Confidence 467889999999999999999999997765 6888999999999999966 9999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCC------CccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHH
Q psy8421 102 PLRAACYDGRLDIVKYLIEHGAD------LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK-TQSTPLRAA 174 (237)
Q Consensus 102 ~l~~a~~~~~~~~~~~L~~~~~~------~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~t~l~~a 174 (237)
|||+|+..++.+++++|++.|.+ ++..+..|.||||+|+.. ++.+++++|+++|++++.++. .|.||||+|
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A 158 (236)
T 1ikn_D 81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH--GYLGIVELLVSLGADVNAQEPCNGRTALHLA 158 (236)
T ss_dssp HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHT--TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence 99999999999999999999875 456778899999999988 999999999999999999998 999999999
Q ss_pred HHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccccCcccccc
Q psy8421 175 CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDR 224 (237)
Q Consensus 175 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~ 224 (237)
+..|+.+++++|+++|++++.+|..|.||+++|+..|.. ++...|++.
T Consensus 159 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~--~~~~~Ll~~ 206 (236)
T 1ikn_D 159 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST--RIQQQLGQL 206 (236)
T ss_dssp HHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCH--HHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCch--HHHHHHHHc
Confidence 999999999999999999999999999999999988754 444444443
No 46
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=5.1e-38 Score=236.35 Aligned_cols=200 Identities=20% Similarity=0.312 Sum_probs=167.8
Q ss_pred chhhccCCcHHHHHHHHH----cCCCCC----CCCCCCCcHHHHHHHc---CChhHHHHHHHcCCCc-------cc----
Q psy8421 2 IAAYKGAGHLSVIKTLVH----AGADVN----HSTKTQSTPLRAACYD---GRLDIVKYLIEHGADL-------NI---- 59 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~----~~~~~~----~~~~~~~t~l~~A~~~---g~~~~v~~Ll~~~~~~-------~~---- 59 (237)
|+.|++.|+.++++.|++ .+.+++ ..+..|.||||+|+.. |+.+++++|+++|+++ +.
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~ 96 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTD 96 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccccc
Confidence 678999999999998887 455554 3578999999999987 9999999999987542 22
Q ss_pred cCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCC--------------CCCCHHHHHHhcCCHHHHHHHHH---cC
Q psy8421 60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK--------------TQSTPLRAACYDGRLDIVKYLIE---HG 122 (237)
Q Consensus 60 ~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~--------------~~~~~l~~a~~~~~~~~~~~L~~---~~ 122 (237)
.+..|.||||+|+.. |+.+++++|++.|++++..+. .|.||||+|+..++.+++++|++ .|
T Consensus 97 ~d~~g~tpL~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g 174 (273)
T 2pnn_A 97 SYYKGQTALHIAIER--RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP 174 (273)
T ss_dssp TTTTTCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred ccCCCCCHHHHHHHc--CCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCC
Confidence 566899999999966 999999999999999998886 79999999999999999999999 99
Q ss_pred CCCccccCCCCchhHHHHHcCCCC---------HHHHHHHHhCCCCCC-------CCCCCCCCHHHHHHHcCChhHHHHH
Q psy8421 123 ADLNITNHYNNSCLMIAAYKGAGH---------LSVIKTLVHAGADVN-------HSTKTQSTPLRAACYDGRLDIVKYL 186 (237)
Q Consensus 123 ~~~~~~~~~~~t~l~~a~~~~~~~---------~~~~~~l~~~~~~~~-------~~~~~~~t~l~~a~~~~~~~~~~~L 186 (237)
++++.++..|.||||+|+.. ++ .+++++|+++|++++ .++..|.||||+|+..|+.+++++|
T Consensus 175 ad~~~~d~~g~tpLh~A~~~--~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~L 252 (273)
T 2pnn_A 175 ADISARDSVGNTVLHALVEV--ADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI 252 (273)
T ss_dssp CCTTCCCTTSCCHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCceeeCCCCCcHHHHHHHc--cCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHH
Confidence 99999999999999999987 55 789999999999886 4899999999999999999999999
Q ss_pred HHcCC-CcccccCCCCcHHH
Q psy8421 187 IEHGA-DLNITNHYNNSCLM 205 (237)
Q Consensus 187 l~~g~-~~~~~~~~g~t~l~ 205 (237)
+++|+ ++......+.+|.+
T Consensus 253 l~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 253 LQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp HHHHTC--------------
T ss_pred HHCCCCCchhhhhhhhhccC
Confidence 99999 88888777777653
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=7.7e-38 Score=233.24 Aligned_cols=192 Identities=23% Similarity=0.275 Sum_probs=170.7
Q ss_pred CCCcHHHHHHHcCChh----HHHHHHHcCCCccc----cCcCCCcHHHHHHHh-CCCCHHHHHHHHHcCCCCccC-----
Q psy8421 30 TQSTPLRAACYDGRLD----IVKYLIEHGADLNI----TNHYNNSCLMIAAYK-GAGHLSVIKTLVHAGADVNHS----- 95 (237)
Q Consensus 30 ~~~t~l~~A~~~g~~~----~v~~Ll~~~~~~~~----~~~~~~~~l~~a~~~-~~~~~~~~~~ll~~~~~~~~~----- 95 (237)
.|.||||.|+..|+.+ ++++|++.|.+++. .+..|.||||+|+.. ..|+.+++++|++.|++++..
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 3789999999999997 55677778999998 899999999999943 128999999999988776533
Q ss_pred ------CCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCC-------------CCchhHHHHHcCCCCHHHHHHHHh-
Q psy8421 96 ------TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY-------------NNSCLMIAAYKGAGHLSVIKTLVH- 155 (237)
Q Consensus 96 ------~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~-------------~~t~l~~a~~~~~~~~~~~~~l~~- 155 (237)
+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+.. ++.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~--~~~~~v~~Ll~~ 158 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT--KQWDVVTYLLEN 158 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT--TCHHHHHHHHHC
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHc--CCHHHHHHHHhc
Confidence 367999999999999999999999999999988876 99999999988 99999999999
Q ss_pred --CCCCCCCCCCCCCCHHHHHHH--cCChh-------HHHHHHHcCCCc-------ccccCCCCcHHHHHHHhCcccccc
Q psy8421 156 --AGADVNHSTKTQSTPLRAACY--DGRLD-------IVKYLIEHGADL-------NITNHYNNSCLMIAAYKGIDVGRV 217 (237)
Q Consensus 156 --~~~~~~~~~~~~~t~l~~a~~--~~~~~-------~~~~Ll~~g~~~-------~~~~~~g~t~l~~a~~~~~~~~~~ 217 (237)
+|++++.+|..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|+||+|+|+..|.. ++
T Consensus 159 ~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~--~~ 236 (256)
T 2etb_A 159 PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKI--EI 236 (256)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCH--HH
T ss_pred cccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCH--HH
Confidence 999999999999999999999 77888 999999999999 99999999999999999965 55
Q ss_pred Cccccccc
Q psy8421 218 GPGLFDRY 225 (237)
Q Consensus 218 ~~~~~~~~ 225 (237)
...|+++.
T Consensus 237 v~~Ll~~g 244 (256)
T 2etb_A 237 FRHILQRE 244 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhCC
Confidence 55565553
No 48
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-36 Score=230.60 Aligned_cols=216 Identities=27% Similarity=0.331 Sum_probs=186.8
Q ss_pred hhhccCCcHHHHHHHHHcCCCCCC---------CCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHH
Q psy8421 3 AAYKGAGHLSVIKTLVHAGADVNH---------STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY 73 (237)
Q Consensus 3 ~~a~~~g~~~~~~~L~~~~~~~~~---------~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~ 73 (237)
..+++.|+.+.++.++.....+.. .+..+.|||+.|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 82 (299)
T 1s70_B 3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACI 82 (299)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 346677888888888877655332 22356799999999999999999999999999999999999999996
Q ss_pred hCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHH
Q psy8421 74 KGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTL 153 (237)
Q Consensus 74 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l 153 (237)
. |+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+|+|+.. +..++++.+
T Consensus 83 ~--g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~--~~~~~~~~l 158 (299)
T 1s70_B 83 D--DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE--AMEELLQNE 158 (299)
T ss_dssp T--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH--HHHHHHHHH
T ss_pred c--CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc--chHHHHHHH
Confidence 6 999999999999999999999999999999999999999999999999999999999999999977 888888766
Q ss_pred HhC-CCC--------------------------CCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHH
Q psy8421 154 VHA-GAD--------------------------VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206 (237)
Q Consensus 154 ~~~-~~~--------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~ 206 (237)
+.. +.+ ....+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~ 238 (299)
T 1s70_B 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHA 238 (299)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHH
T ss_pred HhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 542 222 23456789999999999999999999999999999999999999999
Q ss_pred HHHhCccccccCcccccc
Q psy8421 207 AAYKGIDVGRVGPGLFDR 224 (237)
Q Consensus 207 a~~~~~~~~~~~~~~~~~ 224 (237)
|+..|.. ++...|++.
T Consensus 239 A~~~~~~--~~v~~Ll~~ 254 (299)
T 1s70_B 239 AAHWGKE--EACRILVEN 254 (299)
T ss_dssp HHHTTCH--HHHHHHHHT
T ss_pred HHhcCCH--HHHHHHHHc
Confidence 9999865 444444443
No 49
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3e-36 Score=236.07 Aligned_cols=188 Identities=23% Similarity=0.307 Sum_probs=176.1
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcC---CCccccCcCCCcHHHHHHHhCCC-
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG---ADLNITNHYNNSCLMIAAYKGAG- 77 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~~~~~l~~a~~~~~~- 77 (237)
|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++++ .+++..+..|.||||+|+.. +
T Consensus 170 L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~--~~ 247 (373)
T 2fo1_E 170 LMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN--EG 247 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHS--CS
T ss_pred HHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHh--CC
Confidence 57899999999999999999999999999999999999999999999999987 78999999999999999965 5
Q ss_pred --CHHHHHHHHHcCCCCcc--------CCCCCCCHHHHHHhcCCHHHHHHHHHcC-CCCccccCCCCchhHHHHHcCCCC
Q psy8421 78 --HLSVIKTLVHAGADVNH--------STKTQSTPLRAACYDGRLDIVKYLIEHG-ADLNITNHYNNSCLMIAAYKGAGH 146 (237)
Q Consensus 78 --~~~~~~~ll~~~~~~~~--------~~~~~~~~l~~a~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~l~~a~~~~~~~ 146 (237)
+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+.. ++
T Consensus 248 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~--g~ 325 (373)
T 2fo1_E 248 RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE--GR 325 (373)
T ss_dssp TTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH--TC
T ss_pred cchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHc--CC
Confidence 89999999999998875 5668999999999999999999999886 99999999999999999998 99
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCc
Q psy8421 147 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 193 (237)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~ 193 (237)
.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++++++.
T Consensus 326 ~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 326 IEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp HHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred HHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999998763
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=5.6e-37 Score=230.64 Aligned_cols=199 Identities=22% Similarity=0.251 Sum_probs=168.0
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHH----cCCCcc----ccCcCCCcHHHHHHHh-CCCCHHHHHHHHHcCCC
Q psy8421 21 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIE----HGADLN----ITNHYNNSCLMIAAYK-GAGHLSVIKTLVHAGAD 91 (237)
Q Consensus 21 ~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~----~~~~~~----~~~~~~~~~l~~a~~~-~~~~~~~~~~ll~~~~~ 91 (237)
++..+..+..|.||||+|+..|+.++|+.|++ .+.+++ ..+..|.||||+|+.. +.|+.+++++|++.|++
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~ 82 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK 82 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence 45566778899999999999999999998886 455554 3578899999999953 23899999999998754
Q ss_pred C-------c----cCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccC--------------CCCchhHHHHHcCCCC
Q psy8421 92 V-------N----HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH--------------YNNSCLMIAAYKGAGH 146 (237)
Q Consensus 92 ~-------~----~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~--------------~~~t~l~~a~~~~~~~ 146 (237)
+ + ..+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+.. ++
T Consensus 83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~--g~ 160 (273)
T 2pnn_A 83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT--NQ 160 (273)
T ss_dssp TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHT--TC
T ss_pred ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHc--CC
Confidence 2 2 2566899999999999999999999999999998886 799999999988 99
Q ss_pred HHHHHHHHh---CCCCCCCCCCCCCCHHHHHHHcCC---------hhHHHHHHHcCCCcc-------cccCCCCcHHHHH
Q psy8421 147 LSVIKTLVH---AGADVNHSTKTQSTPLRAACYDGR---------LDIVKYLIEHGADLN-------ITNHYNNSCLMIA 207 (237)
Q Consensus 147 ~~~~~~l~~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~g~~~~-------~~~~~g~t~l~~a 207 (237)
.+++++|++ +|++++.+|..|+||||+|+..++ .+++++|+++|++++ .+|..|.||||+|
T Consensus 161 ~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A 240 (273)
T 2pnn_A 161 LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240 (273)
T ss_dssp HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence 999999999 999999999999999999999988 799999999999996 5899999999999
Q ss_pred HHhCccccccCccccc
Q psy8421 208 AYKGIDVGRVGPGLFD 223 (237)
Q Consensus 208 ~~~~~~~~~~~~~~~~ 223 (237)
+..|.. ++...|++
T Consensus 241 ~~~g~~--~iv~~Ll~ 254 (273)
T 2pnn_A 241 ASSGKI--GVLAYILQ 254 (273)
T ss_dssp HHTTCH--HHHHHHHH
T ss_pred HHhChH--HHHHHHHH
Confidence 999965 44444444
No 51
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=217.97 Aligned_cols=190 Identities=26% Similarity=0.357 Sum_probs=174.8
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~-~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 80 (237)
++.|++.|+.+++++|++.|.+++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+
T Consensus 46 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~--~~~~ 123 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF--GHTS 123 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHH
T ss_pred HHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc--CHHH
Confidence 678999999999999999999987655 4499999999999999999999999999999999999999999966 9999
Q ss_pred HHHHHHHcCCCCccCCCCCCCHHHHHHhcCC-HHHHHHHHHcCCCCccccC-CCCchhHHHHHcCCCCHHHHHHHHhCCC
Q psy8421 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGR-LDIVKYLIEHGADLNITNH-YNNSCLMIAAYKGAGHLSVIKTLVHAGA 158 (237)
Q Consensus 81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~L~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~~~l~~~~~ 158 (237)
++++|++.|.+++..+..|.+|+|.|+..+. .+++++|++.|.+++..+. .|.||||+|+.. ++.+++++|+++|+
T Consensus 124 ~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~ 201 (240)
T 3eu9_A 124 IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA--GNTTVISLLLEAGA 201 (240)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHH--TCHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHc--CCHHHHHHHHHcCC
Confidence 9999999999999999999999999996665 8999999999999998886 899999999998 99999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCccc
Q psy8421 159 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195 (237)
Q Consensus 159 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~ 195 (237)
+++.++..|.||+++|+..++.+++++|++++.+...
