BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8425
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 9 IHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTL 68
+ P L N + + +S+ + C GNP P + WFKDN + + I K L
Sbjct: 665 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GIVLKDGNRNL 722
Query: 69 IITRIRSEDAGRYECRGTGV 88
I R+R ED G Y C+ V
Sbjct: 723 TIRRVRKEDEGLYTCQACSV 742
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 15 SGLRN-VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
SG+ + V + + +R+ + G P P + W+K+ + + +N + K L I +
Sbjct: 334 SGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI-----KAGHVLTIMEV 388
Query: 74 RSEDAGRYECRGTG-VHKDVVSAFAEVSINLRPD--NMGGPCPLDSY 117
D G Y T + K+ S + + + P P+DSY
Sbjct: 389 SERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSY 435
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 9 IHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTL 68
+ P L N + + +S+ + C GNP P + WFKDN + + I K L
Sbjct: 9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GIVLKDGNRNL 66
Query: 69 IITRIRSEDAGRYECRGTGV 88
I R+R ED G Y C+ V
Sbjct: 67 TIRRVRKEDEGLYTCQACSV 86
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P + L +V + + + L C+ G P ++W+K++ ++ + K+QFK ++L+I
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 71 TRIRSEDAGRYECRG 85
++ D G Y C+
Sbjct: 66 NKVDHSDVGEYTCKA 80
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK 64
R HP+E L+ V L C +G P VSW KD E+ + K+ KI +
Sbjct: 387 FRKKPHPVET--LKGADVHLE------CELQGTPPFQVSWHKDKRELRSGKKYKIMSENF 438
Query: 65 RSTLIITRIRSEDAGRYECRGT 86
+++ I + S D G Y+C+ +
Sbjct: 439 LTSIHILNVDSADIGEYQCKAS 460
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 22 VKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRY 81
VK + R C+ G+P V W+KD EI + + ++ F + + L + + ED+G Y
Sbjct: 303 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 362
Query: 82 ECRG 85
C
Sbjct: 363 TCEA 366
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 17 LRNVSVKLR--QSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIR 74
L+ VSV L +S C G ++W KDN EI K+ + +TL + ++
Sbjct: 202 LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVT 261
Query: 75 SEDAGRYECRGTGVH-KDVVSA 95
DAG+Y C + V KD SA
Sbjct: 262 KGDAGQYTCYASNVAGKDSCSA 283
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEIT-TNKRLKIQFKKKRSTLI 69
P V L ++S + + ++L +G +V+WFKD EI + + I + + +TL
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQ 537
Query: 70 ITRIRSEDAGRYECR 84
+R +AG+Y C+
Sbjct: 538 FSRAEPANAGKYTCQ 552
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSE 76
L++V L + CR G+ VSW+KD + + L+ F +TL I +
Sbjct: 108 LKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQS 167
Query: 77 DAGRYECRGT 86
G+Y C +
Sbjct: 168 HVGQYNCSAS 177
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169
Of Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNK-RLKIQ-FKKKRSTLIITRIR 74
LRN++V+ + + LVC+ G+P P V W++ EI + + +IQ FK LII +
Sbjct: 11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVT 70
Query: 75 SEDAGRYECRGT 86
+DA Y+ R T
Sbjct: 71 DDDATVYQVRAT 82
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNK-RLKIQ-FKKKRSTLIITRIR 74
LRN++V+ + + LVC+ G+P P V W++ EI + + +IQ FK LII +
Sbjct: 9 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVT 68
Query: 75 SEDAGRYECRGT 86
+DA Y+ R T
Sbjct: 69 DDDATVYQVRAT 80
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNK-RLKIQ-FKKKRSTLIITRIR 74
LRN++V+ + + LVC+ G+P P V W++ EI + + +IQ FK LII +
Sbjct: 11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVT 70
Query: 75 SEDAGRYECRGT 86
+DA Y+ R T
Sbjct: 71 DDDATVYQVRAT 82
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSE 76
+++V+ KL ++ +L C+ G PLP + W++ E+ +++ K+ + TL + E
Sbjct: 14 MKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQE 73
Query: 77 DAGRYECRGT 86
D G Y C T
Sbjct: 74 DEGVYTCIAT 83
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 27 SLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI-RSEDAGRYECRG 85
+LRL G P+PA++WF + ++ + I+ + + L++ + R AG+Y+ +
Sbjct: 120 TLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQL 179
Query: 86 TGVHKDVVSAFAEVSIN 102
+ V V A +V I
Sbjct: 180 SNVF-GTVDAILDVEIQ 195
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
P V + ++ V + +S+ C+ G P P W K+ + T R++I+ + TL
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE----QGTLN 350
Query: 70 ITRIRSEDAGRYECRGTGVHKDVVSAFAEVSI 101
IT + DAG Y+C H + S+ AE+S+
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSS-AELSV 381
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 12 IEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIIT 71
IEV V + +++L C GNP+P + W + + + K + K L I
Sbjct: 207 IEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR---HKSNGILEIP 263
Query: 72 RIRSEDAGRYEC-----RGTGVHKDVVSAFAE 98
+ EDAG YEC RG V K ++ +A+
Sbjct: 264 NFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ 295
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 25 RQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
+ ++L C KGNP P + W + ++ + S LI +++DAG Y+C
Sbjct: 23 EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG-SLLINNPNKTQDAGTYQCI 81
Query: 85 GTGVHKDVVSAFAEVSI 101
T +VS A++
Sbjct: 82 ATNSFGTIVSREAKLQF 98
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
P V + ++ V + +S+ C+ G P P W K+ + T R++I+ + TL
Sbjct: 294 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE----QGTLN 349
Query: 70 ITRIRSEDAGRYECRGTGVHKDVVSAFAEVSI 101
IT + DAG Y+C H + S+ AE+S+
Sbjct: 350 ITIVNLSDAGMYQCVAENKHGVIFSS-AELSV 380
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 12 IEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIIT 71
IEV V + +++L C GNP+P + W + + + K + K L I
Sbjct: 206 IEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR---HKSNGILEIP 262
Query: 72 RIRSEDAGRYEC-----RGTGVHKDVVSAFAE 98
+ EDAG YEC RG V K ++ +A+
Sbjct: 263 NFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ 294
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 25 RQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
+ ++L C KGNP P + W + ++ + S LI +++DAG Y+C
Sbjct: 22 EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG-SLLINNPNKTQDAGTYQCI 80
Query: 85 GTGVHKDVVSAFAEVSI 101
T +VS A++
Sbjct: 81 ATNSFGTIVSREAKLQF 97
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDA 78
N + + + + CR G+P PA+SWF++ I N+ K K + L + I + D
Sbjct: 13 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE--KYILKGSNTELTVRNIINSDG 70
Query: 79 GRYECRGTG-VHKDVVSAFAEVSI 101
G Y CR T +D AF +V +
Sbjct: 71 GPYVCRATNKAGEDEKQAFLQVFV 94
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFK--DNVEITT-----NKRL 57
L+ + P + L+N + + LVC +G P+P ++W + D T + R+
Sbjct: 90 LQVFVQP-HIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRI 148
Query: 58 KIQFKKKRSTLIITRIRSEDAGRYECRGT 86
+++ + S+L I ++ D+GRY+C
Sbjct: 149 EVKGQHGSSSLHIKDVKLSDSGRYDCEAA 177
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDA 78
N + + + + CR G+P PA+SWF++ I N+ K K + L + I + D
Sbjct: 107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE--KYILKGSNTELTVRNIINSDG 164
Query: 79 GRYECRGTG-VHKDVVSAFAEVSI 101
G Y CR T +D AF +V +
Sbjct: 165 GPYVCRATNKAGEDEKQAFLQVFV 188
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 23 KLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDA---- 78
K + +VCR +P PAVSW N E+TT + + I+ +S++
Sbjct: 15 KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 74
Query: 79 -GRYECRGTGVHKDVVSAFAEVSINLRP 105
GR E RG +D++ V +N+ P
Sbjct: 75 EGRVEARGEIDFRDII-----VIVNVPP 97
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK 64
R HP+E L+ V L C +G P VSW KD E+ + K+ KI +
Sbjct: 195 FRKKPHPVET--LKGADVHLE------CELQGTPPFQVSWHKDKRELRSGKKYKIMSENF 246
Query: 65 RSTLIITRIRSEDAGRYECRGT 86
+++ I + S D G Y+C+ +
Sbjct: 247 LTSIHILNVDSADIGEYQCKAS 268
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 22 VKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRY 81
VK + R C+ G+P V W+KD EI + + ++ F + + L + + ED+G Y
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Query: 82 ECRG 85
C
Sbjct: 171 TCEA 174
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDA 78
+V + L +S C G ++W KDN EI K+ + +TL + ++ DA
Sbjct: 14 SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDA 73
Query: 79 GRYECRGTGVH-KDVVSA 95
G+Y C + V KD SA
Sbjct: 74 GQYTCYASNVAGKDSCSA 91
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK 64
R HP+E L+ V L C +G P VSW KD E+ + K+ KI +
Sbjct: 195 FRKKPHPVET--LKGADVHLE------CELQGTPPFQVSWHKDKRELRSGKKYKIMSENF 246
Query: 65 RSTLIITRIRSEDAGRYECRGT 86
+++ I + S D G Y+C+ +
Sbjct: 247 LTSIHILNVDSADIGEYQCKAS 268
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 22 VKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRY 81
VK + R C+ G+P V W+KD EI + + ++ F + + L + + ED+G Y
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Query: 82 ECRG 85
C
Sbjct: 171 TCEA 174
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDA 78
+V + L +S C G ++W KDN EI K+ + +TL + ++ DA
Sbjct: 14 SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDA 73
Query: 79 GRYECRGTGVH-KDVVSA 95
G+Y C + V KD SA
Sbjct: 74 GQYTCYASNVAGKDSCSA 91
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITT-NKRLKIQFKKKRSTLI 69
PI + G N ++ + + L C+ G+PLP +SW K+ + R IQ ++ TL
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ---EQGTLQ 65
Query: 70 ITRIRSEDAGRYECRGT 86
I +R D G Y C T
Sbjct: 66 IKNLRISDTGTYTCVAT 82
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDA 78
N + + + + CR G+P PA+SWF++ I N+ K K + L + I + D
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE--KYILKGSNTELTVRNIINSDG 260
