RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8421
(237 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 108 bits (271), Expect = 5e-30
Identities = 53/130 (40%), Positives = 78/130 (60%), Gaps = 4/130 (3%)
Query: 25 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 84
N + TPL A +G L++VK L+E+GAD+N ++ + L +AA GHL ++K
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN--GHLEIVKL 58
Query: 85 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA 144
L+ GADVN K +TPL A +G LD+VK L++HGAD+N + + L +AA
Sbjct: 59 LLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN-- 116
Query: 145 GHLSVIKTLV 154
GHL V+K L+
Sbjct: 117 GHLEVVKLLL 126
Score = 105 bits (265), Expect = 3e-29
Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 93 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
N + TPL A +G L++VK L+E+GAD+N ++ + L +AA G HL ++K
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNG--HLEIVKL 58
Query: 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
L+ GADVN K +TPL A +G LD+VK L++HGAD+N + + L +AA G
Sbjct: 59 LLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNG 117
Score = 102 bits (255), Expect = 9e-28
Identities = 54/130 (41%), Positives = 73/130 (56%), Gaps = 4/130 (3%)
Query: 58 NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY 117
N + + L +AA G HL V+K L+ GADVN TPL A +G L+IVK
Sbjct: 1 NARDEDGRTPLHLAASNG--HLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKL 58
Query: 118 LIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD 177
L+E GAD+N + N+ L +AA G+L V+K L+ GADVN K TPL A +
Sbjct: 59 LLEKGADVNARDKDGNTPLHLAARN--GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN 116
Query: 178 GRLDIVKYLI 187
G L++VK L+
Sbjct: 117 GHLEVVKLLL 126
Score = 94.0 bits (234), Expect = 1e-24
Identities = 52/119 (43%), Positives = 69/119 (57%), Gaps = 4/119 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+AA G HL V+K L+ GADVN TPL A +G L+IVK L+E GAD+N
Sbjct: 12 HLAASNG--HLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
+ N+ L +AA G+L V+K L+ GADVN K TPL A +G L++VK L+
Sbjct: 70 DKDGNTPLHLAARN--GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 103 bits (259), Expect = 1e-25
Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 26/206 (12%)
Query: 12 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGR-----LDIVKYLIEHGADLNITNHYNNS 66
V+K L+ GAD+N STK STPL +IVK L+E+GA++N ++ +
Sbjct: 49 DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGIT 108
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA--CYDGRLDIVKYLIEHGAD 124
L+ A K + S+++ L+ GA+VN L L I+K LI+ G D
Sbjct: 109 PLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD 168
Query: 125 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 184
+N N + L+ G +N TPL A Y+ + VK
Sbjct: 169 INAKN-------------------RVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVK 209
Query: 185 YLIEHGADLNITNHYNNSCLMIAAYK 210
YL++ GA+ N+ N Y ++ L IA
Sbjct: 210 YLLDLGANPNLVNKYGDTPLHIAILN 235
Score = 82.8 bits (205), Expect = 2e-18
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 11 LSVIKTLVHAGADVNHSTKTQSTPLRAACYD--GRLDIVKYLIEHGADLNITNHYNNSCL 68
++K L+ GA+VN TPL A IV+YL+++GA++NI N + L
Sbjct: 86 KEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLL 145
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ----------------STPLRAACYDGRL 112
+ L ++K L+ G D+N + TPL A Y+
Sbjct: 146 HLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNP 205
Query: 113 DIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
+ VKYL++ GA+ N+ N Y ++ L IA + + K L++ G +
Sbjct: 206 EFVKYLLDLGANPNLVNKYGDTPLHIAILN--NNKEIFKLLLNNGPSIKT 253
Score = 67.8 bits (166), Expect = 3e-13
Identities = 35/148 (23%), Positives = 55/148 (37%), Gaps = 20/148 (13%)
Query: 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA--CYDGRLDI------------- 46
A K + S+++ L+ GA+VN L L I
Sbjct: 112 YAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINA 171
Query: 47 ---VKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 103
V YL+ +G +NI + Y + L A Y + +K L+ GA+ N K TPL
Sbjct: 172 KNRVNYLLSYGVPINIKDVYGFTPLHYAVY--NNNPEFVKYLLDLGANPNLVNKYGDTPL 229
Query: 104 RAACYDGRLDIVKYLIEHGADLNITNHY 131
A + +I K L+ +G +
Sbjct: 230 HIAILNNNKEIFKLLLNNGPSIKTIIET 257
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 89.6 bits (223), Expect = 3e-23
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 4/95 (4%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
L A +G L++VK L+E GAD+N+ + ++ L +AA G +L ++K L+ GADVN
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNG--NLEIVKLLLEHGADVNA 56
Query: 95 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 129
K +T L A +G L+IVK L+EHGAD+N+ +
Sbjct: 57 KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 89.6 bits (223), Expect = 3e-23
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 4/95 (4%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
L A +G L++VK L+E GAD+N+ + ++ L +AA G +L ++K L+ GADVN
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNG--NLEIVKLLLEHGADVNA 56
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 197
K +T L A +G L+IVK L+EHGAD+N+ +
Sbjct: 57 KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 81.9 bits (203), Expect = 2e-20
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 6/94 (6%)
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA G +L ++K L+ GADVN T L A +G L+IVK L+EHGAD+N
Sbjct: 1 LHLAAKNG--NLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNA 56
Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 161
+ N+ L +AA G+L ++K L+ GAD+N
Sbjct: 57 KDKDGNTALHLAARN--GNLEIVKLLLEHGADIN 88
Score = 79.6 bits (197), Expect = 2e-19
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+AA G +L ++K L+ GADVN T L A +G L+IVK L+EHGAD+N
