Query psy8425
Match_columns 176
No_of_seqs 276 out of 2781
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 18:33:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.9 9.9E-22 2.1E-26 160.8 13.1 143 3-152 324-512 (1051)
2 cd05762 Ig8_MLCK Eighth immuno 99.9 6.9E-21 1.5E-25 119.2 13.2 94 11-106 1-95 (98)
3 cd05851 Ig3_Contactin-1 Third 99.8 1.8E-19 3.8E-24 110.7 10.6 87 10-102 1-88 (88)
4 cd05747 Ig5_Titin_like M5, fif 99.8 6.3E-19 1.4E-23 109.2 12.3 89 9-99 2-91 (92)
5 PF07679 I-set: Immunoglobulin 99.8 2E-18 4.4E-23 106.4 13.2 89 11-101 1-90 (90)
6 KOG3513|consensus 99.8 1.2E-18 2.7E-23 142.9 15.6 139 8-153 238-420 (1051)
7 KOG4194|consensus 99.8 2E-19 4.4E-24 139.5 9.7 144 3-149 605-791 (873)
8 cd05737 Ig_Myomesin_like_C C-t 99.8 4.9E-18 1.1E-22 105.2 12.4 84 16-101 7-92 (92)
9 cd05894 Ig_C5_MyBP-C C5 immuno 99.8 1.1E-17 2.5E-22 102.1 12.1 81 19-101 4-86 (86)
10 cd04972 Ig_TrkABC_d4 Fourth do 99.8 1.4E-17 3E-22 102.7 12.2 87 13-101 3-90 (90)
11 cd04975 Ig4_SCFR_like Fourth i 99.8 1.5E-17 3.3E-22 104.4 11.7 84 17-102 10-100 (101)
12 cd05745 Ig3_Peroxidasin Third 99.8 4.7E-18 1E-22 101.0 8.9 73 24-101 1-74 (74)
13 cd04968 Ig3_Contactin_like Thi 99.8 1.5E-17 3.2E-22 102.2 11.1 87 10-102 1-88 (88)
14 cd05870 Ig5_NCAM-2 Fifth immun 99.8 2.1E-17 4.5E-22 103.5 12.0 90 9-101 1-98 (98)
15 cd05869 Ig5_NCAM-1 Fifth immun 99.8 2.5E-17 5.4E-22 103.0 12.3 91 9-101 1-97 (97)
16 cd05728 Ig4_Contactin-2-like F 99.8 9.9E-18 2.1E-22 102.3 9.6 83 13-101 2-85 (85)
17 cd05852 Ig5_Contactin-1 Fifth 99.8 1.1E-17 2.3E-22 99.1 9.1 72 25-101 1-73 (73)
18 cd05730 Ig3_NCAM-1_like Third 99.8 3.4E-17 7.5E-22 102.0 11.7 91 10-103 1-94 (95)
19 cd05892 Ig_Myotilin_C C-termin 99.7 3E-17 6.5E-22 97.5 9.5 72 28-101 1-75 (75)
20 cd05732 Ig5_NCAM-1_like Fifth 99.7 7.1E-17 1.5E-21 100.7 11.2 89 10-101 2-96 (96)
21 cd05748 Ig_Titin_like Immunogl 99.7 9E-17 2E-21 95.5 10.7 73 27-101 1-74 (74)
22 cd05891 Ig_M-protein_C C-termi 99.7 1.3E-16 2.8E-21 98.7 11.6 84 15-100 6-91 (92)
23 cd05735 Ig8_DSCAM Eight immuno 99.7 1.7E-16 3.6E-21 97.4 12.0 80 25-106 1-86 (88)
24 cd05868 Ig4_NrCAM Fourth immun 99.7 4.9E-17 1.1E-21 97.1 9.3 75 25-102 1-76 (76)
25 KOG4221|consensus 99.7 5.2E-17 1.1E-21 133.8 12.1 139 10-153 237-415 (1381)
26 cd05773 Ig8_hNephrin_like Eigh 99.7 2.5E-16 5.5E-21 100.4 12.8 98 7-106 1-109 (109)
27 cd05740 Ig_CEACAM_D4 Fourth im 99.7 1.6E-16 3.4E-21 98.0 11.2 86 11-101 2-90 (91)
28 cd05854 Ig6_Contactin-2 Sixth 99.7 1.7E-16 3.7E-21 96.7 11.2 78 26-105 1-85 (85)
29 cd05867 Ig4_L1-CAM_like Fourth 99.7 1.1E-16 2.3E-21 95.6 9.9 73 25-101 1-75 (76)
30 cd05859 Ig4_PDGFR-alpha Fourth 99.7 1.8E-16 3.8E-21 99.6 10.8 82 19-102 12-100 (101)
31 cd05743 Ig_Perlecan_D2_like Im 99.7 1.4E-16 3E-21 95.7 9.9 70 25-94 1-71 (78)
32 cd05723 Ig4_Neogenin Fourth im 99.7 1.2E-16 2.5E-21 94.2 8.9 70 27-101 1-71 (71)
33 cd05863 Ig2_VEGFR-3 Second imm 99.7 1.1E-16 2.5E-21 92.7 8.7 65 28-102 1-66 (67)
34 cd05866 Ig1_NCAM-2 First immun 99.7 5.5E-16 1.2E-20 95.6 12.2 85 14-101 4-91 (92)
35 cd04969 Ig5_Contactin_like Fif 99.7 1.6E-16 3.5E-21 94.1 9.4 72 25-101 1-73 (73)
36 cd05857 Ig2_FGFR Second immuno 99.7 2.8E-16 6.1E-21 95.8 10.5 80 20-101 4-85 (85)
37 cd05865 Ig1_NCAM-1 First immun 99.7 4.7E-16 1E-20 96.8 11.4 85 15-101 5-95 (96)
38 cd05893 Ig_Palladin_C C-termin 99.7 1.9E-16 4.1E-21 94.1 9.2 72 28-101 1-75 (75)
39 cd04978 Ig4_L1-NrCAM_like Four 99.7 2.6E-16 5.7E-21 93.9 9.4 74 25-101 1-75 (76)
40 cd07693 Ig1_Robo First immunog 99.7 6.8E-16 1.5E-20 96.8 11.7 90 10-101 1-99 (100)
41 cd05848 Ig1_Contactin-5 First 99.7 6.5E-16 1.4E-20 96.0 11.4 81 10-92 1-86 (94)
42 cd05744 Ig_Myotilin_C_like Imm 99.7 4.2E-16 9.2E-21 92.8 10.0 72 28-101 1-75 (75)
43 cd04970 Ig6_Contactin_like Six 99.7 6.2E-16 1.4E-20 94.3 10.3 78 26-105 1-85 (85)
44 cd05850 Ig1_Contactin-2 First 99.7 2.5E-15 5.3E-20 93.4 12.1 81 10-92 1-86 (94)
45 cd05864 Ig2_VEGFR-2 Second imm 99.7 4.5E-16 9.8E-21 91.2 8.2 62 28-94 1-63 (70)
46 cd05746 Ig4_Peroxidasin Fourth 99.7 4.4E-16 9.5E-21 91.2 8.1 67 28-99 1-68 (69)
47 cd04973 Ig1_FGFR First immunog 99.7 7.1E-16 1.5E-20 92.7 9.2 77 17-100 1-78 (79)
48 cd05849 Ig1_Contactin-1 First 99.7 1.7E-15 3.7E-20 93.8 10.8 79 10-92 1-85 (93)
49 cd05722 Ig1_Neogenin First imm 99.7 1.7E-15 3.6E-20 94.3 10.8 88 13-101 2-95 (95)
50 cd05760 Ig2_PTK7 Second immuno 99.7 9.9E-16 2.1E-20 91.7 9.3 74 28-102 1-75 (77)
51 cd05853 Ig6_Contactin-4 Sixth 99.7 1E-15 2.2E-20 92.7 9.4 78 26-105 1-85 (85)
52 cd04976 Ig2_VEGFR Second immun 99.7 9.9E-16 2.1E-20 90.2 9.0 69 28-102 1-70 (71)
53 cd05876 Ig3_L1-CAM Third immun 99.7 9.9E-16 2.2E-20 90.2 8.3 69 28-101 1-70 (71)
54 cd05724 Ig2_Robo Second immuno 99.7 2.6E-15 5.6E-20 91.7 10.4 81 16-100 2-85 (86)
55 cd05726 Ig4_Robo Fhird immunog 99.6 1.8E-15 3.8E-20 93.3 9.3 75 25-104 1-84 (90)
56 cd05856 Ig2_FGFRL1-like Second 99.6 1.9E-15 4.1E-20 91.4 9.3 77 20-100 4-81 (82)
57 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 3.7E-15 8E-20 89.9 10.3 65 30-94 3-75 (81)
58 cd05855 Ig_TrkB_d5 Fifth domai 99.6 3.7E-15 8E-20 89.0 10.1 65 30-94 3-73 (79)
59 cd05858 Ig3_FGFR-2 Third immun 99.6 2.9E-15 6.3E-20 92.3 9.8 75 25-101 1-89 (90)
60 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 3E-15 6.5E-20 88.9 9.3 70 28-101 1-73 (74)
61 cd05736 Ig2_Follistatin_like S 99.6 3.9E-15 8.5E-20 88.8 9.8 73 28-102 1-74 (76)
62 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 3.1E-15 6.7E-20 87.5 9.1 67 25-99 1-68 (69)
63 cd05763 Ig_1 Subgroup of the i 99.6 1.5E-15 3.3E-20 90.4 7.9 72 28-101 1-74 (75)
64 cd05749 Ig2_Tyro3_like Second 99.6 4E-15 8.8E-20 89.6 9.8 71 14-92 2-74 (81)
65 cd05758 Ig5_KIRREL3-like Fifth 99.6 1.3E-14 2.8E-19 90.8 12.4 87 10-99 2-97 (98)
66 cd04977 Ig1_NCAM-1_like First 99.6 1.3E-14 2.8E-19 89.7 11.9 83 15-100 5-91 (92)
67 cd04974 Ig3_FGFR Third immunog 99.6 3.7E-15 8E-20 91.8 9.2 76 25-102 1-90 (90)
68 cd05764 Ig_2 Subgroup of the i 99.6 6.4E-15 1.4E-19 87.4 8.9 72 25-101 1-74 (74)
69 KOG4221|consensus 99.6 1.6E-14 3.5E-19 119.4 14.0 131 6-140 136-312 (1381)
70 cd05756 Ig1_IL1R_like First im 99.6 3E-15 6.5E-20 92.8 7.6 80 18-101 7-94 (94)
71 cd05725 Ig3_Robo Third immunog 99.6 3.4E-15 7.4E-20 87.4 7.5 68 28-101 1-69 (69)
72 cd05731 Ig3_L1-CAM_like Third 99.6 7.6E-15 1.7E-19 86.3 8.3 69 28-101 1-70 (71)
73 cd07702 Ig2_VEGFR-1 Second imm 99.6 1E-14 2.2E-19 85.7 8.3 64 28-94 1-65 (72)
74 cd05733 Ig6_L1-CAM_like Sixth 99.6 1.7E-14 3.6E-19 86.3 8.2 65 28-92 1-70 (77)
75 KOG4222|consensus 99.6 1.7E-14 3.7E-19 118.7 10.6 150 9-164 30-230 (1281)
76 cd05750 Ig_Pro_neuregulin Immu 99.6 1.9E-14 4.2E-19 85.5 8.2 67 28-94 1-72 (75)
77 cd05752 Ig1_FcgammaR_like Frst 99.6 1.9E-14 4.1E-19 86.1 8.0 67 11-88 1-68 (78)
78 cd05765 Ig_3 Subgroup of the i 99.6 2E-14 4.4E-19 86.7 8.2 74 25-101 1-81 (81)
79 cd04967 Ig1_Contactin First Ig 99.6 5.1E-14 1.1E-18 86.9 9.7 79 11-91 2-85 (91)
80 cd05874 Ig6_NrCAM Sixth immuno 99.6 4.4E-14 9.5E-19 84.4 9.0 65 28-92 1-70 (77)
81 cd05875 Ig6_hNeurofascin_like 99.6 8.3E-14 1.8E-18 83.2 9.5 65 28-92 1-70 (77)
82 cd04979 Ig_Semaphorin_C Immuno 99.5 5.7E-14 1.2E-18 86.3 8.6 83 17-102 3-87 (89)
83 cd05898 Ig5_KIRREL3 Fifth immu 99.5 4.7E-13 1E-17 83.1 12.2 87 10-99 2-97 (98)
84 cd07701 Ig1_Necl-3 First (N-te 99.5 2E-13 4.3E-18 84.8 10.4 83 17-101 4-95 (95)
85 KOG4194|consensus 99.5 3.9E-14 8.4E-19 110.6 8.2 140 9-150 502-700 (873)
86 cd05754 Ig3_Perlecan_like Thir 99.5 1.3E-13 2.8E-18 84.0 8.7 79 13-99 4-84 (85)
87 PHA02826 IL-1 receptor-like pr 99.5 3E-13 6.5E-18 96.7 11.9 86 17-104 29-135 (227)
88 cd05729 Ig2_FGFR_like Second i 99.5 6.7E-13 1.5E-17 80.6 10.7 79 20-100 4-84 (85)
89 cd05742 Ig1_VEGFR_like First i 99.5 3E-13 6.4E-18 82.2 8.7 75 25-101 1-83 (84)
90 cd05882 Ig1_Necl-1 First (N-te 99.5 1.1E-12 2.5E-17 81.3 11.4 82 17-100 4-94 (95)
91 cd05895 Ig_Pro_neuregulin-1 Im 99.5 3.1E-13 6.7E-18 80.6 8.6 67 28-94 1-73 (76)
92 cd05734 Ig7_DSCAM Seventh immu 99.5 2.7E-13 5.9E-18 81.4 8.1 70 28-101 1-79 (79)
93 cd05861 Ig1_PDGFR-alphabeta Fr 99.5 6.1E-13 1.3E-17 80.8 9.6 78 25-102 1-83 (84)
94 cd05873 Ig_Sema4D_like Immunog 99.5 5.5E-13 1.2E-17 81.1 9.1 67 17-88 3-70 (87)
95 KOG4222|consensus 99.5 1.4E-13 3.1E-18 113.4 7.8 141 3-149 218-406 (1281)
96 PHA02785 IL-beta-binding prote 99.4 1.7E-12 3.8E-17 97.8 11.8 117 20-144 36-202 (326)
97 cd05757 Ig2_IL1R_like Second i 99.4 1.2E-12 2.6E-17 80.8 8.7 72 19-94 4-81 (92)
98 cd05753 Ig2_FcgammaR_like Seco 99.4 1E-12 2.2E-17 79.7 7.8 74 19-100 8-82 (83)
99 cd05717 Ig1_Necl-1-3_like Firs 99.4 7.1E-12 1.5E-16 77.9 10.1 83 17-101 4-95 (95)
100 cd05727 Ig2_Contactin-2-like S 99.4 1.4E-12 3E-17 80.5 6.6 70 17-88 10-82 (96)
101 smart00410 IG_like Immunoglobu 99.4 3.2E-11 6.9E-16 72.5 12.1 82 18-101 2-85 (86)
102 smart00409 IG Immunoglobulin. 99.4 3.2E-11 6.9E-16 72.5 12.1 82 18-101 2-85 (86)
103 PF13895 Ig_2: Immunoglobulin 99.4 1.7E-11 3.7E-16 73.3 10.6 80 10-101 1-80 (80)
104 cd05871 Ig_Semaphorin_classIII 99.4 6.2E-12 1.3E-16 77.5 8.3 78 19-103 5-90 (91)
105 PHA02785 IL-beta-binding prote 99.4 7.7E-12 1.7E-16 94.3 10.1 81 17-102 128-216 (326)
106 PHA02826 IL-1 receptor-like pr 99.3 2.7E-11 5.8E-16 86.7 11.4 69 18-88 137-210 (227)
107 smart00408 IGc2 Immunoglobulin 99.3 1.3E-11 2.8E-16 70.1 7.4 61 24-88 1-61 (63)
108 cd07690 Ig1_CD4 First immunogl 99.3 1.6E-11 3.4E-16 75.9 7.6 69 20-88 2-87 (94)
109 cd05845 Ig2_L1-CAM_like Second 99.3 1E-11 2.2E-16 76.5 6.6 69 17-88 10-81 (95)
110 cd05881 Ig1_Necl-2 First (N-te 99.3 1.1E-10 2.4E-15 72.1 11.1 78 17-94 4-90 (95)
111 PF00047 ig: Immunoglobulin do 99.2 5.7E-11 1.2E-15 68.2 6.9 61 25-85 1-64 (64)
112 cd05860 Ig4_SCFR Fourth immuno 99.2 4.3E-10 9.2E-15 69.7 10.9 83 18-102 11-100 (101)
113 cd05862 Ig1_VEGFR First immuno 99.2 1.2E-10 2.6E-15 71.0 8.5 76 25-102 1-85 (86)
114 cd05897 Ig2_IL1R2_like Second 99.2 1.8E-10 3.8E-15 71.2 8.7 72 20-92 5-82 (95)
115 cd05872 Ig_Sema4B_like Immunog 99.1 5E-10 1.1E-14 67.7 8.1 72 18-94 4-75 (85)
116 cd05759 Ig2_KIRREL3-like Secon 99.1 1E-09 2.3E-14 66.2 9.1 61 28-88 2-68 (82)
117 cd05751 Ig1_LILRB1_like First 99.1 5.4E-10 1.2E-14 68.8 7.7 87 10-101 2-90 (91)
118 cd05885 Ig2_Necl-4 Second immu 99.1 9.9E-10 2.1E-14 65.5 8.0 61 28-88 2-65 (80)
119 PF13927 Ig_3: Immunoglobulin 99.1 6E-10 1.3E-14 65.6 7.1 74 10-87 1-75 (75)
120 cd04983 IgV_TCR_alpha_like Imm 99.1 1.2E-09 2.6E-14 69.5 8.7 74 15-88 3-92 (109)
121 cd05879 Ig_P0 Immunoglobulin ( 99.1 3.1E-09 6.8E-14 68.2 10.3 73 16-88 4-102 (116)
122 cd05896 Ig1_IL1RAPL-1_like Fir 99.1 9.5E-10 2.1E-14 68.4 7.4 77 18-94 8-99 (104)
123 cd04980 IgV_L_kappa Immunoglob 99.0 5.2E-09 1.1E-13 66.2 9.6 76 13-88 3-93 (106)
124 cd05899 IgV_TCR_beta Immunoglo 99.0 2.6E-09 5.7E-14 68.1 7.9 73 15-88 3-94 (110)
125 cd00099 IgV Immunoglobulin var 99.0 6.2E-09 1.3E-13 65.6 8.5 68 21-88 2-89 (105)
126 cd05714 Ig_CSPGs_LP Immunoglob 99.0 1.5E-08 3.2E-13 64.2 9.7 78 24-103 1-104 (106)
127 cd05880 Ig_EVA1 Immunoglobulin 98.9 1.7E-08 3.6E-13 64.9 9.8 73 16-88 4-101 (115)
128 cd05774 Ig_CEACAM_D1 First imm 98.9 1.2E-08 2.6E-13 64.3 8.2 73 19-94 7-98 (105)
129 cd04982 IgV_TCR_gamma Immunogl 98.9 1.2E-08 2.7E-13 65.6 8.4 73 16-88 4-99 (116)
130 cd05775 Ig_SLAM-CD84_like_N N- 98.9 1.4E-08 3.1E-13 63.2 8.3 79 23-101 2-96 (97)
131 cd05900 Ig_Aggrecan Immunoglob 98.9 3E-08 6.6E-13 63.2 9.5 77 24-102 1-109 (112)
132 cd05741 Ig_CEACAM_D1_like Firs 98.9 1.4E-08 3.1E-13 62.5 7.5 69 25-94 1-85 (92)
133 cd05713 Ig_MOG_like Immunoglob 98.9 3E-08 6.6E-13 62.0 9.2 75 25-101 1-99 (100)
134 cd05715 Ig_P0-like Immunoglobu 98.9 4.1E-08 8.8E-13 63.2 9.8 73 16-88 4-102 (116)
135 cd05718 Ig1_PVR_like First imm 98.9 3.8E-08 8.2E-13 61.3 9.1 74 26-101 1-97 (98)
136 cd04984 IgV_L_lambda Immunoglo 98.8 4.4E-08 9.5E-13 61.1 8.7 68 21-88 2-85 (98)
137 cd05877 Ig_LP_like Immunoglobu 98.8 1.1E-07 2.3E-12 60.2 10.3 77 24-102 1-103 (106)
138 cd05878 Ig_Aggrecan_like Immun 98.8 9.9E-08 2.2E-12 60.8 9.8 78 24-103 1-108 (110)
139 cd05711 Ig_FcalphaRI Immunoglo 98.8 3.4E-08 7.3E-13 61.2 7.1 74 11-86 2-75 (94)
140 cd05883 Ig2_Necl-2 Second immu 98.8 1.2E-07 2.7E-12 56.7 9.2 74 28-103 2-81 (82)
141 PF07686 V-set: Immunoglobulin 98.7 5.1E-07 1.1E-11 57.3 10.9 74 15-88 6-101 (114)
142 cd07706 IgV_TCR_delta Immunogl 98.7 2E-07 4.4E-12 59.9 8.7 75 14-88 3-94 (116)
143 cd07694 Ig2_CD4 Second immunog 98.7 3E-07 6.4E-12 55.2 8.5 63 20-88 9-73 (88)
144 PHA02987 Ig domain OX-2-like p 98.7 3E-07 6.5E-12 62.7 9.5 86 17-104 22-124 (189)
145 cd05846 Ig1_MRC-OX-2_like Firs 98.7 4.1E-07 8.8E-12 56.6 8.9 75 25-101 1-96 (97)
146 cd05902 Ig_Neurocan Immunoglob 98.6 8.2E-07 1.8E-11 56.4 10.0 77 24-102 1-107 (110)
147 cd05716 Ig_pIgR Immunoglobulin 98.6 5.1E-07 1.1E-11 56.2 8.6 70 20-89 2-87 (98)
148 cd07705 Ig2_Necl-1 Second immu 98.6 1.4E-06 3E-11 52.6 9.4 60 28-88 2-68 (83)
149 cd07700 IgV_CD8_beta Immunoglo 98.6 9.7E-07 2.1E-11 55.9 8.9 67 21-87 2-93 (107)
150 cd05761 Ig2_Necl-1-4_like Seco 98.6 1.4E-06 3E-11 52.5 9.1 60 28-88 2-67 (82)
151 cd05712 Ig_Siglec_N Immunoglob 98.6 7.1E-07 1.5E-11 57.7 8.3 74 15-88 4-102 (119)