Query: 79 GRYECRGTG-VHKDVVSAFAEVSIN 102
G Y CR T +D AF +V +
Sbjct: 261 GPYVCRATNKAGEDEKQAFLQVFVQ 285
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 23 KLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDA---- 78
K + +VCR +P PAVSW N E+TT + + I+ +S++
Sbjct: 111 KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 170
Query: 79 -GRYECRGTGVHKDVVSAFAEVSINLRP 105
GR E RG +D++ V +N+ P
Sbjct: 171 EGRVEARGEIDFRDII-----VIVNVPP 193
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVE-ITTNKRLKIQFKKKRSTLIITRIRS 75
L V + + +S C G P ++ W+ E I + +R+ +Q + RS L I
Sbjct: 11 LSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANI 69
Query: 76 EDAGRYECRGT 86
EDAG Y C+ T
Sbjct: 70 EDAGIYRCQAT 80
>pdb|1P9J|A Chain A, Solution Structure And Dynamics Of The EgfTGF-Alpha
Chimera T1e
Length = 54
Score = 45.1 bits (105), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 112 CPL--DSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDV 151
CPL D YCL+ G C Y + + + C C GY G+RC+ +D+
Sbjct: 8 CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDL 49
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 22 VKLRQSLRLVCRCKGNPLPAVSWFKDNVEI---TTNKRLKIQFKKKRSTLIITRIRSEDA 78
V+ ++ ++C GNP P +SWFKD + + T+N R+K + + L I D
Sbjct: 120 VEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIK---QLRSGALQIESSEESDQ 176
Query: 79 GRYECRGTGVHKDVVSAFAEVSINLR 104
G+YEC T SA A + + +R
Sbjct: 177 GKYECVATNSAGTRYSAPANLYVRVR 202
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR-STLIITRIRSE-DAGRYECRGT 86
VC+ G P P ++W K ++++ + I+F S L I +R + D YEC T
Sbjct: 26 FVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTAT 84
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
R+++V +S R C G P+P V+W + ++T+ R ++ K +ST I+ +++ D
Sbjct: 16 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASD 75
Query: 78 AGRY 81
G Y
Sbjct: 76 EGNY 79
>pdb|1EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
pdb|1EPG|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPH|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPI|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPJ|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|3EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
Length = 53
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 109 GGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDV 151
G P D YCLNGG C + +++ C C GY G RC+++D+
Sbjct: 5 GCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRDL 47
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
R+++V +S R C G P+P V+W + ++T+ R ++ K +ST I+ +++ D
Sbjct: 22 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASD 81
Query: 78 AGRY 81
G Y
Sbjct: 82 EGNY 85
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 19 NVSVKLRQSLRLVCRC-KGNPLPAVSWFKDNVEITT-NKRLKIQFKKKRSTLIITRIRSE 76
+V V + + + C+ +G+P P +SW KD + ++R+ I+ K L+IT R
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK----LMITYTRKS 175
Query: 77 DAGRYECRGTGVHKDVVSAFAEVSINLRP 105
DAG+Y C GT + + S AE+++ RP
Sbjct: 176 DAGKYVCVGTNMVGERESEVAELTVLERP 204
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNK 55
L C+ +G P P + W+K + T+K
Sbjct: 29 LNCKAEGRPTPTIEWYKGGERVETDK 54
>pdb|3NJP|C Chain C, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
pdb|3NJP|D Chain D, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
Length = 47
Score = 44.3 bits (103), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 112 CPL--DSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDV 151
CPL D YCL+ G C Y + + + C C GY G+RC+ +D+
Sbjct: 2 CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDL 43
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 20 VSVKLRQSLRLV--CRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
++VK+ + L+ V C GNP P+VSW K + + N R+ + + +L I ++ ED
Sbjct: 108 INVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL---ESGSLRIHNVQKED 164
Query: 78 AGRYEC 83
AG+Y C
Sbjct: 165 AGQYRC 170
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P+ + L V + + +C + P P +SW ++ + I + ++ L I
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIRENGQLLTI 66
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
+ D G Y C V + + + ++P
Sbjct: 67 LSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKP 101
>pdb|1GK5|A Chain A, Solution Structure The MegfTGFALPHA44-50 Chimeric Growth
Factor
Length = 49
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 109 GGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDV 151
G P D YCLNGG C + +++ C C GY G RCE D+
Sbjct: 5 GCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCEHADL 47
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI----R 74
++ VK + L C+ +G P P + WFKD ++TN++ + + K L R +
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKK 77
Query: 75 SEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNM 108
+D G Y C VS A + I + D+
Sbjct: 78 EQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDF 111
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 35 KGNPLPAVSWFKDNVEITTNKRLKIQFKKK-----RSTLIITRIRSEDAGRYECRGTGVH 89
KG P P + W KD V + K + + L+I+ + D G Y+C +
Sbjct: 134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLV 193
Query: 90 KDVVSAFAEVSINLR 104
S++A++ + ++
Sbjct: 194 GTRESSYAKLIVQVK 208
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI----R 74
++ VK + L C+ +G P P + WFKD ++TN++ + + K L R +
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKK 77
Query: 75 SEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNM 108
+D G Y C VS A + I + D+
Sbjct: 78 EQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDF 111
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 35 KGNPLPAVSWFKDNVEITTNKRLKIQFKKK-----RSTLIITRIRSEDAGRYECRGTGVH 89
KG P P + W KD V + K + + L+I+ + D G Y+C +
Sbjct: 134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLV 193
Query: 90 KDVVSAFAEVSINLR 104
S++A++ + ++
Sbjct: 194 GTRESSYAKLIVQVK 208
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 22 VKLRQSLRLVCRCKGNPLPAVSWFKDNVEITT---NKRLKIQFKKKRSTLIITRIRSEDA 78
V+ ++ ++C GNP P ++WFKD + + T N R+K + L I + D
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQ 179
Query: 79 GRYECRGT 86
G+YEC T
Sbjct: 180 GKYECVAT 187
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR-STLIITRIRS-EDAGRYEC 83
+C+ G+P P + W K +++ + I+F S L I +R+ D YEC
Sbjct: 26 FICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYEC 81
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 6 RATIH--PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKK 63
R IH P + + + + LR C G P PAV W +D + + R+++ +
Sbjct: 288 RIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE 347
Query: 64 KRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSIN 102
R +++ ED+G Y+C H V A AE+++
Sbjct: 348 LR----FSKLVLEDSGMYQCVAENKH-GTVYASAELTVQ 381
Score = 33.1 bits (74), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 25 RQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITR-IRSEDAGRYEC 83
+ + L CR + NP W + E+ + ++ L+I+ ++++DAG Y+C
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSR--YRLVAGDLVISNPVKAKDAGSYQC 79
Query: 84 RGTGVHKDVVS 94
T VVS
Sbjct: 80 VATNARGTVVS 90
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 26 QSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRG 85
Q + L C GNP+P + W K + T+ ++ L I + ED G YEC
Sbjct: 223 QMVTLECFAFGNPVPQIKWRKLDGSQTS------KWLSSEPLLHIQNVDFEDEGTYECEA 276
Query: 86 TGV 88
+
Sbjct: 277 ENI 279
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P+ V+GL++ +V + + G P P W KD IT + K+ K L I
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 71 TRIRSEDAGRYEC 83
+ + D+G Y C
Sbjct: 67 HKTDTSDSGLYTC 79
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRST 67
T P V L++++V+ +RL R G P P V +++D EI ++ +I + +
Sbjct: 101 TAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYS 160
Query: 68 LIITRIRSEDAGRYECRGT 86
L+I ED+G Y T
Sbjct: 161 LLIAEAYPEDSGTYSVNAT 179
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKR--LKIQFKKKR 65
T P L++V V + G P+P VSWF+D I+T+ ++I F R
Sbjct: 3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 66 STLIITRIRSEDAGRYECRGT 86
+ L I + ++GRY + T
Sbjct: 63 AKLTIPAVTKANSGRYSLKAT 83
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRST 67
T P V L++++V+ +RL R G P P V +++D EI ++ +I + +
Sbjct: 101 TAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYS 160
Query: 68 LIITRIRSEDAGRYECRGT 86
L+I ED+G Y T
Sbjct: 161 LLIAEAYPEDSGTYSVNAT 179
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKR--LKIQFKKKR 65
T P L++V V + G P+P VSWF+D I+T+ ++I F R
Sbjct: 3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 66 STLIITRIRSEDAGRYECRGT 86
+ L I + ++GRY + T
Sbjct: 63 AKLTIPAVTKANSGRYSLKAT 83
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL-KIQFKKKRSTLIITRIRSEDA 78
++V ++R C GNP P++SW K+ E R+ I+ + ++ +L++ + D
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 192
Query: 79 GRYEC 83
G Y C
Sbjct: 193 GNYTC 197
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 6 RATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR 65
+ + P + ++ V + R C+ +G P P V WFKD+ + ++ +I + ++
Sbjct: 37 KPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 96
Query: 66 S-TLIITRIRSEDAGRYECRG 85
+ +L I+ + +D +Y C+
Sbjct: 97 NCSLTISEVCGDDDAKYTCKA 117
>pdb|1IVO|C Chain C, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains.
pdb|1IVO|D Chain D, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains.
pdb|1NQL|B Chain B, Structure Of The Extracellular Domain Of Human Epidermal
Growth Factor (egf) Receptor In An Inactive (low Ph)
Complex With Egf.