Sbjct: 2 HLAAKNG--NLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAK 57
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 93
+ N+ L +AA G+L ++K L+ GAD+N
Sbjct: 58 DKDGNTALHLAARN--GNLEIVKLLLEHGADIN 88
Score = 70.7 bits (174), Expect = 4e-16
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA G +L ++K L+ GADVN T L A +G L+IVK L+EHGAD+N
Sbjct: 1 LHLAAKNG--NLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNA 56
Query: 196 TNHYNNSCLMIAAYKG 211
+ N+ L +AA G
Sbjct: 57 KDKDGNTALHLAARNG 72
Score = 60.7 bits (148), Expect = 2e-12
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+AA G +L ++K L+ GADVN K +T L A +G L+IVK L+EHGAD+N+
Sbjct: 33 HLAARNG--NLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90
Query: 61 N 61
+
Sbjct: 91 D 91
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 90.1 bits (224), Expect = 7e-21
Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 9/204 (4%)
Query: 13 VIKTLVHAGADVNHSTKTQSTPLRA-ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 71
+++ L+ AGADVN + TPL LD++K LI+ GAD+N + + L +
Sbjct: 65 IVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVY 124
Query: 72 AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY----DGRLDIVKYLIEHGADLNI 127
+ VI+ L+ GADVN TPL A + +++++ LI+ GAD+
Sbjct: 125 LSGFNINPKVIRLLLRKGADVNALDLYGMTPL--AVLLKSRNANVELLRLLIDAGADVYA 182
Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLR--AACYDGRLDIVKY 185
+ S L +++ L+ AG D + +TPL A + +V
Sbjct: 183 VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLP 242
Query: 186 LIEHGADLNITNHYNNSCLMIAAY 209
L+ G +N N Y + L AA
Sbjct: 243 LLIAGISINARNRYGQTPLHYAAV 266
Score = 80.8 bits (200), Expect = 1e-17
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 8/168 (4%)
Query: 43 RLDIVKYLIEHGADLNITNHYNNSCL-MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQST 101
++ V+ L+ GAD+N Y + L + Y +++ L+ AGADVN + T
Sbjct: 26 TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFT 85
Query: 102 PLRA-ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
PL LD++K LI+ GAD+N + + L + + VI+ L+ GADV
Sbjct: 86 PLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV 145
Query: 161 NHSTKTQSTPLRAACY----DGRLDIVKYLIEHGADLNITNHYNNSCL 204
N TPL A + +++++ LI+ GAD+ + S L
Sbjct: 146 NALDLYGMTPL--AVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLL 191
Score = 65.4 bits (160), Expect = 2e-12
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 10/168 (5%)
Query: 10 HLSVIKTLVHAGADVNHSTKTQSTPLRAACY----DGRLDIVKYLIEHGADLNITNHYNN 65
+ VI+ L+ GADVN TPL A + +++++ LI+ GAD+ +
Sbjct: 131 NPKVIRLLLRKGADVNALDLYGMTPL--AVLLKSRNANVELLRLLIDAGADVYAVDDRFR 188
Query: 66 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLR--AACYDGRLDIVKYLIEHGA 123
S L +++ L+ AG D + +TPL A + +V L+ G
Sbjct: 189 SLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI 248
Query: 124 DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 171
+N N Y + L AA + + L+ GAD+N + +TPL
Sbjct: 249 SINARNRYGQTPLHYAAV--FNNPRACRRLIALGADINAVSSDGNTPL 294
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 86.3 bits (213), Expect = 2e-19
Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 5/203 (2%)
Query: 13 VIKTLVHAGADVNHSTKTQSTPLRAACYDG-RLDIVKYLIEHGADLNITNHYNNSCLMIA 71
++ L+ GADVN TPL +G + ++ LI GAD+N + + L A
Sbjct: 289 LVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQA 348
Query: 72 AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY 131
+ VI TL+ GA+VN TP+ A + I+ L+++GAD+ +
Sbjct: 349 STLDRNKDIVI-TLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQK 407
Query: 132 NNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG-RLDIVKYLIEHG 190
+ L A ++SV KTL+ GA+VN K STPL AC +LD+++ L+++G
Sbjct: 408 IGTALHFALCGTNPYMSV-KTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNG 466
Query: 191 ADLNITNHYNNSCLMIA-AYKGI 212
AD+N N N L+IA Y GI
Sbjct: 467 ADVNAINIQNQYPLLIALEYHGI 489
Score = 76.6 bits (188), Expect = 4e-16
Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
Query: 13 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 72
++ TL+ GA+VN TP+ A + I+ L+++GAD+ + + L A
Sbjct: 357 IVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFAL 416
Query: 73 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG-RLDIVKYLIEHGADLNITNHY 131
++SV KTL+ GA+VN K STPL AC +LD+++ L+++GAD+N N
Sbjct: 417 CGTNPYMSV-KTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQ 475
Query: 132 NNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS 163
N L+IA + ++ L+H GA++ S
Sbjct: 476 NQYPLLIA----LEYHGIVNILLHYGAELRDS 503
Score = 64.3 bits (156), Expect = 7e-12
Identities = 68/229 (29%), Positives = 102/229 (44%), Gaps = 30/229 (13%)
Query: 11 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
L + + L+ GADVN TP+ A G +V L+ +GAD+NI + S L
Sbjct: 158 LLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLEC 217
Query: 71 AAYK----------------GAGHLSVIKT-----------LVHAGADVNHSTKTQSTPL 103
A LS++K L AG VN ++TPL
Sbjct: 218 AVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPL 277
Query: 104 RAACYDGRLD-IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
A L +V L+E GAD+N N + L + A G + I+TL+ GADVN
Sbjct: 278 HHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTEN-IRTLIMLGADVNA 336
Query: 163 STKTQSTPL-RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 210
+ + TPL +A+ D DIV L+E GA++N ++ + + + AA +
Sbjct: 337 ADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVR 385
Score = 56.2 bits (135), Expect = 3e-09
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 4 AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG-RLDIVKYLIEHGADLNITNH 62
A G +KTL+ GA+VN K STPL AC +LD+++ L+++GAD+N N
Sbjct: 415 ALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINI 474
Query: 63 YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS 95
N L+IA + ++ L+H GA++ S
