RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8421
(237 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 212 bits (543), Expect = 3e-67
Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 6/211 (2%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+AA G H V K L+ A VN K TPL A G ++VK L+E+ A+ N+
Sbjct: 52 HMAARAG--HTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
++ L IAA + GH+ + L+ A TK TPL A G++ + + L+E
Sbjct: 110 TTAGHTPLHIAARE--GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
A N + L +A + +L ++K L+ G + TPL A ++
Sbjct: 168 RDAHPNAAGKNGLTPLHVAVHH--NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV 225
Query: 181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
++ + L+++G N + + L +AA +G
Sbjct: 226 EVARSLLQYGGSANAESVQGVTPLHLAAQEG 256
Score = 212 bits (543), Expect = 3e-67
Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 6/211 (2%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+A + +L ++K L+ G + TPL A ++++ + L+++G N
Sbjct: 184 HVAVHHN--NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+ + L +AA +G H ++ L+ A+ N K+ TPL +G + + LI+
Sbjct: 242 SVQGVTPLHLAAQEG--HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
HG ++ T + L +A++ G ++ ++K L+ ADVN TK +PL A G
Sbjct: 300 HGVMVDATTRMGYTPLHVASHYG--NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 357
Query: 181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
DIV L+++GA N + + L IA G
Sbjct: 358 DIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388
Score = 210 bits (538), Expect = 1e-66
Identities = 63/211 (29%), Positives = 98/211 (46%), Gaps = 6/211 (2%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+A++ G HL ++K L+ GA N S TPL A G ++ KYL+++ A +N
Sbjct: 19 HVASFMG--HLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+ + L AA GH +++K L+ A+ N +T TPL A +G ++ V L+E
Sbjct: 77 AKDDQTPLHCAARI--GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
A + L +AA G + V + L+ A N + K TPL A + L
Sbjct: 135 KEASQACMTKKGFTPLHVAAKY--GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
Query: 181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
DIVK L+ G + + L IAA +
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 223
Score = 202 bits (516), Expect = 3e-63
Identities = 59/191 (30%), Positives = 89/191 (46%), Gaps = 4/191 (2%)
Query: 21 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80
G ++ TPL A + G L IVK L++ GA N++N + L +AA GH
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA--GHTE 61
Query: 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 140
V K L+ A VN K TPL A G ++VK L+E+ A+ N+ ++ L IAA
Sbjct: 62 VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 121
Query: 141 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN 200
+ GH+ + L+ A TK TPL A G++ + + L+E A N
Sbjct: 122 RE--GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179
Query: 201 NSCLMIAAYKG 211
+ L +A +
Sbjct: 180 LTPLHVAVHHN 190
Score = 192 bits (491), Expect = 2e-59
Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 9/212 (4%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
IAA + + V ++L+ G N + TPL A +G ++V L+ A+ N+
Sbjct: 217 HIAAKQN--QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
N + L + A +G H+ V L+ G V+ +T+ TPL A + G + +VK+L++
Sbjct: 275 NKSGLTPLHLVAQEG--HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
H AD+N S L AA +G H ++ L+ GA N + +TPL A G +
Sbjct: 333 HQADVNAKTKLGYSPLHQAAQQG--HTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 390
Query: 181 DIVKYL---IEHGADLNITNHYNNSCLMIAAY 209
+ L + + + +++ + S
Sbjct: 391 SVTDVLKVVTDETSFVLVSDKHRMSFPETVDE 422
Score = 170 bits (433), Expect = 6e-51
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 18/197 (9%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+AA +G H ++ L+ A+ N K+ TPL +G + + LI+HG ++ T
Sbjct: 250 HLAAQEG--HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 307
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+ L +A++ G ++ ++K L+ ADVN TK +PL A G DIV L++
Sbjct: 308 TRMGYTPLHVASHYG--NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA---GADVNHSTKTQSTPLRAACYD 177
+GA N + + L IA G++SV L + V S K + +
Sbjct: 366 NGASPNEVSSDGTTPLAIAKRL--GYISVTDVLKVVTDETSFVLVSDKHRMSF------- 416
Query: 178 GRLDIVKYLIEHGADLN 194
+ V +++ D
Sbjct: 417 --PETVDEILDVSEDEG 431
Score = 159 bits (404), Expect = 1e-46
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 4/159 (2%)
Query: 53 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 112
G + L +A++ GHL ++K L+ GA N S TPL A G
Sbjct: 3 PGISGGGGGESGLTPLHVASFM--GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT 60
Query: 113 DIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLR 172
++ KYL+++ A +N + + L AA GH +++K L+ A+ N +T TPL
Sbjct: 61 EVAKYLLQNKAKVNAKAKDDQTPLHCAARI--GHTNMVKLLLENNANPNLATTAGHTPLH 118
Query: 173 AACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
A +G ++ V L+E A + L +AA G
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG 157
Score = 135 bits (343), Expect = 9e-38
Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 18/165 (10%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+ A +G H+ V L+ G V+ +T+ TPL A + G + +VK+L++H AD+N
Sbjct: 283 HLVAQEG--HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL-- 118
S L AA +G H ++ L+ GA N + +TPL A G + + L
Sbjct: 341 TKLGYSPLHQAAQQG--HTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV 398
Query: 119 -IEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
+ + + +++ + + ++ D
Sbjct: 399 VTDETSFVLVSDKH-----------RMSFPETVDEILDVSEDEGE 432
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 200 bits (512), Expect = 5e-65
Identities = 65/212 (30%), Positives = 107/212 (50%), Gaps = 7/212 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
AA G H+ + LV AGA+++ ++ Q TPL A + L+ VKYLI+ GA ++
Sbjct: 16 HAAAEAG--HVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
+ ++CL +AA K GH V++ L+ G DVN TP+ A +D+VK L+
Sbjct: 74 DAEGSTCLHLAAKK--GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
G+D+NI ++ N CL AA+ G + + + L+ A D++ +PL A + R
Sbjct: 132 SKGSDINIRDNEENICLHWAAFS--GCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENR 189
Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
D V + +D+ + N + L A+
Sbjct: 190 YDCVVLFLSRDSDVTLKNKEGETPLQCASLNS 221
Score = 178 bits (454), Expect = 3e-56
Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 5/191 (2%)
Query: 22 ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSV 81
+ + + +PL AA G +DI L++ GA+++ + + LM AA HL
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN--NHLEA 59
Query: 82 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAA 140
+K L+ AGA V+ ST L A G ++V+YL+ +G D+N + + ++ A
Sbjct: 60 VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 141 YKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN 200
H+ ++K L+ G+D+N ++ L A + G +DI + L+ DL+ N +
Sbjct: 120 EY--KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG 177
Query: 201 NSCLMIAAYKG 211
+S L IAA +
Sbjct: 178 DSPLHIAAREN 188
Score = 176 bits (450), Expect = 1e-55
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 7/193 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNI 59
M AA HL +K L+ AGA V+ ST L A G ++V+YL+ +G D+N
Sbjct: 49 MEAAENN--HLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC 106
Query: 60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
+ + ++ A H+ ++K L+ G+D+N ++ L A + G +DI + L+
Sbjct: 107 QDDGGWTPMIWATEYK--HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
DL+ N + +S L IAA + + + +DV K TPL+ A + +
Sbjct: 165 AAKCDLHAVNIHGDSPLHIAAREN--RYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ 222
Query: 180 LDIVKYLIEHGAD 192
+ + + D
Sbjct: 223 VWSALQMSKALQD 235
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 198 bits (506), Expect = 5e-64
Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 7/213 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+ A G + LV AG DV K T L A + R+D+VKY I GA ++
Sbjct: 14 VKATQYG--IYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71
Query: 61 -NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
N++ L A + GHLS++ L+ GAD + + + A G IV YLI
Sbjct: 72 GGDLNSTPLHWATRQ--GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI 129
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ-STPLRAACYDG 178
G D+++ + + LM AAY+ + + L+ VN K +T L A G
Sbjct: 130 AKGQDVDMMDQNGMTPLMWAAYRT-HSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188
Query: 179 RLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
++ L+E GA+++ N S L +A +
Sbjct: 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRK 221
Score = 180 bits (459), Expect = 6e-57
Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 9/200 (4%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTK-TQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
AA + ++K + GA V+ STPL A G L +V L+++GAD ++
Sbjct: 47 HWAAINN--RIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL 104
Query: 60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG-RLDIVKYL 118
+ SC+ +AA G H S++ L+ G DV+ + TPL A Y +D + L
Sbjct: 105 IDGEGCSCIHLAAQFG--HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162
Query: 119 IEHGADLNITNHYN-NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD 177
+ +N+ + Y+ N+ L A G + +VI L+ AGA+V+ + L A
Sbjct: 163 LTFNVSVNLGDKYHKNTALHWAVLAG--NTTVISLLLEAGANVDAQNIKGESALDLAKQR 220
Query: 178 GRLDIVKYLIEHGADLNITN 197
+ ++ +L E N
Sbjct: 221 KNVWMINHLQEARQAKGYDN 240
Score = 177 bits (452), Expect = 7e-56
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 7/191 (3%)
Query: 24 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 83
+ H + + A G + + L+E G D+ + N + L AA + ++K
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN--NRIDLVK 59
Query: 84 TLVHAGADVNHSTK-TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 142
+ GA V+ STPL A G L +V L+++GAD ++ + SC+ +AA
Sbjct: 60 YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF 119
Query: 143 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG-RLDIVKYLIEHGADLNITNHYN- 200
GH S++ L+ G DV+ + TPL A Y +D + L+ +N+ + Y+
Sbjct: 120 --GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK 177
Query: 201 NSCLMIAAYKG 211
N+ L A G
Sbjct: 178 NTALHWAVLAG 188
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 193 bits (494), Expect = 9e-62
Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 8/211 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
AA G H ++ L+ G VN T +PL AC G L VK L++HGA +N
Sbjct: 64 HEAAIHG--HQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
++ L A G + L+ GA V ++P+ A G ++ V LI
Sbjct: 122 TADWHTPLFNACVS--GSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIA 178
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
+G +++ + + L +A + +K L+ +GADVN K Q +PL A
Sbjct: 179 YGGNIDHKISHLGTPLYLACEN--QQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASE 235
Query: 181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
++ L++ GAD N + + +
Sbjct: 236 ELACLLMDFGADTQAKNAEGKRPVELVPPES 266
Score = 182 bits (465), Expect = 3e-57
Identities = 62/241 (25%), Positives = 92/241 (38%), Gaps = 39/241 (16%)
Query: 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQS----------------------------- 32
+ + H LV G+ + Q
Sbjct: 1 MGSSHH--HHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS 58
Query: 33 --TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 90
+P+ A G ++ LI G +NI + S L A GHLS +K L+ GA
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG--GHLSCVKILLKHGA 116
Query: 91 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
VN T TPL AC G D V L++HGA + + S + AA + GH+ +
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARR--GHVECV 173
Query: 151 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 210
+L+ G +++H TPL AC + + VK L+E GAD+N +S L
Sbjct: 174 NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK-GQDSPLHAVVRT 232
Query: 211 G 211
Sbjct: 233 A 233
Score = 173 bits (441), Expect = 9e-54
Identities = 57/194 (29%), Positives = 83/194 (42%), Gaps = 9/194 (4%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
A G HLS +K L+ GA VN T TPL AC G D V L++HGA +
Sbjct: 97 HEACLGG--HLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 154
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+ S + AA +G H+ + +L+ G +++H TPL AC + + VK L+E
Sbjct: 155 SDLA-SPIHEAARRG--HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
GAD+N +S L + L+ GAD P+ + L
Sbjct: 212 SGADVNQGK-GQDSPLHAVVRTA--SEELACLLMDFGADTQAKNAEGKRPVELVPPESPL 268
Query: 181 DIVKYLIEHGADLN 194
+ +L GA L
Sbjct: 269 AQL-FLEREGASLP 281
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 193 bits (492), Expect = 1e-61
Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 8/211 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
AA G H ++ L+ G VN T +PL AC G L VK L++HGA +N
Sbjct: 8 HEAAIHG--HQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 65
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
++ L A G + L+ GA V ++P+ A G ++ V LI
Sbjct: 66 TADWHTPLFNACVS--GSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIA 122
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
+G +++ + + L +A + +K L+ +GADVN K Q +PL A
Sbjct: 123 YGGNIDHKISHLGTPLYLACEN--QQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASE 179
Query: 181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
++ L++ GAD N + + +
Sbjct: 180 ELACLLMDFGADTQAKNAEGKRPVELVPPES 210
Score = 186 bits (474), Expect = 6e-59
Identities = 54/211 (25%), Positives = 84/211 (39%), Gaps = 10/211 (4%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
A G HLS +K L+ GA VN T TPL AC G D V L++HGA +
Sbjct: 41 HEACLGG--HLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 98
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+ S + AA +G H+ + +L+ G +++H TPL AC + + VK L+E
Sbjct: 99 SDLA-SPIHEAARRG--HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 155
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
GAD+N +S L A + L+ GAD P+ +
Sbjct: 156 SGADVNQGK-GQDSPLHAVARTA--SEELACLLMDFGADTQAKNAEGKRPVELVPPES-- 210
Query: 181 DIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+ + +E ++ +
Sbjct: 211 PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQ 241
Score = 176 bits (449), Expect = 3e-55
Identities = 58/179 (32%), Positives = 84/179 (46%), Gaps = 6/179 (3%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
+P+ A G ++ LI G +NI + S L A GHLS +K L+ GA V
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG--GHLSCVKILLKHGAQV 62
Query: 93 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
N T TPL AC G D V L++HGA + + S + AA + GH+ + +
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARR--GHVECVNS 119
Query: 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
L+ G +++H TPL AC + + VK L+E GAD+N +S L A
Sbjct: 120 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK-GQDSPLHAVARTA 177
Score = 167 bits (426), Expect = 1e-51
Identities = 34/191 (17%), Positives = 68/191 (35%), Gaps = 10/191 (5%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
A G + L+ GA V ++P+ A G ++ V LI +G +++
Sbjct: 74 FNACVSG--SWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 130
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+ + L +A + +K L+ +GADVN K Q +PL A ++ L++
Sbjct: 131 ISHLGTPLYLACENQ--QRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMD 187
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
GAD N + + + + + + + + +
Sbjct: 188 FGADTQAKNAEGKRPVELVPPESP----LAQLFLEREGPPSLMQLCRLRIRKCFGIQQHH 243
Query: 181 DIVKYLIEHGA 191
I K ++
Sbjct: 244 KITKLVLPEDL 254
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 185 bits (472), Expect = 2e-58
Identities = 63/227 (27%), Positives = 99/227 (43%), Gaps = 22/227 (9%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTK-TQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
+ A + +++ L+ GA+VN + TPL A R DIV+ L+ HGAD +
Sbjct: 10 IKAVQNE--DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