152 cd05887 Ig1_Nectin-3_like Firs 98.5 1.2E-06 2.7E-11 54.2 8.8 74 26-101 1-95 (96)
153 cd00098 IgC Immunoglobulin Con 98.5 4.3E-07 9.4E-12 56.1 6.4 66 23-88 11-84 (95)
154 cd05888 Ig1_Nectin-4_like Frst 98.5 1.7E-06 3.7E-11 54.1 9.0 73 27-101 2-99 (100)
155 cd05771 IgC_Tapasin_R Tapasin- 98.5 1.1E-06 2.3E-11 58.4 8.4 85 4-88 32-130 (139)
156 cd05901 Ig_Versican Immunoglob 98.5 4.8E-06 1E-10 53.3 10.7 37 64-102 77-114 (117)
157 cd05755 Ig2_ICAM-1_like Second 98.5 1.4E-06 3E-11 54.3 7.7 70 18-88 9-84 (100)
158 cd05720 Ig_CD8_alpha Immunoglo 98.5 1E-06 2.2E-11 55.6 7.0 67 21-87 2-90 (104)
159 cd05886 Ig1_Nectin-1_like Firs 98.4 5.8E-06 1.3E-10 51.5 9.6 36 64-101 61-98 (99)
160 cd04981 IgV_H Immunoglobulin ( 98.4 2.7E-06 5.9E-11 54.8 8.2 72 16-87 3-97 (117)
161 cd05884 Ig2_Necl-3 Second immu 98.4 5.3E-06 1.1E-10 50.0 8.1 61 28-88 2-68 (83)
162 cd00096 Ig Immunoglobulin doma 98.3 3.6E-06 7.7E-11 47.8 6.4 61 28-88 1-65 (74)
163 KOG3515|consensus 98.3 2.9E-06 6.2E-11 69.4 7.2 90 11-106 8-99 (741)
164 PHA03376 BARF1; Provisional 98.3 2.2E-05 4.8E-10 53.8 10.1 70 19-88 20-109 (221)
165 cd07698 IgC_MHC_I_alpha3 Class 98.2 1.9E-05 4.1E-10 48.7 8.4 63 25-88 14-82 (93)
166 cd05889 Ig1_DNAM-1_like First 98.2 4.4E-05 9.4E-10 47.3 9.7 63 26-88 1-82 (96)
167 cd05772 IgC_SIRP Signal-regula 98.2 5E-05 1.1E-09 48.4 10.1 67 20-88 16-91 (111)
168 PF08205 C2-set_2: CD80-like C 98.2 2.4E-05 5.3E-10 47.6 8.1 64 25-88 14-83 (89)
169 cd05771 IgC_Tapasin_R Tapasin- 98.1 1E-05 2.2E-10 53.7 6.0 72 67-150 2-76 (139)
170 smart00406 IGv Immunoglobulin 98.1 2E-05 4.3E-10 46.8 6.7 58 27-84 1-80 (81)
171 cd05770 IgC_beta2m Class I maj 98.0 7.6E-05 1.7E-09 45.9 8.2 65 23-88 13-82 (93)
172 cd05767 IgC_MHC_II_alpha Class 98.0 0.00013 2.7E-09 45.1 8.9 64 23-89 13-84 (94)
173 smart00407 IGc1 Immunoglobulin 98.0 0.00012 2.5E-09 43.2 8.1 61 28-88 2-70 (75)
174 PHA03099 epidermal growth fact 97.9 1.7E-05 3.8E-10 50.4 4.3 44 110-154 43-88 (139)
175 cd05766 IgC_MHC_II_beta Class 97.9 0.00014 3E-09 44.9 7.9 63 23-88 12-82 (94)
176 cd07691 Ig_CD3_gamma_delta Imm 97.9 4.8E-05 1E-09 43.4 5.0 49 25-87 6-54 (69)
177 cd07699 IgC_L Immunoglobulin C 97.8 9.3E-05 2E-09 46.2 6.4 72 17-88 9-88 (100)
178 cd05768 IgC_CH4 CH4 domain (fo 97.8 0.0001 2.2E-09 46.2 6.5 68 21-88 12-90 (102)
179 cd07692 Ig_CD3_epsilon Immunog 97.8 5E-05 1.1E-09 43.0 4.4 52 23-88 5-56 (65)
180 cd05719 Ig2_PVR_like Second im 97.7 0.00048 1E-08 42.6 8.4 60 26-88 16-81 (95)
181 cd05847 IgC_CH2_IgE CH2 domain 97.7 0.00028 6E-09 43.6 7.1 66 24-89 13-86 (94)
182 cd07697 IgC_TCR_gamma T cell r 97.7 0.00045 9.8E-09 42.8 7.9 66 22-89 13-85 (96)
183 PHA02887 EGF-like protein; Pro 97.7 5E-05 1.1E-09 47.5 3.3 40 109-149 83-124 (126)
184 cd07696 IgC_CH3 CH3 domain (th 97.6 0.00079 1.7E-08 41.7 8.3 68 20-88 9-85 (96)
185 cd05769 IgC_TCR_beta T cell re 97.6 0.0009 1.9E-08 42.9 8.1 76 16-91 9-94 (115)
186 cd07703 Ig2_Nectin-2_like Seco 97.6 0.0009 2E-08 41.3 7.8 66 26-94 16-88 (95)
187 PF07654 C1-set: Immunoglobuli 97.5 0.0014 3.1E-08 39.3 8.2 62 24-88 7-76 (83)
188 cd05721 IgV_CTLA-4 Immunoglobu 97.5 0.0014 3E-08 41.7 8.1 68 18-85 6-93 (115)
189 PHA02633 hypothetical protein; 97.5 0.00041 9E-09 38.7 4.6 40 64-105 16-56 (63)
190 cd04986 IgC_CH2 CH2 domain (se 97.3 0.00096 2.1E-08 41.5 5.3 72 14-88 8-88 (99)
191 cd07704 Ig2_Nectin-3-4_like Se 97.2 0.0029 6.3E-08 39.2 6.7 68 18-88 9-83 (97)
192 cd05852 Ig5_Contactin-1 Fifth 97.0 0.00075 1.6E-08 39.5 3.1 29 117-146 34-66 (73)
193 cd05855 Ig_TrkB_d5 Fifth domai 97.0 0.00065 1.4E-08 40.5 2.7 24 122-146 44-71 (79)
194 cd04985 IgC_CH1 CH1 domain (fi 97.0 0.004 8.6E-08 38.5 6.3 65 24-89 15-87 (95)
195 KOG1480|consensus 97.0 0.00025 5.3E-09 58.1 1.0 73 13-88 132-205 (909)
196 cd05725 Ig3_Robo Third immunog 96.9 0.0015 3.3E-08 37.5 3.5 28 117-145 30-61 (69)
197 cd05745 Ig3_Peroxidasin Third 96.9 0.00091 2E-08 39.1 2.5 28 117-145 35-66 (74)
198 cd05851 Ig3_Contactin-1 Third 96.9 0.0013 2.7E-08 40.0 3.2 29 116-145 47-79 (88)
199 cd05876 Ig3_L1-CAM Third immun 96.9 0.00083 1.8E-08 39.0 2.2 27 118-145 32-62 (71)
200 PF07354 Sp38: Zona-pellucida- 96.8 0.0021 4.7E-08 46.4 4.5 48 38-88 11-59 (271)
201 PF00008 EGF: EGF-like domain 96.8 0.0012 2.7E-08 32.0 2.3 28 117-145 5-32 (32)
202 cd05849 Ig1_Contactin-1 First 96.8 0.0021 4.5E-08 39.5 3.6 29 116-145 51-84 (93)
203 cd05723 Ig4_Neogenin Fourth im 96.8 0.00099 2.2E-08 38.6 2.1 27 118-145 33-63 (71)
204 cd05746 Ig4_Peroxidasin Fourth 96.8 0.0016 3.5E-08 37.5 2.9 26 119-145 33-62 (69)
205 PF08204 V-set_CD47: CD47 immu 96.7 0.0041 8.9E-08 40.5 4.7 78 21-101 23-119 (130)
206 PHA02982 hypothetical protein; 96.7 0.0072 1.6E-07 42.3 6.0 70 19-88 33-122 (251)
207 cd05863 Ig2_VEGFR-3 Second imm 96.7 0.00041 9E-09 39.9 -0.0 23 121-144 30-56 (67)
208 cd04971 Ig_TrKABC_d5 Fifth dom 96.7 0.0018 3.9E-08 38.7 2.7 23 122-145 46-72 (81)
209 KOG3515|consensus 96.6 0.0072 1.6E-07 50.2 6.7 102 3-106 393-497 (741)
210 cd05867 Ig4_L1-CAM_like Fourth 96.6 0.0022 4.9E-08 37.6 2.6 29 116-145 35-67 (76)
211 cd05848 Ig1_Contactin-5 First 96.5 0.003 6.5E-08 38.8 3.2 30 116-146 52-86 (94)
212 cd05893 Ig_Palladin_C C-termin 96.5 0.0017 3.7E-08 38.2 1.9 22 123-145 42-67 (75)
213 cd05738 Ig2_RPTP_IIa_LAR_like 96.5 0.0025 5.4E-08 37.3 2.5 28 118-146 34-65 (74)
214 cd04974 Ig3_FGFR Third immunog 96.5 0.0038 8.2E-08 38.0 3.4 25 121-146 54-82 (90)
215 cd05850 Ig1_Contactin-2 First 96.4 0.0044 9.5E-08 38.1 3.4 30 116-146 52-86 (94)
216 cd07689 Ig2_VCAM-1 Second immu 96.4 0.02 4.4E-07 35.4 6.2 65 22-88 12-85 (99)
217 cd05763 Ig_1 Subgroup of the i 96.4 0.0046 9.9E-08 36.1 3.3 25 120-145 38-66 (75)
218 cd04969 Ig5_Contactin_like Fif 96.4 0.0037 8E-08 36.3 2.8 28 117-145 34-65 (73)
219 PF11465 Receptor_2B4: Natural 96.4 0.06 1.3E-06 33.7 8.0 43 59-102 64-107 (108)
220 cd05892 Ig_Myotilin_C C-termin 96.4 0.0042 9.2E-08 36.5 2.9 23 123-146 42-68 (75)
221 cd05739 Ig3_RPTP_IIa_LAR_like 96.3 0.0048 1E-07 35.6 2.7 24 121-145 37-62 (69)
222 KOG4597|consensus 96.2 0.0062 1.3E-07 47.6 3.9 88 13-102 199-292 (560)
223 cd04976 Ig2_VEGFR Second immun 96.2 0.0042 9.2E-08 36.0 2.3 27 117-144 30-60 (71)
224 cd05868 Ig4_NrCAM Fourth immun 96.2 0.0046 1E-07 36.3 2.4 28 118-146 37-68 (76)
225 cd05864 Ig2_VEGFR-2 Second imm 96.2 0.0062 1.3E-07 35.3 2.9 25 120-145 32-60 (70)
226 cd05748 Ig_Titin_like Immunogl 96.2 0.0026 5.7E-08 37.0 1.3 23 122-145 40-66 (74)
227 cd05760 Ig2_PTK7 Second immuno 96.2 0.0046 1E-07 36.4 2.4 27 120-147 36-66 (77)
228 cd05870 Ig5_NCAM-2 Fifth immun 96.2 0.038 8.2E-07 34.1 6.6 23 122-145 64-90 (98)
229 cd05731 Ig3_L1-CAM_like Third 96.1 0.0032 7E-08 36.2 1.6 25 120-145 34-62 (71)
230 cd05764 Ig_2 Subgroup of the i 96.1 0.0076 1.7E-07 35.0 3.2 28 117-145 35-66 (74)
231 cd05874 Ig6_NrCAM Sixth immuno 96.1 0.0078 1.7E-07 35.5 3.1 26 119-145 36-69 (77)
232 cd05875 Ig6_hNeurofascin_like 96.1 0.0083 1.8E-07 35.4 3.1 27 119-146 36-70 (77)
233 cd05733 Ig6_L1-CAM_like Sixth 96.0 0.011 2.3E-07 34.8 3.6 27 119-146 36-70 (77)
234 PF12661 hEGF: Human growth fa 96.0 0.0053 1.1E-07 23.3 1.3 13 134-146 1-13 (13)
235 cd05734 Ig7_DSCAM Seventh immu 95.9 0.013 2.7E-07 34.6 3.4 26 119-145 41-70 (79)
236 PHA03270 envelope glycoprotein 95.9 0.098 2.1E-06 40.7 8.7 46 6-53 217-265 (466)
237 cd04968 Ig3_Contactin_like Thi 95.9 0.0093 2E-07 36.0 2.8 27 118-145 49-79 (88)
238 cd05744 Ig_Myotilin_C_like Imm 95.8 0.011 2.5E-07 34.6 3.0 23 123-146 42-68 (75)
239 PHA03042 CD47-like protein; Pr 95.8 0.084 1.8E-06 38.6 7.7 60 22-88 28-92 (286)
240 cd07702 Ig2_VEGFR-1 Second imm 95.8 0.0074 1.6E-07 35.2 2.0 25 116-141 30-58 (72)
241 cd05728 Ig4_Contactin-2-like F 95.8 0.0094 2E-07 35.8 2.5 29 116-145 45-77 (85)
242 KOG1219|consensus 95.7 0.012 2.6E-07 54.2 3.9 37 110-149 3904-3940(4289)
243 cd05869 Ig5_NCAM-1 Fifth immun 95.7 0.0097 2.1E-07 36.7 2.4 23 122-145 63-89 (97)
244 cd05749 Ig2_Tyro3_like Second 95.7 0.012 2.6E-07 35.2 2.6 24 121-145 48-73 (81)
245 cd05735 Ig8_DSCAM Eight immuno 95.6 0.0097 2.1E-07 36.1 2.2 23 123-146 48-74 (88)
246 cd04973 Ig1_FGFR First immunog 95.6 0.016 3.5E-07 34.2 3.1 28 116-144 39-70 (79)
247 cd05762 Ig8_MLCK Eighth immuno 95.6 0.0094 2E-07 36.9 2.0 28 122-150 56-87 (98)
248 cd05740 Ig_CEACAM_D4 Fourth im 95.6 0.0088 1.9E-07 36.5 1.9 25 120-145 53-81 (91)
249 cd05866 Ig1_NCAM-2 First immun 95.6 0.012 2.6E-07 36.0 2.5 23 123-146 57-83 (92)
250 smart00179 EGF_CA Calcium-bind 95.4 0.021 4.6E-07 28.5 2.8 29 117-147 10-39 (39)
251 cd05854 Ig6_Contactin-2 Sixth 95.4 0.011 2.4E-07 35.6 1.8 26 120-146 45-74 (85)
252 cd05765 Ig_3 Subgroup of the i 95.3 0.018 4E-07 33.9 2.7 26 119-145 44-73 (81)
253 cd04970 Ig6_Contactin_like Six 95.3 0.011 2.4E-07 35.4 1.8 25 120-145 45-73 (85)
254 cd05756 Ig1_IL1R_like First im 95.3 0.022 4.9E-07 35.0 3.0 28 116-144 54-85 (94)
255 PF06328 Lep_receptor_Ig: Ig-l 95.2 0.26 5.6E-06 30.0 7.5 68 17-86 10-82 (89)
256 cd05726 Ig4_Robo Fhird immunog 95.2 0.018 4E-07 34.9 2.5 27 119-146 44-74 (90)
257 cd05724 Ig2_Robo Second immuno 95.1 0.024 5.2E-07 33.8 2.8 28 118-146 47-78 (86)
258 cd04978 Ig4_L1-NrCAM_like Four 95.1 0.019 4E-07 33.4 2.1 28 117-145 36-67 (76)
259 cd00054 EGF_CA Calcium-binding 94.8 0.046 9.9E-07 26.9 2.8 29 117-147 10-38 (38)
260 cd05750 Ig_Pro_neuregulin Immu 94.7 0.021 4.6E-07 33.1 1.7 18 127-145 52-69 (75)
261 cd05853 Ig6_Contactin-4 Sixth 94.7 0.017 3.6E-07 34.9 1.3 29 120-149 45-77 (85)
262 PHA03273 envelope glycoprotein 94.7 0.62 1.3E-05 36.8 9.8 79 8-88 235-324 (486)
263 cd05895 Ig_Pro_neuregulin-1 Im 94.7 0.021 4.6E-07 33.3 1.6 23 122-145 44-70 (76)
264 cd04972 Ig_TrkABC_d4 Fourth do 94.5 0.02 4.4E-07 34.7 1.4 23 122-145 56-82 (90)
265 cd05865 Ig1_NCAM-1 First immun 94.4 0.026 5.6E-07 34.9 1.7 21 122-143 60-84 (96)
266 PF05790 C2-set: Immunoglobuli 94.4 0.55 1.2E-05 27.9 7.3 38 39-86 26-63 (80)
267 cd05858 Ig3_FGFR-2 Third immun 94.4 0.022 4.7E-07 34.6 1.2 24 122-146 55-82 (90)
268 cd04967 Ig1_Contactin First Ig 94.2 0.055 1.2E-06 32.8 2.8 30 116-146 52-86 (91)
269 cd04977 Ig1_NCAM-1_like First 94.1 0.039 8.5E-07 33.6 2.0 22 123-145 58-83 (92)
270 cd05732 Ig5_NCAM-1_like Fifth 94.0 0.038 8.3E-07 33.7 1.9 22 123-145 63-88 (96)
271 cd00053 EGF Epidermal growth f 94.0 0.078 1.7E-06 25.5 2.7 28 118-147 8-36 (36)
272 cd05730 Ig3_NCAM-1_like Third 94.0 0.039 8.4E-07 33.7 1.8 25 120-145 56-84 (95)
273 cd05894 Ig_C5_MyBP-C C5 immuno 93.9 0.037 8.1E-07 33.3 1.6 23 122-145 52-78 (86)
274 cd05757 Ig2_IL1R_like Second i 93.9 0.04 8.7E-07 33.7 1.7 24 120-144 50-77 (92)
275 cd05857 Ig2_FGFR Second immuno 93.7 0.3 6.4E-06 28.9 5.3 24 121-145 50-77 (85)
276 cd05742 Ig1_VEGFR_like First i 93.6 0.046 1E-06 32.6 1.7 23 122-145 49-75 (84)
277 cd04975 Ig4_SCFR_like Fourth i 93.6 0.038 8.3E-07 34.5 1.3 22 122-144 65-90 (101)
278 cd05722 Ig1_Neogenin First imm 93.6 0.13 2.7E-06 31.5 3.6 29 116-145 48-86 (95)
279 cd05736 Ig2_Follistatin_like S 93.5 0.066 1.4E-06 31.2 2.2 23 123-146 40-66 (76)
280 KOG1219|consensus 93.4 0.064 1.4E-06 49.9 2.7 43 110-154 3865-3907(4289)
281 PHA03052 Hypothetical protein; 93.4 0.26 5.6E-06 28.1 4.2 36 17-52 4-42 (69)
282 cd05727 Ig2_Contactin-2-like S 93.4 0.086 1.9E-06 32.6 2.6 25 120-145 58-86 (96)
283 cd05743 Ig_Perlecan_D2_like Im 93.4 0.035 7.6E-07 32.6 0.8 23 122-145 42-68 (78)
284 cd05861 Ig1_PDGFR-alphabeta Fr 93.2 0.061 1.3E-06 32.2 1.7 25 123-148 47-75 (84)
285 PHA02865 MHC-like TNF binding 93.2 0.65 1.4E-05 35.4 7.3 39 5-47 198-238 (338)
286 cd05747 Ig5_Titin_like M5, fif 93.1 0.067 1.5E-06 32.5 1.9 23 122-145 59-85 (92)
287 PHA02914 Immunoglobulin-like d 93.0 0.74 1.6E-05 35.8 7.5 71 18-88 272-368 (500)
288 cd05754 Ig3_Perlecan_like Thir 92.8 0.071 1.5E-06 31.8 1.6 26 119-145 49-78 (85)
289 cd05856 Ig2_FGFRL1-like Second 92.7 0.068 1.5E-06 31.3 1.4 22 122-144 48-73 (82)
290 cd05737 Ig_Myomesin_like_C C-t 92.5 0.066 1.4E-06 32.5 1.2 22 123-145 59-84 (92)
291 PHA03189 UL14 tegument protein 92.4 2.4 5.1E-05 31.8 9.1 76 17-92 59-160 (348)
292 cd07693 Ig1_Robo First immunog 92.3 0.071 1.5E-06 32.5 1.1 19 127-146 73-91 (100)
293 cd05845 Ig2_L1-CAM_like Second 92.2 0.31 6.6E-06 30.1 3.8 29 116-145 52-85 (95)
294 cd05862 Ig1_VEGFR First immuno 92.2 0.11 2.4E-06 31.2 1.9 22 122-144 50-75 (86)
295 smart00408 IGc2 Immunoglobulin 92.1 0.21 4.5E-06 27.0 2.9 23 120-143 37-63 (63)
296 cd05859 Ig4_PDGFR-alpha Fourth 92.1 0.073 1.6E-06 33.2 1.1 23 122-145 65-91 (101)
297 smart00181 EGF Epidermal growt 91.6 0.21 4.6E-06 24.1 2.3 23 123-147 12-35 (35)
298 PHA02914 Immunoglobulin-like d 91.6 3.5 7.7E-05 32.2 9.5 85 19-106 20-119 (500)
299 cd05873 Ig_Sema4D_like Immunog 91.5 0.13 2.8E-06 31.2 1.6 25 116-141 42-70 (87)
300 cd05896 Ig1_IL1RAPL-1_like Fir 91.3 0.3 6.5E-06 30.6 3.1 26 116-142 64-93 (104)
301 cd05891 Ig_M-protein_C C-termi 91.3 0.11 2.4E-06 31.6 1.2 18 127-145 67-84 (92)
302 cd05773 Ig8_hNephrin_like Eigh 91.0 0.17 3.6E-06 32.0 1.8 23 122-145 69-96 (109)
303 PF06832 BiPBP_C: Penicillin-B 90.4 2.6 5.6E-05 25.4 9.9 69 8-88 8-80 (89)