Sbjct: 475 QNQYPLLIA----LEYHGIVNILLHYGAELRDS 503
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 76.0 bits (186), Expect = 1e-16
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 25 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG---AGHLSV 81
PL +A G IVK L+ GAD+N + ++ L +AA G G++ V
Sbjct: 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126
Query: 82 IKTLVHAGA---DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
K L+ AGA N + +TPL A +G DIV+ L+E GAD N N Y + L
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186
Query: 139 AAYKGAGHLSVIKTLVHAGADVNHS 163
AA G + ++K L+ G ++
Sbjct: 187 AA--KNGRIELVKLLLDKGLHLSLL 209
Score = 75.2 bits (184), Expect = 2e-16
Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 7/182 (3%)
Query: 34 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA-AYKGAGHLSVIKTLVHAGADV 92
L ++ L+ + L + A A LS + + +
Sbjct: 7 ALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHL 66
Query: 93 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG---AGHLSV 149
PL +A G IVK L+ GAD+N + ++ L +AA G G++ V
Sbjct: 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126
Query: 150 IKTLVHAGA---DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206
K L+ AGA N + +TPL A +G DIV+ L+E GAD N N Y + L
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186
Query: 207 AA 208
AA
Sbjct: 187 AA 188
Score = 54.8 bits (131), Expect = 5e-09
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 10/129 (7%)
Query: 13 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRL-----DIVKYLIEHGADLNITNHYNNSC 67
++K L+ +GADVN TPL A +G ++ K L+E GADL++ N +
Sbjct: 88 IVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG 147
Query: 68 ---LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD 124
L AA G + ++ L+ AGAD N T L A +GR+++VK L++ G
Sbjct: 148 NTPLHWAALNGDADI--VELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLH 205
Query: 125 LNITNHYNN 133
L++
Sbjct: 206 LSLLKFNLE 214
Score = 48.3 bits (114), Expect = 8e-07
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 1 MIAAYKG---AGHLSVIKTLVHAGA---DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG 54
+AA G G++ V K L+ AGA N + +TPL A +G DIV+ L+E G
Sbjct: 111 HLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAG 170
Query: 55 ADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS 95
AD N N Y + L AA G + ++K L+ G ++
Sbjct: 171 ADPNSRNSYGVTALDPAA--KNGRIELVKLLLDKGLHLSLL 209
Score = 41.3 bits (96), Expect = 1e-04
Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 1/111 (0%)
Query: 102 PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA-AYKGAGHLSVIKTLVHAGADV 160
L ++ L+ + L + A A LS + + +
Sbjct: 7 ALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHL 66
Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
PL +A G IVK L+ GAD+N + ++ L +AA G
Sbjct: 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNG 117
Score = 28.3 bits (62), Expect = 3.1
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
AA G + ++ L+ AGAD N T L A +GR+++VK L++ G L++
Sbjct: 152 HWAALNGDADI--VELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLL 209
Query: 61 NHYNN 65
Sbjct: 210 KFNLE 214
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 77.2 bits (190), Expect = 2e-16
Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 11/189 (5%)
Query: 35 LRAACYDGRLD--IVKYLIEHGADLNI-TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
+ D ++ I K L+ +GAD+N+ H N+ L A L+ + L+ GA+
Sbjct: 136 IDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLT--ELLLSYGAN 193
Query: 92 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 151
VN KT ++PL A IV L+E+GA + + N+ L I+ ++K
Sbjct: 194 VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGY-CKDYDILK 252
Query: 152 TLVHAGADVN-HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA-- 208
L+ G DVN S T L ++ R +K L+E+GAD+N N Y + L A
Sbjct: 253 LLLEHGVDVNAKSYILGLTALHSSIKSER--KLKLLLEYGADINSLNSYKLTPLSSAVKQ 310
Query: 209 YKGIDVGRV 217
Y I++GR+
Sbjct: 311 YLCINIGRI 319
Score = 59.5 bits (144), Expect = 2e-10
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 23/216 (10%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
A +L V+K+L+ G +VN TPL C + +K +I ++
Sbjct: 47 ARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTL---- 102
Query: 68 LMIAAYKGAGH---LSVIKTLVHAGADVNHSTKTQSTPLRAAC---YDGRLD--IVKYLI 119
A K A + + + K ++ N Q+ L D ++ I K L+
Sbjct: 103 ---VAIKDAFNNRNVEIFKIIL-----TNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLL 154
Query: 120 EHGADLNI-TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG 178
+GAD+N+ H N+ L A L+ + L+ GA+VN KT ++PL A
Sbjct: 155 SYGADINMKDRHKGNTALHYATENKDQRLT--ELLLSYGANVNIPDKTNNSPLHHAVKHY 212
Query: 179 RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDV 214
IV L+E+GA + + N+ L I+ D
Sbjct: 213 NKPIVHILLENGASTDARDKCGNTPLHISVGYCKDY 248
Score = 34.9 bits (80), Expect = 0.032
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 12 SVIKTLVHAGADVN-HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
++K L+ G DVN S T L ++ R +K L+E+GAD+N N Y + L
Sbjct: 249 DILKLLLEHGVDVNAKSYILGLTALHSSIKSER--KLKLLLEYGADINSLNSYKLTPLSS 306
Query: 71 AAYK 74
A +
Sbjct: 307 AVKQ 310
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 76.2 bits (187), Expect = 4e-16
Identities = 61/194 (31%), Positives = 86/194 (44%), Gaps = 16/194 (8%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
+G +++ + GAD+NH PL A G DI+K LI++G D S
Sbjct: 45 SGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVD--------TSI 96
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L I + +IKT++ G DVN T L A G L+ +K L E+GAD+NI
Sbjct: 97 LPIPCIEK----DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI 152
Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187