+ ++AA G + ++K + GADVN T A G++ +K+L
Sbjct: 68 RKKNGATPFLLAAIA--GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 125
Query: 120 EHGADLNITNHYNNSC----------LMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQS 168
+ GA++N+ LM AA K GH+ V+K L+ GADVN
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEK--GHVEVLKILLDEMGADVNACDNMGR 183
Query: 169 TPLRAACYDGR----LDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
L A I L++HGAD+N+ + L++A K
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230
Score = 179 bits (457), Expect = 3e-56
Identities = 58/225 (25%), Positives = 99/225 (44%), Gaps = 18/225 (8%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
A +++ L+ GAD K +TP A G + ++K + GAD+N
Sbjct: 44 HNAVQMS--REDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC 101
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS----------TPLRAACYDG 110
+ Y + M AA G + +K L GA+VN KT+ T L A G
Sbjct: 102 DFYGFTAFMEAAVY--GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159
Query: 111 RLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKG--AGHLSVIKTLVHAGADVNHSTKTQ 167
++++K L++ GAD+N ++ + L+ A + ++ L+ GADVN +
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 219
Query: 168 STPLRAACYDGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKG 211
TPL A L +V+ L+E ++N T+ + L++A
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264
Score = 176 bits (448), Expect = 1e-54
Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 22/213 (10%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
++AA G + ++K + GADVN T A G++ +K+L + GA++N+
Sbjct: 77 LLAAIAG--SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 134
Query: 61 NHYNNSC----------LMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYD 109
LM AA KG H+ V+K L+ GADVN L A
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKG--HVEVLKILLDEMGADVNACDNMGRNALIHALLS 192
Query: 110 GR----LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHST 164
I L++HGAD+N+ + L++A K HL +++ L+ ++N +
Sbjct: 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK--HLGLVQRLLEQEHIEINDTD 250
Query: 165 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 197
T L A I + L + GA + +
Sbjct: 251 SDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 163 bits (415), Expect = 7e-50
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC-LMIAAYKGAGHLSVIKTLVHAGAD 91
L A + +D+V+ L+E GA++N L A +++ L+ GAD
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM--SREDIVELLLRHGAD 64
Query: 92 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 151
K +TP A G + ++K + GAD+N + Y + M AA G + +K
Sbjct: 65 PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY--GKVKALK 122
Query: 152 TLVHAGADVNHSTKTQS----------TPLRAACYDGRLDIVKYLIEH-GADLNITNHYN 200
L GA+VN KT+ T L A G ++++K L++ GAD+N ++
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182
Query: 201 NSCLMIAAYKG 211
+ L+ A
Sbjct: 183 RNALIHALLSS 193
Score = 135 bits (343), Expect = 4e-39
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 15/162 (9%)
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK-TQSTPLRAACYDGRLDIVKYLI 119
+N L+ A + +++ L+ GA+VN + TPL A R DIV+ L+
Sbjct: 2 AVEDNHLLIKAVQN--EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
HGAD + + ++AA G + ++K + GADVN T A G+
Sbjct: 60 RHGADPVLRKKNGATPFLLAAIA--GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117
Query: 180 LDIVKYLIEHGADLNITNHYNNSC----------LMIAAYKG 211
+ +K+L + GA++N+ LM AA KG
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 176 bits (450), Expect = 1e-56
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 4/166 (2%)
Query: 32 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
S + G + + IE +N T+ + LM AA G ++V++ L+ GAD
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG--QIAVVEFLLQNGAD 61
Query: 92 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 151
K + + L AC G DIVK L++ G D+N + + L+ A + H+ +K
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG--NHVKCVK 119
Query: 152 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 197
L+ +GAD T + + A G + + + H L
Sbjct: 120 MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165
Score = 163 bits (416), Expect = 2e-51
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 6/165 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
A +G + + T + +NH+ + TPL A G++ +V++L+++GAD +
Sbjct: 8 HQLAAQG--EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
S L +A K G+ ++K L+ G DVN TPL A + + VK L+E
Sbjct: 66 GKGRESALSLACSK--GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
GAD I + + +A G+ SV + + + + K
Sbjct: 124 SGADPTIETDSGYNSMDLAVAL--GYRSVQQVIESHLLKLLQNIK 166
Score = 147 bits (375), Expect = 3e-45
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 4/144 (2%)
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
+ A +G + + T + +NH+ + TPL A G++ +V++L+++GAD +
Sbjct: 7 VHQLAAQG--EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64
Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187
S L +A KG + ++K L+ G DVN TPL A + + VK L+
Sbjct: 65 LGKGRESALSLACSKG--YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122
Query: 188 EHGADLNITNHYNNSCLMIAAYKG 211
E GAD I + + +A G
Sbjct: 123 ESGADPTIETDSGYNSMDLAVALG 146
Score = 122 bits (308), Expect = 3e-35
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 100 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 159
S + G + + IE +N T+ + LM AA G ++V++ L+ GAD
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG--QIAVVEFLLQNGAD 61
Query: 160 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
K + + L AC G DIVK L++ G D+N + + L+ A +
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN 113
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 180 bits (460), Expect = 1e-56
Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 11/201 (5%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
A ++ ++ TL++AGA N PL A IVK L+ G D +
Sbjct: 36 YYAIADN--NVRLVCTLLNAGALKN--LLENEFPLHQAATLEDTKIVKILLFSGLDDSQF 91
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKT-QSTPLRAACYDGRLDIVKYLI 119
+ N+ L A G++ +K V + KT T A + IV Y +
Sbjct: 92 DDKGNTALYYAVDS--GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL 149
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTP-LRAACYDG 178
SC+ I GH+ ++ L+ N + P ++ A +
Sbjct: 150 SEIPS-TFDLAILLSCIHITIKN--GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK 206
Query: 179 RLDIVKYLIEHGADLNITNHY 199
+++++ L ++ ++ N
Sbjct: 207 DIEMLQALFKYDINIYSANLE 227
Score = 167 bits (426), Expect = 2e-51
Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 10/213 (4%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
M + +K+ + D + + A D + +V L+ GA N+
Sbjct: 2 MDLSRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL 60
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
N L AA ++K L+ +G D + +T L A G + VK ++
Sbjct: 61 E--NEFPLHQAATL--EDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK 116
Query: 121 HGADLNI-TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
L + A +S++ + + + +G
Sbjct: 117 KNWRLMFYGKTGWKTSFYHAVML--NDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGH 173
Query: 180 LDIVKYLIEHGADLNITNHYNNS-CLMIAAYKG 211
+D++ L+++ N N + +A
Sbjct: 174 VDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK 206
Score = 165 bits (420), Expect = 1e-50
Identities = 26/210 (12%), Positives = 66/210 (31%), Gaps = 16/210 (7%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI- 59
AA ++K L+ +G D + +T L A G + VK ++ L
Sbjct: 67 HQAATLE--DTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY 124
Query: 60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
+ A +S++ + + + +G +D++ L+
Sbjct: 125 GKTGWKTSFYHAVML--NDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLL 181
Query: 120 EHGADLNITNHYNNS-CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG 178
++ N N + +A + +++ L ++ +
Sbjct: 182 DYMTSTNTNNSLLFIPDIKLAIDN--KDIEMLQALFKYDINIY-------SANLENVLLD 232
Query: 179 RLDIVKYLIEHGADLNITNHYNNSCLMIAA 208
+I K +IE + ++ + ++
Sbjct: 233 DAEIAKMIIEKHVEYKSDSYTKDLDIVKNN 262
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 175 bits (447), Expect = 4e-56
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 5/169 (2%)
Query: 32 STPLRAACYDGRLDIVKYLIEHGADL-NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 90
S + G LD +K + G +L N + + L+ A+ G + ++ L+ GA
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG--EIETVRFLLEWGA 60
Query: 91 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
D + K + + L A G DIV L+E D+NI + + L+ A H+ +
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG--NHVKCV 118
Query: 151 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHY 199
+ L+ GAD+ + TP+ A G + + + H L +N
Sbjct: 119 EALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLV 167
Score = 163 bits (416), Expect = 3e-51
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 7/171 (4%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGAD-VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
A +G L +K + G + VN + TPL A G ++ V++L+E GAD +I
Sbjct: 7 HQLAAQG--ELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
S L +A+ G+ ++ L+ D+N TPL A + V+ L+
Sbjct: 65 LAKERESALSLASTG--GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL 122
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTP 170
GADL + + +A G+ V + + + + S + P
Sbjct: 123 ARGADLTTEADSGYTPMDLAVAL--GYRKVQQVIENHILKLFQSNLVPADP 171
Score = 118 bits (298), Expect = 1e-33
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 100 STPLRAACYDGRLDIVKYLIEHGADL-NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158
S + G LD +K + G +L N + + L+ A+ G + ++ L+ GA
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG--EIETVRFLLEWGA 60
Query: 159 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
D + K + + L A G DIV L+E D+NI + + L+ A
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN 113
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 177 bits (452), Expect = 6e-56
Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 15/220 (6%)
Query: 1 MIAAYKGAGHLSVIKTLV----HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD 56
IA +G +L + LV G +++ + TPL A +V+ L+ GA
Sbjct: 14 HIAVVQG--NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71
Query: 57 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA----DVNHSTKTQSTPLRAACYDGRL 112
+ + + +A + ++ L+ + A D+ T L A
Sbjct: 72 PMALDRHGQTAAHLACEHR--SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 129
Query: 113 DIVKYLIEHGADLNITNHYN-NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 171
+ V+ L+E GAD++ + + S L+ A LS+++ L+ GA+VN + S+ L
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENN--SLSMVQLLLQHGANVNAQMYSGSSAL 187
Query: 172 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+A G L +V+ L+ GAD ++ N +N++ LM+A +
Sbjct: 188 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 227
Score = 163 bits (416), Expect = 2e-50
Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 11/196 (5%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA----D 56
+A SV++ LV AGA + T AC ++ L++ A D
Sbjct: 51 HLAVITT--LPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108
Query: 57 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS-TKTQSTPLRAACYDGRLDIV 115
L N+ + L +A ++ L+ GAD++ K+ +PL A + L +V
Sbjct: 109 LEARNYDGLTALHVAVNTE--CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166
Query: 116 KYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 175
+ L++HGA++N + +S L A+ +G L +++TLV +GAD + TPL A
Sbjct: 167 QLLLQHGANVNAQMYSGSSALHSASGRG--LLPLVRTLVRSGADSSLKNCHNDTPLMVAR 224
Query: 176 YDGRLDIVKYLIEHGA 191
+DI++ A
Sbjct: 225 SRRVIDILRGKATRPA 240
Score = 154 bits (392), Expect = 7e-47
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 13/197 (6%)
Query: 24 VNHSTKTQSTPLRAACYDGRLDIVKYLIE----HGADLNITNHYNNSCLMIAAYKGAGHL 79
+ + TPL A G L V L+ G +L+I N+ + L +A
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT--TLP 59
Query: 80 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA----DLNITNHYNNSC 135
SV++ LV AGA + T AC ++ L++ A DL N+ +
Sbjct: 60 SVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHS-TKTQSTPLRAACYDGRLDIVKYLIEHGADLN 194
L +A ++ L+ GAD++ K+ +PL A + L +V+ L++HGA++N
Sbjct: 120 LHVAVNT--ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 177
Query: 195 ITNHYNNSCLMIAAYKG 211
+ +S L A+ +G
Sbjct: 178 AQMYSGSSALHSASGRG 194
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 179 bits (457), Expect = 2e-55
Identities = 56/233 (24%), Positives = 93/233 (39%), Gaps = 25/233 (10%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+ AA G ++ L + + S +STPL A R+ IV+ L++HGAD++
Sbjct: 29 LEAARSG-NEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+ L A GH V + L+ GA VN Q TPL A R+++ L+
Sbjct: 88 DKGGLVPLHNACSY--GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145
Query: 121 HGADLNITNHYNNSCLMIAAYKG-------------------AGHLSVIKTLVHAGADVN 161
HGAD + N + S + +A L+ +K +
Sbjct: 146 HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF 205
Query: 162 HSTKTQSTPLRAAC---YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
++ T L A + R + + L+ GA++N N + L +AA +
Sbjct: 206 KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA 258
Score = 176 bits (449), Expect = 4e-54
Identities = 52/230 (22%), Positives = 87/230 (37%), Gaps = 26/230 (11%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
A G H V + L+ GA VN Q TPL A R+++ L+ HGAD +
Sbjct: 96 HNACSYG--HYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV 153
Query: 61 NHYNNSCLMIAAYKG-------------------AGHLSVIKTLVHAGADVNHSTKTQST 101
N + S + +A L+ +K + ++ T
Sbjct: 154 NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET 213
Query: 102 PLRAAC---YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158
L A + R + + L+ GA++N N + L +AA + H V++ L GA
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA--HNDVMEVLHKHGA 271
Query: 159 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 208
+N T L A G L + L+ +G+D +I + + +
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN 321
Score = 159 bits (406), Expect = 9e-48
Identities = 37/186 (19%), Positives = 73/186 (39%), Gaps = 5/186 (2%)
Query: 17 LVHAGADVNHSTKTQSTPL-RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 75
L A + + + L AA ++ L + + ++ ++ L +AA
Sbjct: 10 LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGY- 68
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 135
+ +++ L+ GADV+ K PL AC G ++ + L++HGA +N + + +
Sbjct: 69 -NRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTP 127
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L AA K + V L+ GAD + + A + + Y + + L
Sbjct: 128 LHEAASK--NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQA 185
Query: 196 TNHYNN 201
+
Sbjct: 186 AREADL 191
Score = 154 bits (393), Expect = 7e-46
Identities = 43/233 (18%), Positives = 78/233 (33%), Gaps = 33/233 (14%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY----------- 49
AA K + V L+ GAD + + A + + Y
Sbjct: 129 HEAASKN--RVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAA 186
Query: 50 ----------LIEHGADLNITNHYNNSCLMIAAYKG-AGHLSVIKTLVHAGADVNHSTKT 98
+ + + L A V + L+ GA+VN K
Sbjct: 187 READLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD 246
Query: 99 QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158
TPL A D+++ L +HGA +N + + L AA G HL + L+ G+
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG--HLQTCRLLLSYGS 304
Query: 159 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
D + + T + + V+ ++ + ++ + L+ A+ G
Sbjct: 305 DPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSD--VDYRLLEASKAG 350
Score = 154 bits (393), Expect = 9e-46
Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 3/166 (1%)
Query: 46 IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA 105
L + A +T Y L+ AA G ++ L + + S +STPL
Sbjct: 6 SALDLADPSAKAVLTGEYKKDELLEAARSG-NEEKLMALLTPLNVNCHASDGRKSTPLHL 64
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