pdb|2KV4|A Chain A, Egf
Length = 53
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 107 NMGGPCPL--DSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDV 151
N CPL D YCL+ G C Y + + + C C GY G+RC+ +D+
Sbjct: 1 NSDSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDL 47
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 6 RATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR 65
+ + P + ++ V + R C+ +G P P V WFKD+ + ++ +I + ++
Sbjct: 37 KPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEG 96
Query: 66 S-TLIITRIRSEDAGRYECRG 85
+ +L I+ + +D +Y C+
Sbjct: 97 NCSLTISEVCGDDDAKYTCKA 117
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL-KIQFKKKRSTLIITRIRSEDA 78
++V ++R C GNP P++SW K+ E R+ I+ + ++ +L++ + D
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 84
Query: 79 GRYEC 83
G Y C
Sbjct: 85 GNYTC 89
>pdb|2E6P|A Chain A, Solution Structure Of The Ig-Like Domain (714-804) From
Human Obscurin-Like Protein 1
Length = 104
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 2 SKGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGN--PLPAVSWFKDNVEITTNKRLKI 59
S G +H + S VS+ S R+V C+ + PA +W+KD ++ ++ L +
Sbjct: 2 SSGSSGPVHIL--SPQDKVSLTFTTSERVVLTCELSRVDFPA-TWYKDGQKVEESELLVV 58
Query: 60 QFKKKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSIN 102
+ ++ LI+ + +D+G +ECR G VSAF V++
Sbjct: 59 KMDGRKHRLILPEAKVQDSGEFECRTEG-----VSAFFGVTVQ 96
>pdb|1JL9|A Chain A, Crystal Structure Of Human Epidermal Growth Factor
pdb|1JL9|B Chain B, Crystal Structure Of Human Epidermal Growth Factor
Length = 51
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 107 NMGGPCPL--DSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDV 151
N CPL D YCL+ G C Y + + + C C GY G+RC+ +D+
Sbjct: 1 NSDSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDL 47
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From
The Neural Cell Adhesion Molecule
Length = 107
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEIT-TNKRLKIQFKKKRSTLIITRIRSED 77
N + L QS+ L C G P P ++W KD I + K F S LII ++ D
Sbjct: 22 NATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSD 81
Query: 78 AGRYEC 83
Y C
Sbjct: 82 EAEYIC 87
>pdb|1A3P|A Chain A, Role Of The 6-20 Disulfide Bridge In The Structure And
Activity Of Epidermal Growth Factor, Nmr, 20 Structures
Length = 45
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 109 GGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDV 151
G P D YCLNGG + +++ C C GY G RC+++D+
Sbjct: 2 GXPSSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTRDL 44
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEI---TTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGT 86
++C GNP P +SWFKD + + +N R+K + + L I D G+YEC T
Sbjct: 129 MLCAAGGNPDPEISWFKDFLPVDPAASNGRIK---QLRSGALQIESSEESDQGKYECVAT 185
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR-STLIITRIRSE-DAGRYECRGT 86
VC+ G P P ++W K ++++ + I+F S L I +R + D YEC T
Sbjct: 27 FVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTAT 85
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEI-TTNKRLKIQFKKKRSTLI 69
P+ G +++ ++ + C+ GNP P + W K+ ++ +N R + K L
Sbjct: 113 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL----KDGFLQ 168
Query: 70 ITRIRSEDAGRYEC 83
I R ED G+YEC
Sbjct: 169 IENSREEDQGKYEC 182
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 15/178 (8%)
Query: 4 GLRATIHPIEV-SGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEIT-TNKRLKIQF 61
G + HP E+ +N V++ C +G+P P++ W K+ +++ T R +
Sbjct: 1 GPGSAAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVL- 59
Query: 62 KKKRSTLIITRIRSEDAGR----YECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPLDSY 117
++ + I RI AGR YEC D VSA A ++I G P
Sbjct: 60 -EQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI-----YEGDKTPAGFP 113
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVYNRS--SMYKPYFSWIKGTVQIFN 173
+ G T VG V + + N++ M P +S G +QI N
Sbjct: 114 VITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIEN 171
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEI-TTNKRLKIQFKKKRSTLI 69
P+ G +++ ++ + C+ GNP P + W K+ ++ +N R + K L
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL----KDGFLQ 166
Query: 70 ITRIRSEDAGRYEC 83
I R ED G+YEC
Sbjct: 167 IENSREEDQGKYEC 180
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 15/172 (8%)
Query: 10 HPIEV-SGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEIT-TNKRLKIQFKKKRST 67
HP E+ +N V++ C +G+P P++ W K+ +++ T R + ++
Sbjct: 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVL--EQPGG 62
Query: 68 LIITRIRSEDAGR----YECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGS 123
+ I RI AGR YEC D VSA A ++I G P + G
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI-----YEGDKTPAGFPVITQGP 117
Query: 124 CTYYDTVGELVCQCAEGYKGQRCESKDVYNRS--SMYKPYFSWIKGTVQIFN 173
T VG V + + N++ M P +S G +QI N
Sbjct: 118 GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIEN 169
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 22 VKLRQSLRLVCRCKGNPLPAVSWFKDNVEI---TTNKRLKIQFKKKRSTLIITRIRSEDA 78
V+ ++ ++C GNP P ++WFKD + + +N R+K + + L I D
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK---QLRSGALQIESSEETDQ 176
Query: 79 GRYECRGT 86
G+YEC T
Sbjct: 177 GKYECVAT 184
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI-ITRIRSE-DAGRYEC 83
VC+ G+P P V+W K ++ + + I+F + ++ I +R+ D YEC
Sbjct: 26 FVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYEC 81
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 27 SLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGT 86
++ + C G+P+P V W + ++T + + R+ L +T ++ D+ Y C
Sbjct: 222 NVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV----GRNVLELTDVK--DSANYTCVAM 275
Query: 87 GVHKDVVSAFAEVSINLRP 105
V+ A A++++ P
Sbjct: 276 S-SLGVIEAVAQITVKSLP 293
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 22 VKLRQSLRLVCRCKGNPLPAVSWFKDNVEI---TTNKRLKIQFKKKRSTLIITRIRSEDA 78
V+ ++ ++C GNP P ++WFKD + + T+N R+K + + L I D
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIK---QLRSGGLQIESSEETDQ 176
Query: 79 GRYEC 83
G+YEC
Sbjct: 177 GKYEC 181
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI-ITRIRSE-DAGRYECRGTG 87
VC+ G+P P V+W K ++ + + I+F + ++ I +R+ D YEC
Sbjct: 26 FVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYECVAQN 85
Query: 88 VHKDVVSAFAEVSINLRPDNM 108
H + V+ A++++ LR D +
Sbjct: 86 PHGE-VTVHAKLTV-LREDQL 104
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 2 SKGLRATIHPIEVSGLRN-------VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTN 54
+KG PI S R + + + ++ L+C +G P P+ W+K +E TT
Sbjct: 203 TKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYK-FIEGTTR 261
Query: 55 KR---LKIQFKKKRSTLIITRIRSEDAGRYEC 83
K+ L + K+ TLII ED+G+Y C
Sbjct: 262 KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLC 293
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVH 89
C+ GNP+ VSW KD I ++ S L I ++ ED G Y+C V
Sbjct: 333 FTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCF---VR 379
Query: 90 KDVVSAFAEVSINL 103
D SA A + L
Sbjct: 380 NDRESAEASAELKL 393
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRST-LIITRIRSEDA 78
V+++ ++L L C G+P P VSW K+ + ++ ++F+ R+ I + + D+
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADS 291
Query: 79 GRY 81
G+Y
Sbjct: 292 GKY 294
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 42 VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYEC 83
+ W+KD EI+ ++ K FK TL+IT +DAG YE
Sbjct: 39 IVWYKDEREISVDE--KHDFKDGICTLLITEFSKKDAGIYEV 78
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 2 SKGLRATIHPIEVSGLRN-------VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTN 54
+KG PI S R + + + ++ L+C +G P P+ W+K +E TT
Sbjct: 197 TKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYK-FIEGTTR 255
Query: 55 KR---LKIQFKKKRSTLIITRIRSEDAGRYEC 83
K+ L + K+ TLII ED+G+Y C
Sbjct: 256 KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLC 287
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVH 89
C+ GNP+ VSW KD I ++ S L I ++ ED G Y+C V
Sbjct: 327 FTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCF---VR 373
Query: 90 KDVVSAFAEVSINL 103
D SA A + L
Sbjct: 374 NDRESAEASAELKL 387
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFK--DNVEITT-----NKRLKIQFKKKRSTLI 69
L+N + + LVC +G P+P ++W + D T + R++++ + S+L
Sbjct: 7 LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH 66
Query: 70 ITRIRSEDAGRYECRG 85
I ++ D+GRY+C
Sbjct: 67 IKDVKLSDSGRYDCEA 82
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 31/120 (25%)
Query: 28 LRLVCRCKGNPLPAVSWFKDNVEI----TTNKRLKIQFKKKRSTLIITRIRSEDAGRYEC 83
+ + C K NP ++ W +D + + TTN LK ++ L I D GRY C
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTN--LKTYSTGRKMILEIAPTSDNDFGRYNC 175
Query: 84 RGTG-----------VHKDVVSA------------FAEVSINLRPDNMGGPCPLDSYCLN 120
T DV S+ A+VS N +PD+ GG P+ Y ++
Sbjct: 176 TATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFN-KPDSHGG-VPIHHYQVD 233
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFK--DNVEITT-----NKRLKIQFKKKRSTLI 69
L+N + + LVC +G P+P ++W + D T + R++++ + S+L
Sbjct: 7 LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH 66
Query: 70 ITRIRSEDAGRYECRG 85
I ++ D+GRY+C
Sbjct: 67 IKDVKLSDSGRYDCEA 82
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 31/120 (25%)
Query: 28 LRLVCRCKGNPLPAVSWFKDNVEI----TTNKRLKIQFKKKRSTLIITRIRSEDAGRYEC 83
+ + C K NP ++ W +D + + TTN LK ++ L I D GRY C
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTN--LKTYSTGRKMILEIAPTSDNDFGRYNC 175
Query: 84 RGTG-----------VHKDVVSA------------FAEVSINLRPDNMGGPCPLDSYCLN 120
T DV S+ A+VS N +PD+ GG P+ Y ++
Sbjct: 176 TATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFN-KPDSHGG-VPIHHYQVD 233
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 22 VKLRQSLRLVCRCKGNPLPAVSWFKDNVEI---TTNKRLKIQFKKKRSTLIITRIRSEDA 78
V+ ++ ++C GNP P ++WFKD + + +N R+K + + L I D
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK---QLRSGALQIESSEETDQ 176
Query: 79 GRYECRGT 86
G+YEC T
Sbjct: 177 GKYECVAT 184
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI-ITRIRS-EDAGRYEC 83
VC+ G+P P V+W K ++ + + I+F + ++ I +R+ D YEC
Sbjct: 26 FVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYEC 81
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 22 VKLRQSLRLVCRCKGNPLPAVSWFKDNVEI---TTNKRLKIQFKKKRSTLIITRIRSEDA 78
V+ ++ ++C GNP P ++WFKD + + +N R+K + + L I D
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK---QLRSGALQIESSEETDQ 176
Query: 79 GRYECRGT 86