+ +N C I +IK L+ GA N +PL A G +K LI
Sbjct: 153 ED--DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLI 210
Query: 188 EHGADLNITNHYNN 201
+HG +I N N
Sbjct: 211 DHGN--HIMNKCKN 222
Score = 72.7 bits (178), Expect = 7e-15
Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 15/205 (7%)
Query: 8 AGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
+G + I+ ++ + +N S +TPL A G IV+ I+HGAD+N N
Sbjct: 11 SGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPH 70
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
L+ A GA +IK L+ G D ++ L C + D++K +++ G D+N
Sbjct: 71 PLLTAIKIGAH--DIIKLLIDNGVD--------TSILPIPCIEK--DMIKTILDCGIDVN 118
Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
I + + L A KG L IK L GADVN P+ A DI+K L
Sbjct: 119 IKDAELKTFLHYAIKKG--DLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL 176
Query: 187 IEHGADLNITNHYNNSCLMIAAYKG 211
+E GA N+ ++ S L AA G
Sbjct: 177 LEKGAYANVKDNNGESPLHNAAEYG 201
Score = 55.7 bits (134), Expect = 4e-09
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 6/180 (3%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G L IK L GADVN P+ A DI+K L+E GA N+ ++ S L
Sbjct: 135 GDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPL 194
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
AA G + IK L+ G + + K TPL A R ++ LI + A +N
Sbjct: 195 HNAA--EYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLINN-ASINDQ 250
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC-YDGRLDIVKYLI 187
+ + S + A + +I L++ AD++ P+ A Y + ++K +I
Sbjct: 251 D-IDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDII 309
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 73.3 bits (180), Expect = 5e-15
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 41 DGRLDIVKYLIEHGADLN-ITNHYNNS-CLMIAAYKGAGH-LSVIKTLVHAGADVNHSTK 97
DIVK I GA++N + N Y+ C +++ K H L ++K L+ GAD+N
Sbjct: 48 SPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNS 107
Query: 98 TQSTPLRAACYDG---RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH---LSVIK 151
TPL +G L+I+ ++IE+GAD + + + L + Y + H + +IK
Sbjct: 108 DGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQV--YLQSNHHIDIEIIK 165
Query: 152 TLVHAGADVN-HSTKTQSTPLRAACYDGR------LDIVKYLIEHGADLNITNHYNNSCL 204
L+ G D+N H+ K + L CY DI+K +++G +N N +
Sbjct: 166 LLLEKGVDINTHNNKEKYDTLH--CYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKF 223
Query: 205 M 205
M
Sbjct: 224 M 224
Score = 71.8 bits (176), Expect = 1e-14
Identities = 59/223 (26%), Positives = 96/223 (43%), Gaps = 23/223 (10%)
Query: 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG---RLDIVKYLIEHGADLN 58
I YK L ++K L+ GAD+N TPL +G L+I+ ++IE+GAD
Sbjct: 82 IKDYKHM--LDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTT 139
Query: 59 ITNHYNNSCLMIAAYKGAGH---LSVIKTLVHAGADVN-HSTKTQSTPLRAACYDGR--- 111
+ + + L + Y + H + +IK L+ G D+N H+ K + L CY
Sbjct: 140 LLDKDGFTMLQV--YLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLH--CYFKYNID 195
Query: 112 ---LDIVKYLIEHGADLNITNHYNNSCLMIAA----YKGAGHLSVIKTLVHAGADVNHST 164
DI+K +++G +N N + M Y I + + D+N
Sbjct: 196 RIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVD 255
Query: 165 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
+ PL + I +YL++ G D+NI N+CL A
Sbjct: 256 ELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTA 298
Score = 44.1 bits (104), Expect = 3e-05
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 16/153 (10%)
Query: 1 MIAAYKGAGH---LSVIKTLVHAGADVN-HSTKTQSTPLRAACYDGR------LDIVKYL 50
M+ Y + H + +IK L+ G D+N H+ K + L CY DI+K
Sbjct: 148 MLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLH--CYFKYNIDRIDADILKLF 205
Query: 51 IEHGADLNITNHYNNSCLMIAA----YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA 106
+++G +N N + M Y I + + D+N + PL +
Sbjct: 206 VDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYS 265
Query: 107 CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 139
I +YL++ G D+NI N+CL A
Sbjct: 266 VSHNNRKIFEYLLQLGGDINIITELGNTCLFTA 298
Score = 40.2 bits (94), Expect = 5e-04
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 14/74 (18%)
Query: 147 LSVIKTLVHAGADVNHSTKTQSTPLRAAC--------YDGRLDIVKYLIEHGADLNITNH 198
++K ++ GA+VN STPL C Y LDIVK LIE+GAD+N N
Sbjct: 51 TDIVKLFINLGANVNGLDNEYSTPL---CTILSNIKDYKHMLDIVKILIENGADINKKNS 107
Query: 199 YNNS---CLMIAAY 209
+ CL+ Y
Sbjct: 108 DGETPLYCLLSNGY 121
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 65.8 bits (160), Expect = 1e-12
Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 5/204 (2%)
Query: 13 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 72
IK L+ GA + + L A +G + V+ L++ G + + + + A
Sbjct: 50 AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLA 109
Query: 73 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN 132
L ++K L+ GAD + + +PL A G + ++ LI+H A L+I +
Sbjct: 110 TI-LKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCG 168
Query: 133 NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGA 191
+ L+IA K G +++ K L+ +GA++++ K L A + ++DIV+ I+ GA
Sbjct: 169 CTPLIIAMAK--GDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGA 226
Query: 192 DLNI-TNHYNNSCLMIAAYKGIDV 214
D NI C ++ +
Sbjct: 227 DCNIMFMIEGEECTILDMICNMCT 250
Score = 61.5 bits (149), Expect = 5e-11
Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 7/136 (5%)
Query: 11 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
L ++K L+ GAD + + +PL A G + ++ LI+H A L+I + + L+I
Sbjct: 115 LDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLII 174
Query: 71 AAYKGAGHLSVIKTLVHAGADVNHSTKTQS-TPLRAACYDGRLDIVKYLIEHGADLNIT- 128
A K G +++ K L+ +GA++++ K L A + ++DIV+ I+ GAD NI
Sbjct: 175 AMAK--GDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMF 232
Query: 129 ---NHYNNSCLMIAAY 141
MI
Sbjct: 233 MIEGEECTILDMICNM 248