T Consensus 202 ~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 202 NVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238 (240)
T ss_dssp CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence 9999999999999999999999999999999887654
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=8.6e-37 Score=228.03 Aligned_cols=192 Identities=21% Similarity=0.222 Sum_probs=167.1
Q ss_pred chhhccCCcHHHHHHHH----HcCCCCCCCC----CCCCcHHHHHH---HcCChhHHHHHHHcCCC-----------ccc
Q psy8421 2 IAAYKGAGHLSVIKTLV----HAGADVNHST----KTQSTPLRAAC---YDGRLDIVKYLIEHGAD-----------LNI 59 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~----~~~~~~~~~~----~~~~t~l~~A~---~~g~~~~v~~Ll~~~~~-----------~~~ 59 (237)
|+.|++.|+.+.++.|+ +.|.+++..+ ..|.||||+|+ ..|+.+++++|++.|.+ .+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 57899999999555444 5899888655 77999999999 77999999999998743 344
Q ss_pred cCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCC--------------CCCCCHHHHHHhcCCHHHHHHHHH---cC
Q psy8421 60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHST--------------KTQSTPLRAACYDGRLDIVKYLIE---HG 122 (237)
Q Consensus 60 ~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~L~~---~~ 122 (237)
.+..|.||||+|+.. |+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++ .|
T Consensus 89 ~d~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g 166 (260)
T 3jxi_A 89 VYYRGQTALHIAIER--RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166 (260)
T ss_dssp SSEESBCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred cccCCCCHHHHHHHc--CCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence 556899999999966 99999999999999999888 579999999999999999999999 89
Q ss_pred CCCccccCCCCchhHHHHHcCCCC-------HHHHHHHHhCCCCC-------CCCCCCCCCHHHHHHHcCChhHHHHHHH
Q psy8421 123 ADLNITNHYNNSCLMIAAYKGAGH-------LSVIKTLVHAGADV-------NHSTKTQSTPLRAACYDGRLDIVKYLIE 188 (237)
Q Consensus 123 ~~~~~~~~~~~t~l~~a~~~~~~~-------~~~~~~l~~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~ 188 (237)
++++.++..|.||||+|+..+.+. .+++++|+++|+++ +.++..|.||||+|+..|+.+++++|++
T Consensus 167 a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~ 246 (260)
T 3jxi_A 167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246 (260)
T ss_dssp CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999872222 68999999999888 6799999999999999999999999999
Q ss_pred cCCCccc
Q psy8421 189 HGADLNI 195 (237)
Q Consensus 189 ~g~~~~~ 195 (237)
+|.++..
T Consensus 247 ~g~~~~~ 253 (260)
T 3jxi_A 247 REIADAA 253 (260)
T ss_dssp HHHHHHC
T ss_pred hCCCccc
Confidence 9876543
No 53
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=1.6e-35 Score=207.85 Aligned_cols=169 Identities=24% Similarity=0.312 Sum_probs=154.2
Q ss_pred CCcHHHHHHHcCChhHHHHHHHcCCC-ccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhc
Q psy8421 31 QSTPLRAACYDGRLDIVKYLIEHGAD-LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD 109 (237)
Q Consensus 31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~ 109 (237)
+.||||.|+..|+.+++++|++.+.. ++..+..|.||||+|+.. |+.+++++|++.|++++..+..|.||+|+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF--GEIETVRFLLEWGADPHILAKERESALSLASTG 79 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHT--TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC
Confidence 46899999999999999999998877 788899999999999966 999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421 110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189 (237)
Q Consensus 110 ~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~ 189 (237)
++.+++++|+++|++++..+..|.||||+|+.. ++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++
T Consensus 80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG--NHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 999999999999999999999999999999988 999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCcH
Q psy8421 190 GADLNITNHYNNSC 203 (237)
Q Consensus 190 g~~~~~~~~~g~t~ 203 (237)
|+++...+..|.||
T Consensus 158 ~~~~~~~~~~~~~p 171 (172)
T 3v30_A 158 ILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHSCC-------
T ss_pred HHHHhcccCCCCCC
Confidence 99999999888887
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=1.8e-36 Score=226.32 Aligned_cols=197 Identities=21% Similarity=0.194 Sum_probs=171.3
Q ss_pred CCCCCcHHHHHHHcCChhHHHHHH----HcCCCccccC----cCCCcHHHHHHHh-CCCCHHHHHHHHHcCCC-------
Q psy8421 28 TKTQSTPLRAACYDGRLDIVKYLI----EHGADLNITN----HYNNSCLMIAAYK-GAGHLSVIKTLVHAGAD------- 91 (237)
Q Consensus 28 ~~~~~t~l~~A~~~g~~~~v~~Ll----~~~~~~~~~~----~~~~~~l~~a~~~-~~~~~~~~~~ll~~~~~------- 91 (237)
+..+.++||.|+..|+.+.++.|+ +.|.+++..+ ..|.||||+|+.. ..|+.+++++|++.|++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 456889999999999999655555 4899988765 6799999999932 23899999999998743
Q ss_pred ----CccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCcccc--------------CCCCchhHHHHHcCCCCHHHHHHH
Q psy8421 92 ----VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN--------------HYNNSCLMIAAYKGAGHLSVIKTL 153 (237)
Q Consensus 92 ----~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~~~l 153 (237)
.+..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.. ++.+++++|
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~--g~~~~v~~L 159 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACT--NQPHIVHYL 159 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHT--TCHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHc--CCHHHHHHH
Confidence 34455589999999999999999999999999999988 5899999999988 999999999
Q ss_pred Hh---CCCCCCCCCCCCCCHHHHHHHcCC---------hhHHHHHHHcCCCc-------ccccCCCCcHHHHHHHhCccc
Q psy8421 154 VH---AGADVNHSTKTQSTPLRAACYDGR---------LDIVKYLIEHGADL-------NITNHYNNSCLMIAAYKGIDV 214 (237)
Q Consensus 154 ~~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~Ll~~g~~~-------~~~~~~g~t~l~~a~~~~~~~ 214 (237)
++ +|++++.+|..|+||||+|+..++ .+++++|+++|+++ +.+|..|.||||+|+..|..
T Consensus 160 l~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~- 238 (260)
T 3jxi_A 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI- 238 (260)
T ss_dssp HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH-
T ss_pred HhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCH-
Confidence 99 999999999999999999998887 69999999999999 78999999999999999965
Q ss_pred cccCcccccccccc
Q psy8421 215 GRVGPGLFDRYPSA 228 (237)
Q Consensus 215 ~~~~~~~~~~~~~~ 228 (237)
++...|+++.+..
T Consensus 239 -~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 239 -GIFQHIIRREIAD 251 (260)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHhCCCc
Confidence 6677777665443
No 55
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=4e-35 Score=209.42 Aligned_cols=163 Identities=26% Similarity=0.351 Sum_probs=155.7
Q ss_pred CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHH
Q psy8421 24 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 103 (237)
Q Consensus 24 ~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l 103 (237)
++..|..|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+.. ++.+++++|++.|++++..+..|.||+
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L 105 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKN--NRLGIAEKLLSKGSNVNTKDFSGKTPL 105 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence 466788999999999999999999999999999999999999999999966 999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHH
Q psy8421 104 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIV 183 (237)
Q Consensus 104 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~ 183 (237)
|+|+..++.+++++|+++|++++.++..|.||+|+|+.. ++.+++++|+++|++++.++..|.||+|+|+..|+.+++
T Consensus 106 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v 183 (192)
T 2rfm_A 106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY--GRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI 183 (192)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH--TCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHH
Confidence 999999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHcC
Q psy8421 184 KYLIEHG 190 (237)
Q Consensus 184 ~~Ll~~g 190 (237)
++|+++|
T Consensus 184 ~~Ll~~~ 190 (192)
T 2rfm_A 184 KIFTEVR 190 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9999764
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=100.00 E-value=9.3e-36 Score=224.15 Aligned_cols=185 Identities=23% Similarity=0.317 Sum_probs=141.3
Q ss_pred hhhccCCcHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCC-CccccCcCCCcHHHHHHHh---CC
Q psy8421 3 AAYKGAGHLSVIKTLVHAGAD--VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYK---GA 76 (237)
Q Consensus 3 ~~a~~~g~~~~~~~L~~~~~~--~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~~~---~~ 76 (237)
+.|+..|+++.++.+++.+.+ ++..|..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+.. ..
T Consensus 81 ~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~ 160 (276)
T 4hbd_A 81 HPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQ 160 (276)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSH
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhh
Confidence 345556777777777766555 66777778888888888888888888888776 7777777788888887732 11
Q ss_pred CCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHh-
Q psy8421 77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH- 155 (237)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~- 155 (237)
++.+++++|++.|...+..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.. ++.+++++|++
T Consensus 161 ~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~--g~~~iv~~Ll~~ 238 (276)
T 4hbd_A 161 DDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEH--GHKEIAGLLLAV 238 (276)
T ss_dssp HHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHTS
T ss_pred hhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHC--CCHHHHHHHHhc
Confidence 567777888887777777777778888888888888888888888888877777888888888877 77888888887
Q ss_pred CCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421 156 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189 (237)
Q Consensus 156 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~ 189 (237)
.|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 239 ~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 239 PSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 7778877788888888888888888888887765
No 57
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=228.00 Aligned_cols=211 Identities=18% Similarity=0.190 Sum_probs=176.5
Q ss_pred HHHHHHcCCCCCCCC---CCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCC
Q psy8421 14 IKTLVHAGADVNHST---KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 90 (237)
Q Consensus 14 ~~~L~~~~~~~~~~~---~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~ 90 (237)
++.|++.|++++..+ .++.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. |+.+++++|++.|+
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~--g~~~~v~~Ll~~ga 78 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG--ANYSIVDFLITAGA 78 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHCCC
Confidence 467888888876544 4566789999999999999999999999999999999999999966 99999999999999
Q ss_pred CCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCcccc-CCCCchhHHH--HHcCCCCHHHHHHHHhCCCCCCCCCCCC
Q psy8421 91 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIA--AYKGAGHLSVIKTLVHAGADVNHSTKTQ 167 (237)
Q Consensus 91 ~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 167 (237)
+++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||+|+| +.. ++.+++++|+++|++++.++..+
T Consensus 79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~--~~~~~v~~Ll~~ga~~~~~~~~~ 156 (229)
T 2vge_A 79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE--GYADCATYLADVEQSMGLMNSGA 156 (229)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTST--THHHHHHHHHHHHHHTTTSGGGE
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhc--ChHHHHHHHHHcCCCcccccCCc
Confidence 999999999999999999999999999999999999986 6999999999 755 99999999999999999999999
Q ss_pred CCHHHHHHHcCChhHHHHHHHcCCC--cccccCCCCcHHHHHHHhCccccccCcccccccccccccc
Q psy8421 168 STPLRAACYDGRLDIVKYLIEHGAD--LNITNHYNNSCLMIAAYKGIDVGRVGPGLFDRYPSAVTSN 232 (237)
Q Consensus 168 ~t~l~~a~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (237)
.||++.++.... .++|++.|++ ++.+|..|+||||+|+..|.. ..+...+++.||...+..
T Consensus 157 ~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~-~~v~~~~l~~~p~~~~~~ 219 (229)
T 2vge_A 157 VYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQE-GYVPRNYFGLFPRVKPQR 219 (229)
T ss_dssp EEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEE-EEEEGGGEESSCCCC---
T ss_pred hHHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCc-ceeehhhhhhCCCCCCch
Confidence 999986555443 3577888988 778899999999999999855 444455888888876653
No 58
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=2.9e-34 Score=200.47 Aligned_cols=160 Identities=26% Similarity=0.335 Sum_probs=152.8
Q ss_pred CCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhc
Q psy8421 30 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD 109 (237)
Q Consensus 30 ~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~ 109 (237)
.|.||||.|+..|+.+++++|++.+.+++..+..|.||||+|+.. |+.+++++|++.|++++..+..|.||+|+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH--GQIAVVEFLLQNGADPQLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHC--CCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 578999999999999999999999999999999999999999966 999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421 110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189 (237)
Q Consensus 110 ~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~ 189 (237)
++.+++++|+++|++++..+..|.||+|+|+.. ++.+++++|+++|++++.++..|.||+|+|+..|+.+++++|+++
T Consensus 80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG--NHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157 (167)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence 999999999999999999999999999999988 999999999999999999999999999999999999999999988
Q ss_pred CCCc
Q psy8421 190 GADL 193 (237)
Q Consensus 190 g~~~ 193 (237)
+.+.