G+YEC T
Sbjct: 177 GKYECVAT 184
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI-ITRIRS-EDAGRYEC 83
VC+ G+P P V+W K ++ + + I+F + ++ I +R+ D YEC
Sbjct: 26 FVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYEC 81
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRST-LIITRIRSEDA 78
V+++ ++L L C G+P P VSW K+ + ++F+ R+ I + + D+
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADS 186
Query: 79 GRY 81
G+Y
Sbjct: 187 GKY 189
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKR---LKIQFKKKRSTLIITRIRSE 76
+ V+L S L+C + P P+ W+K +E TT K+ L + K+ TLII E
Sbjct: 225 IDVELASSYSLLCMAQSYPTPSFRWYK-FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 283
Query: 77 DAGRYEC 83
D+G+Y C
Sbjct: 284 DSGKYLC 290
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVH 89
C+ GNP+ VSW KD I ++ S L I ++ ED G Y+C V
Sbjct: 330 FTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCF---VR 376
Query: 90 KDVVSAFAEVSINL 103
D SA A + L
Sbjct: 377 NDRESAEASAELKL 390
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDN--VEITTNKRLKIQFKKKRSTLIITRIRSE 76
N + L QS+ LVC G P P +SW KD +E K F S L I +
Sbjct: 205 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN 264
Query: 77 DAGRYEC 83
D Y C
Sbjct: 265 DEAEYVC 271
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2
Domains Of The Human Mucosa-Associated Lymphoid Tissue
Lymphoma Translocation Protein 1
Length = 218
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 15/84 (17%)
Query: 1 MSKGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQ 60
+ +G + T++P + +V Q ++L CR G+P WFK N EI
Sbjct: 15 VPRGSKITVNP------ESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG------ 62
Query: 61 FKKKRSTLIITRIRSEDAGRYECR 84
S LI + +DAG Y CR
Sbjct: 63 ---NTSELIFNAVHVKDAGFYVCR 83
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 27 SLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGT 86
+L L C G+P+P WFK+ + +T + + ++ + E G Y C
Sbjct: 135 TLVLQCVAVGSPIPHYQWFKNELPLT---------HETKKLYMVPYVDLEHQGTYWCHVY 185
Query: 87 GVHKDVVSAFAEVSINLRPDNMGGP 111
S E+ I+ +N+G P
Sbjct: 186 NDRDSQDSKKVEIIID-ELNNLGHP 209
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 27 SLRLVCRCKGNPLPAVSWFKDNVEITTNKR---LKIQFKKKRSTLIITRIRSEDAGRYEC 83
++ L+C +G P+P W+K +E TT K+ L + K+ TLII ED+G+Y C
Sbjct: 265 TMALLCPAQGYPVPVFRWYK-FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLC 323
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKI-QFKKKRSTLI 69
P+ + +++ S+ L C GNP P +SW D +I N R ++ Q+ ++
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVV 489
Query: 70 ----ITRIRSEDAGRYEC 83
IT + + D G Y+C
Sbjct: 490 SYLNITSVHANDGGLYKC 507
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGR 80
+V + C+ GNP+ VSW KD I ++ S L I ++ ED G
Sbjct: 354 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGM 403
Query: 81 YECRGTGVHKDVVSAFAEVSINL 103
Y+C V D SA A + L
Sbjct: 404 YQCF---VRNDRESAEASAELKL 423
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 26 QSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI-RSEDAGRYEC 83
++L + C G P+ ++ W +DN + N++ K+ TLII + R+ D Y C
Sbjct: 542 ETLIVTCPVAGYPIDSIVWERDNRALPINRKQKV---FPNGTLIIENVERNSDQATYTC 597
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
Length = 107
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 27/67 (40%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
R V V L C G P P V W K ++ ++RL L++T D
Sbjct: 21 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTD 80
Query: 78 AGRYECR 84
AG Y CR
Sbjct: 81 AGVYVCR 87
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 27/67 (40%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
R V V L C G P P V W K ++ ++RL L++T D
Sbjct: 22 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTD 81
Query: 78 AGRYECR 84
AG Y CR
Sbjct: 82 AGVYVCR 88
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITT-NKRLKIQFKKKRSTLI 69
P+ G N +V + + L C G+P+P + W KD V ++T + R+K + + L
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIK---QLENGVLQ 65
Query: 70 ITRIRSEDAGRYECRGTGVHKDVV-SAFAEV 99
I + D GRY C + + SA+ EV
Sbjct: 66 IRYAKLGDTGRYTCIASTPSGEATWSAYIEV 96
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 26 QSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRG 85
QS CR + P V+W KD+ E+ + + ++ L I R++ +D G Y R
Sbjct: 498 QSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRA 557
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 26 QSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRG 85
QS CR + P V+W KD+ E+ + + ++ L I R++ +D G Y R
Sbjct: 392 QSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRA 451
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
Length = 109
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 27/67 (40%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
R V V L C G P P V W K ++ ++RL L++T D
Sbjct: 22 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTD 81
Query: 78 AGRYECR 84
AG Y CR
Sbjct: 82 AGVYVCR 88
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
Length = 220
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL-KIQFKKKRSTLIITRIRSEDAG 79
+V +++ C GNP+P + W K+ E R+ + + + +LI+ + D G
Sbjct: 22 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 81
Query: 80 RYEC 83
Y C
Sbjct: 82 NYTC 85
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 11 PIEVSGL-RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKR-------LKI--- 59
PI +GL N S + + VC+ + P + W K +VE +K LK+
Sbjct: 110 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK-HVEKNGSKYGPDGLPYLKVLKA 168
Query: 60 ----QFKKKRSTLIITRIRSEDAGRYEC 83
K+ L I + EDAG Y C
Sbjct: 169 AGVNTTDKEIEVLYIRNVTFEDAGEYTC 196
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin
Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin
Complex
Length = 219
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL-KIQFKKKRSTLIITRIRSEDAG 79
+V +++ C GNP+P + W K+ E R+ + + + +LI+ + D G
Sbjct: 21 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 80
Query: 80 RYEC 83
Y C
Sbjct: 81 NYTC 84
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 6 RATIHPIEVSGL-RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKR-------L 57
R+ PI +GL N S + + VC+ + P + W K +VE +K L
Sbjct: 104 RSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK-HVEKNGSKYGPDGLPYL 162
Query: 58 KI-------QFKKKRSTLIITRIRSEDAGRYEC 83
K+ K+ L I + EDAG Y C
Sbjct: 163 KVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC 195
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL-KIQFKKKRSTLIITRIRSEDAG 79
+V +++ C GNP+P + W K+ E R+ + + + +LI+ + D G
Sbjct: 22 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 81
Query: 80 RYEC 83
Y C
Sbjct: 82 NYTC 85
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 6 RATIHPIEVSGL-RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKR-------L 57
R+ PI +GL N S + + VC+ + P + W K +VE +K L
Sbjct: 105 RSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK-HVEKNGSKYGPDGLPYL 163
Query: 58 KI-------QFKKKRSTLIITRIRSEDAGRYEC 83
K+ K+ L I + EDAG Y C
Sbjct: 164 KVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC 196
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
Length = 220
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL-KIQFKKKRSTLIITRIRSEDAG 79
+V +++ C GNP+P + W K+ E R+ + + + +LI+ + D G
Sbjct: 22 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 81
Query: 80 RYEC 83
Y C
Sbjct: 82 NYTC 85
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 6 RATIHPIEVSGL-RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKR-------L 57
R+ PI +GL N S + + VC+ + P + W K +VE +K L
Sbjct: 105 RSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK-HVEKNGSKYGPDGLPYL 163
Query: 58 KI-------QFKKKRSTLIITRIRSEDAGRYEC 83
K+ K+ L I + EDAG Y C
Sbjct: 164 KVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC 196
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL-KIQFKKKRSTLIITRIRSEDAG 79
+V +++ C GNP+P + W K+ E R+ + + + +LI+ + D G
Sbjct: 20 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 79
Query: 80 RYEC 83
Y C
Sbjct: 80 NYTC 83
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 6 RATIHPIEVSGL-RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKR-------L 57
R+ PI +GL N S + + VC+ + P + W K +VE +K L
Sbjct: 103 RSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK-HVEKNGSKYGPDGLPYL 161
Query: 58 KI-------QFKKKRSTLIITRIRSEDAGRYEC 83
K+ K+ L I + EDAG Y C
Sbjct: 162 KVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC 194
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain
Of Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL-KIQFKKKRSTLIITRIRSEDAG 79
+V +++ C GNP+P + W K+ E R+ + + + +LI+ + D G
Sbjct: 30 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 89
Query: 80 RYEC 83
Y C
Sbjct: 90 NYTC 93
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 26 QSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRG 85
Q + L C GNP+P + W K + L Q+ TL I + ED G YEC
Sbjct: 222 QQVTLECFAFGNPVPRIKWRK------VDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEA 275
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSE 76
+ + + +LR C G P P V W ++ + + R+++ R +++ E
Sbjct: 300 ISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLR----FSKLSLE 355
Query: 77 DAGRYECRGTGVHKDVVSAFAEVSIN 102
D+G Y+C H + A AE+++
Sbjct: 356 DSGMYQCVAENKH-GTIYASAELAVQ 380
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 25 RQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
+ + L CR + +P W + E+ + Q + +I+ +++DAG Y+C
Sbjct: 21 EEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGG-NLVIMNPTKAQDAGVYQCL 79
Query: 85 GTGVHKDVVS 94
+ VVS
Sbjct: 80 ASNPVGTVVS 89
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 68 LIITRIRSEDAGRYECRGTGVHKD-----VVSAFAEVSINLRPDNMGGPC-----PLDSY 117
L I R + D G Y C T H D V S FA++++ + P P ++Y
Sbjct: 159 LYIARTNASDLGNYSCLATS-HMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETY 217
Query: 118 CLNGGSCT 125
L G T
Sbjct: 218 ALVGQQVT 225
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL-KIQFKKKRSTLIITRIRSEDAG 79
+V +++ C GNP+P + W K+ E R+ + + + +LI+ + D G
Sbjct: 23 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 82
Query: 80 RYEC 83
Y C
Sbjct: 83 NYTC 86
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL-KIQFKKKRSTLIITRIRSEDAG 79
+V +++ C GNP+P + W K+ E R+ + + + +LI+ + D G
Sbjct: 19 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 78
Query: 80 RYEC 83
Y C
Sbjct: 79 NYTC 82