304 cd05871 Ig_Semaphorin_classIII 90.3 0.31 6.7E-06 29.7 2.6 27 116-143 47-78 (91)
305 cd05753 Ig2_FcgammaR_like Seco 89.8 0.23 5.1E-06 29.6 1.7 25 121-146 47-75 (83)
306 cd07690 Ig1_CD4 First immunogl 89.4 0.22 4.7E-06 30.6 1.3 21 123-144 66-90 (94)
307 cd05758 Ig5_KIRREL3-like Fifth 89.2 0.29 6.3E-06 30.0 1.9 22 123-145 65-91 (98)
308 KOG4289|consensus 89.0 0.28 6.1E-06 44.0 2.1 33 116-150 1245-1277(2531)
309 cd04979 Ig_Semaphorin_C Immuno 88.6 0.35 7.6E-06 29.0 1.9 27 117-144 46-76 (89)
310 KOG1026|consensus 88.6 0.96 2.1E-05 38.3 4.8 74 19-104 201-275 (774)
311 PF07679 I-set: Immunoglobulin 88.0 0.22 4.7E-06 29.7 0.7 18 127-145 65-82 (90)
312 cd05897 Ig2_IL1R2_like Second 87.7 0.32 6.9E-06 30.0 1.3 23 121-144 54-80 (95)
313 PF03921 ICAM_N: Intercellular 86.5 5.5 0.00012 24.3 10.2 81 14-106 7-90 (91)
314 cd05886 Ig1_Nectin-1_like Firs 85.9 0.65 1.4E-05 28.8 2.0 24 120-144 61-88 (99)
315 cd05741 Ig_CEACAM_D1_like Firs 85.6 0.79 1.7E-05 27.5 2.3 27 118-145 53-83 (92)
316 PF12662 cEGF: Complement Clr- 85.3 0.8 1.7E-05 20.5 1.6 12 132-143 1-12 (24)
317 cd07701 Ig1_Necl-3 First (N-te 84.3 0.79 1.7E-05 28.1 1.8 21 122-143 62-86 (95)
318 cd05888 Ig1_Nectin-4_like Frst 84.0 0.89 1.9E-05 28.1 2.0 23 121-144 63-89 (100)
319 PF07974 EGF_2: EGF-like domai 83.9 1 2.2E-05 21.7 1.7 27 116-146 6-32 (32)
320 PF07645 EGF_CA: Calcium-bindi 83.9 1.4 3E-05 22.5 2.4 23 118-142 12-34 (42)
321 PF02440 Adeno_E3_CR1: Adenovi 83.3 4.1 8.9E-05 23.0 4.2 21 22-46 2-22 (63)
322 cd05774 Ig_CEACAM_D1 First imm 82.6 1.7 3.7E-05 27.3 2.9 26 115-141 63-92 (105)
323 cd05898 Ig5_KIRREL3 Fifth immu 82.1 1.3 2.9E-05 27.4 2.2 16 129-145 76-91 (98)
324 PHA03269 envelope glycoprotein 80.1 30 0.00065 28.1 11.1 33 21-53 338-373 (566)
325 PF12947 EGF_3: EGF domain; I 80.0 1.4 3.1E-05 21.8 1.5 23 120-144 10-32 (36)
326 PHA03271 envelope glycoprotein 79.5 29 0.00064 27.5 11.1 68 21-88 256-334 (490)
327 PHA03282 envelope glycoprotein 78.4 7.2 0.00016 31.2 5.5 25 64-88 122-146 (540)
328 cd05879 Ig_P0 Immunoglobulin ( 78.3 1.9 4.1E-05 27.6 2.1 21 122-143 80-104 (116)
329 PHA03283 envelope glycoprotein 73.9 12 0.00026 30.4 5.7 47 63-110 131-177 (542)
330 cd05890 Ig2_Nectin-1_like Seco 71.7 14 0.00031 22.8 4.5 58 28-88 23-86 (98)
331 PHA03240 envelope glycoprotein 71.3 8.1 0.00018 27.5 3.8 64 19-82 32-121 (258)
332 KOG4289|consensus 70.4 5 0.00011 36.8 3.2 49 114-164 1505-1553(2531)
333 KOG1214|consensus 70.3 14 0.00029 32.1 5.5 38 107-144 781-820 (1289)
334 KOG0613|consensus 69.6 3.4 7.3E-05 36.9 2.1 78 17-94 341-422 (1205)
335 PF11049 KSHV_K1: Glycoprotein 69.0 16 0.00034 20.8 4.0 58 29-105 2-59 (71)
336 PF14670 FXa_inhibition: Coagu 64.4 5.2 0.00011 19.8 1.4 17 128-144 14-30 (36)
337 KOG1480|consensus 63.8 3.1 6.7E-05 35.3 0.7 27 127-154 192-218 (909)
338 PF12946 EGF_MSP1_1: MSP1 EGF 61.6 17 0.00037 18.1 2.9 17 127-143 15-31 (37)
339 PF00053 Laminin_EGF: Laminin 61.0 3.6 7.8E-05 21.6 0.5 18 131-148 16-33 (49)
340 PF02124 Marek_A: Marek's dise 58.3 66 0.0014 23.1 9.4 79 30-111 94-183 (211)
341 PHA03376 BARF1; Provisional 54.8 12 0.00027 26.3 2.3 25 25-49 139-163 (221)
342 PF02480 Herpes_gE: Alphaherpe 52.9 41 0.00088 27.1 5.2 32 63-94 266-297 (439)
343 PF01688 Herpes_gI: Alphaherpe 51.3 50 0.0011 22.6 4.8 26 64-89 122-147 (161)
344 KOG0613|consensus 51.0 15 0.00032 33.1 2.7 25 34-58 213-237 (1205)
345 COG5475 Uncharacterized small 49.4 44 0.00095 18.3 3.8 22 67-90 19-41 (60)
346 PHA03282 envelope glycoprotein 48.9 45 0.00097 27.0 4.7 32 63-94 330-361 (540)
347 smart00180 EGF_Lam Laminin-typ 46.0 17 0.00038 18.8 1.6 14 134-147 19-32 (46)
348 PHA03290 envelope glycoprotein 44.3 71 0.0015 24.6 5.0 41 64-105 127-167 (357)
349 KOG3611|consensus 44.1 50 0.0011 28.5 4.7 58 27-88 571-634 (737)
350 PHA03112 IL-18 binding protein 42.0 1E+02 0.0023 20.5 5.8 27 22-48 35-63 (141)
351 KOG3514|consensus 41.8 15 0.00033 32.7 1.4 34 114-149 627-661 (1591)
352 PHA03286 envelope glycoprotein 41.5 68 0.0015 25.9 4.7 28 67-94 308-335 (492)
353 PF02480 Herpes_gE: Alphaherpe 39.5 9.8 0.00021 30.5 0.0 41 63-103 86-126 (439)
354 PHA03292 envelope glycoprotein 39.4 1.1E+02 0.0025 24.0 5.5 38 64-103 126-164 (413)
355 PHA03286 envelope glycoprotein 38.5 1E+02 0.0023 24.8 5.3 38 64-102 125-163 (492)
356 cd00055 EGF_Lam Laminin-type e 35.0 35 0.00075 17.9 1.7 15 133-147 19-33 (50)
357 PF11141 DUF2914: Protein of u 32.0 1E+02 0.0022 17.4 7.2 51 41-94 8-60 (66)
358 KOG3743|consensus 31.6 47 0.001 27.3 2.6 27 20-46 378-404 (622)
359 PF04863 EGF_alliinase: Alliin 31.3 37 0.00081 18.6 1.4 21 130-150 33-53 (56)
360 PHA03289 envelope glycoprotein 30.1 1.5E+02 0.0033 22.8 4.8 38 65-103 121-158 (352)
361 PHA03283 envelope glycoprotein 29.9 1.5E+02 0.0032 24.5 5.0 31 63-93 312-342 (542)
362 PHA03291 envelope glycoprotein 28.2 1.8E+02 0.0039 22.8 5.0 38 64-102 127-164 (401)
363 cd01475 vWA_Matrilin VWA_Matri 27.0 46 0.00099 23.7 1.7 18 127-144 202-219 (224)
364 KOG3516|consensus 25.0 57 0.0012 29.6 2.2 36 111-149 547-583 (1306)
365 PHA03281 envelope glycoprotein 24.5 1.9E+02 0.0041 24.2 4.7 32 63-94 472-503 (642)
366 smart00051 DSL delta serrate l 24.4 48 0.001 18.6 1.2 12 135-146 52-63 (63)
367 PF01414 DSL: Delta serrate li 23.3 59 0.0013 18.3 1.4 15 130-146 49-63 (63)
368 PHA03269 envelope glycoprotein 23.0 3.6E+02 0.0078 22.3 5.9 42 65-106 288-331 (566)
369 KOG3512|consensus 23.0 95 0.002 25.3 2.8 24 127-150 289-312 (592)
370 PF11781 RRN7: RNA polymerase 21.1 49 0.0011 16.3 0.7 10 126-135 19-28 (36)
No 1
>KOG3513|consensus
Probab=99.87 E-value=9.9e-22 Score=160.78 Aligned_cols=143 Identities=22% Similarity=0.411 Sum_probs=119.1
Q ss_pred CCccccCCCeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcc---eEEEEecceEEEEEcccCCCCCE
Q psy8425 3 KGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKR---LKIQFKKKRSTLIITRIRSEDAG 79 (176)
Q Consensus 3 ~~l~v~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~---~~~~~~~~~~~L~i~~v~~~d~G 79 (176)
..|.++.+|.++..+++..+..|++++|.|.+.|.|.|.++|++||.++....+ ..+ ..++|+|.++...|+|
T Consensus 324 ~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i----~~g~L~is~v~~~dsg 399 (1051)
T KOG3513|consen 324 GHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKI----DDGTLIISNVQESDSG 399 (1051)
T ss_pred EEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEE----eCCEEEEEecccccCe
Confidence 356788999999999999999999999999999999999999999999986555 443 4579999999999999
Q ss_pred EEEEEEEcC-CCceEEEEEEEEEecC-CC-----------------------CCCCCCC--------------CCeEEec
Q psy8425 80 RYECRGTGV-HKDVVSAFAEVSINLR-PD-----------------------NMGGPCP--------------LDSYCLN 120 (176)
Q Consensus 80 ~Y~C~a~n~-g~~~~s~~~~l~V~~~-p~-----------------------~~g~p~p--------------~~~~~~~ 120 (176)
+|+|.|.|. |....+ +.|.|+.. |. ..+.|.| .....++
T Consensus 400 ~YQC~A~Nk~G~i~an--A~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~e 477 (1051)
T KOG3513|consen 400 VYQCIAENKYGTIYAN--AELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILE 477 (1051)
T ss_pred EEEeeeecccceEeee--eEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECC
Confidence 999999999 877777 99999874 54 4455555 1234458
Q ss_pred CCEEEE----eccCCeeEEEecCCcccCcCcccccc
Q psy8425 121 GGSCTY----YDTVGELVCQCAEGYKGQRCESKDVY 152 (176)
Q Consensus 121 ~~~~~i----~~d~g~y~C~~~~n~~g~~c~~~~~~ 152 (176)
+|+|.| .+|.|.|+|. |+|..|..-....++
T Consensus 478 dGtL~I~n~t~~DaG~YtC~-A~N~~G~a~~~~~L~ 512 (1051)
T KOG3513|consen 478 DGTLEISNVTRSDAGKYTCV-AENKLGKAESTGNLI 512 (1051)
T ss_pred CCcEEecccCcccCcEEEEE-EEcccCccceEEEEE
Confidence 889998 7999999999 999999876554433
No 2
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.87 E-value=6.9e-21 Score=119.19 Aligned_cols=94 Identities=21% Similarity=0.354 Sum_probs=85.1
Q ss_pred CeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-C
Q psy8425 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-H 89 (176)
Q Consensus 11 p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g 89 (176)
|.|+..++++.+..|+.+.|.|.+.|.|.|.+.|+|+|.++..+.++.+......+.|.|.++..+|+|.|+|.|.|. |
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 678888999999999999999999999999999999999998767776665566789999999999999999999999 9
Q ss_pred CceEEEEEEEEEecCCC
Q psy8425 90 KDVVSAFAEVSINLRPD 106 (176)
Q Consensus 90 ~~~~s~~~~l~V~~~p~ 106 (176)
....+ +.|.|..+|.
T Consensus 81 ~~~~~--~~l~V~~~P~ 95 (98)
T cd05762 81 SRQAQ--VNLTVVDKPD 95 (98)
T ss_pred ceeEE--EEEEEecCCC
Confidence 88888 9999998775
No 3
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.82 E-value=1.8e-19 Score=110.70 Aligned_cols=87 Identities=25% Similarity=0.408 Sum_probs=74.6
Q ss_pred CCeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-
Q psy8425 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV- 88 (176)
Q Consensus 10 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~- 88 (176)
||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+....++ . ..+..|.|.+++.+|+|.|.|.|.|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~--~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEI--S--MSGAVLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEE--e--cCCCEEEECcCChhhCEEEEEEEEcCC
Confidence 688888899999999999999999999999999999999877654322 2 23458999999999999999999999
Q ss_pred CCceEEEEEEEEEe
Q psy8425 89 HKDVVSAFAEVSIN 102 (176)
Q Consensus 89 g~~~~s~~~~l~V~ 102 (176)
|...++ +.|.|+
T Consensus 77 G~~~~~--~~l~V~ 88 (88)
T cd05851 77 GKDKHQ--ARVYVQ 88 (88)
T ss_pred CceEEE--EEEEEC
Confidence 888777 777764
No 4
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.82 E-value=6.3e-19 Score=109.22 Aligned_cols=89 Identities=22% Similarity=0.437 Sum_probs=77.8
Q ss_pred CCCeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 9 IHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 9 ~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
.||.|+..+.++.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+......++|.|.++..+|+|.|.|.|.|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 47888888999999999999999999999999999999999987766766654455689999999999999999999999
Q ss_pred -CCceEEEEEEE
Q psy8425 89 -HKDVVSAFAEV 99 (176)
Q Consensus 89 -g~~~~s~~~~l 99 (176)
|....+ +.|
T Consensus 82 ~G~~~~~--~~l 91 (92)
T cd05747 82 EGKQEAQ--FTL 91 (92)
T ss_pred CCCEeEE--EEe
Confidence 877666 554
No 5
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.81 E-value=2e-18 Score=106.39 Aligned_cols=89 Identities=30% Similarity=0.609 Sum_probs=81.0
Q ss_pred CeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-C
Q psy8425 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-H 89 (176)
Q Consensus 11 p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g 89 (176)
|.|...+.++.+.+|+++.|.|.+.+.|.|.+.|++++..+..+.++.+.......+|.|.++..+|+|.|.|.+.|. |
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 678888999999999999999999999999999999999999988888887778899999999999999999999999 7
Q ss_pred CceEEEEEEEEE
Q psy8425 90 KDVVSAFAEVSI 101 (176)
Q Consensus 90 ~~~~s~~~~l~V 101 (176)
....+ +.|.|
T Consensus 81 ~~~~~--~~l~V 90 (90)
T PF07679_consen 81 EATAS--VNLTV 90 (90)
T ss_dssp EEEEE--EEEEE
T ss_pred EEEEE--EEEEC
Confidence 76666 66654
No 6
>KOG3513|consensus
Probab=99.81 E-value=1.2e-18 Score=142.90 Aligned_cols=139 Identities=24% Similarity=0.368 Sum_probs=110.4
Q ss_pred cCCCeEEeC-CceeEEecCCcEEEEEEEeecCCCeeEEEeCCEE-eccCcceEEEEecceEEEEEcccCCCCCEEEEEEE
Q psy8425 8 TIHPIEVSG-LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVE-ITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRG 85 (176)
Q Consensus 8 ~~~p~~~~~-~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~-l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 85 (176)
..+|.|... +++.....|+.+.|.|.+.|+|.|.+.|.|.+.. +.. +.........|.|.+++.+|+|.|.|.|
T Consensus 238 ~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~----r~~~~~~~~vL~I~nv~~~D~G~Y~C~A 313 (1051)
T KOG3513|consen 238 EYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPR----RATYSNYGKVLKIPNVQYEDAGEYECIA 313 (1051)
T ss_pred ccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCc----ceeeeccccEEEecccCcCCCeEEEEEE
Confidence 345665543 5577888999999999999999999999997764 332 2233356789999999999999999999
Q ss_pred EcC-CCceEEEEEEEEEecCCC---------------------CCCCCCCCC----------------eEEecCCEEEE-
Q psy8425 86 TGV-HKDVVSAFAEVSINLRPD---------------------NMGGPCPLD----------------SYCLNGGSCTY- 126 (176)
Q Consensus 86 ~n~-g~~~~s~~~~l~V~~~p~---------------------~~g~p~p~~----------------~~~~~~~~~~i- 126 (176)
.|. |...+. ..|.|..+|. +.|.|.|.. +..+.+|.|.|
T Consensus 314 eN~~G~~~~~--~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is 391 (1051)
T KOG3513|consen 314 ENSRGSATHS--GHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIIS 391 (1051)
T ss_pred ecccccceee--EEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEE
Confidence 999 988888 9999999887 567777732 25566677877
Q ss_pred ---eccCCeeEEEecCCcccCcCccccccc
Q psy8425 127 ---YDTVGELVCQCAEGYKGQRCESKDVYN 153 (176)
Q Consensus 127 ---~~d~g~y~C~~~~n~~g~~c~~~~~~~ 153 (176)
..|+|+|+|. |+|..|..-..+.+..