T Consensus 158 ~~~~ 161 (167)
T 3v31_A 158 LLKL 161 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 59
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=2.3e-34 Score=200.00 Aligned_cols=158 Identities=27% Similarity=0.391 Sum_probs=149.2
Q ss_pred CCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhc
Q psy8421 30 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD 109 (237)
Q Consensus 30 ~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~ 109 (237)
...|||+.|+..|+.+++++|+++|.+++..+..|.||||+|+ . ++.+++++|++.|.+++.++..|.||+|+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~--~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK--L-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC--S-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHH--c-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 4668999999999999999999999999999999999999998 6 899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCChhHHHHHHH
Q psy8421 110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIE 188 (237)
Q Consensus 110 ~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~ 188 (237)
++.+++++|+++|++++.++..|.||+|+|+.. ++.+++++|+++|.+ ++.++..|.||||+|+..|+.+++++|++
T Consensus 81 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 158 (162)
T 1ihb_A 81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE--GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158 (162)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999988 999999999999987 58999999999999999999999999999
Q ss_pred cCCC
Q psy8421 189 HGAD 192 (237)
Q Consensus 189 ~g~~ 192 (237)
+|++
T Consensus 159 ~GAd 162 (162)
T 1ihb_A 159 NGAG 162 (162)
T ss_dssp TC--
T ss_pred hCCC
Confidence 9985
No 60
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=5.6e-34 Score=199.41 Aligned_cols=159 Identities=34% Similarity=0.500 Sum_probs=149.1
Q ss_pred CCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHH
Q psy8421 28 TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 107 (237)
Q Consensus 28 ~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~ 107 (237)
...+.++++.|+..|+.+++++|+++|.+++..+..|.||||+|+.. |+.+++++|++.|++++..+..|.||+|+|+
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN--GHLEIVEVLLKNGADVNAVDHAGMTPLRLAA 88 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 44567899999999999999999999999999999999999999966 9999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHH
Q psy8421 108 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187 (237)
Q Consensus 108 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll 187 (237)
..++.+++++|+++|++++..+..|.||+|+|+.. ++.+++++|+++|++++.++..|.||+++|+..++.+++++|+
T Consensus 89 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 89 LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF--GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166 (169)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred HcC
Q psy8421 188 EHG 190 (237)
Q Consensus 188 ~~g 190 (237)
+.|
T Consensus 167 ~~G 169 (169)
T 2y1l_E 167 KLN 169 (169)
T ss_dssp TC-
T ss_pred HcC
Confidence 875
No 61
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=100.00 E-value=5e-35 Score=220.16 Aligned_cols=188 Identities=22% Similarity=0.355 Sum_probs=172.0
Q ss_pred CCcHHHHHHHcCChhHHHHHHHcCCC--ccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCC-CCccCCCCCCCHHHHHH
Q psy8421 31 QSTPLRAACYDGRLDIVKYLIEHGAD--LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAAC 107 (237)
Q Consensus 31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~ 107 (237)
..+++|.|+..|+.+.++.+++.+.+ ++..|..|.||||+|+.. |+.+++++|++.|. +++..+..|.||+|+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~ 153 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSH--ANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA 153 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHC--CCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence 35677889999999999999887665 788999999999999966 99999999999998 99999999999999999
Q ss_pred -----hcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhH
Q psy8421 108 -----YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDI 182 (237)
Q Consensus 108 -----~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~ 182 (237)
..++.+++++|++.|...+..+..|.||||+|+.. ++.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus 154 ~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~--g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~i 231 (276)
T 4hbd_A 154 LATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSH--GRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEI 231 (276)
T ss_dssp GCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHc--CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence 66889999999999999988899999999999988 99999999999999999999999999999999999999
Q ss_pred HHHHHH-cCCCcccccCCCCcHHHHHHHhCccccccCcccccc
Q psy8421 183 VKYLIE-HGADLNITNHYNNSCLMIAAYKGIDVGRVGPGLFDR 224 (237)
Q Consensus 183 ~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~ 224 (237)
+++|++ .|++++.+|..|+||+|+|+..|.. ++...|+++
T Consensus 232 v~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~--~iv~~Ll~~ 272 (276)
T 4hbd_A 232 AGLLLAVPSCDISLTDRDGSTALMVALDAGQS--EIASMLYSR 272 (276)
T ss_dssp HHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCH--HHHHHHHHH
T ss_pred HHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCH--HHHHHHHhc
Confidence 999999 8999999999999999999999865 455555443
No 62
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=100.00 E-value=1.6e-33 Score=198.91 Aligned_cols=168 Identities=27% Similarity=0.297 Sum_probs=152.1
Q ss_pred CCCCcHHHHHHHcCChhHHHHHHHc-CCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHH
Q psy8421 29 KTQSTPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 107 (237)
Q Consensus 29 ~~~~t~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~ 107 (237)
..+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+.. ++.+++++|++.|++++..+..|.||||+|+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE--GRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHc--CcHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 3567899999999999999999987 567888999999999999965 8999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHH
Q psy8421 108 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187 (237)
Q Consensus 108 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll 187 (237)
..++.+++++|+++|++++..+..|.||||+|+.. ++.+++++|+++|++++.++..|.||+++|+..++.+++++|+
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 81 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW--GQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred HcCCCcccccCCC
Q psy8421 188 EHGADLNITNHYN 200 (237)
Q Consensus 188 ~~g~~~~~~~~~g 200 (237)
++|++++..+..+
T Consensus 159 ~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 159 KMGQNLNRIPYKD 171 (179)
T ss_dssp HTTCCCSCBCCCC
T ss_pred HhhcCcccCCccc
Confidence 9999998776544
No 63
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=9.3e-34 Score=198.84 Aligned_cols=165 Identities=25% Similarity=0.316 Sum_probs=152.1
Q ss_pred chhhccCCcHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~-~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 80 (237)
|+.|++.|+.++++.|++.+.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~ 83 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG--GYTD 83 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT--TCHH
T ss_pred HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC--CCHH
Confidence 6789999999999999999987 788899999999999999999999999999999999999999999999966 9999
Q ss_pred HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160 (237)
Q Consensus 81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~ 160 (237)
++++|++.|++++..+..|.||+|+|+..++.+++++|+++|++++.++..|.||+++|+.. ++.+++++|++++.++
T Consensus 84 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~--~~~~~~~~L~~~~~~~ 161 (172)
T 3v30_A 84 IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL--GYRKVQQVIENHILKL 161 (172)
T ss_dssp HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHh--CcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 9999999999999988
Q ss_pred CCCCCCCCCH
Q psy8421 161 NHSTKTQSTP 170 (237)
Q Consensus 161 ~~~~~~~~t~ 170 (237)
..++..+.||
T Consensus 162 ~~~~~~~~~p 171 (172)
T 3v30_A 162 FQSNLVPADP 171 (172)
T ss_dssp SCC-------
T ss_pred hcccCCCCCC
Confidence 8888877776
No 64
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=7.2e-33 Score=193.74 Aligned_cols=152 Identities=33% Similarity=0.532 Sum_probs=146.2
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
++.|++.|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+.. ++.++
T Consensus 18 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~ 95 (169)
T 2y1l_E 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF--GHLEI 95 (169)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCHHH
Confidence 5779999999999999999999999999999999999999999999999999999999999999999999966 99999
Q ss_pred HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCC
Q psy8421 82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAG 157 (237)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~ 157 (237)
+++|++.|++++..+..|.||+|+|+..++.+++++|+++|++++.++..|.||+++|+.. ++.+++++|+++|
T Consensus 96 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~--~~~~~~~~L~~~G 169 (169)
T 2y1l_E 96 VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN--GNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHTC-
T ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh--CCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999988 9999999999875
No 65
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-32 Score=189.62 Aligned_cols=150 Identities=32% Similarity=0.458 Sum_probs=129.4
Q ss_pred CcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCC
Q psy8421 32 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 111 (237)
Q Consensus 32 ~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~ 111 (237)
.+||+.|+..|+.+++++|+++|.+++ .+..|.||||+|+.. |+.+++++|++.|.+++..+..|.||+|+|+..++
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY--GHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHH--TCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence 478889999999999999988888776 577788899998866 88888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHH
Q psy8421 112 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186 (237)
Q Consensus 112 ~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L 186 (237)
.+++++|+++|++++.++..|.||+|+|+.. ++.+++++|+++|++++.++..|.||+|+|+..|+.+++++|
T Consensus 80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHGADVNAKDMLKMTALHWATEH--NHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 8888888888888888888888888888877 888888888888888888888888888888888888888876
No 66
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=9.9e-33 Score=196.98 Aligned_cols=153 Identities=29% Similarity=0.325 Sum_probs=147.4
Q ss_pred ccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchh
Q psy8421 57 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136 (237)
Q Consensus 57 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l 136 (237)
++.+|..|.||||+|+.. |+.+++++|++.+.+++..+..|.||+|+|+..++.+++++|+++|++++..+..|.|||
T Consensus 28 ~n~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 105 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACML--GMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL 105 (192)
T ss_dssp HTCCCTTCCCHHHHHHHH--TCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred HhCcCCCCCCHHHHHHHc--CCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence 456888999999999977 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421 137 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID 213 (237)
Q Consensus 137 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~ 213 (237)
|+|+.. ++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|..
T Consensus 106 ~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~ 180 (192)
T 2rfm_A 106 MWSIIF--GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180 (192)
T ss_dssp HHHHHH--TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred HHHHHc--CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcH
Confidence 999998 999999999999999999999999999999999999999999999999999999999999999999854
No 67
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=9.6e-33 Score=191.78 Aligned_cols=153 Identities=25% Similarity=0.395 Sum_probs=145.6
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
++.|++.|+.+++++|++.|++++..+..|.||||+|+. |+.+++++|+++|.+++.++..|.||||+|+.. ++.++
T Consensus 9 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~ 85 (162)
T 1ihb_A 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA--GFLDT 85 (162)
T ss_dssp HHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--CCHHH
Confidence 578999999999999999999999999999999999999 999999999999999999999999999999977 99999
Q ss_pred HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCC-CccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCC
Q psy8421 82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD-LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 159 (237)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~ 159 (237)
+++|++.|.+++.++..|.||+|+|+..++.+++++|+++|.+ ++..+..|.||+|+|+.. ++.+++++|+++|++
T Consensus 86 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~--~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 86 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY--GRNEVVSLMQANGAG 162 (162)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTC--
T ss_pred HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHc--CCHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999987 588999999999999988 999999999999875
No 68
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=100.00 E-value=5.2e-33 Score=193.72 Aligned_cols=160 Identities=28% Similarity=0.380 Sum_probs=145.5
Q ss_pred CCCCCCcHHHHHHHcCChhHHHHHHH-cCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHH
Q psy8421 27 STKTQSTPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA 105 (237)
Q Consensus 27 ~~~~~~t~l~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~ 105 (237)
.+..+.|||+.|+..|+.+++++|++ .+.+++..+..|.||||+|+.. ++.+++++|++.|.+++..+..|.||+|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 81 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY--NRVSVVEYLLQHGADVHAKDKGGLVPLHN 81 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHc--ChHHHHHHHHhcCCCCCccCCCCCCHHHH
Confidence 35668899999999999999999997 4567777888899999999966 99999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHH
Q psy8421 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY 185 (237)
Q Consensus 106 a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~ 185 (237)
|+..++.+++++|+++|++++..+..|.||+|+|+.. ++.+++++|+++|++++.++..|.||+|+|+. ++.+++++
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~ 158 (165)
T 3twr_A 82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK--GKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDL 158 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHH
Confidence 9999999999999999999999999999999999988 99999999999999999999999999999876 89999999
Q ss_pred HHHcCC
Q psy8421 186 LIEHGA 191 (237)
Q Consensus 186 Ll~~g~ 191 (237)
|+++|+
T Consensus 159 L~~~gA 164 (165)
T 3twr_A 159 LRGDAA 164 (165)
T ss_dssp HHTC--
T ss_pred Hhhccc
Confidence 998875
No 69
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=100.00 E-value=5.7e-34 Score=210.16 Aligned_cols=182 Identities=19% Similarity=0.197 Sum_probs=137.7
Q ss_pred CCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHh
Q psy8421 29 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY 108 (237)
Q Consensus 29 ~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~ 108 (237)
..|.||||.|+..|+.+.++.|+++|.+++.. ..+.||||.|+.. |+.+++++|++.|++++..+..|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLE--GEFDLVQRIIYEVDDPSLPNDEGITALHNAVC 79 (239)
T ss_dssp -----------------------------------CHHHHHHHHHH--TCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 45899999999999999999999999999864 6789999999977 99999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHH--HHcCChhHHHH
Q psy8421 109 DGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAA--CYDGRLDIVKY 185 (237)
Q Consensus 109 ~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-t~l~~a--~~~~~~~~~~~ 185 (237)
.|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|+++|++++.++..+. ||+|+| +..|+.+++++
T Consensus 80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~ 157 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC--NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157 (239)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHH
Confidence 9999999999999999999999999999999988 999999999999999999998877 999999 78899999999
Q ss_pred HHHcCCCcccc---------cCCCCcHHHHHHHhCcccc
Q psy8421 186 LIEHGADLNIT---------NHYNNSCLMIAAYKGIDVG 215 (237)
Q Consensus 186 Ll~~g~~~~~~---------~~~g~t~l~~a~~~~~~~~ 215 (237)
|+++|++++.. +..+.++.+++...|..+.