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL-KIQFKKKRSTLIITRIRSEDAG 79
+V +++ C GNP+P + W K+ E R+ + + + +LI+ + D G
Sbjct: 24 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 83
Query: 80 RYEC 83
Y C
Sbjct: 84 NYTC 87
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYEC 83
L LV G P V W+KD + + R++++ R L + RS DAG Y C
Sbjct: 14 LELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLC 68
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYEC 83
L L C G P P ++W+K ++ ++ K +F+ L IT + ED+G Y C
Sbjct: 240 LLLECIASGVPTPDIAWYKKGGDLPSD---KAKFENFNKALRITNVSEEDSGEYFC 292
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 22 VKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRS-----E 76
V R ++ + C KGNP P+ W +++ K ++ +++ TL+I RS E
Sbjct: 29 VDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVID-FRSGGRPEE 87
Query: 77 DAGRYEC 83
G Y+C
Sbjct: 88 YEGEYQC 94
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK 64
+R P + +N+ + + RLVCR GNP P V W N E + +
Sbjct: 307 VRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMV-NGEPLQSAPPNPNREVA 365
Query: 65 RSTLIITRIRSEDAGRYECRGTGVHKDVVS-AFAEV 99
T+I + Y+C + H +++ AF V
Sbjct: 366 GDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain
Of Fgfr2b Harboring The A172f Pfeiffer Syndrome
Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain
Of Fgfr2b Harboring The A172f Pfeiffer Syndrome
Mutation
Length = 231
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL-KIQFKKKRSTLIITRIRSEDAG 79
+V +++ C GNP+P + W K+ E R+ + + + +LI+ + D G
Sbjct: 30 AVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 89
Query: 80 RYEC 83
Y C
Sbjct: 90 NYTC 93
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAG 79
+ VK Q + + C+ G P P V W N + + R + S L+I +++ D G
Sbjct: 319 IVVKQGQDVTIPCKVTGLPAPNVVW-SHNAKPLSGGRATVT----DSGLVIKGVKNGDKG 373
Query: 80 RYECRGTGVHKD 91
Y CR T H D
Sbjct: 374 YYGCRATNEHGD 385
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 26 QSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDA-----GR 80
+ +VCR +P PAVSW N E+TT + + I+ +S++ GR
Sbjct: 112 EDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGR 171
Query: 81 YECRGTGVHKDVV 93
E RG +D++
Sbjct: 172 VEARGEIDFRDII 184
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVE-ITTNKRLKIQFKKKRSTLIITRIRS 75
L V + + +S C G P ++ W+ E I + +R+ +Q + RS L I
Sbjct: 9 LSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANI 67
Query: 76 EDAGRYECRGT 86
EDAG Y C+ T
Sbjct: 68 EDAGIYRCQAT 78
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 2 SKGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQF 61
S G R H ++ G +++V+ + R+ C+ G P P +SW D + + K+
Sbjct: 5 SSGFRP--HFLQAPG--DLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLV 60
Query: 62 KKKR-STLIITRIRSEDAGRYECRGT 86
++ +LII + S DAG Y C T
Sbjct: 61 RENGVHSLIIEPVTSRDAGIYTCIAT 86
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 36.2 bits (82), Expect = 0.010, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
CLN G C D +G+ C CAEG++G+ CE
Sbjct: 11 CLNQGHCK--DGIGDYTCTCAEGFEGKNCE 38
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNK--RLKIQFKKKRSTLIITRIRSE 76
++S+ + L + C G P P V+W +I + + R I+ +TLII ++ +
Sbjct: 14 DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQ 73
Query: 77 DAGRYECRGTGVHKDVVSAFAEVSINLR 104
D G Y + + S A V+I++R
Sbjct: 74 DGGLYTLS---LGNEFGSDSATVNIHIR 98
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLK-IQFKKKRSTLIITRIRSE 76
N+S+ + R+ + G P P VSW+ + + ++ K I +K +LI +R+
Sbjct: 13 ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRAS 72
Query: 77 DAGRYEC 83
DAG Y C
Sbjct: 73 DAGAYAC 79
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNK--RLKIQFKKKRSTLIITRIRSE 76
++S+ + L + C G P P V+W +I + + R I+ +TLII ++ +
Sbjct: 16 DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQ 75
Query: 77 DAGRYECRGTGVHKDVVSAFAEVSINLR 104
D G Y + + S A V+I++R
Sbjct: 76 DGGLYTLS---LGNEFGSDSATVNIHIR 100
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C NGG+C + VCQC EG+ G+ CE
Sbjct: 56 CFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
V ++V + Q++ L C GNP+P + W K + + + L I I
Sbjct: 117 VVQFKDVYALMGQNVTLECFALGNPVPDIRWRK----VLEPMPSTAEISTSGAVLKIFNI 172
Query: 74 RSEDAGRYECRGTGV 88
+ ED G YEC +
Sbjct: 173 QLEDEGIYECEAENI 187
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVE-ITTNKRLKIQFKKKRSTLIITRIRS 75
L V + + +S C G P ++ W+ E I + +R+ +Q + RS L I
Sbjct: 7 LSKVELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANI 65
Query: 76 EDAGRYECRGT 86
EDAG Y C+ T
Sbjct: 66 EDAGIYRCQAT 76
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 97 AEVSINLRPDNMGGPCP-------LDSYCLNGGSCTYYDTVGELVCQCAE-GYKGQRC-E 147
EV ++ P N GG P CLNGG C+ D + VC C+ G++G+ C +
Sbjct: 170 GEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDD--QAVCDCSRTGFRGKDCSQ 227
Query: 148 SKDVYNRSSMYKPYF 162
K+ Y + YF
Sbjct: 228 GKEEYIATFKGSEYF 242
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR--STLIITRIRSED 77
++V Q ++L C +G P + W KD + +L I ++ L + + D
Sbjct: 12 LTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 71
Query: 78 AGRYECR 84
AGRY C+
Sbjct: 72 AGRYWCQ 78
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 97 AEVSINLRPDNMGGPCP-------LDSYCLNGGSCTYYDTVGELVCQCAE-GYKGQRC-E 147
EV ++ P N GG P CLNGG C+ D + VC C+ G++G+ C +
Sbjct: 170 GEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDD--QAVCDCSRTGFRGKDCSQ 227
Query: 148 SKDVYNRSSMYKPYF 162
K+ Y + YF
Sbjct: 228 GKEEYIATFKGSEYF 242
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL-KIQFKKKRSTLIITRIRSEDAG 79
+V +++ C GNP P W K+ E R+ + + + +LI + D G
Sbjct: 22 AVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKG 81
Query: 80 RYEC 83
Y C
Sbjct: 82 NYTC 85
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 6 RATIHPIEVSGL-RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKR-------L 57
R+ PI +GL N S + + VC+ + P + W K +VE +K L
Sbjct: 105 RSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK-HVEKNGSKYGPDGLPYL 163
Query: 58 KI-------QFKKKRSTLIITRIRSEDAGRYEC 83
K+ K+ L I + EDAG Y C
Sbjct: 164 KVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC 196
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSE 76
+ +++VK + C + W+K+ VE+ +KR+ I + L+I +R E
Sbjct: 15 IADLTVKAAEQAVFKCEVSDEKVTG-KWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPE 73
Query: 77 DAGRY 81
D G Y
Sbjct: 74 DEGDY 78
>pdb|3LTF|D Chain D, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
pdb|3LTF|B Chain B, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain In Complex With Spitz
Length = 58
Score = 34.3 bits (77), Expect = 0.037, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 117 YCLNGGSCTYYDTVGEL---VCQCAEGYKGQRCESKDVYN 153
YCLN C + + +L C+CA G+ GQRCE K++ N
Sbjct: 15 YCLNDAHC-FAVKIADLPVYSCECAIGFMGQRCEYKEIDN 53
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL-KIQFKKKRSTLIITRIRSEDAG 79
+V +++ C GNP P W K+ E R+ + + + +LI + D G
Sbjct: 29 AVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKG 88
Query: 80 RYEC 83
Y C
Sbjct: 89 NYTC 92
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 15/94 (15%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR------STLIITRIRSEDAGRYEC 83
L C G P P+ +W + E+ IQ + K+ S L+I+ + +D+G Y C
Sbjct: 241 LECCVSGYPPPSFTWLRGE-EV-------IQLRSKKYSLLGGSNLLISNVTDDDSGTYTC 292
Query: 84 RGTGVHKDVVSAFAEVSINLRPDNMGGPCPLDSY 117
T +++ +SA AE+++ + P + P L +Y
Sbjct: 293 VVTYKNEN-ISASAELTVLVPPWFLNHPSNLYAY 325
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 37/92 (40%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
+S +++ + ++ L C G+P+P + W K+ ++ L I+R+
Sbjct: 125 LSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRL 184
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
+ D+G Y C AEV I P
Sbjct: 185 QPGDSGVYRCSARNPASTRTGNEAEVRILSDP 216
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 2 SKGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQF 61
S L + P ++ N+ + C G P+P V+W K+ + + +I
Sbjct: 304 SAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQI-- 361
Query: 62 KKKRSTLIITRIRSEDAGRYEC 83
S L I + D G Y+C
Sbjct: 362 -VGGSNLRILGVVKSDEGFYQC 382
>pdb|3C9A|C Chain C, High Resolution Crystal Structure Of Argos Bound To The
Egf Domain Of Spitz
pdb|3C9A|D Chain D, High Resolution Crystal Structure Of Argos Bound To The
Egf Domain Of Spitz
pdb|3CA7|A Chain A, High Resolution Crystal Structure Of The Egf Domain Of
Spitz
pdb|3LTG|D Chain D, Crystal Structure Of The Drosophila Epidermal Growth
Factor Receptor Ectodomain Complexed With A Low Affinity
Spitz Mutant
Length = 52
Score = 33.5 bits (75), Expect = 0.072, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 117 YCLNGGSCTYYDTVGEL---VCQCAEGYKGQRCESKDV 151
YCLN C + + +L C+CA G+ GQRCE K++
Sbjct: 15 YCLNDAHC-FAVKIADLPVYSCECAIGFMGQRCEYKEI 51
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 33.1 bits (74), Expect = 0.076, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
CLN G C +G+ C CAEG++G+ CE
Sbjct: 11 CLNQGHCK--XGIGDYTCTCAEGFEGKNCE 38
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 33.1 bits (74), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 11 PIEVS-GLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
PI+ + GLRN + V RC+ + + V W+K + + R ++ R L
Sbjct: 19 PIKFTEGLRNEEAT--EGATAVLRCELSKMAPVEWWKGHETLRDGDRHSLRQDGARCELQ 76
Query: 70 ITRIRSEDAGRYEC 83
I + +EDAG Y C
Sbjct: 77 IRGLVAEDAGEYLC 90
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 13/73 (17%)
Query: 27 SLRLVCRCKGNPLPAVSWFKDN-------VEITTNKRLK------IQFKKKRSTLIITRI 73
S+ L C G+P+P + W+ + ++ RL + ST+ I +
Sbjct: 38 SVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL 97
Query: 74 RSEDAGRYECRGT 86
ED G YECR +
Sbjct: 98 VEEDTGTYECRAS 110
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 33.1 bits (74), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 27 SLRLVCRCKGNPLPAVSWFKDNV---EITTN-------KRLKIQ---FKKKRSTLIITRI 73
S+ L C G+P+P + W+ + +I + R+ I + ST+ I +
Sbjct: 38 SVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISIDTL 97
Query: 74 RSEDAGRYECRGT 86
ED G YECR +
Sbjct: 98 VEEDTGTYECRAS 110
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain
From Human Cdna
Length = 113
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 29 RLVCRCKG-NPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
R+V C+ P V W KD E+ + L +Q + L++ ++ ED+G Y C
Sbjct: 30 RVVLTCELCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCE 86