T Consensus 392 ~v~~~dsg~YQC~-A~Nk~G~i~anA~L~V 420 (1051)
T KOG3513|consen 392 NVQESDSGVYQCI-AENKYGTIYANAELKV 420 (1051)
T ss_pred ecccccCeEEEee-eecccceEeeeeEEEE
Confidence 7999999999 9999998776554333
No 7
>KOG4194|consensus
Probab=99.80 E-value=2e-19 Score=139.52 Aligned_cols=144 Identities=20% Similarity=0.388 Sum_probs=114.1
Q ss_pred CCccccCCCeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEE-eccCcceEEEEecceEEEEEcccCCCCCEEE
Q psy8425 3 KGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVE-ITTNKRLKIQFKKKRSTLIITRIRSEDAGRY 81 (176)
Q Consensus 3 ~~l~v~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~-l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 81 (176)
.+|+|...|.|...|.++++..|+.+.|.|.++|.|.|.|.|-|+|.. ++....-++..-.....+.|.+++.+|+|.|
T Consensus 605 ~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiY 684 (873)
T KOG4194|consen 605 AKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIY 684 (873)
T ss_pred eEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEeccccccccee
Confidence 357888999999999999999999999999999999999999997765 5554333455445667899999999999999
Q ss_pred EEEEEcC-CCceEEEEEEEEEecCCC---------------------CCCCCC-CCCeEEe--------------cCCEE
Q psy8425 82 ECRGTGV-HKDVVSAFAEVSINLRPD---------------------NMGGPC-PLDSYCL--------------NGGSC 124 (176)
Q Consensus 82 ~C~a~n~-g~~~~s~~~~l~V~~~p~---------------------~~g~p~-p~~~~~~--------------~~~~~ 124 (176)
+|.|.|. |..... +.|.|.+.|. +.|.|. |...|.. .+..+
T Consensus 685 tC~A~n~AG~isan--AtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQl 762 (873)
T KOG4194|consen 685 TCTAQNVAGQISAN--ATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQL 762 (873)
T ss_pred EEeeeccccceeec--eEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeE
Confidence 9999999 888888 9999999876 566665 4222222 23333
Q ss_pred EE-----eccCCeeEEEecCCcccCcCccc
Q psy8425 125 TY-----YDTVGELVCQCAEGYKGQRCESK 149 (176)
Q Consensus 125 ~i-----~~d~g~y~C~~~~n~~g~~c~~~ 149 (176)
.+ .+|+|.|+|+ -.|..|.-|-..
T Consensus 763 lvv~~~~~~daG~yTce-m~~~~~~~~~~i 791 (873)
T KOG4194|consen 763 LVVKENLVEDAGIYTCE-MSNTLGTERIHI 791 (873)
T ss_pred EEEEehhhhhcceEEEE-EEeeccceeeEE
Confidence 33 6899999999 888888666443
No 8
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.79 E-value=4.9e-18 Score=105.19 Aligned_cols=84 Identities=26% Similarity=0.465 Sum_probs=70.8
Q ss_pred CCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEe-cceEEEEEcccCCCCCEEEEEEEEcC-CCceE
Q psy8425 16 GLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFK-KKRSTLIITRIRSEDAGRYECRGTGV-HKDVV 93 (176)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~ 93 (176)
.|..+.+.+|+++.|.|.+.|.|.|.+.|+|++.++....++.+... ....+|.|.++..+|+|.|+|.|.|. |....
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 35567899999999999999999999999999999987777666543 33568999999999999999999999 87776
Q ss_pred EEEEEEEE
Q psy8425 94 SAFAEVSI 101 (176)
Q Consensus 94 s~~~~l~V 101 (176)
. +.|.|
T Consensus 87 ~--~~v~v 92 (92)
T cd05737 87 D--VTVSV 92 (92)
T ss_pred E--EEEeC
Confidence 6 65543
No 9
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.78 E-value=1.1e-17 Score=102.13 Aligned_cols=81 Identities=27% Similarity=0.414 Sum_probs=68.3
Q ss_pred eeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccC-cceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEE
Q psy8425 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTN-KRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAF 96 (176)
Q Consensus 19 ~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~ 96 (176)
.+.+.+|+.+.|.|.+.|.|.|.+.|+|++.++... .++.+......+.|.|.++..+|+|.|.|.|.|. |....+
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~-- 81 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHAS-- 81 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEE--
Confidence 567899999999999999999999999999999753 3555554455678999999999999999999999 877666
Q ss_pred EEEEE
Q psy8425 97 AEVSI 101 (176)
Q Consensus 97 ~~l~V 101 (176)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05894 82 LFVKV 86 (86)
T ss_pred EEEEC
Confidence 66654
No 10
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.77 E-value=1.4e-17 Score=102.74 Aligned_cols=87 Identities=21% Similarity=0.366 Sum_probs=70.5
Q ss_pred EEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCc
Q psy8425 13 EVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKD 91 (176)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~ 91 (176)
++.++++..+.+|+.+.|.|.+.|.|.|.+.|+++|..+................|.|.++..+|.|.|.|.|.|. |..
T Consensus 3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~ 82 (90)
T cd04972 3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA 82 (90)
T ss_pred cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce
Confidence 3456677779999999999999999999999999999876543322222245678999999999999999999999 887
Q ss_pred eEEEEEEEEE
Q psy8425 92 VVSAFAEVSI 101 (176)
Q Consensus 92 ~~s~~~~l~V 101 (176)
..+ +.|.|
T Consensus 83 ~~~--~~L~v 90 (90)
T cd04972 83 NVS--VQVTV 90 (90)
T ss_pred eEE--EEEeC
Confidence 777 76654
No 11
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.77 E-value=1.5e-17 Score=104.36 Aligned_cols=84 Identities=23% Similarity=0.380 Sum_probs=69.0
Q ss_pred CceeEEecCCcEEEEEEEee-cCCCeeEEEeCCEEeccCcceEEEEec-----ceEEEEEcccCCCCCEEEEEEEEcC-C
Q psy8425 17 LRNVSVKLRQSLRLVCRCKG-NPLPAVSWFKDNVEITTNKRLKIQFKK-----KRSTLIITRIRSEDAGRYECRGTGV-H 89 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~~~g-~p~p~i~W~~~g~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~-g 89 (176)
...+.+.+|+++.|.|.+.| .|.|.+.|+|||.++.......+.... ...+|.|.+++.+|+|.|+|.|.|. |
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 35678999999999999999 899999999999999864443322211 2478999999999999999999999 8
Q ss_pred CceEEEEEEEEEe
Q psy8425 90 KDVVSAFAEVSIN 102 (176)
Q Consensus 90 ~~~~s~~~~l~V~ 102 (176)
..... +.|.|.
T Consensus 90 ~~~~t--~~L~V~ 100 (101)
T cd04975 90 SKSLT--FELYVN 100 (101)
T ss_pred cEEEE--EEEEEE
Confidence 87777 777775
No 12
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.77 E-value=4.7e-18 Score=101.03 Aligned_cols=73 Identities=25% Similarity=0.610 Sum_probs=62.2
Q ss_pred cCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy8425 24 LRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 24 ~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V 101 (176)
+|+++.|.|.+.|.|.|.+.|+|++..+....+..+ ...++|.|.+++.+|+|.|+|.|.|. |....+ +.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~--~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLV---LSSGTLRISRVALHDQGQYECQAVNIVGSQRTV--AQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEE---ccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEE--EEEeC
Confidence 689999999999999999999999998876544433 34568999999999999999999999 887777 76654
No 13
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.76 E-value=1.5e-17 Score=102.23 Aligned_cols=87 Identities=25% Similarity=0.447 Sum_probs=72.4
Q ss_pred CCeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-
Q psy8425 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV- 88 (176)
Q Consensus 10 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~- 88 (176)
||.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+....... .....|.|.+++.+|+|.|.|.|.|.
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 76 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIK 76 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECC
Confidence 4667777888899999999999999999999999999887665533222 24568999999999999999999999
Q ss_pred CCceEEEEEEEEEe
Q psy8425 89 HKDVVSAFAEVSIN 102 (176)
Q Consensus 89 g~~~~s~~~~l~V~ 102 (176)
|....+ +.|.|+
T Consensus 77 G~~~~~--~~l~V~ 88 (88)
T cd04968 77 GKDTHQ--GRIYVQ 88 (88)
T ss_pred CcEEEE--EEEEEC
Confidence 887777 777763
No 14
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.76 E-value=2.1e-17 Score=103.55 Aligned_cols=90 Identities=23% Similarity=0.540 Sum_probs=70.4
Q ss_pred CCCeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEe--CCEEecc-----CcceEEEEecceEEEEEcccCCCCCEEE
Q psy8425 9 IHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFK--DNVEITT-----NKRLKIQFKKKRSTLIITRIRSEDAGRY 81 (176)
Q Consensus 9 ~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~--~g~~l~~-----~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 81 (176)
++|++.. +.+..+.+|++++|.|.+.|.|.|.+.|++ ++..+.. +.++.+.......+|.|.+++.+|+|.|
T Consensus 1 ~~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y 79 (98)
T cd05870 1 VQPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRY 79 (98)
T ss_pred CCCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEE
Confidence 4678765 667889999999999999999999999999 4544432 1234433223456899999999999999
Q ss_pred EEEEEcC-CCceEEEEEEEEE
Q psy8425 82 ECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 82 ~C~a~n~-g~~~~s~~~~l~V 101 (176)
.|.|.|. |....+ +.|.|
T Consensus 80 ~C~A~N~~G~~~~~--~~l~~ 98 (98)
T cd05870 80 DCEAASRIGGHQKS--MYLDI 98 (98)
T ss_pred EEEEeccCCcceeE--EEEeC
Confidence 9999999 887777 77654
No 15
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.76 E-value=2.5e-17 Score=103.00 Aligned_cols=91 Identities=21% Similarity=0.487 Sum_probs=71.0
Q ss_pred CCCeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCc-----ceEEEEecceEEEEEcccCCCCCEEEEE
Q psy8425 9 IHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNK-----RLKIQFKKKRSTLIITRIRSEDAGRYEC 83 (176)
Q Consensus 9 ~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~-----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 83 (176)
++|.|...+....+..|+.++|.|.+.|.|.|.+.|++++..+.... ++.+......+.|.|.+++.+|+|.|+|
T Consensus 1 ~~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C 80 (97)
T cd05869 1 AKPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLC 80 (97)
T ss_pred CCceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEE
Confidence 36777777666666678999999999999999999999987765321 2222222334689999999999999999
Q ss_pred EEEcC-CCceEEEEEEEEE
Q psy8425 84 RGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 84 ~a~n~-g~~~~s~~~~l~V 101 (176)
.|.|. |....+ +.|.|
T Consensus 81 ~A~N~~G~~~~~--~~l~v 97 (97)
T cd05869 81 TASNTIGQDSQS--MYLEV 97 (97)
T ss_pred EEecCCCCeeEE--EEEEC
Confidence 99999 887777 77654
No 16
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.76 E-value=9.9e-18 Score=102.29 Aligned_cols=83 Identities=27% Similarity=0.552 Sum_probs=70.2
Q ss_pred EEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCc
Q psy8425 13 EVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKD 91 (176)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~ 91 (176)
|+..|.+..+..|+.+.|.|.+.|.|.|.+.|+|++..+....++.+ .+..|.|.++..+|+|.|.|.|.|. |..
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV----EAGDLRITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE----eCCEEEEeeCCHHHCEEEEEEEECCCCeE
Confidence 45677888999999999999999999999999999999876554433 3458999999999999999999999 877
Q ss_pred eEEEEEEEEE
Q psy8425 92 VVSAFAEVSI 101 (176)
Q Consensus 92 ~~s~~~~l~V 101 (176)
..+ +.|.|
T Consensus 78 ~~~--~~l~V 85 (85)
T cd05728 78 YAS--AELAV 85 (85)
T ss_pred EEE--EEEEC
Confidence 666 66654
No 17
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.76 E-value=1.1e-17 Score=99.08 Aligned_cols=72 Identities=26% Similarity=0.428 Sum_probs=61.8
Q ss_pred CCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V 101 (176)
|+++.|.|.+.|.|.|.+.|+|++..+..+.++.+ ..+++|.|.+++.+|+|.|.|.|.|. |....+ +.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~---~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~--~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISI---WDDGSLEILNITKLDEGSYTCFAENNRGKANST--GVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEE---cCCCEEEECcCChhHCEEEEEEEECCCCceeEE--EEEEC
Confidence 68899999999999999999999998876666554 34568999999999999999999999 888777 76654
No 18
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.75 E-value=3.4e-17 Score=101.99 Aligned_cols=91 Identities=23% Similarity=0.406 Sum_probs=71.9
Q ss_pred CCeEEeCC--ceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEc
Q psy8425 10 HPIEVSGL--RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTG 87 (176)
Q Consensus 10 ~p~~~~~~--~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 87 (176)
||.|.... .+..+..|+++.|.|.+.|.|.|.+.|+++|..+.... .+.........|.|.++..+|+|.|+|.|.|
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 79 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGE-EKYSFNEDGSEMTILDVDKLDEAEYTCIAEN 79 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCC-CEEEEeCCCCEEEECCCChhhCEEEEEEEEc
Confidence 34444333 35578999999999999999999999999999887641 1223334556799999999999999999999
Q ss_pred C-CCceEEEEEEEEEec
Q psy8425 88 V-HKDVVSAFAEVSINL 103 (176)
Q Consensus 88 ~-g~~~~s~~~~l~V~~ 103 (176)
. |....+ +.|.|..
T Consensus 80 ~~G~~~~~--~~L~V~~ 94 (95)
T cd05730 80 KAGEQEAE--IHLKVFA 94 (95)
T ss_pred CCCeEEEE--EEEEEEe
Confidence 9 887777 8888764
No 19
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.74 E-value=3e-17 Score=97.52 Aligned_cols=72 Identities=24% Similarity=0.473 Sum_probs=58.7
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccC-cceEEEEec-ceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTN-KRLKIQFKK-KRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~-~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V 101 (176)
+.|.|.+.|.|.|.+.|+|++..+..+ .++.+.... ...+|.|.+++.+|+|.|+|.|.|. |....+ +.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~--a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCH--ARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEE--EEEeC
Confidence 479999999999999999999998743 455444322 2248999999999999999999999 887777 77764
No 20
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.74 E-value=7.1e-17 Score=100.73 Aligned_cols=89 Identities=22% Similarity=0.496 Sum_probs=69.9
Q ss_pred CCeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccC-----cceEEEEecceEEEEEcccCCCCCEEEEEE
Q psy8425 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTN-----KRLKIQFKKKRSTLIITRIRSEDAGRYECR 84 (176)
Q Consensus 10 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 84 (176)
+|.|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+... .++.+......+.|.|.+++.+|+|.|.|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 57775 455678999999999999999999999999998666532 222222223457899999999999999999
Q ss_pred EEcC-CCceEEEEEEEEE
Q psy8425 85 GTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 85 a~n~-g~~~~s~~~~l~V 101 (176)
|.|. |....+ +.|.|
T Consensus 81 a~N~~G~~~~s--~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQS--MYLEV 96 (96)
T ss_pred EEeCCCCcEEE--EEEeC
Confidence 9999 887766 66654
No 21
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.73 E-value=9e-17 Score=95.48 Aligned_cols=73 Identities=25% Similarity=0.468 Sum_probs=62.3
Q ss_pred cEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy8425 27 SLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 27 ~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V 101 (176)
.+.|.|.+.|.|.|.+.|+|+|..+....++.+........|.|.++..+|+|.|+|.|.|. |....+ +.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~--~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSAT--INVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEE--EEEEC
Confidence 36899999999999999999999997666666655556789999999999999999999999 887766 66654
No 22
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.73 E-value=1.3e-16 Score=98.72 Aligned_cols=84 Identities=29% Similarity=0.508 Sum_probs=69.5
Q ss_pred eCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEec-ceEEEEEcccCCCCCEEEEEEEEcC-CCce
Q psy8425 15 SGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKK-KRSTLIITRIRSEDAGRYECRGTGV-HKDV 92 (176)
Q Consensus 15 ~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~ 92 (176)
..|..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+.... ...+|.|.+++.+|+|.|.|.|.|. |...
T Consensus 6 ~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05891 6 GLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET 85 (92)
T ss_pred cCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence 3466788999999999999999999999999999988776666554432 2358999999999999999999999 8777
Q ss_pred EEEEEEEE
Q psy8425 93 VSAFAEVS 100 (176)
Q Consensus 93 ~s~~~~l~ 100 (176)
.+ +.|.
T Consensus 86 ~~--~~v~ 91 (92)
T cd05891 86 VD--VTVS 91 (92)
T ss_pred eE--EEEE
Confidence 66 5554
No 23
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.73 E-value=1.7e-16 Score=97.42 Aligned_cols=80 Identities=25% Similarity=0.382 Sum_probs=66.8
Q ss_pred CCcEEEEEEEeecCCCeeEEEeCCEEeccC-cceEEEEe----cceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEE
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFKDNVEITTN-KRLKIQFK----KKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAE 98 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~-~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~ 98 (176)
|+.+.|.|.+.|.|.+.+.|+|++..+... .++.+... ...++|.|.++..+|+|.|+|.|.|. |..... +.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~--~~ 78 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGI--IQ 78 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEE--EE
Confidence 789999999999999999999999888653 34444321 22368999999999999999999999 988888 99
Q ss_pred EEEecCCC
Q psy8425 99 VSINLRPD 106 (176)
Q Consensus 99 l~V~~~p~ 106 (176)
|.|..+|.
T Consensus 79 L~V~~~P~ 86 (88)
T cd05735 79 LTVQEPPD 86 (88)
T ss_pred EEEeCCCC
Confidence 99998775
No 24
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.73 E-value=4.9e-17 Score=97.10 Aligned_cols=75 Identities=23% Similarity=0.468 Sum_probs=60.8
Q ss_pred CCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEEe
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSIN 102 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V~ 102 (176)
|+.+.|.|.+.|.|.|.+.|+|+|.++.......... .....|.|.+++..|+|.|+|.|.|. |....+ +.|.|+
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~-~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~--~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRK-VDGDTIIFSKVQERSSAVYQCNASNEYGYLLAN--AFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEE-ecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEE--EEEEeC
Confidence 6889999999999999999999999986432211111 23457999999999999999999999 888877 888773
No 25
>KOG4221|consensus
Probab=99.73 E-value=5.2e-17 Score=133.80 Aligned_cols=139 Identities=25% Similarity=0.426 Sum_probs=110.0
Q ss_pred CCeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-
Q psy8425 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV- 88 (176)
Q Consensus 10 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~- 88 (176)
.-.|...+....+.+|+.+.|.|.+.|.|.|.+.|+|||..+..+. +++.. ...+.|.|.+++..|+|.|+|+|.|.
T Consensus 237 ~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl-~g~~slliS~a~~~dSg~YtC~Atn~~ 314 (1381)
T KOG4221|consen 237 KLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVL-VGGSSLLISNATDDDSGKYTCRATNTN 314 (1381)
T ss_pred ceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEE-ecccceEEeccccccCceEEEEecCCC
Confidence 3447778888999999999999999999999999999999998754 45544 55678999999999999999999997
Q ss_pred CCceEEEEEEEEEecCCC---------------------CCCCCCCCCe-------------EEec-CCEEEE----ecc
Q psy8425 89 HKDVVSAFAEVSINLRPD---------------------NMGGPCPLDS-------------YCLN-GGSCTY----YDT 129 (176)
Q Consensus 89 g~~~~s~~~~l~V~~~p~---------------------~~g~p~p~~~-------------~~~~-~~~~~i----~~d 129 (176)
....++ +.|.|+.+|. ..|.|.|... +.+. ++.+.| ..|
T Consensus 315 D~idas--aev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sd 392 (1381)
T KOG4221|consen 315 DSIDAS--AEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSD 392 (1381)
T ss_pred cccccc--eEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEeccc
Confidence 555566 8899998886 4556655222 2222 232444 789
Q ss_pred CCeeEEEecCCcccCcCccccccc
Q psy8425 130 VGELVCQCAEGYKGQRCESKDVYN 153 (176)
Q Consensus 130 ~g~y~C~~~~n~~g~~c~~~~~~~ 153 (176)
.|-|+|. ++|..|..+..+.++.
T Consensus 393 eg~yQcv-aen~~G~a~a~a~l~v 415 (1381)
T KOG4221|consen 393 EGFYQCV-AENDAGSAQAAAQLEV 415 (1381)
T ss_pred chhhhhh-hccCcccccchhhhee
Confidence 9999999 9999999988776533
No 26
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.73 E-value=2.5e-16 Score=100.37 Aligned_cols=98 Identities=22% Similarity=0.354 Sum_probs=74.6
Q ss_pred ccCCCeEEeCCceeEE----ecCCcEEEEEEEeecCCCeeEEEeCCEEecc-CcceEEEEe----cceEEEEEcccC-CC
Q psy8425 7 ATIHPIEVSGLRNVSV----KLRQSLRLVCRCKGNPLPAVSWFKDNVEITT-NKRLKIQFK----KKRSTLIITRIR-SE 76 (176)
Q Consensus 7 v~~~p~~~~~~~~~~v----~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~-~~~~~~~~~----~~~~~L~i~~v~-~~ 76 (176)
|..+|.|..++....+ ..|..+.|.|.+.|.|.|.+.|+|+|..+.. +.++.+... ...+.|.|.++. .+
T Consensus 1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~ 80 (109)
T cd05773 1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAAL 80 (109)
T ss_pred CccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccC
Confidence 4557877766552222 2467899999999999999999999998864 234433221 124689999997 59
Q ss_pred CCEEEEEEEEcC-CCceEEEEEEEEEecCCC
Q psy8425 77 DAGRYECRGTGV-HKDVVSAFAEVSINLRPD 106 (176)
Q Consensus 77 d~G~Y~C~a~n~-g~~~~s~~~~l~V~~~p~ 106 (176)
|.|.|+|.|.|. |....+ +.|.|..+|.