T Consensus 158 Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~i~ 196 (239)
T 1ycs_B 158 LYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMT 196 (239)
T ss_dssp HHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCEEE
T ss_pred HHHhhhcccccccceEEEEeccCCCCCCcccccCCCEEE
Confidence 99999988776 5668899998888775443
No 70
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=100.00 E-value=4.4e-32 Score=191.53 Aligned_cols=162 Identities=25% Similarity=0.381 Sum_probs=153.3
Q ss_pred chhhccCCcHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~-~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 80 (237)
|+.|++.|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+
T Consensus 9 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~ 86 (179)
T 3f6q_A 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH--GHRD 86 (179)
T ss_dssp HHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHH
T ss_pred HHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CCHH
Confidence 5789999999999999998 567899999999999999999999999999999999999999999999999966 9999
Q ss_pred HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160 (237)
Q Consensus 81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~ 160 (237)
++++|++.|++++..+..|.||+|+|+..++.+++++|+++|++++..+..|.||+++|+.. ++.+++++|+++|.++
T Consensus 87 ~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~--~~~~~~~~L~~~g~~~ 164 (179)
T 3f6q_A 87 IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAP--LRELLRERAEKMGQNL 164 (179)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHH--HHHHHHHHHHHTTCCC
T ss_pred HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHH--HHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999988 9999999999999999
Q ss_pred CCCCCCC
Q psy8421 161 NHSTKTQ 167 (237)
Q Consensus 161 ~~~~~~~ 167 (237)
+..+..+
T Consensus 165 ~~~~~~~ 171 (179)
T 3f6q_A 165 NRIPYKD 171 (179)
T ss_dssp SCBCCCC
T ss_pred ccCCccc
Confidence 8765543
No 71
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=2.8e-32 Score=190.38 Aligned_cols=155 Identities=26% Similarity=0.368 Sum_probs=148.9
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
|+.|++.|+.+++++|++.+.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.++
T Consensus 7 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~ 84 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK--GYTDI 84 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH--TCHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc--CCHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999977 99999
Q ss_pred HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421 82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160 (237)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~ 160 (237)
+++|++.|++++..+..|.||+|+|+..++.+++++|+++|++++..+..|.||+++|+.. ++.+++++|++++.++
T Consensus 85 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~--~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 85 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVAL--GYRSVQQVIESHLLKL 161 (167)
T ss_dssp HHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 9999999999876543
No 72
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=100.00 E-value=1e-31 Score=185.46 Aligned_cols=153 Identities=26% Similarity=0.394 Sum_probs=141.3
Q ss_pred CCcHHHHHHHcCChhHHHHHHHc-CCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhc
Q psy8421 31 QSTPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD 109 (237)
Q Consensus 31 ~~t~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~ 109 (237)
+.|||+.|+..|+.+++++|++. +.+++..+..|.||||+ + ..|+.+++++|++.|++++..+..|.||+|+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~--~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-M--MFGSTAIALELLKQGASPNVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-S--CTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-H--HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence 45899999999999999999987 44888899999999999 7 44999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421 110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189 (237)
Q Consensus 110 ~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~ 189 (237)
|+.+++++|+++|++++..+..|.||+|+|+.. ++.+++++|+++ .+++.++..|.||||+|+..|+.+++++|+++
T Consensus 79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE--GHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH--TCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHh--ChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999999999999999999999999988 999999999999 99999999999999999999999999999864
No 73
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-33 Score=217.00 Aligned_cols=204 Identities=15% Similarity=0.132 Sum_probs=159.5
Q ss_pred cCCcHHHHHHHHHcCCCCCCC-----------------CCCCCcHHHHHHHcCChhHHHHHHHcCCCccc-cCcCCCcHH
Q psy8421 7 GAGHLSVIKTLVHAGADVNHS-----------------TKTQSTPLRAACYDGRLDIVKYLIEHGADLNI-TNHYNNSCL 68 (237)
Q Consensus 7 ~~g~~~~~~~L~~~~~~~~~~-----------------~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~l 68 (237)
..|+.++++.|++.|++++.. .....+..|.|+..+..+++++|++.|++++. .+..|.|||
T Consensus 56 ~~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpL 135 (327)
T 1sw6_A 56 DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL 135 (327)
T ss_dssp CHHHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHH
T ss_pred cCchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHH
Confidence 348999999999999886541 11112335778888888999999999999999 899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCC---HHHHHHHHHcC-CCCccccCCCCchhHHHHH---
Q psy8421 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR---LDIVKYLIEHG-ADLNITNHYNNSCLMIAAY--- 141 (237)
Q Consensus 69 ~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~L~~~~-~~~~~~~~~~~t~l~~a~~--- 141 (237)
|+|+.. |+.+++++|++.|++++.++..|.||||+|+..|+ .++++.|++.+ .+++.++..|.||||+|+.
T Consensus 136 h~Aa~~--g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~ 213 (327)
T 1sw6_A 136 HWLTSI--ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 213 (327)
T ss_dssp HHHHHT--TCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHT
T ss_pred HHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcc
Confidence 999966 99999999999999999999999999999999998 67888888875 6788999999999999998
Q ss_pred -cCCCCHHHHHHHHhC--------------------CCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCC
Q psy8421 142 -KGAGHLSVIKTLVHA--------------------GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN 200 (237)
Q Consensus 142 -~~~~~~~~~~~l~~~--------------------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g 200 (237)
. ++.+++++|++. |++++.++..|.||||.|+. +++|+++ +++.+|..|
T Consensus 214 ~~--g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G 283 (327)
T 1sw6_A 214 MT--GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNG 283 (327)
T ss_dssp ST--TCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--TTTCCCTTS
T ss_pred cc--ccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCC
Confidence 5 899999999987 88999999999999999985 8999988 588999999
Q ss_pred CcHHHHHHHhCccccccCcccccc
Q psy8421 201 NSCLMIAAYKGIDVGRVGPGLFDR 224 (237)
Q Consensus 201 ~t~l~~a~~~~~~~~~~~~~~~~~ 224 (237)
+||||+|+..|.. ++...|++.
T Consensus 284 ~TpLh~A~~~g~~--~~v~~Ll~~ 305 (327)
T 1sw6_A 284 DTCLNIAARLGNI--SIVDALLDY 305 (327)
T ss_dssp CCHHHHHHHHCCH--HHHHHHHHT
T ss_pred CCHHHHHHHcCCH--HHHHHHHHc
Confidence 9999999999965 555555544
No 74
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-31 Score=183.96 Aligned_cols=147 Identities=23% Similarity=0.366 Sum_probs=140.9
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
|+.|++.|+.+++++|++.|.+++ .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.++
T Consensus 6 L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~ 82 (153)
T 1awc_B 6 LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE--GHANI 82 (153)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH--TCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc--ChHHH
Confidence 578899999999999999999876 588899999999999999999999999999999999999999999977 99999
Q ss_pred HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHH
Q psy8421 82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTL 153 (237)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l 153 (237)
+++|++.|++++.++..|.||+|+|+..++.+++++|+++|++++.++..|.||+++|+.. ++.+++++|
T Consensus 83 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~--~~~~i~~~L 152 (153)
T 1awc_B 83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN--GNEDLAEIL 152 (153)
T ss_dssp HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc--CCHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999988 999999887
No 75
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.98 E-value=6.1e-35 Score=213.71 Aligned_cols=179 Identities=20% Similarity=0.182 Sum_probs=163.9
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
|+.|++.|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.++
T Consensus 25 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~--g~~~~ 102 (229)
T 2vge_A 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASC--NDTVI 102 (229)
T ss_dssp HHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc--CCHHH
Confidence 5779999999999999999999999999999999999999999999999999999999999999999999966 99999
Q ss_pred HHHHHHcCCCCccCC-CCCCCHHHHH--HhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCC
Q psy8421 82 IKTLVHAGADVNHST-KTQSTPLRAA--CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158 (237)
Q Consensus 82 ~~~ll~~~~~~~~~~-~~~~~~l~~a--~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~ 158 (237)
+++|++.|++++..+ ..|.||+|+| +..++.+++++|++.|++++..+..+.++++.++.. . ..++|++.|.
T Consensus 103 v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~--~---~~~~ll~~ga 177 (229)
T 2vge_A 103 CMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAE--F---GDELSFREGE 177 (229)
T ss_dssp HHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCS--S---TTBCCBCTTC
T ss_pred HHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhc--c---ccccCccccc
Confidence 999999999999886 6999999999 999999999999999999999999999999866544 2 2367788888
Q ss_pred C--CCCCCCCCCCHHHHHHHcCChhHHHHHH
Q psy8421 159 D--VNHSTKTQSTPLRAACYDGRLDIVKYLI 187 (237)
Q Consensus 159 ~--~~~~~~~~~t~l~~a~~~~~~~~~~~Ll 187 (237)
+ ++.+|..|+||||+|+..|+.++++..+
T Consensus 178 ~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 178 SVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp EEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred cccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 7 6788999999999999999999987644
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=1.9e-30 Score=180.71 Aligned_cols=152 Identities=31% Similarity=0.401 Sum_probs=141.0
Q ss_pred chhhccCCcHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421 2 IAAYKGAGHLSVIKTLVH-AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~-~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 80 (237)
++.|++.|+.++++.|++ .+.+++..+..|.||||+|+..|+.+++++|+++|.+++.++..|.||||+|+.. ++.+
T Consensus 12 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~ 89 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY--GHYE 89 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHH
T ss_pred HHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc--CcHH
Confidence 578899999999999998 4566777888899999999999999999999999999999999999999999966 9999
Q ss_pred HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCC
Q psy8421 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158 (237)
Q Consensus 81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~ 158 (237)
++++|++.|++++..+..|.||+|+|+..++.+++++|+++|++++.++..|.||+++|+ . ++.+++++|+++|+
T Consensus 90 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~--~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 90 VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK--D-GDTDIQDLLRGDAA 164 (165)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSC--T-TCHHHHHHHHTC--
T ss_pred HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHh--c-CChHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999999999975 2 78899999998874
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=2.7e-30 Score=178.27 Aligned_cols=149 Identities=24% Similarity=0.331 Sum_probs=141.6
Q ss_pred chhhccCCcHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~-~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~ 80 (237)
++.|++.|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+.. |+.+
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~ 82 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART--GFLD 82 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHH
T ss_pred HHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc--CcHH
Confidence 5789999999999999998 34889999999999999 999999999999999999999999999999999966 9999
Q ss_pred HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhC
Q psy8421 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA 156 (237)
Q Consensus 81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~ 156 (237)
++++|++.|++++.++..|.||+|+|+..++.+++++|++. .+++..+..|.||+++|+.. ++.+++++|+++
T Consensus 83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~--~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQR--GAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHS--CCHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHc--CcHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999 99999999999999999988 999999999864
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.97 E-value=2.2e-33 Score=207.06 Aligned_cols=200 Identities=17% Similarity=0.173 Sum_probs=144.7
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 81 (237)
|+.|++.|+.++++.|++.|++++. +..|.||||.|+..|+.+++++|++.|++++.++..|.||||+|+.. |+.++
T Consensus 9 L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~--g~~~~ 85 (239)
T 1ycs_B 9 LPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA--GHTEI 85 (239)
T ss_dssp -----------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH--TCHHH
T ss_pred CchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CCHHH
Confidence 5778999999999999999999985 47789999999999999999999999999999999999999999977 99999
Q ss_pred HHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCC-chhHHHHHcCCCCHHHHHHHHhCCCCC
Q psy8421 82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN-SCLMIAAYKGAGHLSVIKTLVHAGADV 160 (237)
Q Consensus 82 ~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~-t~l~~a~~~~~~~~~~~~~l~~~~~~~ 160 (237)
+++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+..+. ||+|+|.....++.+++++|+++|.++
T Consensus 86 v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~ 165 (239)
T 1ycs_B 86 VKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 165 (239)
T ss_dssp HHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999987777 999999333338899999999999887
Q ss_pred CCC---------CCCCCCHHHHHHHcCChhHHHHHHHcCCC------cccccCCCCcHHHH
Q psy8421 161 NHS---------TKTQSTPLRAACYDGRLDIVKYLIEHGAD------LNITNHYNNSCLMI 206 (237)
Q Consensus 161 ~~~---------~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~l~~ 206 (237)
+.. +..+.++.+++...|. +++.+.+.+.+ ....++.|.+|.++
T Consensus 166 ~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~y 224 (239)
T 1ycs_B 166 GIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNL 224 (239)
T ss_dssp TTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGG
T ss_pred cccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHH
Confidence 765 5567888888877765 33334433333 12344445555544
No 79
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.97 E-value=1.1e-29 Score=171.19 Aligned_cols=132 Identities=25% Similarity=0.362 Sum_probs=74.1
Q ss_pred CccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCC-CCc
Q psy8421 56 DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY-NNS 134 (237)
Q Consensus 56 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~-~~t 134 (237)
+++..+..|.||||+|+.. |+.+++++|++.|.+++.++..|.||||+|+. ++.+++++|+++|++++.++.. |.|
T Consensus 4 ~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAAR--GQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR 80 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred CccCCCCCCccHHHHHHHc--CCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence 4444444455555555533 44555555555554444444555555555555 5555555555555555555555 566
Q ss_pred hhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCC
Q psy8421 135 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD 192 (237)
Q Consensus 135 ~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~ 192 (237)
|||+|+.. ++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|+|
T Consensus 81 ~L~~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAARE--GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHH--TCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHc--CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 66666655 556666666666666666666666666666666666666666666553
No 80
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.97 E-value=3.2e-30 Score=177.90 Aligned_cols=138 Identities=23% Similarity=0.288 Sum_probs=64.0
Q ss_pred CCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCc-hhHHHHH
Q psy8421 63 YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS-CLMIAAY 141 (237)
Q Consensus 63 ~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t-~l~~a~~ 141 (237)
.|.||||+|+.. |+.+++++|++.|.+++..+..|.||||+|+ .++.+++++|+++|++++.++..|.| |||+|+.