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 60.5 bits (147), Expect = 1e-10
Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 13/205 (6%)
Query: 13 VIKTLVHAGADVNHSTKTQSTPLR-AACYDGRLDIVKYLIEHGADLNITNHYNNS-CLMI 70
++ L+ G DVN + S L D ++ IVK LI++GAD+N + C ++
Sbjct: 18 ALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCAVL 77
Query: 71 AAYKGAGHL--SVIKTLVHAGADVNHSTKTQSTPLRAACYD---GRLDIVKYLIEHGADL 125
+ + ++K L+ GAD+N T +P+ Y+ D++++L+ G ++
Sbjct: 78 RNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINV 137
Query: 126 N-ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKT-QSTP----LRAACYDGR 179
N + N + L + + VIK L+ G ++ T TP LR
Sbjct: 138 NDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVIS 197
Query: 180 LDIVKYLIEHGADLNITNHYNNSCL 204
+ ++KYLI+ G ++ N+ + S L
Sbjct: 198 IKVIKYLIKKGVNIETNNNGSESVL 222
Score = 45.1 bits (107), Expect = 1e-05
Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 22/216 (10%)
Query: 13 VIKTLVHAGADVNHSTKTQSTPLRAACYD---GRLDIVKYLIEHGADLN-ITNHYNNSCL 68
++K L+ GAD+N T +P+ Y+ D++++L+ G ++N + N + L
Sbjct: 90 IVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLL 149
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKT-QSTP----LRAACYDGRLDIVKYLIEHGA 123
+ + VIK L+ G ++ T TP LR + ++KYLI+ G
Sbjct: 150 HMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGV 209
Query: 124 DLNITNHYNNSCL-------MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTP-LRAAC 175
++ N+ + S L I + K L+ I + +N K P L +A
Sbjct: 210 NIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYI----KINKKDKKGFNPLLISAK 265
Query: 176 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
D + YL++ G D+ + ++ L A G
Sbjct: 266 VDNY-EAFNYLLKLGDDIYNVSKDGDTVLTYAIKHG 300
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 54.6 bits (132), Expect = 2e-10
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 86
T L A GRL++VKYL+E G D+N T+ N+ L IAA G+L V+K L+
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAEN--GNLEVLKLLL 54
Score = 54.6 bits (132), Expect = 2e-10
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
T L A GRL++VKYL+E G D+N T+ N+ L IAA G+L V+K L+
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAEN--GNLEVLKLLL 54
Score = 50.7 bits (122), Expect = 5e-09
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
T L A GRL++VKYL+E G D+N T+ N+ L IAA G
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENG 45
Score = 42.6 bits (101), Expect = 4e-06
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 64 NNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
+ L AA G L ++K L+ G D+N + + +T L A +G L+++K L+
Sbjct: 1 GRTALHKAAISG--RLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 42.6 bits (101), Expect = 4e-06
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 132 NNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187
+ L AA G L ++K L+ G D+N + + +T L A +G L+++K L+
Sbjct: 1 GRTALHKAAISG--RLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 38.8 bits (91), Expect = 1e-04
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 51
AA G L ++K L+ G D+N + + +T L A +G L+++K L+
Sbjct: 6 HKAAISG--RLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 54.4 bits (131), Expect = 5e-09
Identities = 44/197 (22%), Positives = 80/197 (40%), Gaps = 44/197 (22%)
Query: 24 VNHSTKTQSTPLRAACYDGR---LDIVKYLIEHGADLN-ITNHYNNSCL-MIAAYKGAGH 78
VN TP+ + C + ++I+K+LIE+GAD+N T N S L ++
Sbjct: 44 VNDCNDLYETPIFS-CLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVE 102
Query: 79 LSVIKTLVHAGADVNHSTKTQSTPL-RAAC-YDGRLDIVKYLIEHGAD-LNITNHYNNSC 135
++K L+ +G+ + + L C ++ R++++K LI+ G LN NN
Sbjct: 103 PEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNN-- 160
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
++ +Y + HS K I +L G D+N
Sbjct: 161 -ILYSYI-----------------LFHSDK---------------KIFDFLTSLGIDINE 187
Query: 196 TNHYNNSCLMIAAYKGI 212
TN +C + ++ +
Sbjct: 188 TNKSGYNCYDLIKFRNL 204
Score = 41.0 bits (96), Expect = 2e-04
Identities = 28/138 (20%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 11 LSVIKTLVHAGADVNHSTKTQSTPLRAA--CYDGRL--DIVKYLIEHGADLNITNHYNNS 66
+ ++K L+ GADVN T+ + ++ + +I+K LI+ G+ + + +
Sbjct: 66 VEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKN 125
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA-ACYDGRLDIVKYLIEHGADL 125
L + ++VIK L+ +G + + L + + I +L G D+
Sbjct: 126 LLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDI 185
Query: 126 NITNHYNNSCLMIAAYKG 143
N TN +C + ++
Sbjct: 186 NETNKSGYNCYDLIKFRN 203
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 55.6 bits (134), Expect = 5e-09
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 6/155 (3%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G+ ++++ L+ A D + TPL A G D V L++H +++I + N+ L
Sbjct: 536 GNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL 595
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 128
A A H + + L H + + L A L +K L++ G +++
Sbjct: 596 WNAI--SAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSE 651
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS 163
+H + L +A H+ +++ L+ GADV+ +
Sbjct: 652 DHQGATALQVAM--AEDHVDMVRLLIMNGADVDKA 684
Score = 37.5 bits (87), Expect = 0.004
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 65
L+ +K L+ G +V+ +T L+ A + +D+V+ LI +GAD++ N ++
Sbjct: 633 NDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDD 689
Score = 30.6 bits (69), Expect = 0.77
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 112 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 171
L++ L ++G + + N +N L +A+ A L + L+ A D + TPL
Sbjct: 507 LNVGDLLGDNGGEHDDPNMASN-LLTVASTGNAALL---EELLKAKLDPDIGDSKGRTPL 562
Query: 172 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
A G D V L++H +++I + N+ L
Sbjct: 563 HIAASKGYEDCVLVLLKHACNVHIRDANGNTAL 595