A R+ IV+ L++HGAD++ + L A GH V + L+ GA VN
Sbjct: 65 AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY--GHYEVTELLLKHGACVNAMDL 122
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
Q TPL A R+++ L+ HGAD + N + S + +A
Sbjct: 123 WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE 168
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 175 bits (446), Expect = 7e-55
Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 17/224 (7%)
Query: 1 MIAAYKGAG-----------HLSVIKTLVHAGADV-NHSTKTQSTPLRAACYDGRLDIVK 48
MIA+ G G +VI ++ GA + N + +T T L A R D K
Sbjct: 15 MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAK 74
Query: 49 YLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAAC 107
L+E AD NI ++ + L A V + L+ A D++ +TPL A
Sbjct: 75 RLLEASADANIQDNMGRTPLHAAVSAD--AQGVFQILIRNRATDLDARMHDGTTPLILAA 132
Query: 108 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ 167
+++ LI AD+N + S L AA ++ L+ GA+ + +
Sbjct: 133 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN--NVDAAVVLLKNGANKDMQNNRE 190
Query: 168 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
TPL A +G + K L++H A+ +IT+H + IA +
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 234
Score = 168 bits (429), Expect = 3e-52
Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 7/198 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNI 59
+AA K L+ A AD N TPL AA + + LI + A DL+
Sbjct: 62 HLAARYS--RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
H + L++AA +++ L+++ ADVN + L A +D L+
Sbjct: 120 RMHDGTTPLILAARLA--VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 177
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
++GA+ ++ N+ + L +AA +G K L+ A+ + + P A
Sbjct: 178 KNGANKDMQNNREETPLFLAAREG--SYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 235
Query: 180 LDIVKYLIEHGADLNITN 197
DIV+ L + +
Sbjct: 236 HDIVRLLDLEHHHHHHHH 253
Score = 156 bits (397), Expect = 2e-47
Identities = 53/204 (25%), Positives = 84/204 (41%), Gaps = 19/204 (9%)
Query: 23 DVNHSTKTQSTPLRAACYDG-------------RLDIVKYLIEHGADL-NITNHYNNSCL 68
DVN TPL A G ++ I GA L N T+ + L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 69 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNI 127
+AA K L+ A AD N TPL AA + + LI + A DL+
Sbjct: 62 HLAARY--SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187
H + L++AA +++ L+++ ADVN + L A +D L+
Sbjct: 120 RMHDGTTPLILAARL--AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 177
Query: 188 EHGADLNITNHYNNSCLMIAAYKG 211
++GA+ ++ N+ + L +AA +G
Sbjct: 178 KNGANKDMQNNREETPLFLAAREG 201
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 177 bits (452), Expect = 2e-54
Identities = 38/225 (16%), Positives = 65/225 (28%), Gaps = 22/225 (9%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE-----HGA 55
G +L +IK LV GA K TPL A + + +++
Sbjct: 143 HWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSL 202
Query: 56 DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIV 115
L+ N NS L A V V G DVN + PL + + +
Sbjct: 203 RLDYANKQGNSHLHWAILIN--WEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLT 260
Query: 116 KYLIEHGADLNITNHYNN-------------SCLMIAAYKGAGHLSVIKTLVHAGADVNH 162
K L++ I + + AA V++ L +V
Sbjct: 261 KELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPS--KQEVLQLLQEKLDEVVR 318
Query: 163 STKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
S T + + + + A + + ++
Sbjct: 319 SLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 168 bits (428), Expect = 7e-51
Identities = 45/231 (19%), Positives = 72/231 (31%), Gaps = 35/231 (15%)
Query: 7 GAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
G G + + S + A G+ D V+ LIE G I N + +
Sbjct: 1 GPGSM-----TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCT 55
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD-- 124
L +A G + K L G + P+ A + D+V L+E +
Sbjct: 56 ALHLACKF--GCVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERG 111
Query: 125 -------------------LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
++ + + L G +L +IK LV GA K
Sbjct: 112 QMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK 171
Query: 166 TQSTPLRAACYDGRLDIVKYLIE-----HGADLNITNHYNNSCLMIAAYKG 211
TPL A + + +++ L+ N NS L A
Sbjct: 172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN 222
Score = 166 bits (423), Expect = 3e-50
Identities = 42/228 (18%), Positives = 69/228 (30%), Gaps = 32/228 (14%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA----- 55
+A G + K L G + P+ A + D+V L+E
Sbjct: 58 HLACKFG--CVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQM 113
Query: 56 ----------------DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ 99
++ + + L G +L +IK LV GA K
Sbjct: 114 PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKAD 173
Query: 100 STPLRAACYDGRLDIVKYLIE-----HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV 154
TPL A + + +++ L+ N NS L A V V
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILI--NWEDVAMRFV 231
Query: 155 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 202
G DVN + PL + + + K L++ I ++
Sbjct: 232 EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN 279
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 173 bits (440), Expect = 3e-54
Identities = 50/219 (22%), Positives = 92/219 (42%), Gaps = 12/219 (5%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
A + V + L + + + PL + +I +L+ ++N+
Sbjct: 7 HQACMEN-EFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 61 NHYNNS---CLMIAAYKGAGHLSVIKTLV--HAGADVNHSTKTQSTPLRAACYDGRLDIV 115
++ ++S IA G +L V+K+L D+N T T L A ++
Sbjct: 66 DYPDDSGWTPFHIACSVG--NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 116 KYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAA 174
++LIE+GA + I + +N L AA G L +I+ L + VN K TPL A
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASV--GSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 175 CYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGI 212
+G D L+E +GA+ ++ ++ +A + +
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV 220
Score = 152 bits (386), Expect = 3e-46
Identities = 44/187 (23%), Positives = 71/187 (37%), Gaps = 11/187 (5%)
Query: 32 STPLRAACYDGRLDIV-KYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 90
+ PL AC + V + L + L + L + + L+
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF--QAHEITSFLLSKME 60
Query: 91 DVN---HSTKTQSTPLRAACYDGRLDIVKYLIEH--GADLNITNHYNNSCLMIAAYKGAG 145
+VN + + TP AC G L++VK L + DLN + +CL +A K
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK--K 118
Query: 146 HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG-ADLNITNHYNNSCL 204
V + L+ GA V K PL A G L +++ L G + +N + + L
Sbjct: 119 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 205 MIAAYKG 211
A +G
Sbjct: 179 FHALAEG 185
Score = 146 bits (370), Expect = 9e-44
Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 16/196 (8%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVN---HSTKTQSTPLRAACYDGRLDIVKYLIEH--GA 55
+ + L+ +VN + + TP AC G L++VK L +
Sbjct: 41 HWSVSFQ--AHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP 98
Query: 56 DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIV 115
DLN + +CL +A K V + L+ GA V K PL A G L ++
Sbjct: 99 DLNKITNQGVTCLHLAVGKK--WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 116 KYLIEHG-ADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRA 173
+ L G + +N + + L A +G H LV GA+ + +
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEG--HGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Query: 174 ACYDGRLDIVKYLIEH 189
A + K+ + +
Sbjct: 215 AL---NEQVKKFFLNN 227
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 172 bits (438), Expect = 6e-54
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 6/206 (2%)
Query: 8 AGHLSVIKTLVHAGADV-NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 66
+VI ++ GA + N + +T T L A R D K L+E AD NI ++ +
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 67 CLMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 125
L A V + L+ A D++ +TPL A +++ LI AD+
Sbjct: 61 PLHAAVSAD--AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118
Query: 126 NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKY 185
N + S L AA ++ L+ GA+ + + TPL A +G + K
Sbjct: 119 NAVDDLGKSALHWAAAVN--NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176
Query: 186 LIEHGADLNITNHYNNSCLMIAAYKG 211
L++H A+ +IT+H + IA +
Sbjct: 177 LLDHFANRDITDHMDRLPRDIAQERM 202
Score = 167 bits (425), Expect = 4e-52
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 7/199 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNI 59
+AA K L+ A AD N TPL AA + + LI + A DL+
Sbjct: 30 HLAARYS--RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 87
Query: 60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
H + L++AA +++ L+++ ADVN + L A +D L+
Sbjct: 88 RMHDGTTPLILAARLA--VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 145
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
++GA+ ++ N+ + L +AA +G K L+ A+ + + P A
Sbjct: 146 KNGANKDMQNNREETPLFLAAREG--SYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 203
Query: 180 LDIVKYLIEHGADLNITNH 198
DIV+ L E+ + H
Sbjct: 204 HDIVRLLDEYNLVRSPQLH 222
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 173 bits (440), Expect = 1e-53
Identities = 44/225 (19%), Positives = 70/225 (31%), Gaps = 19/225 (8%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN-- 58
+AA G S ++ L AGA V + + T L AC L++
Sbjct: 50 HLAAILG--EASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD 107
Query: 59 -----------ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 107
T +++ + + + TPL A
Sbjct: 108 ASDTYLTQSQDCTPDTSHAPAAVDSQPN-PENEEEPRDEDWRLQLEAENYDGHTPLHVAV 166
Query: 108 YDGRLDIVKYLIEHGADLNI-TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKT 166
++V+ L + GADLN + L +A SV++ L+ AGAD
Sbjct: 167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ--AASVLELLLKAGADPTARMYG 224
Query: 167 QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
TPL +A + + L HGA S +
Sbjct: 225 GRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269
Score = 164 bits (417), Expect = 4e-50
Identities = 36/229 (15%), Positives = 69/229 (30%), Gaps = 24/229 (10%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGAD---VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 57
+A H + L+ A ++ T L A G V+ L GA +
Sbjct: 14 HLAVIHQ--HEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71
Query: 58 NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTP--------------L 103
+ ++ L +A + L+
Sbjct: 72 LVAERGGHTALHLACRV--RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129
Query: 104 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS 163
+ + + + L N+ ++ L +A +++ L AGAD+N
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH--KDAEMVRLLRDAGADLNKP 187
Query: 164 TKTQ-STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
T TPL A +++ L++ GAD + + L A +
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236
Score = 148 bits (376), Expect = 4e-44
Identities = 37/205 (18%), Positives = 64/205 (31%), Gaps = 20/205 (9%)
Query: 24 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD---LNITNHYNNSCLMIAAYKGAGHLS 80
+ T+ T L A + +L+ A L++ N + L +AA G S
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL--GEAS 59
Query: 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN-------------I 127
++ L AGA V + + T L AC L++
Sbjct: 60 TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119
Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187
T +++ + + + TPL A ++V+ L
Sbjct: 120 TPDTSHAPAAVDSQPN-PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR 178
Query: 188 EHGADLNI-TNHYNNSCLMIAAYKG 211
+ GADLN + L +A
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQ 203
Score = 139 bits (352), Expect = 2e-40
Identities = 30/205 (14%), Positives = 61/205 (29%), Gaps = 21/205 (10%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTP--------------LRAACYDGRLDI 46
+A + L+ + + +
Sbjct: 83 HLACRVR--AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140
Query: 47 VKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ-STPLRA 105
+ L N+ ++ L +A +++ L AGAD+N T TPL
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHK--DAEMVRLLRDAGADLNKPEPTCGRTPLHL 198
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
A +++ L++ GAD + + L A + + + + L GA
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP--NPILARLLRAHGAPEPEDGG 256
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHG 190
+ +P ++ D D E+
Sbjct: 257 DKLSPCSSSGSDSDSDNRDEGDEYD 281
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 169 bits (430), Expect = 4e-53
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 9/194 (4%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
A + V + L V+ +TPL A ++ ++I K LI+ GAD+N+
Sbjct: 11 EAANQRD--TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
N ++S + A + G ++ ++ HA D+N + L A G +D VK L+
Sbjct: 69 NSISDSPYLYAGAQ--GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 120 EHG-ADLNITNHYNNSCLMIAAYKGA---GHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 175
E G D++ N + + L+ A + ++K L+ GAD + + T + A
Sbjct: 127 EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN 186
Query: 176 YDGRLDIVKYLIEH 189
G +I K L ++
Sbjct: 187 QKGYTEISKILAQY 200
Score = 165 bits (420), Expect = 1e-51
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 11/186 (5%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
L AA + + L + ++ + N+ L IA + + + K L+ GAD+
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN--NDIEIAKALIDRGADI 65
Query: 93 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLSVIK 151
N +P A GR +I+ Y+++H DLN N Y + L+ AA K GH+ +K
Sbjct: 66 NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK--GHIDNVK 123
Query: 152 TLVHAG-ADVNHSTKTQSTPLRAAC-----YDGRLDIVKYLIEHGADLNITNHYNNSCLM 205
L+ G D++ T L A DIVK L+E+GAD +I ++ + +
Sbjct: 124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD 183
Query: 206 IAAYKG 211
A KG
Sbjct: 184 YANQKG 189
Score = 130 bits (330), Expect = 4e-38
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 6/155 (3%)
Query: 59 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
+ + + L A + V + L V+ +TPL A ++ ++I K L
Sbjct: 1 MKTYEVGALLEAANQR--DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKAL 58
Query: 119 IEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYD 177
I+ GAD+N+ N ++S + A + G ++ ++ HA D+N + L A
Sbjct: 59 IDRGADINLQNSISDSPYLYAGAQ--GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK 116
Query: 178 GRLDIVKYLIEHG-ADLNITNHYNNSCLMIAAYKG 211
G +D VK L+E G D++ N + + L+ A
Sbjct: 117 GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 172 bits (438), Expect = 4e-53
Identities = 52/214 (24%), Positives = 86/214 (40%), Gaps = 14/214 (6%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
A ++ ++K LV GA++N PL AA G LDI +YLI GA +
Sbjct: 78 HQACIDD--NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
N ++ L IA + +++ V G D+ + D ++L
Sbjct: 136 NSEGDTPLDIAEEE--AMEELLQNEVNRQGVDIE-------AARKEEERIMLRDARQWLN 186
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
+ + L +AA K G+ V+K L+ A DVN TPL AA + G+
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAK--GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244
Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID 213
+ + L+E+ D+ N + +A +
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVADEDILG 278
Score = 168 bits (427), Expect = 2e-51
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 14/212 (6%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+ A G + L+ GAD+N++ T L AC D +D+VK+L+E+GA++N
Sbjct: 45 LAACSSG--DTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP 102
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI- 119
++ L AA G+L + + L+ GA V TPL A + ++++ +
Sbjct: 103 DNEGWIPLHAAASC--GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
G D+ + L + K+ T L A G