T Consensus 11 ~~~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~ 87 (156)
T 1bi7_B 11 PSADWLATAAAR--GRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR 87 (156)
T ss_dssp CSTTHHHHHHHH--TCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred cchHHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH
Confidence 344444444433 4444444444444444444444444444442 44444444444444444444545554 5555555
Q ss_pred cCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHH
Q psy8421 142 KGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 205 (237)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~ 205 (237)
. ++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||.+
T Consensus 88 ~--~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 88 E--GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp H--TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred C--CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 5 5555555555555555556666666666666666666666666666666666666666654
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.97 E-value=1e-29 Score=171.39 Aligned_cols=134 Identities=24% Similarity=0.359 Sum_probs=129.0
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCC-C
Q psy8421 21 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKT-Q 99 (237)
Q Consensus 21 ~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~-~ 99 (237)
+++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+ . ++.+++++|++.|++++.++.. |
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~-~~~~~v~~Ll~~g~~~~~~~~~~g 78 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM--M-GSAQVAELLLLHGAEPNCADPATL 78 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTST--T-SCHHHHHHHHHHTCCSSCCBTTTT
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHH--c-CCHHHHHHHHHCCCCCCCcCCCCC
Confidence 5678899999999999999999999999999999999999999999999999 7 9999999999999999999999 9
Q ss_pred CCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCC
Q psy8421 100 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 159 (237)
Q Consensus 100 ~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~ 159 (237)
.||||+|+..++.+++++|+++|++++.++..|.||+|+|+.. ++.+++++|+++|++
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~--~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ--GHRDIARYLHAATGD 136 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHH--TCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999998 999999999998875
No 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.97 E-value=3.2e-30 Score=182.51 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=139.7
Q ss_pred CCcHHHHHHHcCChhHHHHHHHcCCCccccC-cCCCcHHHHHHHhCCCCH----HHHHHHHHcCCCCccCCCCCCCHHHH
Q psy8421 31 QSTPLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIAAYKGAGHL----SVIKTLVHAGADVNHSTKTQSTPLRA 105 (237)
Q Consensus 31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~l~~ 105 (237)
+.++|+.|++.|+.+.++.++..+.+ ..+ ..|.||||+|+.. ++. +++++|++.|++++.++..|.||||+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~--~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~ 81 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRN--NNDEARYKISMFLINKGADIKSRTKEGTTLFFP 81 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTC--SCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHc--CCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 45789999999999999999887643 344 6799999999944 664 58999999999999999999999999
Q ss_pred HHhcCC------HHHHHHHHHcCCCCccccCCCC-chhHHHHHcCC---CCHHHHHHHHh-CCCCCCCCCCCCCCHHHHH
Q psy8421 106 ACYDGR------LDIVKYLIEHGADLNITNHYNN-SCLMIAAYKGA---GHLSVIKTLVH-AGADVNHSTKTQSTPLRAA 174 (237)
Q Consensus 106 a~~~~~------~~~~~~L~~~~~~~~~~~~~~~-t~l~~a~~~~~---~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a 174 (237)
|+..++ .+++++|+++|++++.+|..|. ||+|+|+..+. +..+++++|++ +|++++.+|..|.||||+|
T Consensus 82 a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A 161 (186)
T 3t8k_A 82 LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV 161 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence 998886 6789999999999999999999 99999997421 34579999999 9999999999999999999
Q ss_pred HHcCChhHHHHHHHcCCCccccc
Q psy8421 175 CYDGRLDIVKYLIEHGADLNITN 197 (237)
Q Consensus 175 ~~~~~~~~~~~Ll~~g~~~~~~~ 197 (237)
+..++.+++++|.+...+.+.++
T Consensus 162 ~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 162 KRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp HTTTCHHHHHHHHHHHHHHTCCC
T ss_pred HHcCCHHHHHHHHHHHHHHhccc
Confidence 99999999999998765555544
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.96 E-value=6.5e-30 Score=176.38 Aligned_cols=145 Identities=25% Similarity=0.330 Sum_probs=120.1
Q ss_pred CCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCC-HH
Q psy8421 25 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST-PL 103 (237)
Q Consensus 25 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~l 103 (237)
...+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ . ++.+++++|++.|++++.++..|.| ||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~--~~~~~v~~Ll~~g~~~~~~d~~g~ttpL 82 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M--GSARVAELLLLHGAEPNCADPATLTRPV 82 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T--TCHHHHHHHHTTTCCCCCCCTTTCCCHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-c--CCHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 345778999999999999999999999999999999999999999984 3 8999999999999999999999999 99
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q psy8421 104 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA 174 (237)
Q Consensus 104 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a 174 (237)
|+|+..++.+++++|+++|++++.++..|.||+|+|+.. ++.+++++|+++|++++.++..|.||.+.+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL--GHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH--TCHHHHHHHSSCC-----------------
T ss_pred HHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHh--CHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 999999999999999999999999999999999999998 999999999999999999999999987643
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.96 E-value=1.5e-29 Score=179.01 Aligned_cols=158 Identities=16% Similarity=0.164 Sum_probs=137.4
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCh----hHHHHHHHcCCCccccCcCCCcHHHHHHHhCC
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAACYDGRL----DIVKYLIEHGADLNITNHYNNSCLMIAAYKGA 76 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~-~~~~t~l~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~ 76 (237)
|+.|++.|+++.++.++..+.+ ..+ ..|.||||+|+..|+. +++++|+++|++++.++..|.||||+|+..+.
T Consensus 10 l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~ 87 (186)
T 3t8k_A 10 VSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG 87 (186)
T ss_dssp HHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 5678999999999999987743 344 6799999999999975 59999999999999999999999999997732
Q ss_pred CC----HHHHHHHHHcCCCCccCCCCCC-CHHHHHHhcC-----CHHHHHHHHH-cCCCCccccCCCCchhHHHHHcCCC
Q psy8421 77 GH----LSVIKTLVHAGADVNHSTKTQS-TPLRAACYDG-----RLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGAG 145 (237)
Q Consensus 77 ~~----~~~~~~ll~~~~~~~~~~~~~~-~~l~~a~~~~-----~~~~~~~L~~-~~~~~~~~~~~~~t~l~~a~~~~~~ 145 (237)
.. .+++++|++.|++++.++..|. ||||+|+..+ ..+++++|++ +|++++.++..|.||+|+|+.. +
T Consensus 88 ~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~--~ 165 (186)
T 3t8k_A 88 NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC--Q 165 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTT--T
T ss_pred cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHc--C
Confidence 21 6899999999999999999999 9999999954 3569999999 9999999999999999999977 9
Q ss_pred CHHHHHHHHhCCCCCCCC
Q psy8421 146 HLSVIKTLVHAGADVNHS 163 (237)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~ 163 (237)
+.+++++|.++....+.+
T Consensus 166 ~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 166 KPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp CHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 999999998765444443
No 85
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=2.7e-31 Score=206.82 Aligned_cols=145 Identities=17% Similarity=0.131 Sum_probs=99.3
Q ss_pred chhhccCCcHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCc---cccCcCCCcHHHHHHHhC
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADV---NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL---NITNHYNNSCLMIAAYKG 75 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~---~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~~~~l~~a~~~~ 75 (237)
|+.|++.|+.+++++|++.|+.. +..+..|.||||+|+..|+.++|++|+++|+++ +..+.. .||||+|+..
T Consensus 96 Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~- 173 (376)
T 2aja_A 96 CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAEN- 173 (376)
T ss_dssp HHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHT-
T ss_pred HHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHC-
Confidence 46677778888888888777632 233445667888888888888888888877652 222222 7788888854
Q ss_pred CCCHHHHHHHHHcCCCCcc--CCCCCCCHHHHHH-hcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHH
Q psy8421 76 AGHLSVIKTLVHAGADVNH--STKTQSTPLRAAC-YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152 (237)
Q Consensus 76 ~~~~~~~~~ll~~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~ 152 (237)
|+.+++++|+++|++++. .+..|.||||+|+ ..|+.+++++|++.|. .+.||+++|+.. |+.+++++
T Consensus 174 -G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~--g~~evv~l 243 (376)
T 2aja_A 174 -GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEY--GEKYVNPF 243 (376)
T ss_dssp -TCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTT--TTTTHHHH
T ss_pred -CCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHC--CCHHHHHH
Confidence 788888888887777665 6666778888888 8888888888877552 266777777766 77777777
Q ss_pred HHhCCC
Q psy8421 153 LVHAGA 158 (237)
Q Consensus 153 l~~~~~ 158 (237)
|+++|.
T Consensus 244 L~~~ga 249 (376)
T 2aja_A 244 IARHVN 249 (376)
T ss_dssp HHHHHH
T ss_pred HHhcCc
Confidence 776554
No 86
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.95 E-value=3.3e-27 Score=156.81 Aligned_cols=125 Identities=46% Similarity=0.677 Sum_probs=68.1
Q ss_pred CCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcC
Q psy8421 31 QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG 110 (237)
Q Consensus 31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~ 110 (237)
|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+.. ++.+++++|++.|.+++.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~---------------- 63 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--GHLEVVKLLLEAGADVNA---------------- 63 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCTTC----------------
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc--CcHHHHHHHHHcCCCCcc----------------
Confidence 45555555555555555555555555555555555555555543 555555555555544444
Q ss_pred CHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcC
Q psy8421 111 RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG 190 (237)
Q Consensus 111 ~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g 190 (237)
++..|.||+|+|+.. ++.+++++|+++|.+++.++..|.||+++|+..++.+++++|+++|
T Consensus 64 -----------------~~~~g~t~l~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 124 (126)
T 1n0r_A 64 -----------------KDKNGRTPLHLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124 (126)
T ss_dssp -----------------CCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred -----------------cCCCCCcHHHHHHHc--ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 444455555555544 4555555555555555555555555555555555555555555555
Q ss_pred CC
Q psy8421 191 AD 192 (237)
Q Consensus 191 ~~ 192 (237)
++
T Consensus 125 ad 126 (126)
T 1n0r_A 125 AY 126 (126)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.95 E-value=3.8e-27 Score=156.52 Aligned_cols=114 Identities=42% Similarity=0.623 Sum_probs=108.2
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q psy8421 98 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD 177 (237)
Q Consensus 98 ~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~ 177 (237)
+|.||||.|+..++.+++++|+++|.+++..+..|.||+|+|+.. ++.+++++|+++|.+++.++..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc--CcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Confidence 478999999999999999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred CChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421 178 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID 213 (237)
Q Consensus 178 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~ 213 (237)
++.+++++|+++|++++.+|..|.||+++|+..+..
T Consensus 79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 114 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 114 (126)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcH
Confidence 999999999999999999999999999999998854
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.95 E-value=1.8e-27 Score=160.40 Aligned_cols=123 Identities=31% Similarity=0.505 Sum_probs=71.7
Q ss_pred CCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhc
Q psy8421 30 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD 109 (237)
Q Consensus 30 ~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~ 109 (237)
.+.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+.. ++.+++++|++.|++++..+..|.||||+|+..
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH--GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 455666666666666666666666666666666666666666644 566666666666665555555555555555555
Q ss_pred CCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhC
Q psy8421 110 GRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA 156 (237)
Q Consensus 110 ~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~ 156 (237)
++.+++++|+++|++++..+..|.||+++|+.. ++.+++++|+++
T Consensus 91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~--~~~~~~~~Ll~~ 135 (136)
T 2jab_A 91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN--GNEDLAEILQKL 135 (136)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHC
T ss_pred CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHC--CCHHHHHHHHHc
Confidence 555555555555555555555555555555544 555555555544
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.95 E-value=6.2e-27 Score=157.69 Aligned_cols=126 Identities=32% Similarity=0.423 Sum_probs=115.3
Q ss_pred CcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHH
Q psy8421 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 140 (237)
Q Consensus 61 ~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~ 140 (237)
...+.||||+|+.. |+.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+
T Consensus 11 ~~~~~t~l~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 11 GSDLGKKLLEAARA--GQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp -CHHHHHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred cccccHHHHHHHHh--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 44578999999976 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcC
Q psy8421 141 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG 190 (237)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g 190 (237)
.. ++.+++++|+++|++++.++..|.||||+|+..++.+++++|++.|
T Consensus 89 ~~--~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FI--GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred Hc--CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 88 9999999999999999999999999999999999999999998875
No 90
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=9e-31 Score=203.86 Aligned_cols=181 Identities=17% Similarity=0.143 Sum_probs=147.7
Q ss_pred CCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCc---cccCcCCCcHHHHHHHhCCCCHHHHHH
Q psy8421 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL---NITNHYNNSCLMIAAYKGAGHLSVIKT 84 (237)
Q Consensus 8 ~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~~~ 84 (237)
.++.++++++++.|.+ +.||||+|+..|+.+++++|+++|... +..+..+.||||+|+.. |+.+++++
T Consensus 76 ~~~~~~~~~l~~~g~~-------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~--G~~eiv~~ 146 (376)
T 2aja_A 76 RNAKQLWSDAHKKGIK-------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN--GHLHVLNR 146 (376)
T ss_dssp TTCTTHHHHHHHHTCC-------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT--TCHHHHHH
T ss_pred CCCHHHHHHHHHcCCC-------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc--CCHHHHHH
Confidence 5677777777777654 359999999999999999999998732 23445678999999966 99999999
Q ss_pred HHHcCCCC---ccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCcc--ccCCCCchhHHHH-HcCCCCHHHHHHHHhCCC
Q psy8421 85 LVHAGADV---NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI--TNHYNNSCLMIAA-YKGAGHLSVIKTLVHAGA 158 (237)
Q Consensus 85 ll~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~--~~~~~~t~l~~a~-~~~~~~~~~~~~l~~~~~ 158 (237)
|++.|+++ +..+.. .||||+|+..|+.+++++|+++|++++. .+..|.||||+|+ .. |+.+++++|++.|.