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 32.7 bits (73), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDN--VEITTNKRLKIQFKKKR-- 65
+P ++G R ++ LR L++ +G P P V W +D +E+ + + ++ +
Sbjct: 8 NPGNITGARGLTGTLRCQLQV----QGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 66 -----STLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
S L IT ++ D G+Y+C H+ VS V + P
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLP 107
>pdb|2EDK|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Myosin-Binding Protein C, Fast-Type
Length = 101
Score = 32.7 bits (73), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 42 VSWFKDNVEITTNKRLKI--QFKK--KRSTLIITRIRSEDAGRYEC 83
V W K+ VE+T K +FKK KR LI + + ED GRY+
Sbjct: 39 VMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQV 84
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEIT 52
L++ + + CR GNP P + WFKD +I+
Sbjct: 15 LKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQIS 50
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEIT 52
L++ + + CR GNP P + WFKD +I+
Sbjct: 14 LKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQIS 49
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 109 GGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
G PC + CL+ GSC D++ C C+ GY+G CE
Sbjct: 5 GSPC-ISQPCLHNGSCQ--DSIWGYTCTCSPGYEGSNCE 40
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 27 SLRLVCRCKGNPLPAVSWFKDN--VEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
S++L C+ P P + W ++N V+ T++ Q R TL+I + +DAG Y
Sbjct: 32 SVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVS 91
Query: 85 GTGVHKDVVSAFAEVSINLRPD 106
V + + + RP+
Sbjct: 92 AVN-EAGVTTCNTRLDVTARPN 112
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn
Protein
Length = 102
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
R V + S L C V+W+KD +++++ +++++ L++ + +
Sbjct: 19 REVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAE 77
Query: 78 AGRYECRGTG 87
AG Y C G
Sbjct: 78 AGEYSCEAGG 87
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 6 RATIHPIEVSGL-RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNK--------- 55
R+ PI +GL N +V L ++ +C+ +P P + W K ++E+ +K
Sbjct: 110 RSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLK-HIEVNGSKIGPDNLPYV 168
Query: 56 -RLKIQ----FKKKRSTLIITRIRSEDAGRYEC 83
LK K+ L + + EDAG Y C
Sbjct: 169 QILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTC 201
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRST--LIITRIRSEDA 78
+V ++++ C G P P + W K+ E + R+ +K + +T +I+ + D
Sbjct: 27 AVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIG-GYKVRYATWSIIMDSVVPSDK 85
Query: 79 GRYEC 83
G Y C
Sbjct: 86 GNYTC 90
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 6 RATIHPIEVSGL-RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNK--------- 55
R+ PI +GL N +V L ++ +C+ +P P + W K ++E+ +K
Sbjct: 111 RSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLK-HIEVNGSKIGPDNLPYV 169
Query: 56 -RLKIQ----FKKKRSTLIITRIRSEDAGRYEC 83
LK K+ L + + EDAG Y C
Sbjct: 170 QILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTC 202
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRST--LIITRIRSEDA 78
+V ++++ C G P P + W K+ E + R+ +K + +T +I+ + D
Sbjct: 28 AVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIG-GYKVRYATWSIIMDSVVPSDK 86
Query: 79 GRYEC 83
G Y C
Sbjct: 87 GNYTC 91
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 6 RATIHPIEVSGL-RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNK--------- 55
R+ PI +GL N +V L ++ +C+ +P P + W K ++E+ +K
Sbjct: 110 RSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQWLK-HIEVNGSKIGPDNLPYV 168
Query: 56 -RLKIQ----FKKKRSTLIITRIRSEDAGRYEC 83
LK K+ L + + EDAG Y C
Sbjct: 169 QILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTC 201
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRST--LIITRIRSEDA 78
+V ++++ C G P P + W K+ E + R+ +K + +T +I+ + D
Sbjct: 27 AVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIG-GYKVRYATWSIIMDSVVPSDK 85
Query: 79 GRYEC 83
G Y C
Sbjct: 86 GNYTC 90
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWF---KDNVEITTNKRLKIQFKKKRSTLIITRIR 74
+ V V +++ VCR G+P PA+ W K V +N RL + TL + +
Sbjct: 393 QQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTV---FPDGTLEVRYAQ 449
Query: 75 SEDAGRYEC 83
+D G Y C
Sbjct: 450 VQDNGTYLC 458
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 32.0 bits (71), Expect = 0.20, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 21/91 (23%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRST 67
TI P+ N S + ++L L C NP SWF + F++
Sbjct: 207 TISPL------NTSYRSGENLNLSCHAASNPPAQYSWFVNGT-----------FQQSTQE 249
Query: 68 LIITRIRSEDAGRYECRG----TGVHKDVVS 94
L I I ++G Y C+ TG+++ V+
Sbjct: 250 LFIPNITVNNSGSYTCQAHNSDTGLNRTTVT 280
>pdb|2VLJ|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLK|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLM|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLR|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLR|I Chain I, The Structural Dynamics And Energetics Of An
Immunodominant T-cell Receptor Are Programmed By Its
Vbeta Domain
Length = 201
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 50 EITTNKRLKIQF--KKKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAE-VSINLRPD 106
E+ KRL QF +K S+L IT + D G Y C G G +++ F + ++++P
Sbjct: 54 EVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLI--FGKGTKLSVKP- 110
Query: 107 NMGGPCPL-----DSYCLNGGSCTYYD 128
N+ P P DS + C + D
Sbjct: 111 NIQNPDPAVYQLRDSKSSDKSVCLFTD 137
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSE 76
+R+ V Q+ R + + P V W+ + VE+ + ++ TL I ++
Sbjct: 15 MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTD 74
Query: 77 DAGRY 81
D+G Y
Sbjct: 75 DSGTY 79
>pdb|2XN9|A Chain A, Crystal Structure Of The Ternary Complex Between Human T
Cell Receptor, Staphylococcal Enterotoxin H And Human
Major Histocompatibility Complex Class Ii
pdb|2XNA|A Chain A, Crystal Structure Of The Complex Between Human T Cell
Receptor And Staphylococcal Enterotoxin
Length = 204
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 50 EITTNKRLKIQF--KKKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAE-VSINLRPD 106
E+ KRL QF +K S+L IT + D G Y C G G +++ F + ++++P
Sbjct: 54 EVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLI--FGKGTKLSVKP- 110
Query: 107 NMGGPCPL-----DSYCLNGGSCTYYD 128
N+ P P DS + C + D
Sbjct: 111 NIQNPDPAVYQLRDSKSSDKSVCLFTD 137
>pdb|1OGA|D Chain D, A Structural Basis For Immunodominant Human T-Cell
Receptor Recognition
Length = 215
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 50 EITTNKRLKIQF--KKKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAE-VSINLRPD 106
E+ KRL QF +K S+L IT + D G Y C G G +++ F + ++++P
Sbjct: 54 EVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLI--FGKGTKLSVKP- 110
Query: 107 NMGGPCP 113
N+ P P
Sbjct: 111 NIQNPDP 117
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 42 VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYEC 83
+ W+KD EI+ ++ K FK TL+IT +DAG YE
Sbjct: 254 IVWYKDEREISVDE--KHDFKDGICTLLITEFSKKDAGIYEV 293
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 27 SLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGT 86
SL C K P SW KD V + RL+++ K ++ + + +D G Y C T
Sbjct: 20 SLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVT 78
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
CLN G C +G+ C CAEG++G+ CE
Sbjct: 55 CLNQGHCKX--GIGDYTCTCAEGFEGKNCE 82
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
S C N G C D +GE C C EG++G+ CE
Sbjct: 48 SPCQNQGKCK--DGLGEYTCTCLEGFEGKNCE 77
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 42 VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYEC 83
+ W+KD EI+ ++ K FK TL+IT +DAG YE
Sbjct: 149 IVWYKDEREISVDE--KHDFKDGICTLLITEFSKKDAGIYEV 188
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
S C N G C D +GE C C EG++G+ CE
Sbjct: 8 SPCQNQGKCK--DGLGEYTCTCLEGFEGKNCE 37
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 57 LKIQFKKKRSTLIITRIRSEDAGRYECRGTGVHKD 91
L Q K +++IT +R EDAGRY C G H D
Sbjct: 281 LNPQDKDGSFSVVITGLRKEDAGRYLC---GAHSD 312
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 9/107 (8%)
Query: 15 SGLRN-VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
SG+ + V + + +R+ + G P P + W+K+ + + +N + K L I +
Sbjct: 204 SGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI-----KAGHVLTIMEV 258
Query: 74 RSEDAGRYECRGTG-VHKDVVSAFAEVSINLRPD--NMGGPCPLDSY 117
D G Y T + K+ S + + + P P+DSY
Sbjct: 259 SERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSY 305
>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 329
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 42 VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVHKDVV 93
++W+K+N E+ + ++ + LII ED+GRY+C VH D V
Sbjct: 161 ITWYKNNQELIIDGT---KYSQSGQNLIIHNPELEDSGRYDCY---VHYDDV 206
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 29 RLVCRCK---GNPLPAVSWFKDNVEITTNKRLKIQ--------FKKKRSTLIITRIRSED 77
R V C G+P SWFKD + + T K + K LI + + D
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFD 180
Query: 78 AGRYECRG 85
+G Y C+
Sbjct: 181 SGEYYCQA 188
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSW-FKD---------NVEITTNKRLKIQFKKKRSTL 68
+V V +S++L C G P V W F N +IT ++ F S +
Sbjct: 10 DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS--SGI 67
Query: 69 IITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINL 103
+ + +D G Y C V ++ + EVSI+L
Sbjct: 68 TFSSVTRKDNGEYTCM---VSEEGGQNYGEVSIHL 99
>pdb|2YUZ|A Chain A, Solution Structure Of 4th Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSE 76
L + +V L + + L C N +P W K+ + + + RLK+ K + L+I +E
Sbjct: 14 LTDQTVNLGKEICLKCEISEN-IPG-KWTKNGLPVQESDRLKVVQKGRIHKLVIANALTE 71
Query: 77 DAGRY 81
D G Y
Sbjct: 72 DEGDY 76
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human
Apep-1
Length = 99
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTN-KRLKIQFKKKRSTLIITRIRS 75
L + SV+ Q + + R +G P P VSW ++ + + +R + + L I
Sbjct: 12 LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAER 71
Query: 76 EDAGRYECRGT 86
DAG Y C+
Sbjct: 72 GDAGFYTCKAV 82
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 29 RLVCRCK---GNPLPAVSWFKDNVEITTNKRLKIQFKKKR-------STLIITRIRSEDA 78
R V C G+P +WFKD + + TN + F L+ + + D
Sbjct: 124 RAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDT 183
Query: 79 GRYECRG 85
G Y C
Sbjct: 184 GEYSCEA 190