Sbjct: 161 RQGVDIEAARKEEER---------IMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211
Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+++K LI+ D+NI ++ + L AA+ G
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG 243
Score = 166 bits (423), Expect = 8e-51
Identities = 48/212 (22%), Positives = 79/212 (37%), Gaps = 15/212 (7%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+ + G + ++ V + L A G + V L+E GAD+N
Sbjct: 13 QLKRWIG--SETDLEPPVVKRKKTKVKFDDGAVFLAACSS-GDTEEVLRLLERGADINYA 69
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
N + L A ++ ++K LV GA++N PL AA G LDI +YLI
Sbjct: 70 NVDGLTALHQACID--DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLIS 127
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGR 179
GA + N ++ L IA + +++ V G D+ +
Sbjct: 128 QGAHVGAVNSEGDTPLDIAEEE--AMEELLQNEVNRQGVDIE-------AARKEEERIML 178
Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
D ++L + + L +AA KG
Sbjct: 179 RDARQWLNSGHINDVRHAKSGGTALHVAAAKG 210
Score = 146 bits (370), Expect = 6e-43
Identities = 38/188 (20%), Positives = 75/188 (39%), Gaps = 6/188 (3%)
Query: 24 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 83
+ + Q + + G ++ + + + A G +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAV-FLAACSS--GDTEEVL 57
Query: 84 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 143
L+ GAD+N++ T L AC D +D+VK+L+E+GA++N ++ L AA
Sbjct: 58 RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC- 116
Query: 144 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI-EHGADLNITNHYNNS 202
G+L + + L+ GA V TPL A + ++++ + G D+
Sbjct: 117 -GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER 175
Query: 203 CLMIAAYK 210
++ A +
Sbjct: 176 IMLRDARQ 183
Score = 141 bits (357), Expect = 5e-41
Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 14/195 (7%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI-EHGADLNI 59
AA G +L + + L+ GA V TPL A + ++++ + G D+
Sbjct: 111 HAAASCG--YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168
Query: 60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
+ L + K+ T L A G +++K LI
Sbjct: 169 ARKEEER---------IMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
+ D+NI ++ + L AA+ G + LV D+ K T A D
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWG--KEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277
Query: 180 LDIVKYLIEHGADLN 194
+ + + +
Sbjct: 278 GYLEELQKKQNLLHS 292
Score = 121 bits (305), Expect = 3e-33
Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 14/169 (8%)
Query: 1 MIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
IA + +++ V G D+ + D ++L +
Sbjct: 144 DIAEEEA--MEELLQNEVNRQGVDIE-------AARKEEERIMLRDARQWLNSGHINDVR 194
Query: 60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
+ L +AA KG + V+K L+ A DVN TPL AA + G+ + + L+
Sbjct: 195 HAKSGGTALHVAAAKG--YTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS 168
E+ D+ N + +A G+L + + + +S
Sbjct: 253 ENLCDMEAVNKVGQTAFDVADEDILGYLEEL--QKKQNLLHSEKREKKS 299
Score = 42.1 bits (100), Expect = 7e-05
Identities = 4/52 (7%), Positives = 13/52 (25%), Gaps = 1/52 (1%)
Query: 160 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+ + Q + + G ++ + + + A G
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAV-FLAACSSG 51
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 171 bits (436), Expect = 4e-52
Identities = 53/234 (22%), Positives = 92/234 (39%), Gaps = 29/234 (12%)
Query: 1 MIAAYKGAGHLSVI--------KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 52
A K + AGADVN ++TPL A R +V YL++
Sbjct: 130 HWIASNS--SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK 187
Query: 53 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV---HAGADVNHSTKTQSTPLRAACYD 109
GAD I N S L AA ++ ++ D+ + T L ++
Sbjct: 188 AGADPTIYNKSERSALHQAAAN--RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 245
Query: 110 GRLD---IVKYLIEHGADLNIT--------NHYNNSCLMIAAYKGAGHLSVIKTLV-HAG 157
D K L+E GA ++ + + L AA ++ ++K LV G
Sbjct: 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV--SNMPIVKYLVGEKG 303
Query: 158 ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
++ + + TP+ A +GR+++V YLI+ GA + + +++ +A
Sbjct: 304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN 357
Score = 162 bits (411), Expect = 3e-48
Identities = 45/205 (21%), Positives = 83/205 (40%), Gaps = 17/205 (8%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH---GADL 57
M+A ++ L+ AGAD K++ + L A + ++ Y++ D+
Sbjct: 171 MLAVLAR--RRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 228
Query: 58 NITNHYNNSCLMIAAYKG-AGHLSVIKTLVHAGADVNHSTKTQS--------TPLRAACY 108
+ + LMI A+ ++ K LV GA V++ + T L A
Sbjct: 229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ 288
Query: 109 DGRLDIVKYLIEH-GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ 167
+ IVKYL+ G++ + + + +M+AA +G + V+ L+ GA V T
Sbjct: 289 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG--RIEVVMYLIQQGASVEAVDATD 346
Query: 168 STPLRAACYDGRLDIVKYLIEHGAD 192
T + A + +IV +
Sbjct: 347 HTARQLAQANNHHNIVDIFDRCRPE 371
Score = 156 bits (396), Expect = 5e-46
Identities = 43/225 (19%), Positives = 70/225 (31%), Gaps = 28/225 (12%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
G+ + L G I + + ++ +N + L
Sbjct: 72 GNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPR-HNRTVL 129
Query: 69 MIAAYKGAGHLSVI--------KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
A K + AGADVN ++TPL A R +V YL++
Sbjct: 130 HWIASN--SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK 187
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLV---HAGADVNHSTKTQSTPLRAACYD 177
GAD I N S L AA ++ ++ D+ + T L ++
Sbjct: 188 AGADPTIYNKSERSALHQAAAN--RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 245
Query: 178 GRLD---IVKYLIEHGADLNIT--------NHYNNSCLMIAAYKG 211
D K L+E GA ++ + + L AA
Sbjct: 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS 290
Score = 130 bits (328), Expect = 4e-36
Identities = 40/199 (20%), Positives = 59/199 (29%), Gaps = 23/199 (11%)
Query: 21 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80
+ S + L A YDG + + N HY+ G+
Sbjct: 27 NRKNHQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGN--GNDF 75
Query: 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 140
+ L G I + + ++ +N + L A
Sbjct: 76 LGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPR-HNRTVLHWIA 133
Query: 141 YKGAGHLSVI--------KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD 192
K + AGADVN ++TPL A R +V YL++ GAD
Sbjct: 134 SN--SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD 191
Query: 193 LNITNHYNNSCLMIAAYKG 211
I N S L AA
Sbjct: 192 PTIYNKSERSALHQAAANR 210
Score = 127 bits (321), Expect = 5e-35
Identities = 31/175 (17%), Positives = 68/175 (38%), Gaps = 21/175 (12%)
Query: 1 MIAAYKGAGHLSVIKTLV---HAGADVNHSTKTQSTPLRAACYDGRLD---IVKYLIEHG 54
AA ++ ++ D+ + T L ++ D K L+E G
Sbjct: 204 HQAAANR--DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG 261
Query: 55 ADLNIT--------NHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRA 105
A ++ + + L AA ++ ++K LV G++ + + TP+
Sbjct: 262 AKVDYDGAARKDSEKYKGRTALHYAAQVS--NMPIVKYLVGEKGSNKDKQDEDGKTPIML 319
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
A +GR+++V YLI+ GA + + +++ +A H +++ +
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN--HHNIVDIFDRCRPER 372
Score = 51.9 bits (125), Expect = 4e-08
Identities = 9/93 (9%), Positives = 21/93 (22%), Gaps = 11/93 (11%)
Query: 122 GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD 181
+ + + L+ A+Y G + N P +G
Sbjct: 27 NRKNHQSITSSQHSLLEASYDG-----------YIKRQRNELQHYSLYPNPQGYGNGNDF 75
Query: 182 IVKYLIEHGADLNITNHYNNSCLMIAAYKGIDV 214
+ + + + L A +
Sbjct: 76 LGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAI 108
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 160 bits (408), Expect = 5e-50
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 11/180 (6%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGA-DLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
+ C +G V+ +++ DLN + + S L A +G +V++ L+ GA
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREG--RSAVVEMLIMRGAR 64
Query: 92 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 151
+N + TPL A G DIV+ L+++ AD+N N + N L A + G V +
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG--QDQVAE 122
Query: 152 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
LV GA V+ K P+ A R + + + G +LN +KG
Sbjct: 123 DLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP------YKDTFWKG 176
Score = 145 bits (368), Expect = 5e-44
Identities = 41/181 (22%), Positives = 80/181 (44%), Gaps = 13/181 (7%)
Query: 1 MIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
+G + ++ + + D+N +PL AC +GR +V+ LI GA +N+
Sbjct: 10 FTQCREG--NAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67
Query: 60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
N +++ L +AA GH +++ L+ AD+N + + PL AC+ G+ + + L+
Sbjct: 68 MNRGDDTPLHLAASH--GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
+GA ++I N Y + A + + G ++N P + + G
Sbjct: 126 ANGALVSICNKYGEMPVDKAKAP--LRELLRERAEKMGQNLNR------IPYKDTFWKGT 177
Query: 180 L 180
Sbjct: 178 T 178
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 162 bits (412), Expect = 6e-50
Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 8/184 (4%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
L I HG + L+ ++ + G +++ +++ D
Sbjct: 7 VSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLAL-LLDSSLE--GEFDLVQRIIYEVDDP 63
Query: 93 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
+ T L A G +IVK+L++ G ++N + + L AA ++ V K
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC--NNVQVCKF 121
Query: 153 LVHAGADVNHSTK---TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAY 209
LV +GA V T + +G ++L + I N L
Sbjct: 122 LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEP 181
Query: 210 KGID 213
+ D
Sbjct: 182 QNDD 185
Score = 155 bits (393), Expect = 4e-47
Identities = 40/233 (17%), Positives = 72/233 (30%), Gaps = 16/233 (6%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+ G V L + +G D+V+ +I D ++
Sbjct: 10 PPGKRTN--LRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP 66
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
N + L A GH ++K LV G +VN + TPL A + + K+L+E
Sbjct: 67 NDEGITALHNAVCA--GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
Query: 121 HGADLNITNHYNNSC---LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD 177
GA + + + + G+ + L + K L
Sbjct: 125 SGAAVFAMTYSDMQTAADKCEEMEE--GYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ 182
Query: 178 GRLDIVKYLIEHGADLNITN--HYNNSCLMIAAYKGIDVGRVGPGLFDRYPSA 228
++ ++ G + I + + A + G V L YP
Sbjct: 183 NDDEL---PMKEGDCMTIIHREDEDEIEWWWARLNDKE-GYVPRNLLGLYPRI 231
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 159 bits (405), Expect = 9e-50
Identities = 56/170 (32%), Positives = 90/170 (52%), Gaps = 5/170 (2%)
Query: 21 GADVNHSTKTQ-STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL 79
G+ +H + L A GR D V+ L+ +GAD+N + + L +AA+ G HL
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG--HL 60
Query: 80 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 139
+++ L+ GADVN TPLR A G L+IV+ L+++GAD+N + ++ L +A
Sbjct: 61 EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120
Query: 140 AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
A GHL +++ L+ GADVN K T + +G D+ + L +
Sbjct: 121 AMF--GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 142 bits (360), Expect = 5e-43
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 5/160 (3%)
Query: 53 HGADLNITNHYN-NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 111
G+ + + + L+ AA G ++ L+ GADVN + TPL A ++G
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAG--RDDEVRILMANGADVNAEDASGWTPLHLAAFNGH 59
Query: 112 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 171
L+IV+ L+++GAD+N +H + L +AA G HL +++ L+ GADVN + TPL
Sbjct: 60 LEIVEVLLKNGADVNAVDHAGMTPLRLAALFG--HLEIVEVLLKNGADVNANDMEGHTPL 117
Query: 172 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
A G L+IV+ L+++GAD+N + + + I+ G
Sbjct: 118 HLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157
Score = 115 bits (292), Expect = 1e-32
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+AA+ G HL +++ L+ GADVN TPLR A G L+IV+ L+++GAD+N
Sbjct: 52 HLAAFNG--HLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN 109
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+ ++ L +AA GHL +++ L+ GADVN K T + +G D+ + L +
Sbjct: 110 DMEGHTPLHLAAMF--GHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Query: 121 H 121
Sbjct: 168 L 168
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 160 bits (406), Expect = 2e-49
Identities = 42/212 (19%), Positives = 74/212 (34%), Gaps = 12/212 (5%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
A Y L D+ + T T GR ++ +
Sbjct: 17 FRALYTF--EPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP-----SNYVAEQ 69
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
++ L AA +G +LS ++ + VN K ST L AC+ G DIV+ L
Sbjct: 70 AESIDNPLHEAAKRG--NLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT 127
Query: 121 H-GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
+LN N ++ L AA+KG + +++ L+ GA + + A
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKG--YADIVQLLLAKGARTDLRNIEKKLAFDMATNAAC 185
Query: 180 LDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
++K A ++N + + +
Sbjct: 186 ASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217
Score = 157 bits (400), Expect = 2e-48
Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 10/186 (5%)
Query: 28 TKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVH 87
K + A Y L D+ +++ KG +T +
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-------RTGLI 61
Query: 88 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL 147
V ++ PL A G L ++ +++ +N + ++ L A + G H
Sbjct: 62 PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG--HK 119
Query: 148 SVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206
+++ L ++N K T L AA + G DIV+ L+ GA ++ N +
Sbjct: 120 DIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM 179
Query: 207 AAYKGI 212
A
Sbjct: 180 ATNAAC 185
Score = 145 bits (367), Expect = 2e-43
Identities = 34/182 (18%), Positives = 63/182 (34%), Gaps = 12/182 (6%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
KG +T + V ++ PL A G L ++ +++ +N
Sbjct: 50 WKGTSKG-------RTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL 102
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
+ ++ L A + G H +++ L ++N K T L AA + G DIV+ L+
Sbjct: 103 DKAGSTALYWACHGG--HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
GA ++ N +A S++K A S + +
Sbjct: 161 AKGARTDLRNIEKKLAFDMATNAA--CASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218
Query: 180 LD 181
Sbjct: 219 HH 220
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 157 bits (399), Expect = 5e-48
Identities = 46/221 (20%), Positives = 80/221 (36%), Gaps = 13/221 (5%)
Query: 2 IAAYKG--AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
+A A + VI+ + A +N Q TPL A + +I + L+ G D +
Sbjct: 14 LAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL 73
Query: 60 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD------VNHSTKTQSTPLRAACYDGRLD 113
+ N+ L +A + G L+ + L + + + T L A G L
Sbjct: 74 RDFRGNTPLHLACEQ--GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG 131
Query: 114 IVKYLIEHGADLNITNHYN-NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLR 172
IV+ L+ GAD+N N + L +A + ++ L+ GADVN T +P +
Sbjct: 132 IVELLVSLGADVNAQEPCNGRTALHLAVDL--QNPDLVSLLLKCGADVNRVTYQGYSPYQ 189
Query: 173 AACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGID 213
I + L + + +
Sbjct: 190 LTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT 230
Score = 151 bits (385), Expect = 6e-46
Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 15/190 (7%)
Query: 33 TPLRAACYDGR----LDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA 88
+ L A +++++ + A LN N+ + L +A + + L+ A