T Consensus 147 Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~--G~~eiv~~Ll~~ga 223 (376)
T 2aja_A 147 LCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR--GHHNVINFLLDCPV 223 (376)
T ss_dssp HHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT--CCHHHHHHHTTSHH
T ss_pred HHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHC--CCHHHHHHHHhCCC
Confidence 99999752 222233 8999999999999999999999999877 7888999999999 98 99999999998764
Q ss_pred CCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhC
Q psy8421 159 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211 (237)
Q Consensus 159 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~ 211 (237)
.+.||+|.|+..|+.+++++|+++|++++..+. +++.|+..|
T Consensus 224 -------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~----~l~~A~~~g 265 (376)
T 2aja_A 224 -------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD----AFKLSNPDG 265 (376)
T ss_dssp -------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHT----TTTTTSSSS
T ss_pred -------ccchHHHHHHHCCCHHHHHHHHhcCcccccccH----HHHHHHHCC
Confidence 388999999999999999999999988876542 444454444
No 91
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.95 E-value=6e-29 Score=176.00 Aligned_cols=164 Identities=20% Similarity=0.237 Sum_probs=140.0
Q ss_pred hhccCCcHHHHHHHHHcCCCCCC-----------CCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHH
Q psy8421 4 AYKGAGHLSVIKTLVHAGADVNH-----------STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 72 (237)
Q Consensus 4 ~a~~~g~~~~~~~L~~~~~~~~~-----------~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~ 72 (237)
.|++.|..+++++|++.+..... .+..|.||||+|+..|+.+++++|++ |.+++..+..|.||||+|+
T Consensus 6 ~aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~ 84 (183)
T 3deo_A 6 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVA 84 (183)
T ss_dssp EEEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHH
T ss_pred HHHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHH
Confidence 34556666677777754322211 13468899999999999999999999 9999999999999999999
Q ss_pred HhCCCCHHHHHHHHHcCCCCccCC-CCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHH
Q psy8421 73 YKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 151 (237)
Q Consensus 73 ~~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~ 151 (237)
.. |+.+++++|+++|++++..+ ..|.||||+|+..++.+++++|+++|++++.++..|.||+|+|+.. ++
T Consensus 85 ~~--~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~--~~----- 155 (183)
T 3deo_A 85 GL--GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI--LK----- 155 (183)
T ss_dssp HH--TCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH--HH-----
T ss_pred Hc--CCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh--cc-----
Confidence 77 99999999999999999888 8899999999999999999999999999999999999999999965 21
Q ss_pred HHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421 152 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189 (237)
Q Consensus 152 ~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~ 189 (237)
...+.+++++|+..|..+++++|.++
T Consensus 156 ------------~~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 156 ------------TTPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp ------------TCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ------------CcccccHHHHHHHcCHHHHHHHHHHh
Confidence 13467899999999999999999764
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.95 E-value=1.3e-27 Score=161.25 Aligned_cols=131 Identities=28% Similarity=0.379 Sum_probs=101.6
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCC
Q psy8421 21 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS 100 (237)
Q Consensus 21 ~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 100 (237)
|+++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. ++.+++++|++.|++++.++..|.
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~g~ 77 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH--GHLKVVELLLQHKALVNTTGYQND 77 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCGGGC
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCcccCcCCCCC
Confidence 4556 5677888888888888888888888888888888888888888888855 888888888888888888888888
Q ss_pred CHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhC
Q psy8421 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA 156 (237)
Q Consensus 101 ~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~ 156 (237)
||+|+|+..++.+++++|+++|++++.++..|.||+++|+.. +..++++++.+.
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~--~~~~~l~~l~~~ 131 (137)
T 3c5r_A 78 SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE--SMKSLLLLPEKN 131 (137)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCH--HHHHHHSCC---
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhc--cHHHHHhhcccc
Confidence 888888888888888888888888887888888888887755 666666655544
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.94 E-value=3.4e-27 Score=159.22 Aligned_cols=125 Identities=30% Similarity=0.404 Sum_probs=67.3
Q ss_pred ccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHH
Q psy8421 59 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138 (237)
Q Consensus 59 ~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~ 138 (237)
.++..|.||||+|+.. |+.+++++|++.|.+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+
T Consensus 5 ~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIK--GDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHH--TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHH
Confidence 3455555555555544 55555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHH
Q psy8421 139 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187 (237)
Q Consensus 139 a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll 187 (237)
|+.. ++.+++++|+++|++++.++..|.||+++|+..+..+++++|.
T Consensus 83 A~~~--~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~ 129 (137)
T 3c5r_A 83 AAKN--GHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129 (137)
T ss_dssp HHHT--TCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred HHHc--CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence 5544 5555555555555555555555555555555554444444443
No 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.94 E-value=1.2e-26 Score=171.49 Aligned_cols=142 Identities=22% Similarity=0.281 Sum_probs=131.2
Q ss_pred CCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCC-CCCCCHHHHHH
Q psy8421 29 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAAC 107 (237)
Q Consensus 29 ~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~l~~a~ 107 (237)
..|.||||+|+..|+.+++++|++ |.+++.++..|.||||+|+.. |+.+++++|+++|++++..+ ..|.||||+|+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL--GSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHH--TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHC--CCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 468899999999999999999999 999999999999999999977 99999999999999999888 78999999999
Q ss_pred hcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHH
Q psy8421 108 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187 (237)
Q Consensus 108 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll 187 (237)
..|+.+++++|+++|++++.++..|.||+|+|+.. . ....+.|||++|+..|+.+++++|+
T Consensus 120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~--~-----------------~~~~~~~~l~~a~~~g~~~iv~~L~ 180 (244)
T 3ui2_A 120 GYVRPEVVEALVELGADIEVEDERGLTALELAREI--L-----------------KTTPKGNPMQFGRRIGLEKVINVLE 180 (244)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH--H-----------------TTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH--H-----------------hccCCCCHHHHHHHcChHHHHHHHH
Confidence 99999999999999999999999999999999864 1 2256789999999999999999999
Q ss_pred HcCCC
Q psy8421 188 EHGAD 192 (237)
Q Consensus 188 ~~g~~ 192 (237)
+++.+
T Consensus 181 ~~~~~ 185 (244)
T 3ui2_A 181 GQVFE 185 (244)
T ss_dssp HHHEE
T ss_pred Hhccc
Confidence 87544
No 95
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.93 E-value=5.1e-26 Score=172.76 Aligned_cols=140 Identities=19% Similarity=0.160 Sum_probs=124.0
Q ss_pred CCcHHHHHHHhCCCCHHHHHHHHHcCCCCcc------CCCCCCCHHHHHHhc---CCHHHHHHHHHcCCCCccccCCCCc
Q psy8421 64 NNSCLMIAAYKGAGHLSVIKTLVHAGADVNH------STKTQSTPLRAACYD---GRLDIVKYLIEHGADLNITNHYNNS 134 (237)
Q Consensus 64 ~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~------~~~~~~~~l~~a~~~---~~~~~~~~L~~~~~~~~~~~~~~~t 134 (237)
..++|+.|+.. ++.+.++.|++.|.+++. .+..|.||||+|+.. ++.+++++|+++|++++..+..|.|
T Consensus 151 ~~~~L~~A~~~--g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~T 228 (301)
T 2b0o_E 151 EPQRLWTAICN--RDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT 228 (301)
T ss_dssp CHHHHHHHHHT--TCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCC
T ss_pred hHHHHhhhhhc--cCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCC
Confidence 45679999965 999999999999999887 588999999999997 8999999999999999999999999
Q ss_pred hhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCCCcHHHHHHHhCcc
Q psy8421 135 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID 213 (237)
Q Consensus 135 ~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~ 213 (237)
|||+|+.. ++.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++ .|.||||+|+..|+.
T Consensus 229 pLh~A~~~--g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 229 ALHYAALY--NQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHHT--TCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 99999988 999999999999999999999999999999999999999999999876 489999999998864
No 96
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.93 E-value=1.9e-25 Score=169.56 Aligned_cols=142 Identities=20% Similarity=0.183 Sum_probs=124.9
Q ss_pred CCcHHHHHHHcCChhHHHHHHHcCCCccc------cCcCCCcHHHHHHHhC-CCCHHHHHHHHHcCCCCccCCCCCCCHH
Q psy8421 31 QSTPLRAACYDGRLDIVKYLIEHGADLNI------TNHYNNSCLMIAAYKG-AGHLSVIKTLVHAGADVNHSTKTQSTPL 103 (237)
Q Consensus 31 ~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~------~~~~~~~~l~~a~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~~~l 103 (237)
..++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+..+ .++.+++++|+++|++++..+..|.|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 44679999999999999999999999987 6889999999999642 2789999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCh
Q psy8421 104 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180 (237)
Q Consensus 104 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~ 180 (237)
|+|+..|+.+++++|+++|++++.+|..|.|||++|+.. ++.+++++|+++|.+ .|.||||+|+..|+.
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~--~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK--HHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHH--TCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 999999999999999999999999999999999999998 999999999998876 478999999988763
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.93 E-value=2.5e-25 Score=147.17 Aligned_cols=110 Identities=30% Similarity=0.383 Sum_probs=90.3
Q ss_pred CCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q psy8421 97 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY 176 (237)
Q Consensus 97 ~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~ 176 (237)
..+.+|||.|+..++.+++++|++.|.+++..+..|.||||+|+.. ++.+++++|+++|++++.+|..|.||||+|+.
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC--GQLEILEFLLLKGADINAPDKHHITPLLSAVY 82 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHT--TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 4566788888888888888888888888888888888888888877 88888888888888888888888888888888
Q ss_pred cCChhHHHHHHHcCCCcccccCCCCcHHHHHH
Q psy8421 177 DGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 208 (237)
Q Consensus 177 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~ 208 (237)
.++.+++++|+++|++++.+|..|.||+|+|.
T Consensus 83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 88888888888888888888888888888884
No 98
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.93 E-value=1.5e-25 Score=148.28 Aligned_cols=111 Identities=30% Similarity=0.377 Sum_probs=81.9
Q ss_pred CCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHH
Q psy8421 28 TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 107 (237)
Q Consensus 28 ~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~ 107 (237)
+..|.||||+|+..|+.+++++|+++|.+++..+..|.||||+|+.. ++.+++++|++.|++++.++..|.||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC--GQLEILEFLLLKGADINAPDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHT--TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 34566778888888888888887777777777777777777777754 7777777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHcCCCCccccCCCCchhHHHH
Q psy8421 108 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 140 (237)
Q Consensus 108 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~ 140 (237)
..++.+++++|+++|++++.++..|.||+++|.
T Consensus 82 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 777777777777777777777777777777664
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.93 E-value=7.4e-26 Score=164.93 Aligned_cols=136 Identities=25% Similarity=0.298 Sum_probs=105.4
Q ss_pred CcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHc-CCCCccccCCCCchhHHH
Q psy8421 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIA 139 (237)
Q Consensus 61 ~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~a 139 (237)
+..|.||||+|+.. |+.+++++|++.|.+++..+..|.||||+|+..++.+++++|++. |++++..+..|.||||+|
T Consensus 70 ~~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 70 AESIDNPLHEAAKR--GNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147 (222)
T ss_dssp EEEESCHHHHHHHH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred cccccccccccccc--CcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence 45678889988866 888888888888888888888888899999888888999988888 888888888889999999
Q ss_pred HHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCcccccCCC
Q psy8421 140 AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN 200 (237)
Q Consensus 140 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g 200 (237)
+.. ++.+++++|+++|++++.++..|.||+++|+..+..++++.|++.|+.....+..|
T Consensus 148 ~~~--~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 148 AWK--GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHH--TCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred HHc--CCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 988 88899999999999998889999999999998888999999988888887776544
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.93 E-value=6.9e-26 Score=165.07 Aligned_cols=136 Identities=22% Similarity=0.314 Sum_probs=114.9
Q ss_pred CCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHc-CCCCccCCCCCCCHHHHH
Q psy8421 28 TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAA 106 (237)
Q Consensus 28 ~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a 106 (237)
+..|.||||+|+..|+.+++++|++.|.+++.++..|.||||+|+.. |+.+++++|++. |++++..+..|.||||+|
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG--GHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHc--CCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence 44678999999999999999999999999999999999999999966 999999999998 999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCC
Q psy8421 107 CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ 167 (237)
Q Consensus 107 ~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 167 (237)
+..|+.+++++|+++|++++.++..|.||+++|+.. +..++++.+++.+......+..+
T Consensus 148 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~--~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNA--ACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSH--HHHHHHC----------------
T ss_pred HHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcch--hHHHHHHHHhccchhhhccchhh
Confidence 999999999999999999999999999999999977 99999999999998776665543
No 101
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.92 E-value=1.3e-24 Score=153.63 Aligned_cols=133 Identities=22% Similarity=0.156 Sum_probs=122.3
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccC-cCCCcHHHHHHHhCCCCHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIAAYKGAGHLS 80 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~ 80 (237)
++.|++.|+.++++.|++ |.+++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.. ++.+
T Consensus 48 L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~--~~~~ 124 (183)
T 3deo_A 48 WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY--VRPE 124 (183)
T ss_dssp HHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT--TCHH
T ss_pred HHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc--CcHH
Confidence 578999999999999999 99999999999999999999999999999999999999888 8899999999966 9999
Q ss_pred HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhC
Q psy8421 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA 156 (237)
Q Consensus 81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~ 156 (237)
++++|+++|++++.++..|.||+|+|+..++. ..+.+++++++.. +..+++++|.++
T Consensus 125 ~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~--~~~~i~~~L~~~ 181 (183)
T 3deo_A 125 VVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRI--GLEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHH--HHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHc--CHHHHHHHHHHh
Confidence 99999999999999999999999999874432 3567899999988 999999999764
No 102
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=1.8e-24 Score=159.79 Aligned_cols=135 Identities=21% Similarity=0.144 Sum_probs=124.0
Q ss_pred chhhccCCcHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccC-cCCCcHHHHHHHhCCCCHH
Q psy8421 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN-HYNNSCLMIAAYKGAGHLS 80 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~ 80 (237)
|+.|++.|+.++++.|++ |.+++..+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+.. |+.+
T Consensus 49 L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~--g~~~ 125 (244)
T 3ui2_A 49 WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY--VRPE 125 (244)
T ss_dssp HHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT--TCHH
T ss_pred HHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc--CCHH
Confidence 578999999999999999 99999999999999999999999999999999999999988 7899999999966 9999
Q ss_pred HHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCC
Q psy8421 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158 (237)
Q Consensus 81 ~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~ 158 (237)
++++|+++|++++.++..|.||+|+|+..+. ...+.+|+++|+.. ++.+++++|.+++.