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 30.0 bits (66), Expect = 0.62, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 108 MGGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
+ PC D+ CL D +GE C C GY+G CE
Sbjct: 6 ISNPCQNDATCL--------DQIGEFQCICMPGYEGVYCE 37
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
S C N G C D +GE C C EG++G+ CE
Sbjct: 53 SPCQNQGKCK--DGLGEYTCTCLEGFEGKNCE 82
>pdb|2YWZ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 111
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 18 RNVSVKLRQSLRLVCRCKGNP--LPAVSWFKDNVEITTNKRLKIQFK--------KKRST 67
R ++ + +SL + C K + L + +W++ + T K + I + K +
Sbjct: 8 RTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFS 67
Query: 68 LIITRIRSEDAGRYECRG 85
L I+ +R ED+G Y+C+
Sbjct: 68 LRISDLRVEDSGTYKCQA 85
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
S C N G C D +GE C C EG++G+ CE
Sbjct: 48 SPCQNQGKCK--DGLGEYTCTCLEGFEGKNCE 77
>pdb|2I9A|A Chain A, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|B Chain B, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|C Chain C, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|D Chain D, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9B|A Chain A, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|B Chain B, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|C Chain C, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|D Chain D, Crystal Structure Of Atf-urokinase Receptor Complex
Length = 145
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 19/80 (23%)
Query: 113 PLDSYCLNGGSCT---YYDTVGELVCQCAEGYKGQRCE---SKDVY-----------NRS 155
P + CLNGG+C Y+ + C C + + GQ CE SK Y +
Sbjct: 10 PSNCDCLNGGTCVSNKYFSNI--HWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTD 67
Query: 156 SMYKPYFSWIKGTVQIFNYY 175
+M +P W TV Y+
Sbjct: 68 TMGRPCLPWNSATVLQQTYH 87
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 23 KLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYE 82
K+ + L LV +G P P V W K + T+ R+ ++ + + + D+G YE
Sbjct: 37 KVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS-RVHVRTSDFDTVFFVRQAARSDSGEYE 95
Query: 83 C 83
Sbjct: 96 L 96
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
N +VK S+ L C N + A + W ++ + +R+ + + S L I I+ ED
Sbjct: 119 NTTVKELDSVTLTCL--SNDIGANIQWLFNSQSLQLTERMTL--SQNNSILRIDPIKRED 174
Query: 78 AGRYECR 84
AG Y+C
Sbjct: 175 AGEYQCE 181
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
N +VK S+ L C N + A + W ++ + +R+ + + S L I I+ ED
Sbjct: 119 NTTVKELDSVTLTCL--SNDIGANIQWLFNSQSLQLTERMTL--SQNNSILRIDPIKRED 174
Query: 78 AGRYECR 84
AG Y+C
Sbjct: 175 AGEYQCE 181
>pdb|3BT1|A Chain A, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
pdb|3BT2|A Chain A, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
Length = 135
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 19/80 (23%)
Query: 113 PLDSYCLNGGSCT---YYDTVGELVCQCAEGYKGQRCE---SKDVY-----------NRS 155
P + CLNGG+C Y+ + C C + + GQ CE SK Y +
Sbjct: 10 PSNCDCLNGGTCVSNKYFSNI--HWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTD 67
Query: 156 SMYKPYFSWIKGTVQIFNYY 175
+M +P W TV Y+
Sbjct: 68 TMGRPCLPWNSATVLQQTYH 87
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 27 SLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
+L L C G+P+P WFK+ + +T + + ++ + E G Y C
Sbjct: 20 TLVLQCVAVGSPIPHYQWFKNELPLT---------HETKKLYMVPYVDLEHQGTYWCH 68
>pdb|3U73|A Chain A, Crystal Structure Of Stabilized Human Upar Mutant In
Complex With Atf
Length = 132
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 19/80 (23%)
Query: 113 PLDSYCLNGGSCT---YYDTVGELVCQCAEGYKGQRCE---SKDVY-----------NRS 155
P + CLNGG+C Y+ + C C + + GQ CE SK Y +
Sbjct: 8 PSNCDCLNGGTCVSNKYFSNI--HWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTD 65
Query: 156 SMYKPYFSWIKGTVQIFNYY 175
+M +P W TV Y+
Sbjct: 66 TMGRPCLPWNSATVLQQTYH 85
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C + G C +T+G CQC +GY G RCE
Sbjct: 15 CEHAGKCI--NTLGSFECQCLQGYTGPRCE 42
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 97 AEVSINLRPDNMGGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
E+ +N + + PC D+ CL D +GE C C GY+G CE
Sbjct: 41 CEIDVN---ECVSNPCQNDATCL--------DQIGEFQCICMPGYEGVHCE 80
>pdb|1URK|A Chain A, Solution Structure Of The Amino Terminal Fragment Of
Urokinase-Type Plasminogen Activator
Length = 130
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 19/80 (23%)
Query: 113 PLDSYCLNGGSCT---YYDTVGELVCQCAEGYKGQRCE---SKDVY-----------NRS 155
P + CLNGG+C Y+ + C C + + GQ CE SK Y +
Sbjct: 3 PSNCDCLNGGTCVSNKYFSNI--HWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTD 60
Query: 156 SMYKPYFSWIKGTVQIFNYY 175
+M +P W TV Y+
Sbjct: 61 TMGRPCLPWNSATVLQQTYH 80
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
S C N G C D +GE C C EG++G+ CE
Sbjct: 10 SPCQNQGKCK--DGLGEYTCTCLEGFEGKNCE 39
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
S C N G C D +GE C C EG++G+ CE
Sbjct: 10 SPCQNQGKCK--DGLGEYTCTCLEGFEGKNCE 39
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
S C N G C D +GE C C EG++G+ CE
Sbjct: 8 SPCQNQGKCK--DGLGEYTCTCLEGFEGKNCE 37
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
S C N G C D +GE C C EG++G+ CE
Sbjct: 9 SPCQNQGKCK--DGLGEYTCTCLEGFEGKNCE 38
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like
Domain(2826-2915) From Human Obscurin
Length = 103
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 2 SKGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQF 61
S G A I P+E + V + + L C P V W KD I +++ +
Sbjct: 5 SSGPAAIIKPLE-----DQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVC 58
Query: 62 KKKRSTLIITRIRSEDAGRYECR 84
+ + L+I +DAG Y C
Sbjct: 59 EGTMAMLVIRGASLKDAGEYTCE 81
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCES 148
S C NGGSC D + +C C ++G+ CE+
Sbjct: 9 SPCQNGGSCK--DQLQSYICFCLPAFEGRNCET 39
>pdb|1K36|A Chain A, Nmr Structure Of Human Epiregulin
pdb|1K37|A Chain A, Nmr Structure Of Human Epiregulin
Length = 46
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 113 PLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
++ YCL+G C Y + + C+C GY G RCE
Sbjct: 9 DMNGYCLHG-QCIYLVDMSQNYCRCEVGYTGVRCE 42
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And Tgf-A
Length = 39
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
CLNGGSC D + C C G++G+ CE
Sbjct: 11 CLNGGSCK--DDINSYECWCPFGFEGKNCE 38
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNK 55
L C+ +G P P + W+K + T+K
Sbjct: 29 LNCKAEGRPTPTIEWYKGGERVETDK 54
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr, 23
Structures
Length = 41
Score = 28.5 bits (62), Expect = 1.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCES 148
S C NGGSC D + +C C ++G+ CE+
Sbjct: 9 SPCQNGGSCK--DQLQSYICFCLPAFEGRNCET 39
>pdb|1MOX|C Chain C, Crystal Structure Of Human Epidermal Growth Factor
Receptor (Residues 1-501) In Complex With Tgf-Alpha
pdb|1MOX|D Chain D, Crystal Structure Of Human Epidermal Growth Factor
Receptor (Residues 1-501) In Complex With Tgf-Alpha
pdb|2TGF|A Chain A, The Solution Structure Of Human Transforming Growth Factor
Alpha
pdb|3TGF|A Chain A, The Solution Structure Of Human Transforming Growth Factor
Alpha
pdb|4TGF|A Chain A, Solution Structures Of Human Transforming Growth Factor
Alpha Derived From 1H Nmr Data
pdb|3E50|C Chain C, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|D Chain D, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 50
Score = 28.5 bits (62), Expect = 2.0, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 112 CPLDS---YCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDV 151
CP DS +C +G +C + + C C GY G RCE D+
Sbjct: 8 CP-DSHTQFCFHG-TCRFLVQEDKPACVCHSGYVGARCEHADL 48
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRS-TLI 69
P+ V +++V + L CR G + +V+W N + T+ +++ TL
Sbjct: 313 PVIVEPPTDLNVTEGMAAELKCR-TGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLN 371
Query: 70 ITRIRSEDAGRYECRGTG 87
T + +D G+Y C T
Sbjct: 372 FTNVTVQDTGQYTCMVTN 389
>pdb|2LVC|A Chain A, Solution Nmr Structure Of Ig Like Domain (805-892) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578k
Length = 91
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 26 QSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYEC 83
+ + L C P V W+KD E+ + + ++ + L++ + D G ++C
Sbjct: 22 ECVMLACEVDREDAP-VRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQC 78
>pdb|1YUF|A Chain A, Type Alpha Transforming Growth Factor, Nmr, 16 Models
Without Energy Minimization
pdb|1YUG|A Chain A, Type Alpha Transforming Growth Factor, Nmr, 15 Models
After Ecepp3 ENERGY MINIMIZATION
Length = 50
Score = 28.5 bits (62), Expect = 2.1, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 112 CPLDS---YCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDV 151
CP DS +C +G +C + + C C GY G RCE D+
Sbjct: 8 CP-DSHTQFCFHG-TCRFLVQEDKPACVCHSGYVGARCEHADL 48
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C + G C +T+G CQC +GY G RCE
Sbjct: 13 CEHAGKC--INTLGSFECQCLQGYTGPRCE 40
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 97 AEVSINLRPDNMGGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
E+ +N + + PC D+ CL D +GE C C GY+G CE
Sbjct: 39 CEIDVN---ECVSNPCQNDATCL--------DQIGEFQCICMPGYEGVHCE 78
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 70 ITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGP-C-PLDSYCLNGGSCTYY 127
+ + +DAG Y R G + SAF + + GP C L + C+N G C +
Sbjct: 156 LPHAQPQDAGVYSARYIGGNL-FTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVC--H 212
Query: 128 DTVGELVCQCAEGYKGQRCE 147
+ GE C C G+ G+ CE
Sbjct: 213 EDTGE--CICPPGFMGRTCE 230
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 27 SLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIR 74
+L C +G+P P+V+W V+ TT+ R FK RS + +
Sbjct: 135 TLAASCTAEGSPAPSVTW-DTEVKGTTSSR---SFKHSRSAAVTSEFH 178
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 26 QSLRLVCRCKGNPLPAVSWFKDN----VEITTNK-RLKIQFKKKRSTLIITRIR-SEDAG 79
Q + C+ G P P W K EI+ + R I K+ + L I ++ +ED G
Sbjct: 108 QDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPG 167
Query: 80 RYECRGTG 87
YEC T
Sbjct: 168 EYECNATN 175
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 44 WFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINL 103
W K+ VE+T ++ + + I + R+ED+G Y C V+ V + A +I +
Sbjct: 39 WTKNGVELTATRKNASNMEYR-----INKPRAEDSGEYHC----VYHFVSAPKANATIEV 89
Query: 104 R--PDNMG 109
+ PD G
Sbjct: 90 KAAPDITG 97
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 35 KGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGT 86