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 45.4 bits (108), Expect = 4e-07
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 17 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 71
L H D+N + +TPL A G L++V++L++ G DLN+ + + L +A
Sbjct: 2 LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 45.4 bits (108), Expect = 4e-07
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 85 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 139
L H D+N + +TPL A G L++V++L++ G DLN+ + + L +A
Sbjct: 2 LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 45.4 bits (108), Expect = 4e-07
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
L H D+N + +TPL A G L++V++L++ G DLN+ + + L +A
Sbjct: 2 LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 33.5 bits (77), Expect = 0.007
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 50 LIEHG-ADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA 106
L+EHG DLN T+ N+ L +AA G L +++ L+ G D+N T L A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAK--YGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 33.5 bits (77), Expect = 0.007
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 118 LIEHG-ADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA 174
L+EHG DLN T+ N+ L +AA G L +++ L+ G D+N T L A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAK--YGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 47.7 bits (113), Expect = 2e-06
Identities = 44/195 (22%), Positives = 77/195 (39%), Gaps = 3/195 (1%)
Query: 14 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY 73
++ L+H G N + + PL A IV L+ HGAD N + + + L +
Sbjct: 55 VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSG 114
Query: 74 KGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 133
+ I LV GA +N+S + AC D + K ++ G + I + +
Sbjct: 115 TDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGK 174
Query: 134 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD--GRLDIVKYLIEHGA 191
+ + S I ++ G + +TPL C +DI+ L+
Sbjct: 175 NHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-ST 233
Query: 192 DLNITNHYNNSCLMI 206
D+N N + +S L +
Sbjct: 234 DVNKQNKFGDSPLTL 248
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 46.0 bits (109), Expect = 8e-06
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 47 VKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA 106
+ L+ GAD N ++ + L IA G H+ V++ L+ GAD K TPL A
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANG--HVQVVRVLLEFGADPTLLDKDGKTPLELA 155
Query: 107 CYDGRLDIVKYLIEH 121
+G ++V+ L H
Sbjct: 156 EENGFREVVQLLSRH 170
Score = 46.0 bits (109), Expect = 8e-06
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 115 VKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAA 174
+ L+ GAD N ++ + L IA G H+ V++ L+ GAD K TPL A
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANG--HVQVVRVLLEFGADPTLLDKDGKTPLELA 155
Query: 175 CYDGRLDIVKYLIEH 189
+G ++V+ L H
Sbjct: 156 EENGFREVVQLLSRH 170
Score = 43.3 bits (102), Expect = 5e-05
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 14 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY 73
+ L+ GAD N TPL AC +G + +V+ L+E GAD + + + L +A
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157
Query: 74 KGAG 77
G
Sbjct: 158 NGFR 161
Score = 43.3 bits (102), Expect = 5e-05
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY 141
+ L+ GAD N TPL AC +G + +V+ L+E GAD + + + L +A
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157
Query: 142 KGAG 145
G
Sbjct: 158 NGFR 161
Score = 42.6 bits (100), Expect = 1e-04
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 150 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY 209
+ L+ GAD N TPL AC +G + +V+ L+E GAD + + + L +A
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157
Query: 210 KG 211
G
Sbjct: 158 NG 159
Score = 38.0 bits (88), Expect = 0.003
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 53
GH+ V++ L+ GAD K TPL A +G ++V+ L H
Sbjct: 126 GHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities. Repeats 13-24 are
especially active, with known sites of interaction for
the Na/K ATPase, Cl/HCO(3) anion exchanger,
voltage-gated sodium channel, clathrin heavy chain and
L1 family cell adhesion molecules. The ANK repeats are
found to form a contiguous spiral stack such that ion
transporters like the anion exchanger associate in a
large central cavity formed by the ANK repeat spiral,
while clathrin and cell adhesion molecules associate
with specific regions outside this cavity.
Length = 33
Score = 39.5 bits (93), Expect = 3e-05
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNH 62
TPL A +G L++VK L+E GAD+N +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 39.5 bits (93), Expect = 3e-05
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNH 130
TPL A +G L++VK L+E GAD+N +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 39.5 bits (93), Expect = 3e-05
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNITNH 198
TPL A +G L++VK L+E GAD+N +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 32.9 bits (76), Expect = 0.009
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 63 YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 97
N+ L +AA G HL V+K L+ AGADVN K
Sbjct: 1 DGNTPLHLAARNG--HLEVVKLLLEAGADVNARDK 33
Score = 32.9 bits (76), Expect = 0.009
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 131 YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
N+ L +AA G HL V+K L+ AGADVN K
Sbjct: 1 DGNTPLHLAARNG--HLEVVKLLLEAGADVNARDK 33
Score = 27.9 bits (63), Expect = 0.49
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTK 29
+AA G HL V+K L+ AGADVN K
Sbjct: 7 HLAARNG--HLEVVKLLLEAGADVNARDK 33
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities.