T Consensus 126 ~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~--g~~~iv~~L~~~~~ 184 (244)
T 3ui2_A 126 VVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRI--GLEKVINVLEGQVF 184 (244)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHH--HHHHHHHHHHHHHE
T ss_pred HHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHc--ChHHHHHHHHHhcc
Confidence 9999999999999999999999999986322 24678999999988 99999999998643
No 103
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.91 E-value=8.5e-24 Score=164.08 Aligned_cols=163 Identities=23% Similarity=0.219 Sum_probs=112.0
Q ss_pred CCCCCcHHHHHHHc-CChhHHHHHHHcCCCccccC--cCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHH
Q psy8421 28 TKTQSTPLRAACYD-GRLDIVKYLIEHGADLNITN--HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLR 104 (237)
Q Consensus 28 ~~~~~t~l~~A~~~-g~~~~v~~Ll~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~ 104 (237)
...+.|+||.|+.. |+.+++++|+++|++++..+ ..|.||||+|+.. ++.+++++|+++|++++..+..|.||||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~--g~~~iv~~LL~~Gadvn~~d~~G~TpLh 273 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA--NSLLACEFLLQNGANVNQADSAGRGPLH 273 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHC--CCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 44567899999999 99999999999999998887 7889999999965 8999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCC---CCCCCCCCCCCHHHHHHHcCC--
Q psy8421 105 AACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA---DVNHSTKTQSTPLRAACYDGR-- 179 (237)
Q Consensus 105 ~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~t~l~~a~~~~~-- 179 (237)
+|+..++.+++++|+++|++++..+..|.||||+|+.. ++.+++++|+..+. +....+..+.|+++++.....
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~--g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~~ 351 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET--ANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMA 351 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHHHC--------------------------
T ss_pred HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHC--CCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999987 89999999987653 333455667788877765542
Q ss_pred hhHHHHHHHcCCCcc
Q psy8421 180 LDIVKYLIEHGADLN 194 (237)
Q Consensus 180 ~~~~~~Ll~~g~~~~ 194 (237)
.+-.+.|...+.+++
T Consensus 352 ~~~~ekl~r~~~~~~ 366 (368)
T 3jue_A 352 SDDPEKLSRRSHDLH 366 (368)
T ss_dssp ---------------
T ss_pred CCCHHHHHhcCCCcC
Confidence 334455655555543
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.91 E-value=8.6e-24 Score=164.07 Aligned_cols=148 Identities=24% Similarity=0.262 Sum_probs=118.9
Q ss_pred cCCCcHHHHHHHhCC-CCHHHHHHHHHcCCCCccCC--CCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHH
Q psy8421 62 HYNNSCLMIAAYKGA-GHLSVIKTLVHAGADVNHST--KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138 (237)
Q Consensus 62 ~~~~~~l~~a~~~~~-~~~~~~~~ll~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~ 138 (237)
..+.|+||.|+ .. ++.++++.|++.|++++..+ ..|.||||+|+..++.+++++|+++|++++..+..|.||||+
T Consensus 197 ~~~~t~L~~Aa--~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~ 274 (368)
T 3jue_A 197 LHPGALLFRAS--GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH 274 (368)
T ss_dssp CCHHHHHHHHT--SSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCCCcHHHHHH--HccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 34568999999 77 99999999999999999888 889999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcC---CCcccccCCCCcHHHHHHHhCcc
Q psy8421 139 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG---ADLNITNHYNNSCLMIAAYKGID 213 (237)
Q Consensus 139 a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~l~~a~~~~~~ 213 (237)
|+.. ++.+++++|+++|++++.+|..|.||||+|+..++.+++++|+..+ .+....+..+.|+++++......
T Consensus 275 A~~~--g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~ 350 (368)
T 3jue_A 275 ATIL--GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLM 350 (368)
T ss_dssp HHHH--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------------
T ss_pred HHHc--CcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhh
Confidence 9998 9999999999999999999999999999999999999999999875 44455667788999988876543
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.91 E-value=1.4e-23 Score=169.94 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=107.6
Q ss_pred CcHHHHHHHhCCCCHHHHHHHHHcCCCCccC------CCCCCCHHHHHHh---cCCHHHHHHHHHcCCCCccccCCCCch
Q psy8421 65 NSCLMIAAYKGAGHLSVIKTLVHAGADVNHS------TKTQSTPLRAACY---DGRLDIVKYLIEHGADLNITNHYNNSC 135 (237)
Q Consensus 65 ~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~------~~~~~~~l~~a~~---~~~~~~~~~L~~~~~~~~~~~~~~~t~ 135 (237)
.+.|+.|+.. |+.++++.|++.|++++.. +..|.||||+|+. .|+.+++++|+++|++++..|..|.||
T Consensus 133 ~~~L~~A~~~--g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~Tp 210 (497)
T 3lvq_E 133 PQRLWTAICN--RDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 210 (497)
T ss_dssp HHHHHHHHHH--TCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCH
T ss_pred HHHHHHHHhc--cCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcH
Confidence 3678888866 8889999999888888766 7788899999966 888899999999999998888889999
Q ss_pred hHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCCccccc
Q psy8421 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 197 (237)
Q Consensus 136 l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~ 197 (237)
||+|+.. ++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++...
T Consensus 211 Lh~A~~~--g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~ 270 (497)
T 3lvq_E 211 LHYAALY--NQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFP 270 (497)
T ss_dssp HHHHTTT--TCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------
T ss_pred HHHHHHc--CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCc
Confidence 9999977 88999999999999999899999999999999999999999999998887743
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.91 E-value=1.9e-22 Score=151.45 Aligned_cols=172 Identities=15% Similarity=0.120 Sum_probs=112.9
Q ss_pred HHHcCCCCCC-----CCCCCCcHHHHHHHcCChhHHHHHHHcCCCcc-----c--------------------------c
Q psy8421 17 LVHAGADVNH-----STKTQSTPLRAACYDGRLDIVKYLIEHGADLN-----I--------------------------T 60 (237)
Q Consensus 17 L~~~~~~~~~-----~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~-----~--------------------------~ 60 (237)
-.+.|..+.. .|.++.++++.+...|+..+.+++...-.... . .
T Consensus 47 hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~ 126 (278)
T 1dcq_A 47 HRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHAD 126 (278)
T ss_dssp HHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSS
T ss_pred HhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccc
Confidence 3344555543 56778888888888888666655542211110 0 0
Q ss_pred CcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCC------ccCCCCCCCHHHHHHhc---CCHHHHHHHHHcCCCCccccCC
Q psy8421 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV------NHSTKTQSTPLRAACYD---GRLDIVKYLIEHGADLNITNHY 131 (237)
Q Consensus 61 ~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~------~~~~~~~~~~l~~a~~~---~~~~~~~~L~~~~~~~~~~~~~ 131 (237)
.....++|+.|+.. ++.+.+..++..|.++ +..+..|.||||+|+.. ++.+++++|+++|++++..|..
T Consensus 127 ~~~~l~~l~~a~~~--~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~ 204 (278)
T 1dcq_A 127 TAAKLHSLCEAVKT--RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK 204 (278)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTT
T ss_pred cchhhhhhhhHhhh--cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCC
Confidence 01123566777743 6777777777777663 33356677777777776 6777777777777777777777
Q ss_pred CCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHHcCCC
Q psy8421 132 NNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD 192 (237)
Q Consensus 132 ~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~ 192 (237)
|.||||+|+.. ++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 205 g~TpLh~A~~~--g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 205 GSTALHYCCLT--DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp CCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHc--CCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 77777777766 777777777777777777777777777777777777777777777654
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.91 E-value=1.2e-23 Score=170.32 Aligned_cols=122 Identities=19% Similarity=0.180 Sum_probs=64.1
Q ss_pred hhhccCCcHHHHHHHHHcCCCCCCC------CCCCCcHHHHHHH---cCChhHHHHHHHcCCCccccCcCCCcHHHHHHH
Q psy8421 3 AAYKGAGHLSVIKTLVHAGADVNHS------TKTQSTPLRAACY---DGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY 73 (237)
Q Consensus 3 ~~a~~~g~~~~~~~L~~~~~~~~~~------~~~~~t~l~~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~ 73 (237)
+.|+..|++++++.|++.|++++.. +..|.||||+|+. .|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 137 ~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~ 216 (497)
T 3lvq_E 137 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 216 (497)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTT
T ss_pred HHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHH
Confidence 3455555555555555555555444 4455555555543 455555555555555555555555555555552
Q ss_pred hCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCc
Q psy8421 74 KGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126 (237)
Q Consensus 74 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~ 126 (237)
.|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 217 --~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 217 --YNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF 267 (497)
T ss_dssp --TTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---
T ss_pred --cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 255555555555555555555555555555555555555555555555443
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.90 E-value=4.8e-23 Score=129.35 Aligned_cols=93 Identities=45% Similarity=0.683 Sum_probs=82.6
Q ss_pred CCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhc
Q psy8421 30 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD 109 (237)
Q Consensus 30 ~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~ 109 (237)
+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. ++.+++++|++.|++++.++..|.||+|+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 478999999999999999999999999999999999999999965 899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCC
Q psy8421 110 GRLDIVKYLIEHGAD 124 (237)
Q Consensus 110 ~~~~~~~~L~~~~~~ 124 (237)
++.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 79 GHLEVVKLLLEAGAY 93 (93)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 999999999988763
No 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.90 E-value=4.7e-23 Score=154.77 Aligned_cols=130 Identities=21% Similarity=0.220 Sum_probs=101.3
Q ss_pred CCCCCcHHHHHHHcCChhHHHHHHHcCCCcc------ccCcCCCcHHHHHHHhCC-CCHHHHHHHHHcCCCCccCCCCCC
Q psy8421 28 TKTQSTPLRAACYDGRLDIVKYLIEHGADLN------ITNHYNNSCLMIAAYKGA-GHLSVIKTLVHAGADVNHSTKTQS 100 (237)
Q Consensus 28 ~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~------~~~~~~~~~l~~a~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~ 100 (237)
+....++|+.|+..|+.+.++.+++.|.+++ ..+..|.||||+|+..+. ++.+++++|+++|++++.++..|.
T Consensus 127 ~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~ 206 (278)
T 1dcq_A 127 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS 206 (278)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCC
T ss_pred cchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCC
Confidence 3344567888888888888888888877743 346778888888885422 678888888888888888888888
Q ss_pred CHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCC
Q psy8421 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 159 (237)
Q Consensus 101 ~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~ 159 (237)
||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. ++.+++++|+++|.+
T Consensus 207 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~--~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL--KHEHCEELLTQALSG 263 (278)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHHHTT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc--CCHHHHHHHHHcCCC
Confidence 888888888888888888888888888888888888888877 788888888887764
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.90 E-value=2.1e-23 Score=136.20 Aligned_cols=109 Identities=36% Similarity=0.477 Sum_probs=97.7
Q ss_pred cCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q psy8421 94 HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA 173 (237)
Q Consensus 94 ~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~ 173 (237)
.++..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+.. ++.+++++|+++|++++.++..|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~--~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN--GHAEIVKLLLAKGADVNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTT--TCHHHHHHHTTTTCCTTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc--CcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 3567888999999999999999999999999988899999999999977 89999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHcCCCcccccCCCCcHH
Q psy8421 174 ACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204 (237)
Q Consensus 174 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l 204 (237)
|+..++.+++++|+++|++++.++..|.||-
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 9999999999999999999999999999885
No 111
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.1e-22 Score=127.61 Aligned_cols=92 Identities=46% Similarity=0.688 Sum_probs=76.0
Q ss_pred CCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q psy8421 99 QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG 178 (237)
Q Consensus 99 ~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~ 178 (237)
|.||||+|+..++.+++++|++.|++++.++..|.||||+|+.. ++.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 67788888888888888888888888888888888888888877 8888888888888888888888888888888888
Q ss_pred ChhHHHHHHHcCCC
Q psy8421 179 RLDIVKYLIEHGAD 192 (237)
Q Consensus 179 ~~~~~~~Ll~~g~~ 192 (237)
+.+++++|+++|++
T Consensus 80 ~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 80 HLEVVKLLLEAGAY 93 (93)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 88888888888764
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.89 E-value=5.4e-23 Score=134.30 Aligned_cols=109 Identities=36% Similarity=0.474 Sum_probs=92.0
Q ss_pred CCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHH
Q psy8421 26 HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA 105 (237)
Q Consensus 26 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~ 105 (237)
..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+. .++.+++++|++.|++++.++..|.||+|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~--~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAK--NGHAEIVKLLLAKGADVNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHT--TTCHHHHHHHTTTTCCTTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH--cCcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 467788899999999999999999998888888888888999999984 488899999998888888888888889999
Q ss_pred HHhcCCHHHHHHHHHcCCCCccccCCCCchh
Q psy8421 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136 (237)
Q Consensus 106 a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l 136 (237)
|+..++.+++++|+++|++++..+..+.+|-
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 8888888888888888888888877777663
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.81 E-value=1.3e-19 Score=117.20 Aligned_cols=92 Identities=32% Similarity=0.432 Sum_probs=79.0
Q ss_pred CCCCCCCCcHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHH
Q psy8421 25 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLR 104 (237)
Q Consensus 25 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~ 104 (237)
...+.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. ++.+++++|+++|++++.++..|.||+|
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN--GHLEVVKLLLEAGADVXAQDKFGKTAFD 95 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCccccccCCCcHHH
Confidence 44567788999999999999999999999999998888999999999965 8999999999999999888888999999
Q ss_pred HHHhcCCHHHHHHH
Q psy8421 105 AACYDGRLDIVKYL 118 (237)
Q Consensus 105 ~a~~~~~~~~~~~L 118 (237)
+|+..++.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 99999999888876
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.79 E-value=6.3e-19 Score=113.89 Aligned_cols=89 Identities=31% Similarity=0.426 Sum_probs=51.4
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q psy8421 96 TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 175 (237)
Q Consensus 96 ~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~ 175 (237)
+..|.++||+|+..++.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|++++.++..|.||||+|+
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~--~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 98 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN--GHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT--TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc--CCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence 34455555555555555555555555555555555555566655555 5555566655555555555555666666666
Q ss_pred HcCChhHHHHH
Q psy8421 176 YDGRLDIVKYL 186 (237)
Q Consensus 176 ~~~~~~~~~~L 186 (237)
..|+.+++++|
T Consensus 99 ~~~~~~~~~~L 109 (110)
T 2zgd_A 99 DNGNEDLAEIL 109 (110)
T ss_dssp HHTCHHHHHHH
T ss_pred HcCCHHHHHHh
Confidence 66665555544
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=65.35 E-value=3.8 Score=19.74 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=7.1
Q ss_pred HHHHcCChhHHHHH
Q psy8421 37 AACYDGRLDIVKYL 50 (237)
Q Consensus 37 ~A~~~g~~~~v~~L 50 (237)
.||..|+++.++.|
T Consensus 19 vA~seGd~etv~~L 32 (40)
T 1gp8_A 19 AAASKGDVETYRKL 32 (40)
T ss_dssp HHHTTSCHHHHHHH
T ss_pred HHHhcCCHHHHHHH
Confidence 44555555555544
No 116
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=57.84 E-value=30 Score=27.89 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=59.4
Q ss_pred chhhccCCcHHHHHHH----HHcCCCCCCCCCCCCcHHHHHHHcC-C-------------hhHHHHHHHcCCCccccCcC
Q psy8421 2 IAAYKGAGHLSVIKTL----VHAGADVNHSTKTQSTPLRAACYDG-R-------------LDIVKYLIEHGADLNITNHY 63 (237)
Q Consensus 2 l~~a~~~g~~~~~~~L----~~~~~~~~~~~~~~~t~l~~A~~~g-~-------------~~~v~~Ll~~~~~~~~~~~~ 63 (237)
|..+++.|+++-+..+ .+.|..++.. -.+.|..|+..+ . .++++.+.+.|..++...