T Consensus 81 D~G~Y~C~A~N~~G~~~~~--i~L~~~~~p~ 109 (109)
T cd05773 81 DYALFTCTAHNSLGEDSLD--IQLVSTSRPD 109 (109)
T ss_pred CCEEEEEEEEeCCccCcEE--EEEEecCCCC
Confidence 999999999999 888877 9999988774
No 27
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.72 E-value=1.6e-16 Score=98.05 Aligned_cols=86 Identities=20% Similarity=0.409 Sum_probs=67.5
Q ss_pred CeEE--eCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 11 PIEV--SGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 11 p~~~--~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
|.+. ..+.++.+.+|++++|.|.+.|. .|.+.|+|++..+.. .+. .......+|.|.+++.+|+|.|.|.|.|.
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~-~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 77 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP-PRL--QLSNDNRTLTFNNVTRSDTGHYQCEASNE 77 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC-CCE--EEeCCCCEEEECcCChhhCEEEEEEEEcC
Confidence 5553 23457789999999999999999 999999999998765 333 33345568999999999999999999999
Q ss_pred -CCceEEEEEEEEE
Q psy8425 89 -HKDVVSAFAEVSI 101 (176)
Q Consensus 89 -g~~~~s~~~~l~V 101 (176)
|.. .+..+.|.|
T Consensus 78 ~G~~-~S~~~~L~V 90 (91)
T cd05740 78 VSNM-TSDPYILNV 90 (91)
T ss_pred CCCE-EeeeEEEEe
Confidence 543 343377766
No 28
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.72 E-value=1.7e-16 Score=96.72 Aligned_cols=78 Identities=23% Similarity=0.470 Sum_probs=63.2
Q ss_pred CcEEEEEEEeecCCC--eeEEEeCCEEeccC---cce-EEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEE
Q psy8425 26 QSLRLVCRCKGNPLP--AVSWFKDNVEITTN---KRL-KIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAE 98 (176)
Q Consensus 26 ~~~~l~C~~~g~p~p--~i~W~~~g~~l~~~---~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~ 98 (176)
+++.|.|.+.|.|.| .+.|+++|..+... .++ ++......++|.|.+++..|+|.|+|.|.|. |...++ +.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~--~~ 78 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS--AT 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEE--EE
Confidence 468999999999988 57999999988642 232 1222234579999999999999999999999 888888 99
Q ss_pred EEEecCC
Q psy8425 99 VSINLRP 105 (176)
Q Consensus 99 l~V~~~p 105 (176)
|.|..+|
T Consensus 79 L~V~~~P 85 (85)
T cd05854 79 LVVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9999876
No 29
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.72 E-value=1.1e-16 Score=95.63 Aligned_cols=73 Identities=22% Similarity=0.474 Sum_probs=60.0
Q ss_pred CCcEEEEEEEeecCCCeeEEEeCCEEeccCcce-EEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL-KIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V 101 (176)
|+++.|.|.+.|.|.|.++|+++|.++...... +.. ...+.|.|.+++.+|+|.|.|.|.|. |....+ +.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~--~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH--VSSGALILTDVQPSDTAVYQCEARNRHGNLLAN--AHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE--eeCCEEEECCCChhhCEEEEEEEECCCCeEEEE--EEEEE
Confidence 788999999999999999999999988653221 222 23468999999999999999999999 887766 77776
No 30
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.72 E-value=1.8e-16 Score=99.61 Aligned_cols=82 Identities=21% Similarity=0.299 Sum_probs=67.4
Q ss_pred eeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEe------cceEEEEEcccCCCCCEEEEEEEEcC-CCc
Q psy8425 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFK------KKRSTLIITRIRSEDAGRYECRGTGV-HKD 91 (176)
Q Consensus 19 ~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~ 91 (176)
...+..|+.+.|.|.+.|.|.|.+.|+|+|.++..+.+...... ...++|.|.+++.+|+|.|+|.|.|. |..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 56788899999999999999999999999999886543322211 12468999999999999999999999 887
Q ss_pred eEEEEEEEEEe
Q psy8425 92 VVSAFAEVSIN 102 (176)
Q Consensus 92 ~~s~~~~l~V~ 102 (176)
..+ +.|.|.
T Consensus 92 ~~t--~~l~V~ 100 (101)
T cd05859 92 SYT--FALQIQ 100 (101)
T ss_pred EEE--EEEEEE
Confidence 777 777775
No 31
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.72 E-value=1.4e-16 Score=95.67 Aligned_cols=70 Identities=20% Similarity=0.415 Sum_probs=60.0
Q ss_pred CCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEE
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVS 94 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s 94 (176)
|+++.|.|.+.|.|.|.+.|++++..+....++.+........|.|.+++.+|+|.|.|.|.|. |.....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 71 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI 71 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence 7889999999999999999999998887666665554455678999999999999999999999 766655
No 32
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.71 E-value=1.2e-16 Score=94.22 Aligned_cols=70 Identities=26% Similarity=0.479 Sum_probs=58.1
Q ss_pred cEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy8425 27 SLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 27 ~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V 101 (176)
++.|.|.+.|.|.|.+.|+|+|..+....++.+. ....|.|.+++.+|+|.|+|.|.|. |....+ +.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~---~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~--~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIV---KEHNLQVLGLVKSDEGFYQCIAENDVGNVQAS--AQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEE---ecCCEEEEcCCcccCEEEEEEEEcCCCEEEEE--EEEEC
Confidence 4789999999999999999999988766555442 2346888899999999999999999 887777 76654
No 33
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.71 E-value=1.1e-16 Score=92.71 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=54.9
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEEe
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSIN 102 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V~ 102 (176)
+.|.|.+.|.|.|.+.|+|||.++... ...+.|.|.++..+|+|.|+|.|.|. |...++ +.+.|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~--~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKR--ISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEE--EEEEEE
Confidence 478999999999999999999988642 24468999999999999999999999 877766 555553
No 34
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.71 E-value=5.5e-16 Score=95.63 Aligned_cols=85 Identities=26% Similarity=0.487 Sum_probs=67.3
Q ss_pred EeCCceeEEecCCcEEEEEEEeecCCCeeEEEe-CCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCc
Q psy8425 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFK-DNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKD 91 (176)
Q Consensus 14 ~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~ 91 (176)
...+.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+....++.+........|.|.++..+|+|.|+|.|.|. |..
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 34567788999999999999999998 899998 577776666666554344568999999999999999999999 664
Q ss_pred e-EEEEEEEEE
Q psy8425 92 V-VSAFAEVSI 101 (176)
Q Consensus 92 ~-~s~~~~l~V 101 (176)
. ++ +.|.+
T Consensus 83 ~~~~--i~l~~ 91 (92)
T cd05866 83 QEAT--VVLEI 91 (92)
T ss_pred EEEE--EEEEE
Confidence 3 33 55543
No 35
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.71 E-value=1.6e-16 Score=94.13 Aligned_cols=72 Identities=25% Similarity=0.472 Sum_probs=61.6
Q ss_pred CCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V 101 (176)
|+++.|.|.+.|.|.|.+.|+|++..+....++.+ ...++|.|.+++.+|+|.|+|.|.|. |....+ +.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~--~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICI---WPDGSLEILNVTKSDEGKYTCFAENFFGKANST--GSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEE---CCCCeEEEccCChhHCEEEEEEEECCCCceEEE--EEEEC
Confidence 78899999999999999999999998877665544 34467999999999999999999999 887777 66654
No 36
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.71 E-value=2.8e-16 Score=95.80 Aligned_cols=80 Identities=20% Similarity=0.470 Sum_probs=65.2
Q ss_pred eEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcce-EEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEE
Q psy8425 20 VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL-KIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFA 97 (176)
Q Consensus 20 ~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~ 97 (176)
+.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....+. ..........|.|.++..+|+|.|+|.|.|. |....+ +
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~--~ 81 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT--Y 81 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEE--E
Confidence 45788999999999999999999999999998765432 1222234568999999999999999999999 887776 7
Q ss_pred EEEE
Q psy8425 98 EVSI 101 (176)
Q Consensus 98 ~l~V 101 (176)
.|.|
T Consensus 82 ~l~v 85 (85)
T cd05857 82 HLDV 85 (85)
T ss_pred EEEC
Confidence 6654
No 37
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.70 E-value=4.7e-16 Score=96.75 Aligned_cols=85 Identities=22% Similarity=0.397 Sum_probs=64.4
Q ss_pred eCCceeEEecCCcEEEEEEEeecCC-CeeEEEe-CCEEecc-CcceEEEEe-cceEEEEEcccCCCCCEEEEEEEEcC--
Q psy8425 15 SGLRNVSVKLRQSLRLVCRCKGNPL-PAVSWFK-DNVEITT-NKRLKIQFK-KKRSTLIITRIRSEDAGRYECRGTGV-- 88 (176)
Q Consensus 15 ~~~~~~~v~~G~~~~l~C~~~g~p~-p~i~W~~-~g~~l~~-~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~-- 88 (176)
..|....+..|+++.|.|.+.|.|. |.+.|++ ++..+.. ..++.+... ...++|.|.+++.+|+|.|+|.|.|.
T Consensus 5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE 84 (96)
T ss_pred EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence 3456667899999999999999995 6999998 7876654 334433321 23478999999999999999999998
Q ss_pred CCceEEEEEEEEE
Q psy8425 89 HKDVVSAFAEVSI 101 (176)
Q Consensus 89 g~~~~s~~~~l~V 101 (176)
|....+ +.|.|
T Consensus 85 g~~~~s--~~l~v 95 (96)
T cd05865 85 GESEAT--VNVKI 95 (96)
T ss_pred CcEEEE--EEEEE
Confidence 444444 66654
No 38
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.70 E-value=1.9e-16 Score=94.12 Aligned_cols=72 Identities=29% Similarity=0.502 Sum_probs=57.9
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccC-cceEEEEec-ceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTN-KRLKIQFKK-KRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~-~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V 101 (176)
+.|.|.+.|.|.|.+.|+|++..+... .++.+.... ....|.|.+++.+|+|.|+|.|.|. |....+ +.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~--a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCT--ARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE--EEEeC
Confidence 479999999999999999999988753 344443222 2237999999999999999999999 888777 77764
No 39
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.70 E-value=2.6e-16 Score=93.89 Aligned_cols=74 Identities=24% Similarity=0.443 Sum_probs=61.3
Q ss_pred CCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V 101 (176)
|+++.|.|.+.|.|.|.+.|+++|..+...... .........|.|.+++.+|+|.|+|.|.|. |....+ +.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~--~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLAN--AFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEe--EEEEE
Confidence 788999999999999999999999988764332 122245578999999999999999999999 877776 77776
No 40
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.70 E-value=6.8e-16 Score=96.76 Aligned_cols=90 Identities=21% Similarity=0.392 Sum_probs=65.7
Q ss_pred CCeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccC----cceEEEEec-ceEEEEE--cccCCCCCEEEE
Q psy8425 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTN----KRLKIQFKK-KRSTLII--TRIRSEDAGRYE 82 (176)
Q Consensus 10 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~----~~~~~~~~~-~~~~L~i--~~v~~~d~G~Y~ 82 (176)
||.|...+.++.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+... ....+.... ....+.+ ..+..+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 688888899999999999999999999999999999999988651 111221111 1122222 234689999999
Q ss_pred EEEEcC-CC-ceEEEEEEEEE
Q psy8425 83 CRGTGV-HK-DVVSAFAEVSI 101 (176)
Q Consensus 83 C~a~n~-g~-~~~s~~~~l~V 101 (176)
|.|.|. |. .... +.|.|
T Consensus 81 C~a~N~~G~~~s~~--~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRN--ASLEV 99 (100)
T ss_pred EEEEccccceecce--EEEEe
Confidence 999999 66 3333 66665
No 41
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.70 E-value=6.5e-16 Score=95.95 Aligned_cols=81 Identities=26% Similarity=0.527 Sum_probs=63.9
Q ss_pred CCeEEeCCceeEEe---cCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccC-CCCCEEEEEEE
Q psy8425 10 HPIEVSGLRNVSVK---LRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIR-SEDAGRYECRG 85 (176)
Q Consensus 10 ~p~~~~~~~~~~v~---~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a 85 (176)
.|.|+..+.++.+. +|+.+.|.|.+.|.|.|.+.|+|+|..+......+... .++.|.|.++. .+|+|.|.|.|
T Consensus 1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~--~~g~L~i~~~~~~~D~G~Y~C~A 78 (94)
T cd05848 1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL--IDGNLIISNPSEVKDSGRYQCLA 78 (94)
T ss_pred CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe--eCCeEEEccCCccCcCEEEEEEE
Confidence 37788888877654 47899999999999999999999999986544333332 33578998875 69999999999
Q ss_pred EcC-CCce
Q psy8425 86 TGV-HKDV 92 (176)
Q Consensus 86 ~n~-g~~~ 92 (176)
.|. |...
T Consensus 79 ~N~~G~~~ 86 (94)
T cd05848 79 TNSIGSIL 86 (94)
T ss_pred EcCCCeEE
Confidence 999 6543
No 42
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.69 E-value=4.2e-16 Score=92.76 Aligned_cols=72 Identities=29% Similarity=0.462 Sum_probs=58.0
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccC-cceEEEEe-cceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTN-KRLKIQFK-KKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~-~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V 101 (176)
+.|.|.+.|.|.|.+.|+|++..+... .++.+... ....+|.|.+++.+|+|.|+|.|.|. |....+ +.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~--~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCN--ARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEE--EEEeC
Confidence 479999999999999999999998743 44444322 23347999999999999999999999 887777 77754
No 43
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.69 E-value=6.2e-16 Score=94.31 Aligned_cols=78 Identities=24% Similarity=0.459 Sum_probs=62.2
Q ss_pred CcEEEEEEEeecCCC--eeEEEeCCEEeccCc---ceE-EEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEE
Q psy8425 26 QSLRLVCRCKGNPLP--AVSWFKDNVEITTNK---RLK-IQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAE 98 (176)
Q Consensus 26 ~~~~l~C~~~g~p~p--~i~W~~~g~~l~~~~---~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~ 98 (176)
+++.|.|.+.|.|.| .+.|+++|..+.... .+. .......++|.|.+++..|+|.|+|.|.|. |....+ +.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~--~~ 78 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSAS--AD 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEE--EE
Confidence 468999999999988 568999999886432 111 111135678999999999999999999999 877777 99
Q ss_pred EEEecCC
Q psy8425 99 VSINLRP 105 (176)
Q Consensus 99 l~V~~~p 105 (176)
|.|..+|
T Consensus 79 l~V~~pP 85 (85)
T cd04970 79 LIVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9999876
No 44
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.67 E-value=2.5e-15 Score=93.36 Aligned_cols=81 Identities=20% Similarity=0.355 Sum_probs=63.1
Q ss_pred CCeEEeCCceeEEecC---CcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccC-CCCCEEEEEEE
Q psy8425 10 HPIEVSGLRNVSVKLR---QSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIR-SEDAGRYECRG 85 (176)
Q Consensus 10 ~p~~~~~~~~~~v~~G---~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a 85 (176)
.|.|...|.++.+.+| +++.|.|.+.|.|.|.++|+++|..+......+... ..+.|.|.++. ..|+|.|.|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~--~~g~L~I~~~~~~~D~G~Y~C~A 78 (94)
T cd05850 1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL--VAGNLVINNPQKARDAGSYQCLA 78 (94)
T ss_pred CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE--ECCeEEEccCCccCcCEEEEEEE
Confidence 3678888888877766 479999999999999999999999986433222222 24578898865 59999999999
Q ss_pred EcC-CCce
Q psy8425 86 TGV-HKDV 92 (176)
Q Consensus 86 ~n~-g~~~ 92 (176)
.|. |...
T Consensus 79 ~N~~G~~~ 86 (94)
T cd05850 79 INRCGTVV 86 (94)
T ss_pred EcCcCcEE
Confidence 999 6543
No 45
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.67 E-value=4.5e-16 Score=91.16 Aligned_cols=62 Identities=27% Similarity=0.475 Sum_probs=52.5
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEE
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVS 94 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s 94 (176)
+.|.|.+.|.|.|.+.|+|||.++....+ + .....|.|.++..+|+|.|+|.|.|. |....+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~--~---~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~ 63 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT--F---KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQR 63 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE--E---ccCCEEEECcCCHHHCEEEEEEEEECCCceeeE
Confidence 36899999999999999999999876432 2 23457999999999999999999999 877766
No 46
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.67 E-value=4.4e-16 Score=91.24 Aligned_cols=67 Identities=30% Similarity=0.631 Sum_probs=56.7
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEE
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEV 99 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l 99 (176)
+.|.|.+.|.|.|.+.|+|+|..+....++.+ ...+.|.|.++..+|+|.|+|.|.|. |....+ +.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~--~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHI---SPEGYLAIRDVGVADQGRYECVARNTIGYASVS--MVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEE---CCCCEEEECcCChhhCEEEEEEEECCCCcEEEE--EEe
Confidence 47999999999999999999998876555544 34568999999999999999999999 887766 554
No 47
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.67 E-value=7.1e-16 Score=92.75 Aligned_cols=77 Identities=25% Similarity=0.464 Sum_probs=62.7
Q ss_pred CceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEE
Q psy8425 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSA 95 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~ 95 (176)
|++..+.+|+.+.|.|.+.+. .+.+.|+|+|.++....++.+. ...|.|.+++.+|+|.|.|.|.|. |.....
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~- 74 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTY- 74 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe----CCEEEECCCChhhCEEEEEEEeCCCCcccEE-
Confidence 356778999999999999986 5689999999999776555442 347999999999999999999998 776655
Q ss_pred EEEEE
Q psy8425 96 FAEVS 100 (176)
Q Consensus 96 ~~~l~ 100 (176)
+.|.
T Consensus 75 -~~v~ 78 (79)
T cd04973 75 -FSVN 78 (79)
T ss_pred -EEEe
Confidence 5444
No 48
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.67 E-value=1.7e-15 Score=93.80 Aligned_cols=79 Identities=25% Similarity=0.461 Sum_probs=61.9
Q ss_pred CCeEEeCCceeEEecCC---cEEEEEEEeecCCCeeEEEeCCEEeccC-cceEEEEecceEEEEEcccC-CCCCEEEEEE
Q psy8425 10 HPIEVSGLRNVSVKLRQ---SLRLVCRCKGNPLPAVSWFKDNVEITTN-KRLKIQFKKKRSTLIITRIR-SEDAGRYECR 84 (176)
Q Consensus 10 ~p~~~~~~~~~~v~~G~---~~~l~C~~~g~p~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~ 84 (176)
+|.|...|.++.+.++. .+.|.|.+.|.|.|.++|+|++..+... .++.+ .++.|.|.++. .+|+|.|.|.
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~----~~g~L~I~~~~~~~D~G~Y~C~ 76 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM----VGGNLVINNPDKYKDAGRYVCI 76 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE----ECCEEEECcCCcCCCCEEEEEE
Confidence 47788777777665544 7999999999999999999999988542 33322 24689999885 6899999999
Q ss_pred EEcC-CCce
Q psy8425 85 GTGV-HKDV 92 (176)
Q Consensus 85 a~n~-g~~~ 92 (176)
|.|. |...