Length = 30
Score = 37.2 bits (87), Expect = 2e-04
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNI 59
TPL A +G L++VK L+EHGAD+N
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADINA 30
Score = 37.2 bits (87), Expect = 2e-04
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNI 127
TPL A +G L++VK L+EHGAD+N
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADINA 30
Score = 37.2 bits (87), Expect = 2e-04
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNI 195
TPL A +G L++VK L+EHGAD+N
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADINA 30
Score = 29.1 bits (66), Expect = 0.16
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 63 YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 94
N+ L +AA G+L ++K L+ GAD+N
Sbjct: 1 DGNTPLHLAAR--NGNLELVKLLLEHGADINA 30
Score = 29.1 bits (66), Expect = 0.16
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 131 YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
N+ L +AA G+L ++K L+ GAD+N
Sbjct: 1 DGNTPLHLAAR--NGNLELVKLLLEHGADINA 30
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 33.7 bits (78), Expect = 0.003
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNI 59
TPL A +G L++VK L++ GAD+N
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 33.7 bits (78), Expect = 0.003
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNI 127
TPL A +G L++VK L++ GAD+N
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 33.7 bits (78), Expect = 0.003
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNI 195
TPL A +G L++VK L++ GAD+N
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 27.9 bits (63), Expect = 0.45
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 63 YNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 93
+ L +AA G +L V+K L+ GAD+N
Sbjct: 1 DGRTPLHLAAENG--NLEVVKLLLDKGADIN 29
Score = 27.9 bits (63), Expect = 0.45
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 131 YNNSCLMIAAYKGAGHLSVIKTLVHAGADVN 161
+ L +AA G +L V+K L+ GAD+N
Sbjct: 1 DGRTPLHLAAENG--NLEVVKLLLDKGADIN 29
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 36.2 bits (84), Expect = 0.011
Identities = 38/157 (24%), Positives = 55/157 (35%), Gaps = 44/157 (28%)
Query: 8 AGH---LSVIKTLVHAGADV------NHSTKTQST--------PLRAACYDGRLDIVKYL 50
A H ++K L+ GA V + K+Q PL AA G IV L
Sbjct: 135 AAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALL 194
Query: 51 IEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG 110
E AD+ + N+ L HL V+ + K + L Y+
Sbjct: 195 SEDPADILTADSLGNTLL---------HLLVM----------ENEFKAEYEELSCQMYNF 235
Query: 111 RLDIVKYLIEHGADLN----ITNHYNNSCLMIAAYKG 143
L L++ D I NH + L +AA +G
Sbjct: 236 ALS----LLDKLRDSKELEVILNHQGLTPLKLAAKEG 268
Score = 32.4 bits (74), Expect = 0.19
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 134 SCLMIAAYKGAGHLSVIKTLVHAGADV------NHSTKTQST--------PLRAACYDGR 179
+ L +AA++ + ++K L+ GA V + K+Q PL AA G
Sbjct: 130 TALHLAAHRQ--NYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGS 187
Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIAA 208
IV L E AD+ + N+ L +
Sbjct: 188 PSIVALLSEDPADILTADSLGNTLLHLLV 216
Score = 31.2 bits (71), Expect = 0.50
Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 36/143 (25%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNI------------TNHYNNSCLMIAAYKGAGHLS 148
T L A + +IVK L+E GA + + + + + A G S
Sbjct: 130 TALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPS 189
Query: 149 VIKTLVHAGADVN----------HSTKTQS------TPLRAACYDGRLDIVKYLIEHGAD 192
++ L AD+ H ++ L Y+ L L++ D
Sbjct: 190 IVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALS----LLDKLRD 245
Query: 193 LN----ITNHYNNSCLMIAAYKG 211
I NH + L +AA +G
Sbjct: 246 SKELEVILNHQGLTPLKLAAKEG 268
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 35.7 bits (82), Expect = 0.015
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 147 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206
L + K + D+N T L A Y G +D+V +L+E+GA++N +CL +
Sbjct: 201 LEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDV 260
Query: 207 AAYKGIDVGR 216
A +G + R
Sbjct: 261 AVDRGSVIAR 270
Score = 35.4 bits (81), Expect = 0.024
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 11 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
L + K + D+N T L A Y G +D+V +L+E+GA++N +CL +
Sbjct: 201 LEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDV 260
Query: 71 AAYKGA 76
A +G+
Sbjct: 261 AVDRGS 266
Score = 35.4 bits (81), Expect = 0.024
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 79 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
L + K + D+N T L A Y G +D+V +L+E+GA++N +CL +
Sbjct: 201 LEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDV 260
Query: 139 AAYKGA 144
A +G+
Sbjct: 261 AVDRGS 266
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 35.3 bits (81), Expect = 0.023
Identities = 41/206 (19%), Positives = 78/206 (37%), Gaps = 24/206 (11%)
Query: 13 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRL--DIVKYLIEHGADLNITNHYNNSCLMI 70
+++ L + G +VN TPL G + ++K +IE G D+++ S +M
Sbjct: 194 ILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMT 253
Query: 71 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY-----DGRLDIVKYLIEHGADL 125
++ + + + K ++ P+ Y + + +V ++ G L
Sbjct: 254 YI---INIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL 310
Query: 126 NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY--------- 176
+ + +CL + +IK L G D+N +T L
Sbjct: 311 HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILD 370
Query: 177 -----DGRLDIVKYLIEHGADLNITN 197
D RLD+++ LI GAD+ N
Sbjct: 371 PETDNDIRLDVIQCLISLGADITAVN 396
Score = 32.2 bits (73), Expect = 0.22
Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 26/176 (14%)
Query: 44 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 103
+DI+++L +G ++N+ N++ + L G SVIK ++ G D++
Sbjct: 192 IDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMD---------- 241
Query: 104 RAACYDGRLDIVKYLIE-HGADLNITNHYNNSC---------LMIAAYKGAGH---LSVI 150
C +G I+ Y+I + ITN Y S +++ +Y +SV+
Sbjct: 242 -MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVV 300
Query: 151 KTLVHAGADVNHSTKTQSTPLRAAC--YDGRLDIVKYLIEHGADLNITNHYNNSCL 204
+ + G +++ T L ++ DI+K L E+G DLN ++ N+ L
Sbjct: 301 YSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVL 356
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 33.0 bits (75), Expect = 0.15
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 147 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL-- 204