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~---tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t-- 107 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQY---HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT-- 107 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHH---HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH--
Confidence 5677888887655444 4566665432 223444444332 1 245566667776665432
Q ss_pred CCcHH-HHHHHhCCCCHHHHHHHH----HcCCCCccCCCCCCCHHHHHHhcCCHHH----HHHHHHcCCCCcc
Q psy8421 64 NNSCL-MIAAYKGAGHLSVIKTLV----HAGADVNHSTKTQSTPLRAACYDGRLDI----VKYLIEHGADLNI 127 (237)
Q Consensus 64 ~~~~l-~~a~~~~~~~~~~~~~ll----~~~~~~~~~~~~~~~~l~~a~~~~~~~~----~~~L~~~~~~~~~ 127 (237)
.+.| ...+.. |..+.+..++ +.|..++... ..+.+...++.|..+- ++.+.+.|..++.
T Consensus 108 -yn~lI~~~~~~--g~~~~A~~l~~~M~~~g~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 108 -FTNGARLAVAK--DDPEMAFDMVKQMKAFGIQPRLRS--YGPALFGFCRKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp -HHHHHHHHHHH--TCHHHHHHHHHHHHHTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred -HHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCccce--ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence 3333 333333 6665544444 4555544321 2234455567777653 3444455666543
No 117
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=40.35 E-value=15 Score=20.46 Aligned_cols=35 Identities=29% Similarity=0.548 Sum_probs=23.6
Q ss_pred hHHHHHHHcCCCcccccCCCCcHHHHHHHhCccccc-cCcccccc
Q psy8421 181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGR-VGPGLFDR 224 (237)
Q Consensus 181 ~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~-~~~~~~~~ 224 (237)
.+.++|-.+| ..++|++|-..|....+ +++.+|++
T Consensus 14 ~I~~fL~~~G---------p~~AL~IAK~LGlktAK~VNp~LY~m 49 (72)
T 3eyi_A 14 DIYRFLKDNG---------PQRALVIAQALGMRTAKDVNRDLYRM 49 (72)
T ss_dssp HHHHHHHHHC---------SEEHHHHHHHTTCCSGGGTHHHHHHH
T ss_pred HHHHHHHHcC---------CchHHHHHHHhCcchhhhcCHHHHHH
Confidence 4666666554 45788888888877665 66666655
No 118
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=39.71 E-value=89 Score=24.56 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=36.4
Q ss_pred cCCcHHHHHHHHHcCCCCCCC--------------CCCCCcHHHHHHHcCChhHHHHHHH
Q psy8421 7 GAGHLSVIKTLVHAGADVNHS--------------TKTQSTPLRAACYDGRLDIVKYLIE 52 (237)
Q Consensus 7 ~~g~~~~~~~L~~~~~~~~~~--------------~~~~~t~l~~A~~~g~~~~v~~Ll~ 52 (237)
..|+...|+..+..|.+++.. -.-|.|.+|.|++..+-+++..|+.
T Consensus 31 ~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 31 VEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 358888888888888776432 2358899999999999999999986
No 119
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=37.05 E-value=17 Score=20.47 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=21.7
Q ss_pred ChhHHHHHHHcCCC-cccccCCCCcHHHHHHHhCccccccCc
Q psy8421 179 RLDIVKYLIEHGAD-LNITNHYNNSCLMIAAYKGIDVGRVGP 219 (237)
Q Consensus 179 ~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~ 219 (237)
.++.++.|.+.|.+ +.-....+.|.-..|..+|.+...+..
T Consensus 18 ~P~~~~vf~~~G~~c~~C~~a~~~tL~~Aa~~~gid~~~ll~ 59 (73)
T 2k5e_A 18 HPGVAGVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILR 59 (73)
T ss_dssp CTHHHHHHHHTTGGGGGTTTGGGSBHHHHHHHTTCCHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHH
Confidence 45666666666654 322222345555666666665554443
No 120
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=32.29 E-value=1.2e+02 Score=20.59 Aligned_cols=129 Identities=14% Similarity=0.058 Sum_probs=57.6
Q ss_pred cHHHHHHHcCChhHHHHHHHcCCCccccCcCCCcHH-HHHHHhCCCCHHHHHHHHHcCCCCccCCCCCCCHHHHHHhcCC
Q psy8421 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL-MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 111 (237)
Q Consensus 33 t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~l-~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~ 111 (237)
+=+-.|...|+.+....+.+..-+ ...+.-| ..|.. .|+.++++....+-.++. ..+......|+
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l~~-----~~~Wk~Lg~~AL~--~gn~~lAe~cy~~~~D~~-------~L~~Ly~~tg~ 75 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKLND-----SITWERLIQEALA--QGNASLAEMIYQTQHSFD-------KLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHCC-----HHHHHHHHHHHHH--TTCHHHHHHHHHHTTCHH-------HHHHHHHHHTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHhCC-----HHHHHHHHHHHHH--cCChHHHHHHHHHhCCHH-------HHHHHHHHhCC
Confidence 345666677776666555543111 1112222 23332 266666666665443333 12344445566
Q ss_pred HHHHHHHHHcCCCCccccCCCCchhHHHHHcCCCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCChhHHHHHHH
Q psy8421 112 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188 (237)
Q Consensus 112 ~~~~~~L~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~ 188 (237)
.+-++.+.+.. .........++.+...+ .-.++++.+.+.|-- .-+...|.-+|..+..+-+++
T Consensus 76 ~e~L~kla~iA----~~~g~~n~af~~~l~lG-dv~~~i~lL~~~~r~--------~eA~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 76 VNKLSKMQNIA----QTREDFGSMLLNTFYNN-STKERSSIFAEGGSL--------PLAYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp HHHHHHHHHHH----HHTTCHHHHHHHHHHHT-CHHHHHHHHHHTTCH--------HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHCccHHHHHHHHHHcC-CHHHHHHHHHHCCCh--------HHHHHHHHHcCcHHHHHHHHH
Confidence 55555554320 01111223344444441 233455655554321 013345555666666665554
No 121
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=30.79 E-value=72 Score=25.65 Aligned_cols=101 Identities=11% Similarity=0.100 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHH----HcCCCccccCcCCCcHHHHHHHhCCCCHHHHHHH-
Q psy8421 11 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI----EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTL- 85 (237)
Q Consensus 11 ~~~~~~L~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~l- 85 (237)
.++++.+.+.|..++... ..+.+...++.|+.+-+..++ +.|..++.. ..+.+..+.. +.|..+-+..+
T Consensus 90 ~~lf~~M~~~G~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~---tyn~lI~~~~-~~g~~~~A~~l~ 163 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEAT--FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR---SYGPALFGFC-RKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHTTCCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH---HHHHHHHHHH-HTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc---eehHHHHHHH-HCCCHHHHHHHH
Confidence 456777778887765432 235677888889876655554 456665543 2444544443 33776554444
Q ss_pred ---HHcCCCCccCCCCCCCHHHHHHhcCCHHHHHHHH
Q psy8421 86 ---VHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119 (237)
Q Consensus 86 ---l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~ 119 (237)
.+.|..++... ..+.+...+..|+.+-+..++
T Consensus 164 ~~M~~~G~~Pd~~t--y~~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 164 AHMVESEVVPEEPE--LAALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp HHHHHTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcCCCCCHHH--HHHHHHHHhhCCCHHHHHHHH
Confidence 45666655322 223445556778766444443
No 122
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=22.92 E-value=28 Score=31.14 Aligned_cols=87 Identities=6% Similarity=0.089 Sum_probs=52.5
Q ss_pred CchhhccCCcHHHHHHHHH-------cCCCCCCCCCCCCcHHHHHHHcCChhHHH----HHHHcCCCccccCcCCCcHH-
Q psy8421 1 MIAAYKGAGHLSVIKTLVH-------AGADVNHSTKTQSTPLRAACYDGRLDIVK----YLIEHGADLNITNHYNNSCL- 68 (237)
Q Consensus 1 ~l~~a~~~g~~~~~~~L~~-------~~~~~~~~~~~~~t~l~~A~~~g~~~~v~----~Ll~~~~~~~~~~~~~~~~l- 68 (237)
||..+|+.|+++-+..+++ .|..++..+ .++.++--|+.|+.+-+. .+.+.|..+|... .+.|
T Consensus 133 LIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvT--YNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT---YntLI 207 (1134)
T 3spa_A 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDM--YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS---YAAAL 207 (1134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH---HHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH---HHHHH
Confidence 4678899999988887773 244554332 456777888888864444 4446687776543 3333
Q ss_pred HHHHHhCCCC-H----HHHHHHHHcCCCCcc
Q psy8421 69 MIAAYKGAGH-L----SVIKTLVHAGADVNH 94 (237)
Q Consensus 69 ~~a~~~~~~~-~----~~~~~ll~~~~~~~~ 94 (237)
..-+.. |. . ++++.+.+.|..++.
T Consensus 208 ~glcK~--G~~~e~A~~Ll~EM~~kG~~PD~ 236 (1134)
T 3spa_A 208 QCMGRQ--DQDAGTIERCLEQMSQEGLKLQA 236 (1134)
T ss_dssp HHHHHH--TCCHHHHHHHHHHHHHHTCCSHH
T ss_pred HHHHhC--CCcHHHHHHHHHHHHHcCCCCCh
Confidence 333322 43 2 455666667777663
No 123
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=22.54 E-value=47 Score=20.98 Aligned_cols=30 Identities=7% Similarity=0.127 Sum_probs=15.3
Q ss_pred CCCCCCCCCCHHHHHHHcCChhHHHHHHHc
Q psy8421 160 VNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189 (237)
Q Consensus 160 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~ 189 (237)
+..+|.--.-++..|+.+++.++++-|++.
T Consensus 28 L~KkDkLykDAietAa~S~d~elaEeLL~y 57 (125)
T 3qil_A 28 LAKKDSLYKDAMQYASESKDTELAEELLQW 57 (125)
T ss_dssp CCSCCCCSSHHHHTTTSSCCSHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333444444555555555555555555544
No 124
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=20.63 E-value=74 Score=20.93 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=28.6
Q ss_pred hHHHHHHHcCCC---------cccccCCCCcHHHHHHHhCccccccCccccccccc
Q psy8421 181 DIVKYLIEHGAD---------LNITNHYNNSCLMIAAYKGIDVGRVGPGLFDRYPS 227 (237)
Q Consensus 181 ~~~~~Ll~~g~~---------~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~ 227 (237)
...++|-++|+. +.-++..|+.|+.-++..-.+-.+....+.++|.+
T Consensus 95 ~Al~lL~~~GI~v~Y~~~Vp~I~NRd~tg~CP~E~~v~~~~dpee~~~~i~~~~~~ 150 (151)
T 1vk9_A 95 PALKLMNEYGQSFSYDEKIPFVLGKDGKSMCPFEKLVLEMDDPEEIIRIVLSKFTS 150 (151)
T ss_dssp HHHHHHHHTTCCEEEEEEESSCBCSSSSSBCHHHHHHHTCCCHHHHHHHHHTTC--
T ss_pred HHHHHHHHcCCceeeeeecceeEccCCCCCCcHHHHHHccCCHHHHHHHHHHHhcc
Confidence 455666666764 22356678888888887766655555555555543
No 125
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=20.61 E-value=3.2e+02 Score=21.59 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=18.3
Q ss_pred HHHHHcCChhHHHHHHHcCCCccc
Q psy8421 36 RAACYDGRLDIVKYLIEHGADLNI 59 (237)
Q Consensus 36 ~~A~~~g~~~~v~~Ll~~~~~~~~ 59 (237)
...+..|+...|+.-+..|.+++-
T Consensus 27 c~gv~e~~~~~ve~y~~~gg~~~r 50 (454)
T 3zrh_A 27 CVGVVEGDLAAIEAYKSSGGDIAR 50 (454)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTC
T ss_pred hHHHHcCChhHHHHHHhcCCchhc
Confidence 355667899999998888877653
Done!