T Consensus 77 A~N~~G~~~ 85 (93)
T cd05849 77 VSNIYGKVR 85 (93)
T ss_pred EEeCcceEE
Confidence 9999 6543
No 49
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.67 E-value=1.7e-15 Score=94.34 Aligned_cols=88 Identities=24% Similarity=0.395 Sum_probs=66.6
Q ss_pred EEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEccc-----CCCCCEEEEEEEEc
Q psy8425 13 EVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI-----RSEDAGRYECRGTG 87 (176)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v-----~~~d~G~Y~C~a~n 87 (176)
|...|.+..+.+|+++.|.|.+.|.|.|.+.|+|+|..+....+.+... ..+++|.|.++ ...|+|.|.|.|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~-~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQ-LPNGSLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEE-ccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 4566778888999999999999999999999999999887543322222 23356777766 58899999999999
Q ss_pred C-CCceEEEEEEEEE
Q psy8425 88 V-HKDVVSAFAEVSI 101 (176)
Q Consensus 88 ~-g~~~~s~~~~l~V 101 (176)
. .+...+..+.|.|
T Consensus 81 ~~~G~~~s~~~~l~v 95 (95)
T cd05722 81 DSLGSIVSRTARLTV 95 (95)
T ss_pred CccCcEEEeeeEEeC
Confidence 9 6665554465543
No 50
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.67 E-value=9.9e-16 Score=91.66 Aligned_cols=74 Identities=24% Similarity=0.473 Sum_probs=57.2
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEEe
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSIN 102 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V~ 102 (176)
++|.|.+.|.|.|.+.|+|+|.++..... ..........|.|.++..+|+|.|.|.|.|. |....+..+.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~-~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQG-NYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCc-cEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 47999999999999999999998865432 2222244568999999999999999999999 76655533555553
No 51
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.67 E-value=1e-15 Score=92.73 Aligned_cols=78 Identities=19% Similarity=0.281 Sum_probs=61.9
Q ss_pred CcEEEEEEEeecC--CCeeEEEeCCEEeccC---cceEEEEe-cceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEE
Q psy8425 26 QSLRLVCRCKGNP--LPAVSWFKDNVEITTN---KRLKIQFK-KKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAE 98 (176)
Q Consensus 26 ~~~~l~C~~~g~p--~p~i~W~~~g~~l~~~---~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~ 98 (176)
+++.|.|.+.+.| .+.+.|++||+++... .++..... ...+.|.|.+++..|+|.|+|.|.|. +...++ +.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~--a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA--AD 78 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEE--EE
Confidence 4689999998744 6789999999999632 23222111 24568999999999999999999999 888888 99
Q ss_pred EEEecCC
Q psy8425 99 VSINLRP 105 (176)
Q Consensus 99 l~V~~~p 105 (176)
|.|+.||
T Consensus 79 L~V~~pP 85 (85)
T cd05853 79 LIVRGPP 85 (85)
T ss_pred EEEecCC
Confidence 9999887
No 52
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.66 E-value=9.9e-16 Score=90.19 Aligned_cols=69 Identities=29% Similarity=0.453 Sum_probs=57.0
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEEe
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSIN 102 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V~ 102 (176)
+.|.|.+.|.|.|.+.|+|+|.++....++. ....+|.|.++..+|+|.|+|.|.|. |....+ +.+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~--~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKR--LTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEE--EEEEEE
Confidence 4689999999999999999999987653322 34578999999999999999999999 777766 555553
No 53
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.66 E-value=9.9e-16 Score=90.22 Aligned_cols=69 Identities=25% Similarity=0.438 Sum_probs=56.5
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V 101 (176)
+.|.|.+.|.|.|.+.|+|++..+.... ... .....+|.|.++..+|+|.|.|.|.|. |....+ +.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~--~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKK--LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHH--YTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeE--EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEE--EEEEE
Confidence 4689999999999999999988775532 222 245679999999999999999999999 877766 77766
No 54
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.65 E-value=2.6e-15 Score=91.68 Aligned_cols=81 Identities=28% Similarity=0.525 Sum_probs=63.7
Q ss_pred CCceeEEecCCcEEEEEEE-eecCCCeeEEEeCCEEeccC-cceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCce
Q psy8425 16 GLRNVSVKLRQSLRLVCRC-KGNPLPAVSWFKDNVEITTN-KRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDV 92 (176)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~~-~g~p~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~ 92 (176)
.|.+..+.+|+++.|.|.+ .|.|.|.+.|+|++..+... .++.+ ...+.|.|.+++.+|+|.|.|.|.|. |...
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRI---VDDGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEE---ccCCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 3567788999999999998 78999999999999988763 33332 23468999999999999999999999 6543
Q ss_pred EEEEEEEE
Q psy8425 93 VSAFAEVS 100 (176)
Q Consensus 93 ~s~~~~l~ 100 (176)
.. .+.|.
T Consensus 79 s~-~~~l~ 85 (86)
T cd05724 79 SA-AARLS 85 (86)
T ss_pred ee-eEEEE
Confidence 32 15554
No 55
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.65 E-value=1.8e-15 Score=93.31 Aligned_cols=75 Identities=24% Similarity=0.499 Sum_probs=60.7
Q ss_pred CCcEEEEEEEeecCCCeeEEEeCCEEec--------cCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEE
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFKDNVEIT--------TNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSA 95 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~~g~~l~--------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~ 95 (176)
|+.+.|.|.+.|.|.|.+.|+|+|..+. ...++.+ ...+.|.|.+++.+|+|.|.|.|.|. |....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~- 76 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV---SQTGDLTITNVQRSDVGYYICQTLNVAGSILTK- 76 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE---CCCCeEEEeeCChhhCEEEEEEEEcCCCceEEE-
Confidence 7889999999999999999999886431 1223332 23467999999999999999999999 887777
Q ss_pred EEEEEEecC
Q psy8425 96 FAEVSINLR 104 (176)
Q Consensus 96 ~~~l~V~~~ 104 (176)
+.|.|...
T Consensus 77 -~~l~V~~~ 84 (90)
T cd05726 77 -AYLEVTDV 84 (90)
T ss_pred -EEEEEeec
Confidence 89998863
No 56
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.65 E-value=1.9e-15 Score=91.39 Aligned_cols=77 Identities=30% Similarity=0.570 Sum_probs=61.4
Q ss_pred eEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEE
Q psy8425 20 VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAE 98 (176)
Q Consensus 20 ~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~ 98 (176)
+.+..|+++.|.|.+.|.|.|.+.|++++..+....... .......|.|.+++.+|+|.|+|.+.|. |....+ +.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~--~~ 79 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINAT--YK 79 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEE--EE
Confidence 456789999999999999999999999998876533221 1134578999999999999999999999 766555 55
Q ss_pred EE
Q psy8425 99 VS 100 (176)
Q Consensus 99 l~ 100 (176)
|.
T Consensus 80 v~ 81 (82)
T cd05856 80 VD 81 (82)
T ss_pred Ee
Confidence 54
No 57
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.65 E-value=3.7e-15 Score=89.87 Aligned_cols=65 Identities=15% Similarity=0.400 Sum_probs=53.4
Q ss_pred EEEEEeecCCCeeEEEeCCEEeccCcceEEEEe-------cceEEEEEcccCCCCCEEEEEEEEcC-CCceEE
Q psy8425 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFK-------KKRSTLIITRIRSEDAGRYECRGTGV-HKDVVS 94 (176)
Q Consensus 30 l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s 94 (176)
+.|.+.|.|.|.++|+|+|.++....+...... ...+.|.|.++..+|+|.|+|.|.|. |....+
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~ 75 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKS 75 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeE
Confidence 689999999999999999999987654333221 23567999999999999999999999 877665
No 58
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.65 E-value=3.7e-15 Score=89.04 Aligned_cols=65 Identities=17% Similarity=0.347 Sum_probs=53.4
Q ss_pred EEEEEeecCCCeeEEEeCCEEeccCcceEEEE-----ecceEEEEEcccCCCCCEEEEEEEEcC-CCceEE
Q psy8425 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQF-----KKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVS 94 (176)
Q Consensus 30 l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s 94 (176)
+.|.+.|.|.|+++|+|||.+|..+.+..... ....+.|.|.++..+|+|.|+|.|.|. |....+
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~ 73 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN 73 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence 67999999999999999999998765443221 123568999999999999999999999 877665
No 59
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.64 E-value=2.9e-15 Score=92.31 Aligned_cols=75 Identities=20% Similarity=0.395 Sum_probs=57.6
Q ss_pred CCcEEEEEEEeecCCCeeEEEeC----CEEeccCcceEEEEe---------cceEEEEEcccCCCCCEEEEEEEEcC-CC
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFKD----NVEITTNKRLKIQFK---------KKRSTLIITRIRSEDAGRYECRGTGV-HK 90 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~~----g~~l~~~~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~ 90 (176)
|+++.|.|.+.|.|.|.+.|+|+ |..+..+........ .....|.|.+++.+|+|.|+|.|.|. |.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78899999999999999999984 444443222111110 12368999999999999999999999 88
Q ss_pred ceEEEEEEEEE
Q psy8425 91 DVVSAFAEVSI 101 (176)
Q Consensus 91 ~~~s~~~~l~V 101 (176)
...+ +.|.|
T Consensus 81 ~~~~--a~L~V 89 (90)
T cd05858 81 SHHS--AWLTV 89 (90)
T ss_pred ccce--EEEEE
Confidence 8877 88877
No 60
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.64 E-value=3e-15 Score=88.88 Aligned_cols=70 Identities=34% Similarity=0.636 Sum_probs=54.7
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEecc--CcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITT--NKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V 101 (176)
++|.|.+.|.|.|.+.|+|++.++.. ..++.. ..++.|.|.+++.+|+|.|.|.|.|. |.. .+..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~---~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~-~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ---LRSGALQIENSEESDQGKYECVATNSAGTR-YSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEE---cCCcEEEECCCChhhCEEEEEEEECCCCce-EcccEEEEE
Confidence 47999999999999999999998863 333332 34567999999999999999999999 553 232266666
No 61
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.64 E-value=3.9e-15 Score=88.84 Aligned_cols=73 Identities=27% Similarity=0.543 Sum_probs=60.5
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEEe
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSIN 102 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V~ 102 (176)
+.|.|.+.|.|.|.+.|+|++..+....+.++........|.|.++..+|+|.|+|.+.|. |..... +.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~--~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDI--SSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceE--EEEEEE
Confidence 3689999999999999999999887654434444345568999999999999999999999 888777 888775
No 62
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.64 E-value=3.1e-15 Score=87.51 Aligned_cols=67 Identities=28% Similarity=0.520 Sum_probs=53.8
Q ss_pred CCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEE
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEV 99 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l 99 (176)
|+++.|.|.+.|.|.|.+.|+|++.++....+.. .....|.|.++. |+|.|+|.|.|. |....+ +.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~----~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~--a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMP----VGRNVLELTNIY--ESANYTCVAISSLGMIEAT--AQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCcccee----cCccEEEEeccc--cCeeEEEEEEeCCCEEEEE--EEE
Confidence 6889999999999999999999999886544322 234578999874 799999999999 876665 544
No 63
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.64 E-value=1.5e-15 Score=90.42 Aligned_cols=72 Identities=22% Similarity=0.500 Sum_probs=55.2
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccC-cceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTN-KRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V 101 (176)
+.|.|.+.|.|.|.++|+|++...... ...++........|.|.+++.+|+|.|.|.|.|. |....+ +.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~--~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISAN--ATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEee--EEEEE
Confidence 478999999999999999998643221 1112222234568999999999999999999999 877766 77776
No 64
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.64 E-value=4e-15 Score=89.58 Aligned_cols=71 Identities=15% Similarity=0.415 Sum_probs=57.6
Q ss_pred EeCCceeEEecCCcEEEEEEEeecCCC-eeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCc
Q psy8425 14 VSGLRNVSVKLRQSLRLVCRCKGNPLP-AVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKD 91 (176)
Q Consensus 14 ~~~~~~~~v~~G~~~~l~C~~~g~p~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~ 91 (176)
...|+++.+.+|+.+.|.|.+.|.|.| .+.|+|+|.++... .. ...+.|.|..+ .|+|.|.|.|.|. |..
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~----~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~ 73 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PA----PSPSVLNVPGL--NETSKFSCEAHNAKGVT 73 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CC----CCCCEEEEccc--cCCeEEEEEEEeccCcE
Confidence 456778899999999999999999999 79999999988641 11 23457888887 4789999999999 644
Q ss_pred e
Q psy8425 92 V 92 (176)
Q Consensus 92 ~ 92 (176)
.
T Consensus 74 ~ 74 (81)
T cd05749 74 T 74 (81)
T ss_pred E
Confidence 3
No 65
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.64 E-value=1.3e-14 Score=90.83 Aligned_cols=87 Identities=21% Similarity=0.292 Sum_probs=67.8
Q ss_pred CCeEEeCCceeEEecCCcEEEEEEEeecCCC-eeEEEeCCEEeccC--cceEEEEe----cceEEEEEcccCCCC-CEEE
Q psy8425 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLP-AVSWFKDNVEITTN--KRLKIQFK----KKRSTLIITRIRSED-AGRY 81 (176)
Q Consensus 10 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p-~i~W~~~g~~l~~~--~~~~~~~~----~~~~~L~i~~v~~~d-~G~Y 81 (176)
||.+.. +....+.+|+.+.|.|.+.|.|.| .+.|++++..+... .++.+... ...++|.|.+++.+| .|.|
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 566644 556778999999999999999999 69999999988653 35544432 123589999999855 8999
Q ss_pred EEEEEcC-CCceEEEEEEE
Q psy8425 82 ECRGTGV-HKDVVSAFAEV 99 (176)
Q Consensus 82 ~C~a~n~-g~~~~s~~~~l 99 (176)
.|.|.|. |..... +.|
T Consensus 81 ~C~A~N~~G~~~~~--~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAI--ISL 97 (98)
T ss_pred EEEEEcCCCcccEE--EEe
Confidence 9999999 877766 554
No 66
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.63 E-value=1.3e-14 Score=89.72 Aligned_cols=83 Identities=24% Similarity=0.459 Sum_probs=62.7
Q ss_pred eCCceeEEecCCcEEEEEEEeecCCCeeEEEe-CCEEeccCcceEEEEe-cceEEEEEcccCCCCCEEEEEEEEcC-CCc
Q psy8425 15 SGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFK-DNVEITTNKRLKIQFK-KKRSTLIITRIRSEDAGRYECRGTGV-HKD 91 (176)
Q Consensus 15 ~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~-~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~ 91 (176)
..|.+..+..|+++.|.|.+.|.| +.+.|++ ++..+....+..+... ...++|.|.+++.+|+|.|+|.|.|. |..
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~ 83 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTE 83 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCc
Confidence 446668899999999999999997 4999998 6766655444433321 34568999999999999999999998 543
Q ss_pred -eEEEEEEEE
Q psy8425 92 -VVSAFAEVS 100 (176)
Q Consensus 92 -~~s~~~~l~ 100 (176)
..+ +.|.
T Consensus 84 ~~~s--v~l~ 91 (92)
T cd04977 84 SEAT--VNLK 91 (92)
T ss_pred ceeE--EEEE
Confidence 333 5554
No 67
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.63 E-value=3.7e-15 Score=91.84 Aligned_cols=76 Identities=16% Similarity=0.345 Sum_probs=57.1
Q ss_pred CCcEEEEEEEeecCCCeeEEEeCC----EEeccCcc-e-EEEE-------ecceEEEEEcccCCCCCEEEEEEEEcC-CC
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFKDN----VEITTNKR-L-KIQF-------KKKRSTLIITRIRSEDAGRYECRGTGV-HK 90 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~~g----~~l~~~~~-~-~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~ 90 (176)
|+.+.|.|.+.|.|.|.++|+|++ ..+..... . .... ......|.|.+++.+|+|.|+|.|.|. |.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 688999999999999999999953 33322111 1 1110 022357999999999999999999999 88
Q ss_pred ceEEEEEEEEEe
Q psy8425 91 DVVSAFAEVSIN 102 (176)
Q Consensus 91 ~~~s~~~~l~V~ 102 (176)
...+ +.|.|+
T Consensus 81 ~~~s--a~L~V~ 90 (90)
T cd04974 81 SHHS--AWLTVL 90 (90)
T ss_pred ccCC--EEEEeC
Confidence 8877 888874
No 68
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.62 E-value=6.4e-15 Score=87.44 Aligned_cols=72 Identities=26% Similarity=0.526 Sum_probs=57.2
Q ss_pred CCcEEEEEEEeecCCCeeEEEe-CCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFK-DNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V 101 (176)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+... ...++|.|..+..+|+|.|+|.|.|. |....+ +.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~--~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLV---YDNGTLDILITTVKDTGSFTCIASNAAGEATAT--VELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEE---ecCCEEEEEECChhhCEEEEEEEECCCCeEEEE--EEEEC
Confidence 7889999999999999999997 6766655443322 23468999999999999999999999 776655 66553
No 69
>KOG4221|consensus
Probab=99.61 E-value=1.6e-14 Score=119.44 Aligned_cols=131 Identities=21% Similarity=0.351 Sum_probs=100.4
Q ss_pred cccCCCeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEE
Q psy8425 6 RATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRG 85 (176)
Q Consensus 6 ~v~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 85 (176)
.+...+.|...+.+..+..|+.+.|.|.+.+.|.|.+.|.+|..++..+.++.. ..++.|.|.+++..|.|.|+|.+
T Consensus 136 ~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~---lpsG~L~I~~~qp~d~g~yrc~v 212 (1381)
T KOG4221|consen 136 ALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIV---LPSGALEISGLQPSDTGEYRCVV 212 (1381)
T ss_pred EecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEE---cCCCcEEecccccCCCceEEEEE
Confidence 344556677778888999999999999999999999999999998887665544 45688999999999999999999
Q ss_pred EcCCCceEEEEEEEEEecCCC---------------------------CCCCCCCCCeEEe--------------c-CCE
Q psy8425 86 TGVHKDVVSAFAEVSINLRPD---------------------------NMGGPCPLDSYCL--------------N-GGS 123 (176)
Q Consensus 86 ~n~g~~~~s~~~~l~V~~~p~---------------------------~~g~p~p~~~~~~--------------~-~~~ 123 (176)
.+.+....+..+.|+|...|. +.|.|.|.-.|.. - +++
T Consensus 213 t~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~s 292 (1381)
T KOG4221|consen 213 TGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSS 292 (1381)
T ss_pred ecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccc
Confidence 998544445558888873332 4566666333322 2 344
Q ss_pred EEE----eccCCeeEEEecCC
Q psy8425 124 CTY----YDTVGELVCQCAEG 140 (176)
Q Consensus 124 ~~i----~~d~g~y~C~~~~n 140 (176)
+.| ..|+|.|+|. |+|
T Consensus 293 lliS~a~~~dSg~YtC~-Atn 312 (1381)
T KOG4221|consen 293 LLISNATDDDSGKYTCR-ATN 312 (1381)
T ss_pred eEEeccccccCceEEEE-ecC
Confidence 444 6889999999 888
No 70
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.61 E-value=3e-15 Score=92.80 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=62.2
Q ss_pred ceeEEecCCcEEEEEEEee-----cCCCeeEEEeCCEEeccC--cceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-C
Q psy8425 18 RNVSVKLRQSLRLVCRCKG-----NPLPAVSWFKDNVEITTN--KRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-H 89 (176)
Q Consensus 18 ~~~~v~~G~~~~l~C~~~g-----~p~p~i~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g 89 (176)
.+..+.+|+.+.|.|.+.+ .|.|.+.|+|++..+... ...++. .....|.|.++..+|+|.|.|.+.|. |
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~--~~~~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMH--QQKDLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceee--ecCCeEEEccCCcccCeEEEEEEcCCCc
Confidence 3566789999999999998 688999999998764321 122222 23468999999999999999999999 7
Q ss_pred CceEEEEEEEEE
Q psy8425 90 KDVVSAFAEVSI 101 (176)
Q Consensus 90 ~~~~s~~~~l~V 101 (176)
....+ +.|.|
T Consensus 85 ~~~~~--~~L~v 94 (94)
T cd05756 85 CMKVS--ISLTV 94 (94)
T ss_pred cEEEE--EEEEC
Confidence 77766 66654
No 71
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.61 E-value=3.4e-15 Score=87.42 Aligned_cols=68 Identities=28% Similarity=0.594 Sum_probs=55.2
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V 101 (176)
++|.|.+.|.|.|.+.|+|++..+.. .++.+. ....|.|.+++.+|+|.|+|.|.|. |....+ +.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~--~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEAS--ASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEE--EEEEC
Confidence 47999999999999999999877654 333332 4468999999999999999999999 877666 66654
No 72
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.60 E-value=7.6e-15 Score=86.34 Aligned_cols=69 Identities=32% Similarity=0.591 Sum_probs=55.7
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEE
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V 101 (176)
+.|.|.+.|.|.|.+.|+|++..+... +.. .......|.|.+++.+|+|.|+|.|.|. |....+ +.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~--~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTK--FENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHT--ISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-cee--EecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEE--EEEEE
Confidence 478999999999999999999877542 222 2234568999999999999999999999 877666 77665
No 73
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.60 E-value=1e-14 Score=85.67 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=51.7
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEE
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVS 94 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s 94 (176)
+.|.|.+.|.|.|++.|+|+|.++..... +... ...+|.|.++..+|+|.|+|.|.|. ......