LS++K D+N K + L + +V++LI++GAD+NIT Y ++C+
Sbjct: 390 LSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGI 449
Query: 205 -MIAAYKGI 212
+I A+ I
Sbjct: 450 CVILAHACI 458
Score = 32.6 bits (74), Expect = 0.15
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 11 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
LS++K D+N K + L + +V++LI++GAD+NIT Y ++C+ I
Sbjct: 390 LSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGI 449
Score = 32.6 bits (74), Expect = 0.15
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 79 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
LS++K D+N K + L + +V++LI++GAD+NIT Y ++C+ I
Sbjct: 390 LSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGI 449
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 30.0 bits (67), Expect = 1.3
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 11 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
LS I + D+N K T L A + +V L+E G+D+NI ++ +C+ I
Sbjct: 432 LSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAI 491
Query: 71 A 71
A
Sbjct: 492 A 492
Score = 30.0 bits (67), Expect = 1.3
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 79 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
LS I + D+N K T L A + +V L+E G+D+NI ++ +C+ I
Sbjct: 432 LSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAI 491
Query: 139 A 139
A
Sbjct: 492 A 492
Score = 30.0 bits (67), Expect = 1.3
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 147 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206
LS I + D+N K T L A + +V L+E G+D+NI ++ +C+ I
Sbjct: 432 LSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAI 491
Query: 207 A 207
A
Sbjct: 492 A 492
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 29.2 bits (65), Expect = 1.7
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 45 DIVKYLIEHGADLNIT-----NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN-HSTKT 98
DI+ +++ GAD N N +I A + K L+ GADVN ++ +
Sbjct: 47 DIIDAILKLGADPEAPFPLSENSKTNP--LIYAIDCDNDDA-AKLLIRYGADVNRYAEEA 103
Query: 99 QSTPLRAACYDGRLDIVKYLIEHGADLNI 127
+ TPL + G L ++ L+ +GAD+NI
Sbjct: 104 KITPLYISVLHGCLKCLEILLSYGADINI 132
Score = 29.2 bits (65), Expect = 1.7
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 113 DIVKYLIEHGADLNIT-----NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN-HSTKT 166
DI+ +++ GAD N N +I A + K L+ GADVN ++ +
Sbjct: 47 DIIDAILKLGADPEAPFPLSENSKTNP--LIYAIDCDNDDA-AKLLIRYGADVNRYAEEA 103
Query: 167 QSTPLRAACYDGRLDIVKYLIEHGADLNI 195
+ TPL + G L ++ L+ +GAD+NI
Sbjct: 104 KITPLYISVLHGCLKCLEILLSYGADINI 132
Score = 29.2 bits (65), Expect = 2.0
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 12/113 (10%)
Query: 13 VIKTLVHAGADVN----HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
+I ++ GAD S +++ PL A D K LI +GAD+N Y
Sbjct: 48 IIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVN---RYAEEAK 104
Query: 69 MIAAYKGA--GHLSVIKTLVHAGADVNHSTKTQSTPLRAA---CYDGRLDIVK 116
+ Y G L ++ L+ GAD+N T TP+ A C + ++
Sbjct: 105 ITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC 157
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 28.4 bits (63), Expect = 4.2
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 49 YLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH-AGADVNHSTKTQSTPLRAA 106
Y+ E D + YN + AY G G+L V+ TL+H A +D N + RAA
Sbjct: 520 YINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVR------RAA 572
Score = 28.4 bits (63), Expect = 4.2
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 117 YLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH-AGADVNHSTKTQSTPLRAA 174
Y+ E D + YN + AY G G+L V+ TL+H A +D N + RAA
Sbjct: 520 YINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVR------RAA 572
>gnl|CDD|214001 cd12802, HopAB_PID, Pto-interacting domain of the HopAB family of
Type III Effector proteins. HopAB family members are
type III effector proteins that are secreted by the
plant pathogen Pseudomonas syringae into the host plant
to inhibit its immune system and facilitate the spread
of the pathogen. AvrPtoB, also called HopAB3, is the
best studied member of the family. It suppresses host
basal defenses by interfering with PAMP
(pathogen-associated molecular signature)-triggered
immunity (PTI) through binding and inhibiting BAK1, a
kinase which serves to activate defense signaling. It
also recognizes the kinase Pto to activate
effector-triggered immunity (ETI). AvrPtoB contains an
N-terminal region that contains two kinase-interacting
domains (KID) and a C-terminal E3 ligase domain. The
first KID recognizes the PTI-associated kinase Bti9 as
well as Pto, and is referred to as the Pto-binding
domain (PID). The second KID interacts with BAK1 and
FLS2, which are leucine-rich repeat-containing
receptor-like kinases, and is called the
BAK1-interacting domain (BID). This family also
contains a unique member, HopPmaL, which is shorter and
lacks the C-terminal E3 ligase domain.
Length = 79
Score = 26.0 bits (57), Expect = 6.8
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 12 SVIKTLVHAGADVNHSTKTQSTPLR--AACYDGR-LDIVKYLIEHGADLNITNHYNNSCL 68
+++ LV AGAD+ + + A +I L +H ++ + +S L
Sbjct: 8 RIVQQLVEAGADLANIRTMLRNAMNGDAVALSRVEQNI---LRQHFPNMLMCGISRDSEL 64
Query: 69 MIA 71
IA
Sbjct: 65 AIA 67
Score = 26.0 bits (57), Expect = 6.8
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 80 SVIKTLVHAGADVNHSTKTQSTPLR--AACYDGR-LDIVKYLIEHGADLNITNHYNNSCL 136
+++ LV AGAD+ + + A +I L +H ++ + +S L
Sbjct: 8 RIVQQLVEAGADLANIRTMLRNAMNGDAVALSRVEQNI---LRQHFPNMLMCGISRDSEL 64
Query: 137 MIA 139
IA
Sbjct: 65 AIA 67
Score = 26.0 bits (57), Expect = 6.8
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 148 SVIKTLVHAGADVNHSTKTQSTPLR--AACYDGR-LDIVKYLIEHGADLNITNHYNNSCL 204
+++ LV AGAD+ + + A +I L +H ++ + +S L
Sbjct: 8 RIVQQLVEAGADLANIRTMLRNAMNGDAVALSRVEQNI---LRQHFPNMLMCGISRDSEL 64
Query: 205 MIA 207
IA
Sbjct: 65 AIA 67
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.402
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,577,901
Number of extensions: 1057141
Number of successful extensions: 1456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1212
Number of HSP's successfully gapped: 133
Length of query: 237
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 143
Effective length of database: 6,768,326
Effective search space: 967870618
Effective search space used: 967870618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)