Sbjct: 10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT--NQPEIAEALLGA 67
Query: 89 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD------LNITNHYNNSCLMIAAYK 142
G D +TPL AC G L V L + L TN+ ++CL +A+
Sbjct: 68 GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 127
Query: 143 GAGHLSVIKTLVHAGADVNHSTKTQ-STPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 201
G+L +++ LV GADVN T L A D+V L++ GAD+N +
Sbjct: 128 --GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY 185
Query: 202 SCLMIAAYKG 211
S + +
Sbjct: 186 SPYQLTWGRP 195
Score = 138 bits (350), Expect = 1e-40
Identities = 41/190 (21%), Positives = 67/190 (35%), Gaps = 13/190 (6%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGAD---- 56
+A + + L+ AG D +TPL AC G L V L +
Sbjct: 50 HLAVITN--QPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107
Query: 57 --LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ-STPLRAACYDGRLD 113
L TN+ ++CL +A+ G +L +++ LV GADVN T L A D
Sbjct: 108 SILKATNYNGHTCLHLASIHG--YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 114 IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA 173
+V L++ GAD+N + S + + + + L +
Sbjct: 166 LVSLLLKCGADVNRVTYQGYSPYQLTWGRP--STRIQQQLGQLTLENLQMLPESEDEESY 223
Query: 174 ACYDGRLDIV 183
+
Sbjct: 224 DTESEFTEFT 233
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 154 bits (391), Expect = 1e-47
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 6/160 (3%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
L +A G L+ + L+++ ++N N + + L + G+ + + L+ GA+
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL---GNPEIARRLLLRGANP 63
Query: 93 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
+ +T + A G LD ++ L+E AD+NI ++ N L +AA + GHL V++
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE--GHLRVVEF 121
Query: 153 LVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
LV A +V H T A GR ++V + +GA
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 114 bits (289), Expect = 2e-32
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+ G+ + + L+ GA+ + +T + A G LD ++ L+E AD+NI
Sbjct: 43 QVMKL---GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE 99
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGA-DVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
++ N L +AA + GHL V++ LV A +V H T A GR ++V +
Sbjct: 100 DNEGNLPLHLAAKE--GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Query: 120 EHGA 123
+GA
Sbjct: 158 ANGA 161
Score = 113 bits (285), Expect = 8e-32
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
L +A G L+ + L+++ ++N N + + L + G+ + + L+ GA+
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL---GNPEIARRLLLRGANP 63
Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+ +T + A G LD ++ L+E AD+NI ++ N L +AA +G
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Score = 51.2 bits (124), Expect = 2e-08
Identities = 8/46 (17%), Positives = 21/46 (45%)
Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDV 214
L +A G L+ + L+++ ++N N + + L + ++
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEI 52
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 154 bits (392), Expect = 4e-47
Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 7/202 (3%)
Query: 14 IKTLVHAGADVNHSTK---TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 70
+++++ + + L A G L++V+ ++ D + N + L
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 71 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 130
A + S++ L+ AGA+VN TPL A I L++HGA + T
Sbjct: 61 AICG--ANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118
Query: 131 YN-NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
+ + G+ L + L + D + +
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF-GDELSFREGE 177
Query: 190 GADLNITNHYNNSCLMIAAYKG 211
+ + + AA G
Sbjct: 178 SVTVLRRDGPEETDWWWAALHG 199
Score = 137 bits (347), Expect = 2e-40
Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 10/174 (5%)
Query: 47 VKYLIEHGADLNITNHYNNS---CLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 103
++ ++ + L+ AA G L V++ V D + + T L
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTG--ELEVVQQAVKEMNDPSQPNEEGITAL 58
Query: 104 RAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHS 163
A IV +LI GA++N + + + L AA + LV GA + +
Sbjct: 59 HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN--DTVICMALVQHGAAIFAT 116
Query: 164 T-KTQSTPLRAA--CYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDV 214
T +T +G D YL + + + N L + + D
Sbjct: 117 TLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE 170
Score = 137 bits (346), Expect = 4e-40
Identities = 38/186 (20%), Positives = 61/186 (32%), Gaps = 10/186 (5%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+ AA G L V++ V D + + T L A IV +LI GA++N
Sbjct: 26 LDAALTG--ELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP 83
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAA--CYDGRLDIVKY 117
+ + + L AA + LV GA + +T +T +G D Y
Sbjct: 84 DSHGWTPLHCAASC--NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATY 141
Query: 118 LIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYD 177
L + + + N L + A + V + T A
Sbjct: 142 LADVEQSMGLMNSGAVYALWDYS---AEFGDELSFREGESVTVLRRDGPEETDWWWAALH 198
Query: 178 GRLDIV 183
G+ V
Sbjct: 199 GQEGYV 204
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 150 bits (381), Expect = 8e-46
Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 12/191 (6%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
I K N+ TPL AC G + + L+E+ L
Sbjct: 13 KIKDEKSINQN--------LDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK 64
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+ ++ L+ A L + + L+ G++VN + TPL + G ++ +L+E
Sbjct: 65 DIEGSTALIWAVKNN--RLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLE 122
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
HGA++N N + L++A+ G ++K L+ GAD++ T T +A GR
Sbjct: 123 HGANVNDRNLEGETPLIVASKY--GRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180
Query: 181 DIVKYLIEHGA 191
+++K E
Sbjct: 181 EVIKIFTEVRR 191
Score = 140 bits (355), Expect = 6e-42
Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 17/193 (8%)
Query: 21 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL--NITNHYNNSCLMIAAYKGAGH 78
G+ ++ + + + + I D N + YN + LM+A G
Sbjct: 1 GSHMDKNGEI---VEKIK--------DEKSINQNLDFLRNYRDSYNRTPLMVACMLG--M 47
Query: 79 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
+ I LV + ST L A + RL I + L+ G+++N + + LM
Sbjct: 48 ENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW 107
Query: 139 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 198
+ G + + L+ GA+VN TPL A GR +IVK L+E GAD++ +
Sbjct: 108 SIIFG--YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165
Query: 199 YNNSCLMIAAYKG 211
+ A G
Sbjct: 166 TGLTAEASARIFG 178
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 146 bits (370), Expect = 1e-44
Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 13/165 (7%)
Query: 20 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL 79
A + + + L A GR++ V+ L+E GA+ N N Y + + G
Sbjct: 3 PAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM---GSA 57
Query: 80 SVIKTLVHAGADVNHSTKTQST-PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
V + L+ GA+ N + T P+ A +G LD + L GA L++ + + + +
Sbjct: 58 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117
Query: 139 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIV 183
A GH V + L A S R +G DI
Sbjct: 118 AEEL--GHRDVARYLRAAAGGTR-----GSNHARIDAAEGPSDIP 155
Score = 129 bits (326), Expect = 5e-38
Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
AA +G + ++ L+ AGA+ N P++ G + + L+ HGA+ N
Sbjct: 17 ATAAARG--RVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCA 73
Query: 61 NHYNNSC-LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
+ + + AA +G L + L AGA ++ P+ A G D+ +YL
Sbjct: 74 DPATLTRPVHDAAREG--FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 131
Query: 120 EHGADLNITNHYNNSCLMIAAYKGA 144
+NH I A +G
Sbjct: 132 AAAGGTRGSNH-----ARIDAAEGP 151
Score = 57.1 bits (139), Expect = 1e-10
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 156 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDV 214
A + + + L A GR++ V+ L+E GA+ N N Y + + V
Sbjct: 3 PAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARV 59
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 144 bits (366), Expect = 4e-44
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 7/158 (4%)
Query: 33 TPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
L A G + V+ L+ + N + + L + + G ++ L+ GA
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF---GSTAIALELLKQGAS 60
Query: 92 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 151
N + ++P+ A G LD +K L+EHGAD+N+ + + +A + GH +V+
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE--GHTAVVS 118
Query: 152 TLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEH 189
L +D++ TPL A G D+V L H
Sbjct: 119 FLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 122 bits (309), Expect = 2e-35
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 7/145 (4%)
Query: 68 LMIAAYKGAGHLSVIKTLVHA-GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 126
L AA +G + ++ L+H + + T L+ + G I L++ GA N
Sbjct: 6 LSGAAARG--DVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN 62
Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
+ + S + AA G L +K LV GADVN T + P+ A +G +V +L
Sbjct: 63 VQDTSGTSPVHDAARTG--FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
Query: 187 IEHGADLNITNHYNNSCLMIAAYKG 211
+DL+ + + L +A +G
Sbjct: 121 AAE-SDLHRRDARGLTPLELALQRG 144
Score = 115 bits (291), Expect = 1e-32
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+ + G ++ L+ GA N + ++P+ A G LD +K L+EHGAD+N+
Sbjct: 41 QVMMF---GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP 97
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+ + +A + GH +V+ L +D++ TPL A G D+V L
Sbjct: 98 DGTGALPIHLAVQE--GHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Query: 121 H 121
H
Sbjct: 155 H 155
Score = 105 bits (265), Expect = 7e-29
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 101 TPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 159
L A G + V+ L+ + N + + L + + G ++ L+ GA
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF---GSTAIALELLKQGAS 60
Query: 160 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
N + ++P+ A G LD +K L+EHGAD+N+ + + +A +G
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 112
Score = 41.2 bits (98), Expect = 5e-05
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 169 TPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGIDV 214
L A G + V+ L+ + N + + L + + +
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAI 50
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 146 bits (372), Expect = 6e-44
Identities = 38/235 (16%), Positives = 70/235 (29%), Gaps = 35/235 (14%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+I G H + ADV + TP A + L+ D++
Sbjct: 20 LIEWKDG--HSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQALSQLL-EDRDVDAV 73
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH-STKTQSTPLRAACYDGRLDIVKYLI 119
+ + L+ A G ++ L AGAD++H + T L A R ++V+ L+
Sbjct: 74 DENGRTALLFVAGL--GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ------------ 167
E GAD+ + + + L +A + + G +
Sbjct: 132 ELGADIEVEDERGLTALELAREI--LKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEV 189
Query: 168 ----------STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGI 212
+ D H A+ + L A + +
Sbjct: 190 DEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESV 242
Score = 139 bits (353), Expect = 5e-41
Identities = 34/195 (17%), Positives = 58/195 (29%), Gaps = 12/195 (6%)
Query: 19 HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH 78
+ + + DG AD+ + AA K
Sbjct: 3 VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKA--D 57
Query: 79 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS-CLM 137
+ L+ DV+ + T L G V+ L E GADL+ + L
Sbjct: 58 EQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 116
Query: 138 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 197
+AA V++ LV GAD+ + T L A + ++ G + +
Sbjct: 117 MAAGYV--RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 174
Query: 198 HYNNSCLMIAAYKGI 212
N ++
Sbjct: 175 VIN---VLEGQVFEY 186
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 146 bits (369), Expect = 1e-43
Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 5/206 (2%)
Query: 3 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 62
AY G + + ++ + + + T L AC G +IV++L++ G +N +
Sbjct: 13 LAYSG-KLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 63 YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG 122
S L IAA G ++K L+ GA VN + TPL A R +I L+E G
Sbjct: 72 AGWSPLHIAASA--GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 123 ADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDI 182
A+ + +HY+ + + AA K G+L ++ L+ A N +TPL AC + R++
Sbjct: 130 ANPDAKDHYDATAMHRAAAK--GNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE 187
Query: 183 VKYLIEHGADLNITNHYNNSCLMIAA 208
K+L+ GA + I N + L +A
Sbjct: 188 AKFLVTQGASIYIENKEEKTPLQVAK 213
Score = 136 bits (345), Expect = 4e-40
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 8/195 (4%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
A G H +++ L+ G VN +PL A G +IVK L+ GA +N
Sbjct: 45 HWACSAG--HTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
N + L AA K + L+ GA+ + +T + A G L +V L+
Sbjct: 103 NQNGCTPLHYAASKN--RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRL 180
+ A NI + N+ L +A + + K LV GA + K + TPL+ A G L
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEE--RVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGL 216
Query: 181 DIVKYLIEHGADLNI 195
++ + G + ++
Sbjct: 217 GLILKRLAEGEEASM 231
Score = 133 bits (335), Expect = 1e-38
Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 4/179 (2%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
A ++ + ++ + T+ + + L A G H +++ L+ G V
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG--HTEIVEFLLQLGVPV 66
Query: 93 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
N +PL A G +IVK L+ GA +N N + L AA K +
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN--RHEIAVM 124
Query: 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
L+ GA+ + +T + A G L +V L+ + A NI + N+ L +A +
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 142 bits (360), Expect = 2e-43
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 6/141 (4%)
Query: 20 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL 79
++ + L A G+++ V+ L+E GAD N N + + + G
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM---GSA 57
Query: 80 SVIKTLVHAGADVNHSTKTQST-PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
V + L+ GA+ N + T P+ A +G LD + L GA L++ + + + +
Sbjct: 58 QVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117
Query: 139 AAYKGAGHLSVIKTLVHAGAD 159
A + GH + + L A D
Sbjct: 118 AEEQ--GHRDIARYLHAATGD 136
Score = 129 bits (327), Expect = 2e-38
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 88 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL 147
++ + L A G+++ V+ L+E GAD N N + + + G
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM---GSA 57
Query: 148 SVIKTLVHAGADVNHSTKTQST-PLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206
V + L+ GA+ N + T P+ A +G LD + L GA L++ + + + +
Sbjct: 58 QVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117
Query: 207 AAYKG 211
A +G
Sbjct: 118 AEEQG 122
Score = 125 bits (317), Expect = 7e-37
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
AA +G + ++ L+ AGAD N + P++ G + + L+ HGA+ N
Sbjct: 17 ATAAARG--QVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA 73
Query: 61 NHYNNSC-LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 119
+ + + AA + G L + L AGA ++ P+ A G DI +YL
Sbjct: 74 DPATLTRPVHDAARE--GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLH 131