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~--~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~ 65 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHV--DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKN 65 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEEe--CCCEEEECcCCHHHCEEEEEEEEccccceEee
Confidence 36899999999999999999998876422 2222 3358999999999999999999998 555555
No 74
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.58 E-value=1.7e-14 Score=86.30 Aligned_cols=65 Identities=25% Similarity=0.615 Sum_probs=50.9
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCC----CCCEEEEEEEEcC-CCce
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRS----EDAGRYECRGTGV-HKDV 92 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~n~-g~~~ 92 (176)
+.|.|.+.|.|.|.++|+|+|..+......++......+.|.|.++.. +|+|.|.|.|.|. |...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 478999999999999999999988654333344334567899988754 6899999999999 6543
No 75
>KOG4222|consensus
Probab=99.58 E-value=1.7e-14 Score=118.67 Aligned_cols=150 Identities=23% Similarity=0.376 Sum_probs=104.3
Q ss_pred CCCeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcc--eEEEEecceEEEEEcccC-----CCCCEEE
Q psy8425 9 IHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKR--LKIQFKKKRSTLIITRIR-----SEDAGRY 81 (176)
Q Consensus 9 ~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~v~-----~~d~G~Y 81 (176)
.+|+|+..+.++.+..|+.++|.|.++|.|.|+|+|||+|.....+.. .++. ...++|.+..+. ..|.|.|
T Consensus 30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~--lp~gsLf~l~~ahg~~a~~d~G~y 107 (1281)
T KOG4222|consen 30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFL--LPDGSLFLLRLAHGKKAGHDHGVY 107 (1281)
T ss_pred CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCccee--cCCccEEEEecccCCcccCCCcee
Confidence 578999999999999999999999999999999999999965433211 2222 234455554331 2389999
Q ss_pred EEEEEcC-CCceEEEEEEEEEecCCC-----------------------CCCCCCC----------------CCeEEecC
Q psy8425 82 ECRGTGV-HKDVVSAFAEVSINLRPD-----------------------NMGGPCP----------------LDSYCLNG 121 (176)
Q Consensus 82 ~C~a~n~-g~~~~s~~~~l~V~~~p~-----------------------~~g~p~p----------------~~~~~~~~ 121 (176)
.|.+.|. |... +..+.|.|...++ ..|.|+| +....+.|
T Consensus 108 ~cvasn~~g~av-Sr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisg 186 (1281)
T KOG4222|consen 108 SCVASNRLGEAV-SRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISG 186 (1281)
T ss_pred EeeecCccceee-ecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecC
Confidence 9999999 5433 2225555543222 3344554 12445789
Q ss_pred CEEEE----eccCCeeEEEecCCcccCcCcccccccccccccceeee
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQRCESKDVYNRSSMYKPYFSW 164 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~~c~~~~~~~~~~~~~p~~~~ 164 (176)
|.+.| ..|.|.|.|+ ++|-.|.|-+. ....++..+|+|..
T Consensus 187 G~LlIsnvrksD~GtY~CV-atNmvG~ReS~--~A~lsv~e~P~f~~ 230 (1281)
T KOG4222|consen 187 GNLLISNVRKSDEGTYACV-ATNMVGERESI--PARLSVQEKPWFWK 230 (1281)
T ss_pred CcEEEeccccCCCceeeee-ecccccccccc--cceeeeccCCcccc
Confidence 99999 7999999999 99999998653 33334456666543
No 76
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.57 E-value=1.9e-14 Score=85.53 Aligned_cols=67 Identities=33% Similarity=0.600 Sum_probs=54.1
Q ss_pred EEEEEEEee-cCCCeeEEEeCCEEeccCcceE---EEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEE
Q psy8425 28 LRLVCRCKG-NPLPAVSWFKDNVEITTNKRLK---IQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVS 94 (176)
Q Consensus 28 ~~l~C~~~g-~p~p~i~W~~~g~~l~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s 94 (176)
+.|.|.+.| .|.|.+.|+|+|.++....+.. +.......+|.|.++..+|+|.|.|.|.|. |....+
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 72 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVT 72 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence 468999999 9999999999999887654332 222234578999999999999999999999 776554
No 77
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.57 E-value=1.9e-14 Score=86.09 Aligned_cols=67 Identities=16% Similarity=0.386 Sum_probs=56.7
Q ss_pred CeEEeCCceeEEecCCcEEEEEEEeecCCC-eeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLP-AVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 11 p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
|.+...|+...+.+|++++|.|.+.+.|.+ .+.|+|||..+.. ....|.|.++ .+|+|.|+|.|.|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 456667888889999999999999998864 6999999987732 3457899999 99999999999886
No 78
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.57 E-value=2e-14 Score=86.72 Aligned_cols=74 Identities=20% Similarity=0.396 Sum_probs=55.0
Q ss_pred CCcEEEEEEEeecCCCeeEEEeCCE---E--eccCcc-eEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEE
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFKDNV---E--ITTNKR-LKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFA 97 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~~g~---~--l~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~ 97 (176)
|+.+.|.|.+.|.|.|.+.|+|++. . +..... ..+.. .....|.|.+++.+|+|.|.|.|.|. |..... +
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~--~ 77 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV-TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN--F 77 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE-ccccEEEEccCCcccCEEEEEEEecCCceEEEE--E
Confidence 7889999999999999999999732 1 111110 01111 23468999999999999999999999 877766 7
Q ss_pred EEEE
Q psy8425 98 EVSI 101 (176)
Q Consensus 98 ~l~V 101 (176)
.|.|
T Consensus 78 ~l~v 81 (81)
T cd05765 78 PLSV 81 (81)
T ss_pred EEeC
Confidence 7654
No 79
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.56 E-value=5.1e-14 Score=86.93 Aligned_cols=79 Identities=23% Similarity=0.494 Sum_probs=60.4
Q ss_pred CeEEeCCceeEEecC---CcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccC-CCCCEEEEEEEE
Q psy8425 11 PIEVSGLRNVSVKLR---QSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIR-SEDAGRYECRGT 86 (176)
Q Consensus 11 p~~~~~~~~~~v~~G---~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~ 86 (176)
|.|...+.++.+.++ +.+.|.|.+.|.|.|.++|+|++..+.......... ..+.|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL--VGGNLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE--ECCEEEEecCCccCCCEEEEEEEE
Confidence 677777777765544 579999999999999999999999885322222222 33578998887 489999999999
Q ss_pred cC-CCc
Q psy8425 87 GV-HKD 91 (176)
Q Consensus 87 n~-g~~ 91 (176)
|. |..
T Consensus 80 N~~G~~ 85 (91)
T cd04967 80 NIVGTV 85 (91)
T ss_pred cCCCEE
Confidence 99 653
No 80
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.56 E-value=4.4e-14 Score=84.43 Aligned_cols=65 Identities=26% Similarity=0.572 Sum_probs=49.6
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCC----CCCEEEEEEEEcC-CCce
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRS----EDAGRYECRGTGV-HKDV 92 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~n~-g~~~ 92 (176)
+.|.|.+.|.|.|+++|+|+|.++.......+.....+++|.|..+.. .|.|.|+|.|.|. |...
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAV 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEE
Confidence 478999999999999999999987543333333334567888887764 3789999999999 6544
No 81
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.55 E-value=8.3e-14 Score=83.23 Aligned_cols=65 Identities=22% Similarity=0.544 Sum_probs=48.6
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCC----CCCEEEEEEEEcC-CCce
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRS----EDAGRYECRGTGV-HKDV 92 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~n~-g~~~ 92 (176)
+.|.|.+.|.|.|.++|+|+|..+......++......++|.|..+.. +|+|.|.|.|.|. |...
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 468999999999999999999876432222233334567899987642 4699999999999 6544
No 82
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.54 E-value=5.7e-14 Score=86.34 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=61.2
Q ss_pred CceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCc--ceEEEEecceEEEEEcccCCCCCEEEEEEEEcCCCceEE
Q psy8425 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNK--RLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVHKDVVS 94 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~s 94 (176)
+..+.+.+|+++.|.|.+.+ |.+.+.|++++..+.... ..++.. ....|.|.+++.+|+|.|.|.|.+.+.....
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~ 79 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV--TEDGLLIRSVSPADAGVYTCQSVEHGFKQTL 79 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE--cCCCEEEccCCHHHCEEEEEEEecCccceeE
Confidence 45678899999999999887 888999999998776532 112222 2346999999999999999999987333333
Q ss_pred EEEEEEEe
Q psy8425 95 AFAEVSIN 102 (176)
Q Consensus 95 ~~~~l~V~ 102 (176)
....|.|.
T Consensus 80 ~~~~l~V~ 87 (89)
T cd04979 80 ATYSLNVL 87 (89)
T ss_pred eEEEEEEe
Confidence 22666664
No 83
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.53 E-value=4.7e-13 Score=83.14 Aligned_cols=87 Identities=18% Similarity=0.273 Sum_probs=68.5
Q ss_pred CCeEEeCCceeEEecCCcEEEEEEEeecCCC-eeEEEeCCEEeccC--cceEEEEe----cceEEEEEcccCCCC-CEEE
Q psy8425 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLP-AVSWFKDNVEITTN--KRLKIQFK----KKRSTLIITRIRSED-AGRY 81 (176)
Q Consensus 10 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p-~i~W~~~g~~l~~~--~~~~~~~~----~~~~~L~i~~v~~~d-~G~Y 81 (176)
||.+ .....+.+.+|+++.|.|.+.+.|.| .+.|.+++..+... .++.+... ...++|.|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 5665 66777889999999999999888887 67898888777543 56655543 366889999998777 7999
Q ss_pred EEEEEcC-CCceEEEEEEE
Q psy8425 82 ECRGTGV-HKDVVSAFAEV 99 (176)
Q Consensus 82 ~C~a~n~-g~~~~s~~~~l 99 (176)
.|.|.|. |..... +.|
T Consensus 81 ~C~a~N~~G~d~~~--i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAI--IQL 97 (98)
T ss_pred EEEEEeCCccceEE--EEe
Confidence 9999999 887655 544
No 84
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.53 E-value=2e-13 Score=84.85 Aligned_cols=83 Identities=18% Similarity=0.322 Sum_probs=61.6
Q ss_pred CceeEEecCCcEEEEEEEeecCCCeeEEEeCC--------EEeccCcceEEEEe-cceEEEEEcccCCCCCEEEEEEEEc
Q psy8425 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDN--------VEITTNKRLKIQFK-KKRSTLIITRIRSEDAGRYECRGTG 87 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g--------~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n 87 (176)
++++.+.+|+++.|.|.+.+.|.+.+.|++.+ .....+.|+.+... ....+|.|.+++.+|+|.|.|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 46788999999999999999999999998632 22222345544222 3457899999999999999999998
Q ss_pred CCCceEEEEEEEEE
Q psy8425 88 VHKDVVSAFAEVSI 101 (176)
Q Consensus 88 ~g~~~~s~~~~l~V 101 (176)
......+ +.|.|
T Consensus 84 ~~~~~~~--~~l~v 95 (95)
T cd07701 84 MPVKTSK--AYLTV 95 (95)
T ss_pred ecCccEE--EEEEC
Confidence 7333444 66654
No 85
>KOG4194|consensus
Probab=99.52 E-value=3.9e-14 Score=110.63 Aligned_cols=140 Identities=23% Similarity=0.358 Sum_probs=101.5
Q ss_pred CCCeEEeCCceeEEecCCcEEEEEEEeec--CCCeeEEEeCCEEeccC-----cceEEEE--------ecceEEEEEccc
Q psy8425 9 IHPIEVSGLRNVSVKLRQSLRLVCRCKGN--PLPAVSWFKDNVEITTN-----KRLKIQF--------KKKRSTLIITRI 73 (176)
Q Consensus 9 ~~p~~~~~~~~~~v~~G~~~~l~C~~~g~--p~p~i~W~~~g~~l~~~-----~~~~~~~--------~~~~~~L~i~~v 73 (176)
.+|++...|.++....|.+++|+|.+.+. .+-++.|.+++.....- ..+..+. ....+.|++.+|
T Consensus 502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV 581 (873)
T KOG4194|consen 502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV 581 (873)
T ss_pred CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence 46888899999999999999999998763 33488999977532210 0000000 023467999999
Q ss_pred CCCCCEEEEEEEEcC-CCceEEEEEEEEEecCCC---------------------CCCCCCCCCeEEecCCE--------
Q psy8425 74 RSEDAGRYECRGTGV-HKDVVSAFAEVSINLRPD---------------------NMGGPCPLDSYCLNGGS-------- 123 (176)
Q Consensus 74 ~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V~~~p~---------------------~~g~p~p~~~~~~~~~~-------- 123 (176)
...|.|.|+|++.|. |..- +..+.|+|...|. +.|.|.|+-.+...||+
T Consensus 582 t~td~grYQCVvtN~FGSty-sqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eR 660 (873)
T KOG4194|consen 582 TFTDEGRYQCVVTNHFGSTY-SQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARER 660 (873)
T ss_pred ecccCceEEEEEecccCcch-hheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhh
Confidence 999999999999999 5543 3348999998776 78888885555544444
Q ss_pred ----------EEE----eccCCeeEEEecCCcccCcCcccc
Q psy8425 124 ----------CTY----YDTVGELVCQCAEGYKGQRCESKD 150 (176)
Q Consensus 124 ----------~~i----~~d~g~y~C~~~~n~~g~~c~~~~ 150 (176)
..| .+|.|.|+|. |.|..|+.--.+.
T Consensus 661 Rl~Vmpedd~f~Itnvk~eD~GiYtC~-A~n~AG~isanAt 700 (873)
T KOG4194|consen 661 RLHVMPEDDVFFITNVKIEDQGIYTCT-AQNVAGQISANAT 700 (873)
T ss_pred eeeecCCCCEEEEecccccccceeEEe-eeccccceeeceE
Confidence 222 6999999999 9999998654443
No 86
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.52 E-value=1.3e-13 Score=84.03 Aligned_cols=79 Identities=23% Similarity=0.476 Sum_probs=62.6
Q ss_pred EEeCCceeEEecCCcEEEEEEEee-cCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CC
Q psy8425 13 EVSGLRNVSVKLRQSLRLVCRCKG-NPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HK 90 (176)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~~~g-~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~ 90 (176)
.+..+..+.+.+|++++|.|.+.+ .|.+.+.|++++..+.... . ...+.|.|.+++.+|+|.|.|.|.|. |.
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~---~---~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~ 77 (85)
T cd05754 4 TVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA---M---DFNGILTIRNVQLSDAGTYVCTGSNMLDT 77 (85)
T ss_pred EecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc---c---ccCCEEEECCCCHHHCEEEEEEEeccCCe
Confidence 345677788999999999999875 6888999999886653311 1 23568999999999999999999999 77
Q ss_pred ceEEEEEEE
Q psy8425 91 DVVSAFAEV 99 (176)
Q Consensus 91 ~~~s~~~~l 99 (176)
...+ +.|
T Consensus 78 ~~~~--~~l 84 (85)
T cd05754 78 DEAT--ATL 84 (85)
T ss_pred EeEE--EEE
Confidence 7666 544
No 87
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.52 E-value=3e-13 Score=96.67 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=61.0
Q ss_pred CceeEEecCCcEEEEEEEeecC-----------CCeeEEEeCCEEe--c-cCcce---EE---EEecceEEEEEcccCCC
Q psy8425 17 LRNVSVKLRQSLRLVCRCKGNP-----------LPAVSWFKDNVEI--T-TNKRL---KI---QFKKKRSTLIITRIRSE 76 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~~~g~p-----------~p~i~W~~~g~~l--~-~~~~~---~~---~~~~~~~~L~i~~v~~~ 76 (176)
...+.+.+|+.+.|.|.+.+.| .+.+.|+|++... . .+.+. .+ ........|.|.+++.+
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI 108 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence 3567889999999999987644 3489999987542 1 11110 00 00123468999999999
Q ss_pred CCEEEEEEEEcC-CCceEEEEEEEEEecC
Q psy8425 77 DAGRYECRGTGV-HKDVVSAFAEVSINLR 104 (176)
Q Consensus 77 d~G~Y~C~a~n~-g~~~~s~~~~l~V~~~ 104 (176)
|+|.|.|.|.|. +....+ +.|.|..+
T Consensus 109 DsG~Y~C~a~N~~~~~~~~--i~L~V~~~ 135 (227)
T PHA02826 109 DEGIYICTISSGNICEEST--IRLTFDSG 135 (227)
T ss_pred HCEEEEEEEEECCcceEEE--EEEEEecC
Confidence 999999999998 666666 77777654
No 88
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.50 E-value=6.7e-13 Score=80.57 Aligned_cols=79 Identities=28% Similarity=0.524 Sum_probs=62.0
Q ss_pred eEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEE-EEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEE
Q psy8425 20 VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKI-QFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFA 97 (176)
Q Consensus 20 ~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~ 97 (176)
+.+..|+.+.|.|.+.+.|.+.+.|++++..+........ ........|.|.++..+|+|.|.|.+.|. |....+ +
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~--~ 81 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHT--Y 81 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEE--E
Confidence 4567899999999999999999999999988765433322 11234467999999999999999999998 776655 6
Q ss_pred EEE
Q psy8425 98 EVS 100 (176)
Q Consensus 98 ~l~ 100 (176)
.|.
T Consensus 82 ~l~ 84 (85)
T cd05729 82 KVD 84 (85)
T ss_pred EEe
Confidence 554
No 89
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.49 E-value=3e-13 Score=82.23 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=56.3
Q ss_pred CCcEEEEEEEeec--CCCeeEEEeCCEEeccCcce---EE--EEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEE
Q psy8425 25 RQSLRLVCRCKGN--PLPAVSWFKDNVEITTNKRL---KI--QFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAF 96 (176)
Q Consensus 25 G~~~~l~C~~~g~--p~p~i~W~~~g~~l~~~~~~---~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~ 96 (176)
|+++.|.|.+.+. |.|.+.|++++..+...... .. ......++|.|.+++.+|+|.|.|.|.|. +....+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s-- 78 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES-- 78 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE--
Confidence 7899999999999 78899999877655321110 00 11124578999999999999999999999 777777
Q ss_pred EEEEE
Q psy8425 97 AEVSI 101 (176)
Q Consensus 97 ~~l~V 101 (176)
+.|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 66655
No 90
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.49 E-value=1.1e-12 Score=81.30 Aligned_cols=82 Identities=16% Similarity=0.325 Sum_probs=60.2
Q ss_pred CceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEe--------ccCcceEEEEe-cceEEEEEcccCCCCCEEEEEEEEc
Q psy8425 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEI--------TTNKRLKIQFK-KKRSTLIITRIRSEDAGRYECRGTG 87 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l--------~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n 87 (176)
..++.+.+|+++.|.|.+.+.|.|.+.|++++..+ ..+.++.+... ....+|.|.++..+|+|.|+|.+..
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 35678999999999999999999999999977532 12233333221 2357999999999999999999988
Q ss_pred CCCceEEEEEEEE
Q psy8425 88 VHKDVVSAFAEVS 100 (176)
Q Consensus 88 ~g~~~~s~~~~l~ 100 (176)
....... +.|.
T Consensus 84 ~~~~~~~--~~~~ 94 (95)
T cd05882 84 MPVRTAK--ATVT 94 (95)
T ss_pred eccccEE--EEEE
Confidence 5333333 4444
No 91
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.49 E-value=3.1e-13 Score=80.57 Aligned_cols=67 Identities=34% Similarity=0.569 Sum_probs=51.4
Q ss_pred EEEEEEEee-cCCCeeEEEeCCEEeccCc----ceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEE
Q psy8425 28 LRLVCRCKG-NPLPAVSWFKDNVEITTNK----RLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVS 94 (176)
Q Consensus 28 ~~l~C~~~g-~p~p~i~W~~~g~~l~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s 94 (176)
+.|.|.+.+ .|.+.+.|+++|..+.... ++.+......+.|.|.++..+|+|.|.|.+.|. |....+
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~ 73 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVT 73 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEE
Confidence 469999875 6778999999999886421 223322235578999999999999999999999 766655
No 92
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.48 E-value=2.7e-13 Score=81.42 Aligned_cols=70 Identities=21% Similarity=0.460 Sum_probs=50.4
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEec--------cCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEE
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEIT--------TNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAE 98 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~--------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~ 98 (176)
++|.|.+.|.|.|.+.|++++.... ...++.+ ..+++|.|.++..+|+|.|.|.|.|. |..... .+.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~-~~~ 76 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL---LSNGSLLIKHVLEEDSGYYLCKVSNDVGADASK-SMV 76 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE---ecCCeEEECcCCcccCEEEEEEEEeCCCCCCce-EEE
Confidence 4799999999999999999643211 1222222 24478999999999999999999999 655322 155
Q ss_pred EEE
Q psy8425 99 VSI 101 (176)
Q Consensus 99 l~V 101 (176)
|.|
T Consensus 77 l~~ 79 (79)
T cd05734 77 LTV 79 (79)
T ss_pred EeC
Confidence 543
No 93
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.48 E-value=6.1e-13 Score=80.82 Aligned_cols=78 Identities=22% Similarity=0.413 Sum_probs=54.9
Q ss_pred CCcEEEEEEEeecCCCeeEEEeCCEEeccCc----ceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEE
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFKDNVEITTNK----RLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEV 99 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l 99 (176)
|++++|.|.+.+.|.+.+.|++.++...... +..+......++|.|.+++.+|+|.|.|.|.|. .....+..+.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999999999999998775432211 111111123578999999999999999999997 42222322666
Q ss_pred EEe
Q psy8425 100 SIN 102 (176)
Q Consensus 100 ~V~ 102 (176)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 664
No 94
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.48 E-value=5.5e-13 Score=81.10 Aligned_cols=67 Identities=30% Similarity=0.462 Sum_probs=55.8
Q ss_pred CceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccC-cceEEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTN-KRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
|++..+..|+++.|.|.+.+ +.+.+.|++||.++..+ .++.+ ....|.|.+++.+|+|.|+|.+.+.