+ N LP + W+KD + + I F + LI+ + + G Y C +
Sbjct: 134 ENNELPKLQWYKDCKPLLLD---NIHFSGVKDRLIVMNVAEKHRGNYTCHAS 182
>pdb|3SE9|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc- Pg04 In Complex With Hiv-1 Gp120
pdb|4I3R|L Chain L, Crystal Structure Of The Outer Domain Of Hiv-1 Gp120 In
Complex With Vrc-pg04 Space Group P3221
pdb|4I3S|L Chain L, Crystal Structure Of The Outer Domain Of Hiv-1 Gp120 In
Complex With Vrc-pg04 Space Group P21
Length = 208
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 64 KRSTLIITRIRSEDAGRYECR-----GTGVHKDVVSAFAEVSINLRP 105
K+ TL ITR+ ED RY C+ G G ++ A S+ + P
Sbjct: 67 KQYTLTITRMEPEDFARYYCQQLEFFGQGTRLEIRRTVAAPSVFIFP 113
>pdb|3QJH|A Chain A, The Crystal Structure Of The 5c.C7 Tcr
pdb|3QJH|C Chain C, The Crystal Structure Of The 5c.C7 Tcr
Length = 205
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 21/128 (16%)
Query: 21 SVKLRQSLRLVCRCK-GNPLPAVSWFKDNVE------------ITTNKRLKIQF--KKKR 65
++ L + RC + AV WF+ N N RLK F K++
Sbjct: 12 ALSLHEGTGSALRCNFTTTMRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSKERY 71
Query: 66 STLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPL-----DSYCLN 120
STL I + ED+G Y C + + V + + P N+ P P DS +
Sbjct: 72 STLHIRDAQLEDSGTYFCAAEASNTNKVVFGTGTRLQVLP-NIQNPDPAVYQLRDSKSSD 130
Query: 121 GGSCTYYD 128
C + D
Sbjct: 131 KSVCLFTD 138
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 35 KGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGT 86
+ N LP + W+KD + + I F + LI+ + + G Y C +
Sbjct: 131 ENNELPKLQWYKDCKPLLLD---NIHFSGVKDRLIVMNVAEKHRGNYTCHAS 179
>pdb|3QIB|C Chain C, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
pdb|3QJF|A Chain A, Crystal Structure Of The 2b4 Tcr
pdb|3QJF|C Chain C, Crystal Structure Of The 2b4 Tcr
Length = 207
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 18/85 (21%)
Query: 21 SVKLRQSLRLVCRCK-GNPLPAVSWFKDNVE------------ITTNKRLKIQFKKKRS- 66
++ L + RC + AV WF+ N N RLK F K S
Sbjct: 12 ALSLHEGTGSALRCNFTTTMRAVQWFQQNSRGSLINLFYLASGTKENGRLKSTFNSKESY 71
Query: 67 -TLIITRIRSEDAGRYEC---RGTG 87
TL I + ED+G Y C R TG
Sbjct: 72 STLHIRDAQLEDSGTYFCAALRATG 96
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 35 KGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGT 86
+ N LP + W+KD + + I F + LI+ + + G Y C +
Sbjct: 134 ENNELPKLQWYKDCKPLLLD---NIHFSGVKDRLIVMNVAEKHRGNYTCHAS 182
>pdb|2YWY|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|C Chain C, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|D Chain D, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 18 RNVSVKLRQSLRLVCRCK--GNPLPAVSWFKDNVEITTNKRLKIQFK--------KKRST 67
R+V+ + +SL + C K + L W++ + T +++ I + K +
Sbjct: 8 RSVTKETGESLTINCALKNAADDLERTDWYRTTLGSTNEQKISIGGRYVETVNKGSKSFS 67
Query: 68 LIITRIRSEDAGRYEC 83
L I +R ED+G Y+C
Sbjct: 68 LRIRDLRVEDSGTYKC 83
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 28 LRLVCRCKGNPLPAVSWFKDNVEITTN--KRLKIQFKKKRSTLIITRIRSEDAGRYEC 83
+ + C P +SWF+D + ++ +KI S L +T D G Y C
Sbjct: 36 VNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNC 93
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 35 KGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGT 86
+ N LP + W+KD + + I F + LI+ + + G Y C +
Sbjct: 136 ENNELPKLQWYKDCKPLLLD---NIHFSGVKDRLIVMNVAEKHRGNYTCHAS 184
>pdb|2FD6|A Chain A, Structure Of Human Urokinase Plasminogen Activator In
Complex With Urokinase Receptor And An Anti-Upar
Antibody At 1.9 A
Length = 122
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 19/75 (25%)
Query: 118 CLNGGSCT---YYDTVGELVCQCAEGYKGQRCE---SKDVY-----------NRSSMYKP 160
CLNGG+C Y+ + C C + + GQ CE SK Y + +M +P
Sbjct: 3 CLNGGTCVSNKYFSNI--HWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDTMGRP 60
Query: 161 YFSWIKGTVQIFNYY 175
W TV Y+
Sbjct: 61 CLPWNSATVLQQTYH 75
>pdb|2CDF|A Chain A, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide-Specific T Cell Receptors
(Tcr 5e)
Length = 191
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 50 EITTNKRLKIQF--KKKRSTLIITRIRSEDAGRYECRG 85
E+ KRL QF +K S+L IT + D G Y C G
Sbjct: 53 EVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAG 90
>pdb|3LD8|B Chain B, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|B Chain B, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 220
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Query: 67 TLIITRIRSEDAGRYECR---------GTGVHKDVVSAFAEVSINLRP 105
TL IT +++ED G+Y C+ G G ++ A A+ ++++ P
Sbjct: 78 TLTITSVQAEDMGQYFCQQGISNPYTFGAGTKLEIKRADAKPTVSIFP 125
>pdb|3BP5|B Chain B, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
pdb|3BP6|B Chain B, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
Length = 202
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTG 87
++L C+ +G PL VSW NV + N + + R++ + + + C
Sbjct: 121 VQLTCQARGYPLAEVSW--QNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWN 178
Query: 88 VH-KDVVSAFAEVSINLRP 105
H K++ SA + + P
Sbjct: 179 AHMKELTSAIIDPLSRMEP 197
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Advanced Glycosylation End Product-Specific
Receptor
Length = 96
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 27 SLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGT 86
++ L C P P + W KD V + + + I +D G Y C T
Sbjct: 27 TVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPE---------IGPQDQGTYSCVAT 77
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
CLNGG C D + C C G++G+ CE
Sbjct: 56 CLNGGLCK--DDINSYECWCQVGFEGKNCE 83
>pdb|3RNQ|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 201
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTG 87
++L C+ +G PL VSW NV + N + + R++ + + + C
Sbjct: 120 VQLTCQARGYPLAEVSW--QNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWN 177
Query: 88 VH-KDVVSAFAEVSINLRP 105
H K++ SA + + P
Sbjct: 178 AHMKELTSAIIDPLSRMEP 196
>pdb|1HAE|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
20 Structures
pdb|1HAF|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
Minimized Average Structure
Length = 63
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 116 SYCLNGGSCTYYDTVGE---LVCQCAEGYKGQRC 146
++C+NGG C + +C+C G+ G RC
Sbjct: 12 TFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARC 45
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 27 SLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGT 86
++ L C P P + W KD V + + + I +D G Y C T
Sbjct: 20 TVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPE---------IGPQDQGTYSCVAT 70
>pdb|2RNL|A Chain A, Solution Structure Of The Egf-Like Domain From Human
Amphiregulin
Length = 50
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 111 PC--PLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESK 149
PC ++C++G C Y + + + C+C + Y G+RC K
Sbjct: 11 PCNAEFQNFCIHG-ECKYIEHLEAVTCKCQQEYFGERCGEK 50
>pdb|4AEH|L Chain L, Crystal Structure Of The Anti-Aahi Fab9c2 Antibody
Length = 214
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 23/110 (20%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKD--------------NVEITTNKRLKIQFKKK 64
++SV + +++ + CR N ++W++ N+ R
Sbjct: 10 SLSVSVGETVTITCRASENIYRNLAWYQQKQGKSPQLLVYAATNLAAGVPSRFSGSGSGT 69
Query: 65 RSTLIITRIRSEDAGRYECR---------GTGVHKDVVSAFAEVSINLRP 105
+ +L I ++SED G Y C+ G+G ++ A A ++++ P
Sbjct: 70 QYSLKINSLQSEDFGSYYCQHFWNIPFTFGSGTKLEIKRADAAPTVSIFP 119
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 22 VKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQF---KKKRSTLIITRIRSED 77
+ + +S +C+ G+ +SWF N E + + +I STL I +D
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 78 AGRYECRGTG 87
AG Y+C T
Sbjct: 74 AGIYKCVVTA 83
>pdb|3QIU|C Chain C, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|C Chain C, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
Length = 205
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 21 SVKLRQSLRLVCRCK-GNPLPAVSWFKDNVE------------ITTNKRLKIQF--KKKR 65
++ L + RC + AV WF+ N N RLK F K++
Sbjct: 12 ALSLHEGTGSALRCNFTTTMRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSKERY 71
Query: 66 STLIITRIRSEDAGRYEC 83
STL I + ED+G Y C
Sbjct: 72 STLHIRDAQLEDSGTYFC 89
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 42 VSWFKDNVEITTNKRLKIQFKKKRST--LIITRIRSEDAGRYECRGTGVHK 90
+ W+KD++ + + +F R T L++ + EDAG Y C T H+
Sbjct: 157 IQWYKDSLLLDKDNE---KFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHE 204
>pdb|1HRE|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
pdb|1HRF|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
Length = 67
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 116 SYCLNGGSCTYYDTVGE---LVCQCAEGYKGQRC 146
++C+NGG C + +C+C G+ G RC
Sbjct: 14 TFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARC 47
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCES 148
S C NGGSC D + +C C ++G+ CE+
Sbjct: 53 SPCQNGGSCK--DQLQSYICFCLPAFEGRNCET 83
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 93 VSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCTYY-----DTVGELVCQCAEGYKGQRCE 147
S+ EV+ + GPC + C NGG+C DT VC+C G+ G C+
Sbjct: 36 CSSVVEVASDEEEPTSAGPC-TPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ 94
>pdb|1IOX|A Chain A, Nmr Structure Of Human Betacellulin-2
pdb|1IP0|A Chain A, Nmr Structure Of Human Betacellulin-2
Length = 50
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 112 CP--LDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVY 152
CP YC+ G C + C C EGY G RCE D++
Sbjct: 8 CPKQYKHYCIKG-RCRFVVAEQTPSCVCDEGYIGARCERVDLF 49
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCES 148
S C NGGSC D + +C C ++G+ CE+
Sbjct: 53 SPCQNGGSCK--DQLQSYICFCLPAFEGRNCET 83
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
S C N G C +GE C C EG++G+ CE
Sbjct: 9 SPCQNQGKCKX--GLGEYTCTCLEGFEGKNCE 38
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
CLNGG+C+ + C C EGY G CE
Sbjct: 140 CLNGGTCSNTGPD-KYQCSCPEGYSGPNCE 168
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCES 148
S C NGGSC D + +C C ++G+ CE+
Sbjct: 53 SPCQNGGSCK--DQLQSYICFCLPAFEGRNCET 83
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCES 148
S C NGGSC D + +C C ++G+ CE+
Sbjct: 53 SPCQNGGSCK--DQLQSYICFCLPAFEGRNCET 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,484,499
Number of Sequences: 62578
Number of extensions: 224909
Number of successful extensions: 1299
Number of sequences better than 100.0: 220
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 1011
Number of HSP's gapped (non-prelim): 325
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)