Query: 120 EHGAD 124
D
Sbjct: 132 AATGD 136
Score = 65.9 bits (162), Expect = 5e-14
Identities = 12/59 (20%), Positives = 23/59 (38%)
Query: 156 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDV 214
++ + L A G+++ V+ L+E GAD N N + + + V
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQV 59
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 142 bits (361), Expect = 6e-43
Identities = 33/175 (18%), Positives = 54/175 (30%), Gaps = 9/175 (5%)
Query: 21 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80
+ + + DG AD+ + AA K
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKA--DEQ 58
Query: 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS-CLMIA 139
+ L+ DV+ + T L G V+ L E GADL+ + L +A
Sbjct: 59 ALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117
Query: 140 AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLN 194
A V++ LV GAD+ + T L A + ++ G +
Sbjct: 118 AGYV--RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 170
Score = 135 bits (342), Expect = 4e-40
Identities = 34/190 (17%), Positives = 63/190 (33%), Gaps = 28/190 (14%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+I G H + ADV +T P A + L+ D++
Sbjct: 19 LIEWKDG--HSPSWVPSSYIAADVVSEYET---PWWTAARKADEQALSQLL-EDRDVDAV 72
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNH-STKTQSTPLRAACYDGRLDIVKYLI 119
+ + L+ A G ++ L AGAD++H + T L A R ++V+ L+
Sbjct: 73 DENGRTALLFVAGLG--SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130
Query: 120 EHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGR 179
E GAD+ + + + L +A + + G +
Sbjct: 131 ELGADIEVEDERGLTALELAREIL--KTTPKGNPMQFGRRIGL----------------- 171
Query: 180 LDIVKYLIEH 189
++ L
Sbjct: 172 EKVINVLEGQ 181
Score = 98.3 bits (246), Expect = 9e-26
Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 7/124 (5%)
Query: 89 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 148
+ + + DG AD+ + AA K
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKA--DEQ 58
Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS-CLMIA 207
+ L+ DV+ + T L G V+ L E GADL+ + L +A
Sbjct: 59 ALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117
Query: 208 AYKG 211
A
Sbjct: 118 AGYV 121
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 139 bits (353), Expect = 5e-42
Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 9/172 (5%)
Query: 21 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGAGHL 79
GA N L A G ++ VK L + ++ L AA +
Sbjct: 1 GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYN--RV 55
Query: 80 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 139
SV++ L+ GADV+ K PL AC G ++ + L++HGA +N+ + + + L A
Sbjct: 56 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 115
Query: 140 AYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
A K G + K L+ GAD + +TPL G DI L A
Sbjct: 116 AAK--GKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 125 bits (317), Expect = 2e-36
Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 8/158 (5%)
Query: 2 IAAYKGAGHLSVIKTLV-HAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
AA G + +K L + QSTPL A R+ +V+YL++HGAD++
Sbjct: 14 EAAKAG--DVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+ L A GH V + LV GA VN + + TPL A G+ +I K L++
Sbjct: 72 DKGGLVPLHNACSY--GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158
HGAD N N+ L + G + L A
Sbjct: 130 HGADPTKKNRDGNTPLDLVKD---GDTDIQDLLRGDAA 164
Score = 107 bits (270), Expect = 2e-29
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
AA +SV++ L+ GADV+ K PL AC G ++ + L++HGA +N+
Sbjct: 47 HFAAGYN--RVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 104
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+ + + L AA K G + K L+ GAD + +TPL G DI L
Sbjct: 105 DLWKFTPLHEAAAK--GKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRG 161
Query: 121 HGA 123
A
Sbjct: 162 DAA 164
Score = 101 bits (255), Expect = 3e-27
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 89 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIE-HGADLNITNHYNNSCLMIAAYKGAGHL 147
GA N L A G ++ VK L + ++ L AA +
Sbjct: 1 GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYN--RV 55
Query: 148 SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
SV++ L+ GADV+ K PL AC G ++ + L++HGA +N+ + + + L A
Sbjct: 56 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 115
Query: 208 AYKG 211
A KG
Sbjct: 116 AAKG 119
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 140 bits (354), Expect = 2e-41
Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 31/227 (13%)
Query: 2 IAAYKGAGHL-SVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL--- 57
+AA + + ++ K L G +V+ T L A L+ L+E +L
Sbjct: 9 LAAKEN--DVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66
Query: 58 --NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-------------TP 102
+ + L IA ++++++ L+ GA V+ P
Sbjct: 67 PMTSELYEGQTALHIAVIN--QNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG--AGHLSVIKTLVHAGADV 160
L A G +IV+ LIEHGAD+ + N+ L I + + L+
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184
Query: 161 NHSTKTQS------TPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 201
+ + TP + A +G + + ++L++ + +H+++
Sbjct: 185 HLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 113 bits (285), Expect = 4e-31
Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 30/185 (16%)
Query: 33 TPLRAACYDGRLDIV-KYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
+PL A + + + K L G +++ + L IAA +L L+ A +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYD--NLEAAMVLMEAAPE 62
Query: 92 V-----NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGH 146
+ T L A + +++V+ L+ GA ++ + G
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG- 121
Query: 147 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206
PL A G +IV+ LIEHGAD+ + N+ L I
Sbjct: 122 ---------------------EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
Query: 207 AAYKG 211
+
Sbjct: 161 LILQP 165
Score = 98.8 bits (247), Expect = 1e-25
Identities = 29/154 (18%), Positives = 60/154 (38%), Gaps = 23/154 (14%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS-------------TPLRAACYDGRLDIV 47
IA ++++++ L+ GA V+ PL A G +IV
Sbjct: 80 HIAVINQ--NVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIV 137
Query: 48 KYLIEHGADLNITNHYNNSCLMIAAYKG--AGHLSVIKTLVHAGADVNHSTKTQS----- 100
+ LIEHGAD+ + N+ L I + + L+ + +
Sbjct: 138 RLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQG 197
Query: 101 -TPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 133
TP + A +G + + ++L++ + +H+++
Sbjct: 198 LTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 135 bits (342), Expect = 2e-40
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
L A G+ D V+ L+ +GA T+ S L +AA G H S + L+ AG
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYG--HFSTTEVLLRAGVSR 60
Query: 93 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKT 152
+ TK TPL A +G +IV+ L++HGAD+N + + L A H V++
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH--NHQEVVEL 118
Query: 153 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
L+ GADV+ +K T + +G D+ + L
Sbjct: 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 119 bits (302), Expect = 2e-34
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+ AA G ++ L+ GA + ++PL A G + L+ G +
Sbjct: 7 LEAARAG--QDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+ + L +AA + GH ++++ L+ GADVN + T L A ++V+ LI+
Sbjct: 64 TKVDRTPLHMAASE--GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Query: 121 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKTL 153
+GAD++ + + + I+ G+ + + L
Sbjct: 122 YGADVHTQSKFCKTAFDISIDN--GNEDLAEIL 152
Score = 104 bits (263), Expect = 1e-28
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
L A G+ D V+ L+ +GA T+ S L +AA G H S + L+ AG
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYG--HFSTTEVLLRAGVSR 60
Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
+ TK TPL A +G +IV+ L++HGAD+N + + L A
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN 111
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 135 bits (343), Expect = 3e-40
Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 18/184 (9%)
Query: 29 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA--GHLSVIKTLV 86
++ + AA G + L E G + + +N L + L+
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNI-LYDVLRNNNDEARYKISMFLI 62
Query: 87 HAGADVNHSTKTQSTPLRAACYDGRLDI------VKYLIEHGADLNITNHYNNSCLMIAA 140
+ GAD+ TK +T G DI K +E GAD+ +
Sbjct: 63 NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122
Query: 141 YKGAGHLSVIKT-------LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADL 193
+ + + +G + K T L + +K + ++
Sbjct: 123 FN--YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180
Query: 194 NITN 197
N+
Sbjct: 181 NLKE 184
Score = 107 bits (269), Expect = 3e-29
Identities = 21/144 (14%), Positives = 40/144 (27%), Gaps = 17/144 (11%)
Query: 1 MIAAYKGA--GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDI------VKYLIE 52
+ L++ GAD+ TK +T G DI K +E
Sbjct: 43 YDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE 102
Query: 53 HGADLNITNHYNNSCLMIAAYKGAGHLSVIKT-------LVHAGADVNHSTKTQSTPLRA 105
GAD+ + + + + +G + K T L
Sbjct: 103 KGADITALYKPYKIVVFKNIFNY--FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160
Query: 106 ACYDGRLDIVKYLIEHGADLNITN 129
+ +K + ++ N+
Sbjct: 161 VKRCQKPIALKMMEDYIKKYNLKE 184
Score = 67.4 bits (165), Expect = 5e-14
Identities = 17/115 (14%), Positives = 29/115 (25%), Gaps = 32/115 (27%)
Query: 97 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHA 156
++ + AA G + L E G + + +N +
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSN----------ILY---------- 43
Query: 157 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
LR + R I +LI GAD+ + G
Sbjct: 44 ------------DVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG 86
Score = 37.7 bits (88), Expect = 0.001
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 165 KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGIDVGRV 217
++ + AA G + L E G + + +N L D R
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNI-LYDVLRNNNDEARY 55
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 128 bits (325), Expect = 3e-38
Identities = 58/124 (46%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA G HL V+K L+ AGADVN K TPL A +G L++VK L+E GAD+N
Sbjct: 6 LHLAARNG--HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLI 187
+ + L +AA GHL V+K L+ AGADVN K TPL A +G L++VK L+
Sbjct: 64 KDKNGRTPLHLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 188 EHGA 191
E GA
Sbjct: 122 EAGA 125
Score = 126 bits (319), Expect = 2e-37
Identities = 57/123 (46%), Positives = 74/123 (60%), Gaps = 4/123 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+AA G HL V+K L+ AGADVN K TPL A +G L++VK L+E GAD+N
Sbjct: 7 HLAARNG--HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+ + L +AA GHL V+K L+ AGADVN K TPL A +G L++VK L+E
Sbjct: 65 DKNGRTPLHLAARN--GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Query: 121 HGA 123
GA
Sbjct: 123 AGA 125
Score = 116 bits (293), Expect = 2e-33
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
TPL A +G L++VK L+E GAD+N + + L +AA G HL V+K L+ AGADV
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HLEVVKLLLEAGADV 61
Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
N K TPL A +G L++VK L+E GAD+N + + L +AA G
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 126 bits (319), Expect = 3e-37
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 54 GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD 113
G D TNH + L IA+ KG + ++ L+ G+D N TPL AC G L
Sbjct: 1 GIDPF-TNHRGETLLHIASIKG--DIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLK 57
Query: 114 IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA 173
+V+ L++H A +N T + N+S L AA GH+ ++K L+ GA N P+
Sbjct: 58 VVELLLQHKALVNTTGYQNDSPLHDAAKN--GHVDIVKLLLSYGASRNAVNIFGLRPVDY 115
Query: 174 ACYDGRLDIVKYLIEHGAD 192
+ ++ ++ +
Sbjct: 116 TDDESMKSLLLLPEKNESS 134
Score = 118 bits (299), Expect = 3e-34
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 89 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 148
G D + T L A G + V+YL+++G+D N+ +H + L A G HL
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG--HLK 57
Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 208
V++ L+ A VN + +PL A +G +DIVK L+ +GA N N + +
Sbjct: 58 VVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117
Query: 209 YKG 211
+
Sbjct: 118 DES 120
Score = 117 bits (297), Expect = 5e-34
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
IA+ KG + ++ L+ G+D N TPL AC G L +V+ L++H A +N T
Sbjct: 15 HIASIKG--DIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+ N+S L AA GH+ ++K L+ GA N P+ + ++ +
Sbjct: 73 GYQNDSPLHDAAKN--GHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130
Query: 121 HGAD 124
+ +
Sbjct: 131 NESS 134
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 124 bits (313), Expect = 2e-36
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 32 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 91
A +G LD VK + G D+N T L AA G L +++ L+ GAD
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC--GQLEILEFLLLKGAD 65
Query: 92 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIK 151
+N K TPL +A Y+G + VK L+ GAD + + + ++++
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ--AIKALLQ 123
Score = 122 bits (308), Expect = 9e-36
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Query: 100 STPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 159
A +G LD VK + G D+N T L AA G L +++ L+ GAD
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG--QLEILEFLLLKGAD 65
Query: 160 VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGI 212
+N K TPL +A Y+G + VK L+ GAD + + + I
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAI 118
Score = 115 bits (292), Expect = 2e-33
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
M A G L +K V G DVN + + PL A G+L+I+++L+ GAD+N
Sbjct: 11 FMWALKNG--DLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 184
+ ++ + L+ A Y+ GH+S +K L+ GAD T A +++
Sbjct: 69 PDKHHITPLLSAVYE--GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 113 bits (286), Expect = 2e-32
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
M A G L +K V G DVN + + PL A G+L+I+++L+ GAD+N
Sbjct: 12 MWALKNG--DLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 116
+ ++ + L+ A Y+ GH+S +K L+ GAD T A +++
Sbjct: 70 DKHHITPLLSAVYE--GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 126 bits (318), Expect = 8e-35
Identities = 36/245 (14%), Positives = 64/245 (26%), Gaps = 45/245 (18%)
Query: 1 MIAAYKG-AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 59
+AA G + L + L+ + V R A +G L ++ L E +
Sbjct: 97 FVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 156
Query: 60 TNHYNN--SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS---TPLRAACYDGRLDI 114
+AA GHL V+ L + AA G ++
Sbjct: 157 AMIQAENYHAFRLAAEN--GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV 214
Query: 115 VKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN------------- 161
+ +L++ L + G V + +
Sbjct: 215 INFLLDCPVMLAYAEIHEFE---------YGEKYVNPFIARHVNRLKEMHDAFKLSNPDG 265
Query: 162 -------HSTKTQSTPLRAACY---DGRLDIVKYLI-----EHGADLNITNHYNNSCLMI 206
LR + LD +++L+ + A N L +
Sbjct: 266 VFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL 325
Query: 207 AAYKG 211
A G
Sbjct: 326 ALRLG 330
Score = 125 bits (314), Expect = 4e-34
Identities = 31/215 (14%), Positives = 59/215 (27%), Gaps = 19/215 (8%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
++ Y + + + L ++ LD + L+ + +
Sbjct: 66 LLCLYYAHYNRNAKQ-LWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI 124
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS--TPLRAACYDGRLDIVKYL 118
N +AA GHL V+ L + R A +G L ++ L
Sbjct: 125 QAENYQAFRLAAEN--GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 182
Query: 119 IEHGADLNITN--HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY 176
E N AA GH +VI L+ + ++
Sbjct: 183 CELAPTEATAMIQAENYYAFRWAAVGR-GHHNVINFLLDCPVMLAYA-------EIHEFE 234
Query: 177 DGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
G + ++ H L + ++ G
Sbjct: 235 YGEKYVNPFIARHVNRLK----EMHDAFKLSNPDG 265
Score = 120 bits (302), Expect = 2e-32
Identities = 40/241 (16%), Positives = 62/241 (25%), Gaps = 43/241 (17%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS--TPLRAACYDGRLDIVKYLIEHGADLN 58
+AA G HL V+ L + R A +G L ++ L E
Sbjct: 133 RLAAENG--HLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 190
Query: 59 ITN--HYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVK 116
N AA GH +VI L+ + ++ G +
Sbjct: 191 TAMIQAENYYAFRWAAVGR-GHHNVINFLLDCPVMLAYA-------EIHEFEYGEKYVNP 242
Query: 117 YLIEHGADLNITN--------------------HYNNSCLMIAAYKGA-GHLSVIKTLVH 155
++ H L + L + L I+ L+
Sbjct: 243 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS 302
Query: 156 -----AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYK 210
A A + LR A G L+ + L +T N I
Sbjct: 303 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN---YYINETG 359
Query: 211 G 211
G
Sbjct: 360 G 360
Score = 119 bits (300), Expect = 3e-32
Identities = 31/211 (14%), Positives = 56/211 (26%), Gaps = 16/211 (7%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
+ I + ++ + L Y K L I +
Sbjct: 45 SYKEAIHIFLPGTKNMEQVRQ-----LLCLYYAHYNRNAKQLWSDAHKKGIKSEV---IC 96
Query: 69 MIAAYKG-AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
+AA G + L + L+ + V R A +G L ++ L E +
Sbjct: 97 FVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 156
Query: 128 TNHYNN--SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS---TPLRAACYDGRLDI 182
+AA GHL V+ L + AA G ++
Sbjct: 157 AMIQAENYHAFRLAAEN--GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV 214
Query: 183 VKYLIEHGADLNITNHYNNSCLMIAAYKGID 213
+ +L++ L + I
Sbjct: 215 INFLLDCPVMLAYAEIHEFEYGEKYVNPFIA 245
Score = 98.9 bits (246), Expect = 2e-24
Identities = 32/222 (14%), Positives = 59/222 (26%), Gaps = 47/222 (21%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQS---TPLRAACYDGRLDIVKYLIEHGADL 57
+AA G HL V+ L + AA G +++ +L++ L
Sbjct: 168 RLAAENG--HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 225
Query: 58 NITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN--------------------HSTK 97
+ G V + +
Sbjct: 226 AYAEIHEFE---------YGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 276
Query: 98 TQSTPLRAACY---DGRLDIVKYLI-----EHGADLNITNHYNNSCLMIAAYKGAGHLSV 149
LR + LD +++L+ + A N L +A G +
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG--NQGA 334
Query: 150 IKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
L+ + + T++ GRLD+ +EH
Sbjct: 335 CALLLSIPSVLA---LTKANNYYINETGGRLDLRAVALEHHH 373
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 122 bits (308), Expect = 3e-34
Identities = 45/233 (19%), Positives = 75/233 (32%), Gaps = 46/233 (19%)
Query: 13 VIKTLVHAGADVNHSTKTQSTPLRAA---CYDGRLDIVKYLIEHG-----------ADLN 58
+ + T T L A DG + L++ A
Sbjct: 25 LRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84
Query: 59 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN-------------HSTKTQSTPLRA 105
+ +S L IA K L +K LV GADV+ PL
Sbjct: 85 DEFYQGHSALHIAIEKR--SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSL 142
Query: 106 ACYDGRLDIVKYLIEHG---ADLNITNHYNNSCLMIAAYKGA--------------GHLS 148
A + D+V YL+E+ A L T+ N+ L G L
Sbjct: 143 AACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ 202
Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 201
+ L S TPL+ A +G+++I +++++ +H+++
Sbjct: 203 MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255
Score = 99.1 bits (247), Expect = 3e-25
Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 32/163 (19%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVN-------------HSTKTQSTPLRAACYDGRLDIV 47
IA K L +K LV GADV+ PL A + D+V
Sbjct: 95 HIAIEKR--SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152
Query: 48 KYLIEHG---ADLNITNHYNNSCLMIAAYKGA--------------GHLSVIKTLVHAGA 90
YL+E+ A L T+ N+ L G L + L
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ 212
Query: 91 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 133
S TPL+ A +G+++I +++++ +H+++
Sbjct: 213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255
Score = 81.0 bits (200), Expect = 1e-18
Identities = 40/219 (18%), Positives = 61/219 (27%), Gaps = 61/219 (27%)
Query: 33 TPLRAACYDGRLDIVKYLIEH--------GADLNITNHYNNSCLMIAAYKG-AGHLSVIK 83
L + G + + L+E+ +CLM A G + I
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 84 TLVHAG-----------ADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN 132
L+ A + L A L VK L+E+GAD+++
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123
Query: 133 NSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHG-- 190
G PL A + D+V YL+E+
Sbjct: 124 FFQKHQGTCFYFG----------------------ELPLSLAACTKQWDVVTYLLENPHQ 161
Query: 191 -ADLNITNHY----------------NNSCLMIAAYKGI 212
A L T+ NS L+I Y G+
Sbjct: 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGL 200
Score = 61.3 bits (149), Expect = 1e-11
Identities = 27/171 (15%), Positives = 42/171 (24%), Gaps = 46/171 (26%)
Query: 63 YNNSCLMIAAYKG-----AGHLS-VIKTLVHAGADVNHSTKTQSTPLRAA---CYDGRLD 113
++ L +G G L + + T T L A DG
Sbjct: 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60
Query: 114 IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRA 173
+ L++ D N A + L
Sbjct: 61 CIMPLLQIDKDSGNPKPLVN------------------------AQCTDEFYQGHSALHI 96
Query: 174 ACYDGRLDIVKYLIEHGADLNITNHYNNSC-------------LMIAAYKG 211
A L VK L+E+GAD+++ L +AA
Sbjct: 97 AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK 147
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 119 bits (299), Expect = 9e-33
Identities = 43/260 (16%), Positives = 83/260 (31%), Gaps = 60/260 (23%)
Query: 3 AAYKG-----AGHLSVIKTLVHAGADVNHS-TKTQSTPLRAA---CYDGRLDIVKYLIEH 53
A + L ++ D +T T L A ++G+ D + L++
Sbjct: 20 AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79
Query: 54 GADLNITNHYNN-----------SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ--- 99
+ + N + L IA + +++++ LV GADV +
Sbjct: 80 ARKTDSLKQFVNASYTDSYYKGQTALHIAIERR--NMTLVTLLVENGADVQAAANGDFFK 137
Query: 100 -----------STPLRAACYDGRLDIVKYLIEHG---ADLNITNHYNNSCLMIAAYKG-- 143
PL A +L IVK+L+++ AD++ + N+ L
Sbjct: 138 KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADN 197
Query: 144 ------------AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
L + L + + TPL A G++ ++ Y+++
Sbjct: 198 TVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257
Query: 192 DLNITNHYNNSCLMIAAYKG 211
C AA+
Sbjct: 258 H-------EPECRHAAAHHH 270
Score = 100 bits (251), Expect = 8e-26
Identities = 40/245 (16%), Positives = 69/245 (28%), Gaps = 55/245 (22%)
Query: 20 AGADVNHSTKTQSTPLRAACYDGR-------LDIVKYLIEHGADLNITNHYN-NSCLMIA 71
A + A L ++ + D + +CL+ A
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 72 AYKG-AGHLSVIKTLVHAGADVNHSTKTQ-----------STPLRAACYDGRLDIVKYLI 119
G I L+ + + T L A + +V L+
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121
Query: 120 EHGADLNITNHYNNSC--------------LMIAAYKGAGHLSVIKTLVHAG---ADVNH 162
E+GAD+ + + L +AA L+++K L+ AD++
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT--NQLAIVKFLLQNSWQPADISA 179
Query: 163 STKTQSTPLRAAC----------------YDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206
+T L A Y+ L + L ITN + L +
Sbjct: 180 RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239
Query: 207 AAYKG 211
AA G
Sbjct: 240 AASSG 244
Score = 90.6 bits (225), Expect = 5e-22
Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 40/173 (23%)
Query: 2 IAAYKGAGHLSVIKTLVHAGADVNHSTKTQ--------------STPLRAACYDGRLDIV 47
IA + +++++ LV GADV + PL A +L IV
Sbjct: 107 IAIERR--NMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164
Query: 48 KYLIEHG---ADLNITNHYNNSCLMIAAYKG--------------AGHLSVIKTLVHAGA 90
K+L+++ AD++ + N+ L L + L
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK 224
Query: 91 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 143
+ + TPL A G++ ++ Y+++ C AA+
Sbjct: 225 LEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAHHH 270
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 113 bits (286), Expect = 3e-32
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 48 KYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 107
+ HG+DL L+ AA G ++ L+ GADVN + TPL A
Sbjct: 5 HHHHHHGSDLG-------KKLLEAARAG--QDDEVRILMANGADVNAKDEYGLTPLYLAT 55
Query: 108 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQ 167
G L+IV+ L+++GAD+N + + L +AA+ G HL + + L+ GADVN K
Sbjct: 56 AHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG--HLEIAEVLLKHGADVNAQDKFG 113
Query: 168 STPLRAACYDGRLDIVKYLIEH 189
T + +G D+ + L +
Sbjct: 114 KTAFDISIGNGNEDLAEILQKL 135
Score = 111 bits (281), Expect = 2e-31
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 17 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA 76
H G+D+ L A G+ D V+ L+ +GAD+N + Y + L +A G
Sbjct: 7 HHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG- 58
Query: 77 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
HL +++ L+ GADVN TPL A + G L+I + L++HGAD+N + + +
Sbjct: 59 -HLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Query: 137 MIAAYKGAGHLSVIKTL 153
I+ G+ + + L
Sbjct: 118 DISIGN--GNEDLAEIL 132
Score = 109 bits (276), Expect = 9e-31
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 85 LVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGA 144
H G+D+ L A G+ D V+ L+ +GAD+N + Y + L +A G
Sbjct: 7 HHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG- 58
Query: 145 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
HL +++ L+ GADVN TPL A + G L+I + L++HGAD+N + + +
Sbjct: 59 -HLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Query: 205 MIAAYKG 211
I+ G
Sbjct: 118 DISIGNG 124
Score = 103 bits (259), Expect = 3e-28
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+ AA G ++ L+ GADVN + TPL A G L+IV+ L+++GAD+N
Sbjct: 19 LEAARAG--QDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 120
+ + L +AA+ G HL + + L+ GADVN K T + +G D+ + L +
Sbjct: 77 DAIGFTPLHLAAFIG--HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Query: 121 H 121
Sbjct: 135 L 135
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 109 bits (276), Expect = 5e-31
Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 21 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 80
G +K +TPL A +G + VK L+ GAD+N + N+ L +AA GH
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN--GHAE 56
Query: 81 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 136
++K L+ GADVN +K +TP A +G +IVK L GAD+N + ++
Sbjct: 57 IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 109 bits (276), Expect = 5e-31
Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 89 GADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLS 148
G +K +TPL A +G + VK L+ GAD+N + N+ L +AA G H
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG--HAE 56
Query: 149 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 204
++K L+ GADVN +K +TP A +G +IVK L GAD+N + ++
Sbjct: 57 IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 99.0 bits (248), Expect = 7e-27
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 54 GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD 113
G + N+ L AA G H +K L+ GADVN +K +TPL A +G +
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNG--HAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAE 56
Query: 114 IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 171
IVK L+ GAD+N + N+ +A GH ++K L GADVN + S
Sbjct: 57 IVKLLLAKGADVNARSKDGNTPEHLAKKN--GHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 94.0 bits (235), Expect = 6e-25
Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
AA G H +K L+ GADVN +K +TPL A +G +IVK L+ GAD+N
Sbjct: 14 HNAAKNG--HAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPL 103
+ N+ +A GH ++K L GADVN + S
Sbjct: 72 SKDGNTPEHLAKKN--GHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 79.3 bits (197), Expect = 2e-19
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 122 GADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD 181
G + N+ L AA G H +K L+ GADVN +K +TPL A +G +
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNG--HAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAE 56
Query: 182 IVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
IVK L+ GAD+N + N+ +A G
Sbjct: 57 IVKLLLAKGADVNARSKDGNTPEHLAKKNG 86
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 110 bits (275), Expect = 7e-29
Identities = 36/213 (16%), Positives = 66/213 (30%), Gaps = 17/213 (7%)
Query: 13 VIKTLVHAGADVNHST-KTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 71
V + ++N + +TPL L++VK+L++HG++ ++ SCL+ A
Sbjct: 112 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 171
Query: 72 AYKG--AGHLSVIKTLVHAGADVNHSTKTQSTPL----RAACYDGRLDIVKY-------- 117
+ L + + T L + G KY
Sbjct: 172 VKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW 231
Query: 118 LIEHGADLNITNHYNNSCLMIAAYKGA--GHLSVIKTLVHAGADVNHSTKTQSTPLRAAC 175
+++ + L + +N T L A
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 291
Query: 176 YDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 208
G + IV L+++GAD I N + A
Sbjct: 292 RLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 82.8 bits (204), Expect = 7e-19
Identities = 32/219 (14%), Positives = 67/219 (30%), Gaps = 22/219 (10%)
Query: 13 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLD-IVKYLIEHGADLNI-TNHYNNSCLMI 70
+ +L + ++ N + + + +D L + +LNI + + N+ L
Sbjct: 78 MPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHW 137
Query: 71 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDG----RLDIVKYLIEHGADLN 126
+L ++K LV G++ + + L A L L
Sbjct: 138 LTSI--ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 195
Query: 127 ITNHYNNSCLMIAAYKGA--GHLSVIKTLVHAGAD------------VNHSTKTQSTPLR 172
+ + N + L G + K + + +++
Sbjct: 196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 255
Query: 173 AACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
D L+ + LN + ++CL IAA G
Sbjct: 256 GERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294
Score = 66.6 bits (162), Expect = 3e-13
Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 2/134 (1%)
Query: 79 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
L ++K L + N L+ + ++ L ++ N +N
Sbjct: 43 LKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQH 102
Query: 139 AAYKGAGHLSVIKTLVHAGADVNHST-KTQSTPLRAACYDGRLDIVKYLIEHGADLNITN 197
++ + V + ++N + +TPL L++VK+L++HG++ +
Sbjct: 103 VSFD-SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD 161
Query: 198 HYNNSCLMIAAYKG 211
+ SCL+ A
Sbjct: 162 NMGESCLVKAVKSV 175
Score = 64.3 bits (156), Expect = 3e-12
Identities = 22/156 (14%), Positives = 38/156 (24%), Gaps = 16/156 (10%)
Query: 1 MIAAYKG--AGHLSVIKTLVHAGADVNHSTKTQSTPL----RAACYDGRLDIVKY----- 49
+ A + L + + T L + G KY
Sbjct: 169 VKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL 228
Query: 50 ---LIEHGADLNITNHYNNSCLMIAAYKGA--GHLSVIKTLVHAGADVNHSTKTQSTPLR 104
+++ + L + +N T L
Sbjct: 229 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 288
Query: 105 AACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 140
A G + IV L+++GAD I N + A
Sbjct: 289 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 102 bits (258), Expect = 1e-28
Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 33 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 92
TPL A +G L++VK L+E GAD+N + + L +AA GHL V+K L+ AGADV
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN--GHLEVVKLLLEAGADV 61
Query: 93 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 123
N K TPL A +G L++VK L+E GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 102 bits (258), Expect = 1e-28
Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 101 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADV 160
TPL A +G L++VK L+E GAD+N + + L +AA G HL V+K L+ AGADV
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HLEVVKLLLEAGADV 61
Query: 161 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGA 191
N K TPL A +G L++VK L+E GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 89.3 bits (223), Expect = 2e-23
Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L +AA G HL V+K L+ AGADVN K TPL A +G L++VK L+E GAD+N
Sbjct: 6 LHLAARNG--HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 128 TNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158
+ + L +AA GHL V+K L+ AGA
Sbjct: 64 KDKNGRTPLHLAARN--GHLEVVKLLLEAGA 92
Score = 87.0 bits (217), Expect = 2e-22
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+AA G HL V+K L+ AGADVN K TPL A +G L++VK L+E GAD+N
Sbjct: 7 HLAARNG--HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 90
+ + L +AA GHL V+K L+ AGA
Sbjct: 65 DKNGRTPLHLAARN--GHLEVVKLLLEAGA 92
Score = 80.5 bits (200), Expect = 5e-20
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 136 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 195
L +AA G HL V+K L+ AGADVN K TPL A +G L++VK L+E GAD+N
Sbjct: 6 LHLAARNG--HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 196 TNHYNNSCLMIAAYKG 211
+ + L +AA G
Sbjct: 64 KDKNGRTPLHLAARNG 79
Score = 53.5 bits (130), Expect = 6e-10
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 169 TPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
TPL A +G L++VK L+E GAD+N + + L +AA G
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 46
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 100 bits (251), Expect = 2e-27
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 38 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 97
L+ G+ + L+ AA G ++ L+ GADV K
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAG--QDDEVRILMANGADVAAKDK 55
Query: 98 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTL 153
STPL A +G L++VK L+E GAD+ + + + I+ G+ + + L
Sbjct: 56 NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN--GNEDLAEIL 109
Score = 98.8 bits (247), Expect = 7e-27
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 106 ACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTK 165
L+ G+ + L+ AA G ++ L+ GADV K
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAG--QDDEVRILMANGADVAAKDK 55
Query: 166 TQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKG 211
STPL A +G L++VK L+E GAD+ + + + I+ G
Sbjct: 56 NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG 101
Score = 98.8 bits (247), Expect = 8e-27
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 3 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 62
+ H LV G+ + L A G+ D V+ L+ +GAD+ +
Sbjct: 1 GSSHH--HHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDK 55
Query: 63 YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
++ L +AA GHL V+K L+ AGADV K T + +G D+ + L
Sbjct: 56 NGSTPLHLAARN--GHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 98.8 bits (247), Expect = 8e-27
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 71 AAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNH 130
+ H LV G+ + L A G+ D V+ L+ +GAD+ +
Sbjct: 1 GSSHH--HHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDK 55
Query: 131 YNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
++ L +AA G HL V+K L+ AGADV K T + +G D+ + L
Sbjct: 56 NGSTPLHLAARNG--HLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 74.1 bits (183), Expect = 2e-17
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 1 MIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNIT 60
+ AA G ++ L+ GADV K STPL A +G L++VK L+E GAD+
Sbjct: 29 LEAARAG--QDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 61 NHYNNSCLMIAAYKGAGHLSVIKTL 85
+ + + I+ G+ + + L
Sbjct: 87 DKFGKTAFDISIDN--GNEDLAEIL 109
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 96.4 bits (240), Expect = 3e-24
Identities = 39/230 (16%), Positives = 64/230 (27%), Gaps = 50/230 (21%)
Query: 1 MIAAYKG-AGHLSVIKTLVHAGAD-----------VNHSTKTQSTPLRAACYDGRLDIVK 48
A AG I L+ T L A V+
Sbjct: 51 PKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVE 110
Query: 49 YLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACY 108
L+E GAD++ + D PL A
Sbjct: 111 LLVEKGADVHAQA---------------------RGRFFQPKDEGGYFYFGELPLSLAAC 149
Query: 109 DGRLDIVKYLIEHG---ADLNITNHYNNSCLMIAAYKGAGH-------LSVIKTLVHAGA 158
+ IV YL E+G ADL + N+ L + L+ A
Sbjct: 150 TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA 209
Query: 159 DVNHSTKTQS-------TPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 201
+ T ++ +PL A G++ I +++I +H+++
Sbjct: 210 KLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259
Score = 89.8 bits (223), Expect = 7e-22
Identities = 42/223 (18%), Positives = 61/223 (27%), Gaps = 51/223 (22%)
Query: 38 ACYDGRLDIVKYLIEHGADLNITNHYNNS----CLMIAAYKG-AGHLSVIKTLVHAGAD- 91
DG ++ +L+ H L S CL A AG I L+
Sbjct: 16 GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75
Query: 92 ----------VNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC------ 135
T L A V+ L+E GAD++
Sbjct: 76 GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGG 135
Query: 136 --------LMIAAYKGAGHLSVIKTLV---HAGADVNHSTKTQSTPLRAACYDG------ 178
L +AA ++ L H AD+ +T L A
Sbjct: 136 YFYFGELPLSLAACT--NQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTREN 193
Query: 179 ---RLDIVKYLIEHGADLN-------ITNHYNNSCLMIAAYKG 211
+ L+ A L + N+ S LM+AA G
Sbjct: 194 TKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 66.7 bits (162), Expect = 4e-13
Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 4/172 (2%)
Query: 31 QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 90
+ RA+ + L + + HGAD+N N ++ + A L + L+ GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 91 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVI 150
+VN + PL A G + ++ GADL + L IA + ++
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA--METANADIV 317
Query: 151 KTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNS 202
L A + Q D D + L+ +H ++
Sbjct: 318 TLLRLAKM--REAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHDLHT 367
Score = 65.6 bits (159), Expect = 1e-12
Identities = 27/109 (24%), Positives = 44/109 (40%)
Query: 99 QSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGA 158
+ RA+ + L + + HGAD+N N ++ + A L + L+ GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 159 DVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
+VN + PL A G + ++ GADL + L IA
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Score = 57.5 bits (138), Expect = 5e-10
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
Query: 8 AGHLSVIKTLVHAGADVN--HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 65
L + + GADVN + + +TPL A L ++L+++GA++N +
Sbjct: 210 PPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGR 269
Query: 66 SCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 118
L A GH + + GAD+ PL A DIV L
Sbjct: 270 GPLHHATI--LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 54.0 bits (129), Expect = 9e-09
Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 4/127 (3%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
A L + L+ GA+VN + PL A G + ++ GADL +
Sbjct: 245 ANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDP 304
Query: 68 LMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNI 127
L IA + ++ L A + Q D D + L+
Sbjct: 305 LTIA--METANADIVTLLRLAKM--REAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSR 360
Query: 128 TNHYNNS 134
+H ++
Sbjct: 361 RSHDLHT 367
Score = 42.5 bits (99), Expect = 6e-05
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 144 AGHLSVIKTLVHAGADVN--HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN 201
L + + GADVN + + +TPL A L ++L+++GA++N +
Sbjct: 210 PPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGR 269
Query: 202 SCLMIAAYKG 211
L A G
Sbjct: 270 GPLHHATILG 279
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 56.9 bits (137), Expect = 7e-10
Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 9/139 (6%)
Query: 25 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN------SCLMIAAYKG-AG 77
+ T + L A + + G DL N + L +A
Sbjct: 124 HADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRT 183
Query: 78 HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 137
L ++ LV +++ T ST L C + +K L+ A + I N + L
Sbjct: 184 SLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD 243
Query: 138 IAAYKGAGHLSVIKTLVHA 156
IA K H + L A
Sbjct: 244 IA--KRLKHEHCEELLTQA 260
Score = 55.8 bits (134), Expect = 2e-09
Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 7/126 (5%)
Query: 93 NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN------SCLMIAAYKG-AG 145
+ T + L A + + G DL N + L +A
Sbjct: 124 HADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRT 183
Query: 146 HLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLM 205
L ++ LV +++ T ST L C + +K L+ A + I N + L
Sbjct: 184 SLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD 243
Query: 206 IAAYKG 211
IA
Sbjct: 244 IAKRLK 249
Score = 52.7 bits (126), Expect = 2e-08
Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 11/120 (9%)
Query: 78 HLSVIKTLVHAGADVN------HSTKTQSTPLRAACYDG---RLDIVKYLIEHGADLNIT 128
+ + G D+ + + T L A L IV +L+++ +L+
Sbjct: 142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ 201
Query: 129 NHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIE 188
++ L + +K L+ A + + ++ TPL A + L +
Sbjct: 202 TGKGSTALHYCCL--TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 52.3 bits (125), Expect = 2e-08
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
L ++ LV +++ T ST L C + +K L+ A + I N +
Sbjct: 182 RTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETP 241
Query: 68 LMIAAYKGAGHLSVIKTLVHA 88
L IA K H + L A
Sbjct: 242 LDIA--KRLKHEHCEELLTQA 260
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 56.5 bits (136), Expect = 1e-09
Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 11/122 (9%)
Query: 76 AGHLSVIKTLVHAGADVNHSTKTQ------STPLRAACYDGR---LDIVKYLIEHGADLN 126
L + G D L A L +V ++I++G L+
Sbjct: 161 NRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD 220
Query: 127 ITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYL 186
N+ L AA +K L+ A V + T L A + + L
Sbjct: 221 AKAADGNTALHYAAL--YNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Query: 187 IE 188
+
Sbjct: 279 EQ 280
Score = 55.0 bits (132), Expect = 3e-09
Identities = 25/141 (17%), Positives = 45/141 (31%), Gaps = 9/141 (6%)
Query: 26 HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN------SCLMIAAYKG-AGH 78
+ L A + L V +G D + L +A
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205
Query: 79 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 138
L ++ ++ G ++ +T L A + D +K L++ A + N + L I
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265
Query: 139 AAYKGAGHLSVIKTLVHAGAD 159
A + H + L A A
Sbjct: 266 A--RKKHHKECEELLEQAQAG 284
Score = 54.6 bits (131), Expect = 4e-09
Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 7/125 (5%)
Query: 94 HSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNN------SCLMIAAYKG-AGH 146
+ L A + L V +G D + L +A
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205
Query: 147 LSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMI 206
L ++ ++ G ++ +T L A + D +K L++ A + N + L I
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265
Query: 207 AAYKG 211
A K
Sbjct: 266 ARKKH 270
Score = 49.6 bits (118), Expect = 2e-07
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 8 AGHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSC 67
L ++ ++ G ++ +T L A + D +K L++ A + N +
Sbjct: 203 QASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA 262
Query: 68 LMIAAYKGAGHLSVIKTLVHAGAD 91
L IA + H + L A A
Sbjct: 263 LDIA--RKKHHKECEELLEQAQAG 284
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 51.4 bits (123), Expect = 7e-08
Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 9/132 (6%)
Query: 35 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSC------LMIAAYKG-AGHLSVIKTLVH 87
L A + L V +G D ++ L +A L ++ ++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 88 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHL 147
G ++ +T L A + D +K L++ A + N + L IA + H
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA--RKKHHK 253
Query: 148 SVIKTLVHAGAD 159
+ L A A
Sbjct: 254 ECEELLEQAQAG 265
Score = 50.7 bits (121), Expect = 1e-07
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 7/112 (6%)
Query: 103 LRAACYDGRLDIVKYLIEHGADLNITNHYNNSC------LMIAAYKG-AGHLSVIKTLVH 155
L A + L V +G D ++ L +A L ++ ++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 156 AGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIA 207
G ++ +T L A + D +K L++ A + N + L IA
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
Score = 46.4 bits (110), Expect = 3e-06
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 9 GHLSVIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCL 68
L ++ ++ G ++ +T L A + D +K L++ A + N + L
Sbjct: 185 ASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 244
Query: 69 MIAAYKGAGHLSVIKTLVHAGAD 91
IA + H + L A A
Sbjct: 245 DIA--RKKHHKECEELLEQAQAG 265
Score = 38.7 bits (90), Expect = 0.001
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 147 LSVIKTLVHAGADVN------HSTKTQSTPLRAAC---YDGRLDIVKYLIEHGADLNITN 197
LSV++ + G D + + L A L +V ++I++G L+
Sbjct: 146 LSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA 204
Query: 198 HYNNSCLMIAAYKG 211
N+ L AA
Sbjct: 205 ADGNTALHYAALYN 218
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 458
Score = 27.8 bits (62), Expect = 3.7
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 9/84 (10%)
Query: 147 LSVIKTLVHAGADV------NHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYN 200
L L GA + +PL + D+ A L I N +
Sbjct: 326 LGFDALLRSMGAHTVAAVVPARAAALVDSPLPSVRVGDLEDLEHAARAGQAQLVIGNSHA 385
Query: 201 NSCLMIAAYKGIDVGRVGPGLFDR 224
+ A G+ + R G +D
Sbjct: 386 LA---SARRLGVPLLRAGFPQYDL 406
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 6.3
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 8/106 (7%)
Query: 57 LNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGADVN---HSTKTQSTPLRAACYDGRLD 113
L + + +++ L+ A+ L +A D+ + T S LR
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNA-KDIQIPVYDTFDGSD-LRVLSGSISER 478
Query: 114 IVKYLIEHGADLNITNHYNNSCLMIAAYKGAGHLSVIKTLVHAGAD 159
IV +I T + + ++ G G S + L H D
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDF---GPGGASGLGVLTHRNKD 521
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 27.0 bits (60), Expect = 6.3
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 180 LDIVKYLIEHGADLNITNHYN----NSCLMIAAYKGIDVGRVGPGLFDR 224
+ + D I N Y L + + R+G +FDR
Sbjct: 428 WHLRSLVFTDKPDFMIGNSYGKFIQRDTLHKGKEFEVPLIRIGFPIFDR 476
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM;
1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Length = 591
Score = 26.6 bits (58), Expect = 9.1
Identities = 31/158 (19%), Positives = 47/158 (29%), Gaps = 25/158 (15%)
Query: 13 VIKTLVHAGADVNHSTKTQSTPLRAACYDGRLDIVKYLIEHGADLNITNHYNNSCLMIAA 72
++K D + T + A DG + I G ++ HY M+
Sbjct: 131 ILKWDPSNSKDNSQDGYTGDVLIDAYKLDGTK---LWRINLGKNIRAGAHYTQ--FMVYD 185
Query: 73 YKGAGHLSVI------------KTLVHAGAD-VNHSTKTQSTPLRAACYDGR----LDIV 115
G G V K + +A AD N + S P + G L
Sbjct: 186 LDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTA 245
Query: 116 KYLIEHGADLNITNHYNN---SCLMIAAYKGAGHLSVI 150
+ G + + Y N L AY S+I
Sbjct: 246 NFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLI 283
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.402
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,626,603
Number of extensions: 216189
Number of successful extensions: 2265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1100
Number of HSP's successfully gapped: 321
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.0 bits)