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~----~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL----YRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE----ECCcEEEeCCCHHHCEEEEEEEEec
Confidence 56788999999999999764 67899999999999775 23322 2357999999999999999999987
No 95
>KOG4222|consensus
Probab=99.47 E-value=1.4e-13 Score=113.35 Aligned_cols=141 Identities=25% Similarity=0.424 Sum_probs=113.5
Q ss_pred CCccccCCCeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEE
Q psy8425 3 KGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYE 82 (176)
Q Consensus 3 ~~l~v~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 82 (176)
..|.|+++|.|...+.++.+..|..+.+.|.+.|.|.|.+.|.+++..+.. .++.+. .++.+|.|.++...|.|.|.
T Consensus 218 A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~-~ry~i~--~d~qtl~i~r~tp~deg~y~ 294 (1281)
T KOG4222|consen 218 ARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPR-SRYSIL--DDTQTLRIDRVTPTDEGTYV 294 (1281)
T ss_pred ceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCc-cceeee--eccccccccccCCCccccee
Confidence 367899999999999999999999999999999999999999998777765 455554 34578999999999999999
Q ss_pred EEEEcC-CCceEEEEEEEEEecCCC---------------------CCCCCCCCCeEEec--------------------
Q psy8425 83 CRGTGV-HKDVVSAFAEVSINLRPD---------------------NMGGPCPLDSYCLN-------------------- 120 (176)
Q Consensus 83 C~a~n~-g~~~~s~~~~l~V~~~p~---------------------~~g~p~p~~~~~~~-------------------- 120 (176)
|.+.|. |....+ +.++|+++|. ..|+|.|...+...
T Consensus 295 C~a~n~vG~l~as--a~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~sv 372 (1281)
T KOG4222|consen 295 CPAENLVGGLEAS--ATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSV 372 (1281)
T ss_pred eeccccccccccc--cceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCcccee
Confidence 999999 888888 9999999887 56777763322221
Q ss_pred --CCEEEE----eccCCeeEEEecCCcccCcCccc
Q psy8425 121 --GGSCTY----YDTVGELVCQCAEGYKGQRCESK 149 (176)
Q Consensus 121 --~~~~~i----~~d~g~y~C~~~~n~~g~~c~~~ 149 (176)
-|++.| ..|.|.|.|. +.+..|..-..+
T Consensus 373 s~~g~L~it~v~~~d~g~Yvcq-~~~~~~ss~~~a 406 (1281)
T KOG4222|consen 373 SPTGTLTITNVRQSDEGYYVCQ-TQTSAGSSLTKA 406 (1281)
T ss_pred cCCCCcccccccccccceEeec-ccccccccccce
Confidence 123333 6889999999 788777654443
No 96
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.45 E-value=1.7e-12 Score=97.82 Aligned_cols=117 Identities=18% Similarity=0.197 Sum_probs=79.8
Q ss_pred eEEecCCcEEEEEEE-----eecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceE
Q psy8425 20 VSVKLRQSLRLVCRC-----KGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVV 93 (176)
Q Consensus 20 ~~v~~G~~~~l~C~~-----~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~ 93 (176)
..+.+|+.+.|.|.+ .|.|.+++.|+|+|.... + .... .....|.|.++..+|+|.|+|.+.|. +....
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~-~~~~-~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~ 110 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADND---R-IIPI-DNGSNMLILNPTQSDSGIYICITKNETYCDMM 110 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---e-EEEc-cCCceEEEcccCcccCeEEEEEEECCCcceEE
Confidence 346689999999986 688989999999985321 1 1111 23345889999999999999999999 66666
Q ss_pred EEEEEEEEecCC--C--------------------------CCCCCCCCC-----------e-EEecCCEEEE----ecc
Q psy8425 94 SAFAEVSINLRP--D--------------------------NMGGPCPLD-----------S-YCLNGGSCTY----YDT 129 (176)
Q Consensus 94 s~~~~l~V~~~p--~--------------------------~~g~p~p~~-----------~-~~~~~~~~~i----~~d 129 (176)
+ +.|.|.... . ..+.|.|.- + ....++.|.| .+|
T Consensus 111 s--~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d 188 (326)
T PHA02785 111 S--LNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKND 188 (326)
T ss_pred E--EEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhh
Confidence 6 667665321 1 012332211 1 1123467777 699
Q ss_pred CCeeEEEecCCcccC
Q psy8425 130 VGELVCQCAEGYKGQ 144 (176)
Q Consensus 130 ~g~y~C~~~~n~~g~ 144 (176)
.|.|+|. +.|..|.
T Consensus 189 ~G~Y~C~-~~n~~g~ 202 (326)
T PHA02785 189 AGYYTCV-LKYIYGD 202 (326)
T ss_pred CeEEEEE-EEeccCC
Confidence 9999999 8776664
No 97
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.44 E-value=1.2e-12 Score=80.75 Aligned_cols=72 Identities=26% Similarity=0.490 Sum_probs=57.1
Q ss_pred eeEEecCCcEEEEEEEeec-----CCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCce
Q psy8425 19 NVSVKLRQSLRLVCRCKGN-----PLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDV 92 (176)
Q Consensus 19 ~~~v~~G~~~~l~C~~~g~-----p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~ 92 (176)
.+.+.+|+.+.|.|...+. |.|.+.|+|++.++....+ .+. .+..|.|.++..+|+|.|+|.+.|. ++..
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~-~~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRK-RFV---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCcc-EEe---cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 3567889999999986542 5779999999999876433 221 5578999999999999999999998 6655
Q ss_pred EE
Q psy8425 93 VS 94 (176)
Q Consensus 93 ~s 94 (176)
..
T Consensus 80 ~~ 81 (92)
T cd05757 80 YN 81 (92)
T ss_pred EE
Confidence 55
No 98
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.43 E-value=1e-12 Score=79.65 Aligned_cols=74 Identities=23% Similarity=0.325 Sum_probs=55.7
Q ss_pred eeEEecCCcEEEEEEEee-cCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcCCCceEEEEE
Q psy8425 19 NVSVKLRQSLRLVCRCKG-NPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFA 97 (176)
Q Consensus 19 ~~~v~~G~~~~l~C~~~g-~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~s~~~ 97 (176)
...+.+|+.++|.|.+.+ .+.+.+.|+|+|..+... .....|.|.+++.+|+|.|+|.+.+......+..+
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~ 79 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPV 79 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCceecCCCE
Confidence 346899999999999854 556689999999766431 23468999999999999999999998333334234
Q ss_pred EEE
Q psy8425 98 EVS 100 (176)
Q Consensus 98 ~l~ 100 (176)
.|.
T Consensus 80 ~i~ 82 (83)
T cd05753 80 SIT 82 (83)
T ss_pred EEE
Confidence 444
No 99
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.39 E-value=7.1e-12 Score=77.90 Aligned_cols=83 Identities=22% Similarity=0.401 Sum_probs=59.6
Q ss_pred CceeEEecCCcEEEEEEEeecCCCeeEEEeCCEE-e-------ccCcceEEEEe-cceEEEEEcccCCCCCEEEEEEEEc
Q psy8425 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVE-I-------TTNKRLKIQFK-KKRSTLIITRIRSEDAGRYECRGTG 87 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~-l-------~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n 87 (176)
.+++.+.+|+++.|.|.+.+.+.+.+.|++.+.. + ....++.+... .....|.|.+++.+|+|.|.|.+.+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 4567899999999999998888899999862221 1 11244444221 2456899999999999999999998
Q ss_pred CCCceEEEEEEEEE
Q psy8425 88 VHKDVVSAFAEVSI 101 (176)
Q Consensus 88 ~g~~~~s~~~~l~V 101 (176)
......+ +.|+|
T Consensus 84 ~~~~~~~--~~~~v 95 (95)
T cd05717 84 MPVQTAK--ATVTV 95 (95)
T ss_pred CCCceEE--EEEEC
Confidence 7444545 55654
No 100
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.39 E-value=1.4e-12 Score=80.53 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=55.7
Q ss_pred CceeEEecCCcEEEEEEE-eecCCCeeEEEeCCEEec--cCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 17 LRNVSVKLRQSLRLVCRC-KGNPLPAVSWFKDNVEIT--TNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~~-~g~p~p~i~W~~~g~~l~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
.....+.+|+.+.|.|.. .|.|.+.+.|++++.++. .+.+. .....++.|.|.++..+|+|.|.|.|.|.
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~--~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRR--FVSQTNGNLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCe--EEeCCCCcEEEeecCHhhCceeEEEEEec
Confidence 345678999999999974 778999999999987642 22322 22245789999999999999999999998
No 101
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.38 E-value=3.2e-11 Score=72.51 Aligned_cols=82 Identities=28% Similarity=0.574 Sum_probs=64.5
Q ss_pred ceeEEecCCcEEEEEEEeecCCCeeEEEeC-CEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEE
Q psy8425 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKD-NVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSA 95 (176)
Q Consensus 18 ~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~ 95 (176)
..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.+++..|+|.|.|.+.+. +.....
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~- 80 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST- 80 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE-
Confidence 356778999999999999888889999998 88776555555544344578999999999999999999987 554444
Q ss_pred EEEEEE
Q psy8425 96 FAEVSI 101 (176)
Q Consensus 96 ~~~l~V 101 (176)
+.|.|
T Consensus 81 -~~l~V 85 (86)
T smart00410 81 -TTLTV 85 (86)
T ss_pred -EEEEE
Confidence 55554
No 102
>smart00409 IG Immunoglobulin.
Probab=99.38 E-value=3.2e-11 Score=72.51 Aligned_cols=82 Identities=28% Similarity=0.574 Sum_probs=64.5
Q ss_pred ceeEEecCCcEEEEEEEeecCCCeeEEEeC-CEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEE
Q psy8425 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKD-NVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSA 95 (176)
Q Consensus 18 ~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~ 95 (176)
..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.+++..|+|.|.|.+.+. +.....
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~- 80 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST- 80 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE-
Confidence 356778999999999999888889999998 88776555555544344578999999999999999999987 554444
Q ss_pred EEEEEE
Q psy8425 96 FAEVSI 101 (176)
Q Consensus 96 ~~~l~V 101 (176)
+.|.|
T Consensus 81 -~~l~V 85 (86)
T smart00409 81 -TTLTV 85 (86)
T ss_pred -EEEEE
Confidence 55554
No 103
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.37 E-value=1.7e-11 Score=73.35 Aligned_cols=80 Identities=31% Similarity=0.606 Sum_probs=58.9
Q ss_pred CCeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcCC
Q psy8425 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVH 89 (176)
Q Consensus 10 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~g 89 (176)
+|.+...+ ..+.+|+.+.|.|.+.+.|.+.+.|++++..+.... + .+.+.++..+|+|.|.|.+.+..
T Consensus 1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~---------~-~~~~~~~~~~~~g~y~C~~~~~~ 68 (80)
T PF13895_consen 1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ---------N-GLFIPNVSPEDSGNYTCRASNGS 68 (80)
T ss_dssp --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES---------S-EEEESSEEGGGTEEEEEEEEETT
T ss_pred CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee---------e-eeeeeeeccccCEEEEEEEEeCC
Confidence 35555444 558899999999999999889999999987776421 1 27788999999999999999973
Q ss_pred CceEEEEEEEEE
Q psy8425 90 KDVVSAFAEVSI 101 (176)
Q Consensus 90 ~~~~s~~~~l~V 101 (176)
....+..+.|.|
T Consensus 69 ~~~~s~~~~v~V 80 (80)
T PF13895_consen 69 GSNTSTSVNVTV 80 (80)
T ss_dssp EEEEEEEEEEEE
T ss_pred CCeEeeeEEeeC
Confidence 233342255554
No 104
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.36 E-value=6.2e-12 Score=77.45 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=56.1
Q ss_pred eeEEecCCcEEEEEEEeecCCCeeEEEeC--CEEec----cCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC--CC
Q psy8425 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKD--NVEIT----TNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV--HK 90 (176)
Q Consensus 19 ~~~v~~G~~~~l~C~~~g~p~p~i~W~~~--g~~l~----~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~--g~ 90 (176)
.+.+.+|+++.|.|.. +.|.|.+.|++. +.... ...++. ...+.|.|.+++.+|+|.|.|.+.+. +.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~----~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLI----HTERGLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEE----EecCeEEEeeCChhHCEEEEEEEEccCCeE
Confidence 4568899999999996 578899999983 22211 122222 23356999999999999999999865 44
Q ss_pred ceEEEEEEEEEec
Q psy8425 91 DVVSAFAEVSINL 103 (176)
Q Consensus 91 ~~~s~~~~l~V~~ 103 (176)
.... ++|.|..
T Consensus 80 ~~~~--~~l~v~~ 90 (91)
T cd05871 80 TLAK--YTLHVIE 90 (91)
T ss_pred EEEE--EEEEEec
Confidence 4444 8888764
No 105
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.35 E-value=7.7e-12 Score=94.33 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=56.3
Q ss_pred CceeEEecCCcEEEEEE-----EeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CC
Q psy8425 17 LRNVSVKLRQSLRLVCR-----CKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HK 90 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~-----~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~ 90 (176)
+....+.+|..+.|.|. ..+.|.|.++|+++.. +. ..++.. ..++.|.|.+++.+|+|.|+|.+.|. +.
T Consensus 128 ~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~-~~r~~~---~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 202 (326)
T PHA02785 128 SYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR-NKRLKQ---RTPGIITIEDVRKNDAGYYTCVLKYIYGD 202 (326)
T ss_pred eccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC-CcceEe---cCCCeEEEeecChhhCeEEEEEEEeccCC
Confidence 33455778999999997 2467889999998653 22 233222 23468999999999999999999998 55
Q ss_pred ceEE--EEEEEEEe
Q psy8425 91 DVVS--AFAEVSIN 102 (176)
Q Consensus 91 ~~~s--~~~~l~V~ 102 (176)
.... ..+.|.|.
T Consensus 203 ~~~~~t~~v~l~V~ 216 (326)
T PHA02785 203 KTYNVTRIVKLEVR 216 (326)
T ss_pred EEEeEEEEEEEEEe
Confidence 4322 12455554
No 106
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.33 E-value=2.7e-11 Score=86.69 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=56.8
Q ss_pred ceeEEecCCcEEEEEEEee-----cCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 18 RNVSVKLRQSLRLVCRCKG-----NPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 18 ~~~~v~~G~~~~l~C~~~g-----~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
.+..+.+|+++.|.|.+.+ .|.|+++|+|+|.++..+.++.+. ..+.+|.|.+++.+|+|.|+|.|...
T Consensus 137 ~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~--~~~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 137 INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLR--NNNSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEe--CCCCEEEECcCCHHhCEEEEEEEEEe
Confidence 3456788999999999863 457899999999998766655433 45568999999999999999999986
No 107
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.32 E-value=1.3e-11 Score=70.08 Aligned_cols=61 Identities=31% Similarity=0.660 Sum_probs=50.5
Q ss_pred cCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 24 LRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 24 ~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
+|+++.|.|.+.+.|.+.+.|++++..+.. ... .......|.|.++...|+|.|.|.+.|.
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 61 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNR--LSASGSTLTIKSVSLEDSGEYTCVAENS 61 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCE--EecCCcEEEEeeCCcccCEEEEEEEecC
Confidence 488999999998889999999999988762 111 2245568999999999999999999886
No 108
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.30 E-value=1.6e-11 Score=75.87 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=52.2
Q ss_pred eEEecCCcEEEEEEEeecCCCeeEEEeCCEEecc--------------CcceEEEE---ecceEEEEEcccCCCCCEEEE
Q psy8425 20 VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITT--------------NKRLKIQF---KKKRSTLIITRIRSEDAGRYE 82 (176)
Q Consensus 20 ~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~--------------~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~ 82 (176)
+.+.+|++|+|.|.+.+.+.+.+.|+++++.... ..++.... .....+|.|.+++.+|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 4578899999999999999999999976633211 12222222 234467999999999999999
Q ss_pred EEEEcC
Q psy8425 83 CRGTGV 88 (176)
Q Consensus 83 C~a~n~ 88 (176)
|.+.|.
T Consensus 82 C~v~~~ 87 (94)
T cd07690 82 CEVEDK 87 (94)
T ss_pred EEECCc
Confidence 999987
No 109
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.30 E-value=1e-11 Score=76.50 Aligned_cols=69 Identities=20% Similarity=0.391 Sum_probs=56.6
Q ss_pred CceeEEecCCcEEEEEE-EeecCCCeeEEEeCCEEe-ccCcceEEEEecceEEEEEcccCCCCCE-EEEEEEEcC
Q psy8425 17 LRNVSVKLRQSLRLVCR-CKGNPLPAVSWFKDNVEI-TTNKRLKIQFKKKRSTLIITRIRSEDAG-RYECRGTGV 88 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~-~~g~p~p~i~W~~~g~~l-~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~ 88 (176)
.+.+.+.+|+.+.|.|. ..|.|.|.+.|++++... ..+.| +.. ..++.|.|.++..+|+| .|.|.|.|.
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~R--i~~-~~~GnL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDER--VSM-GQNGNLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccccccc--EEE-CCCceEEEEEEehhhCCCCeEEEEEcc
Confidence 46788999999999997 699999999999876543 33333 333 45589999999999999 799999998
No 110
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.30 E-value=1.1e-10 Score=72.14 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=58.0
Q ss_pred CceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEe--------ccCcceEEEE-ecceEEEEEcccCCCCCEEEEEEEEc
Q psy8425 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEI--------TTNKRLKIQF-KKKRSTLIITRIRSEDAGRYECRGTG 87 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l--------~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n 87 (176)
.+++.+.+|+++.|.|.+.+.....+.|++-+..+ ..++|+.... .....+|.|.+++.+|+|.|.|.+..
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 35688999999999999998876777887755332 2446666543 24566899999999999999999987
Q ss_pred CCCceEE
Q psy8425 88 VHKDVVS 94 (176)
Q Consensus 88 ~g~~~~s 94 (176)
.......
T Consensus 84 ~p~~~~~ 90 (95)
T cd05881 84 DPPQEAY 90 (95)
T ss_pred ccCeEEE
Confidence 6433333
No 111
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.23 E-value=5.7e-11 Score=68.21 Aligned_cols=61 Identities=26% Similarity=0.505 Sum_probs=45.0
Q ss_pred CCcEEEEEEE-eecCCCeeEEEeCCEEeccCcceEEEEecce--EEEEEcccCCCCCEEEEEEE
Q psy8425 25 RQSLRLVCRC-KGNPLPAVSWFKDNVEITTNKRLKIQFKKKR--STLIITRIRSEDAGRYECRG 85 (176)
Q Consensus 25 G~~~~l~C~~-~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a 85 (176)
|+++.|.|.+ .+.+.+.+.|++++..+.............. ..|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 6777789999999876654332222211111 13999999999999999986
No 112
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.23 E-value=4.3e-10 Score=69.69 Aligned_cols=83 Identities=20% Similarity=0.349 Sum_probs=65.1
Q ss_pred ceeEEecCCcEEEEEEEeecCCCe-eEEEeCCEEeccCcceEEEEe-----cceEEEEEcccCCCCCEEEEEEEEcC-CC
Q psy8425 18 RNVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFK-----KKRSTLIITRIRSEDAGRYECRGTGV-HK 90 (176)
Q Consensus 18 ~~~~v~~G~~~~l~C~~~g~p~p~-i~W~~~g~~l~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~ 90 (176)
..+.+.+|+++.|.|.+.+.|.|. +.|.+++..+.......+... ...+.|+|..++.+|.|.|+|.|.|. ..
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 456899999999999999999997 999999887654333122221 13478999999999999999999999 77
Q ss_pred ceEEEEEEEEEe
Q psy8425 91 DVVSAFAEVSIN 102 (176)
Q Consensus 91 ~~~s~~~~l~V~ 102 (176)
...+ +.|.|+
T Consensus 91 ~s~t--F~l~v~ 100 (101)
T cd05860 91 ASVT--FNVYVN 100 (101)
T ss_pred EEEE--EEEEEe
Confidence 6666 666664
No 113
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.22 E-value=1.2e-10 Score=70.97 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=54.0
Q ss_pred CCcEEEEEEEeecCCC--eeEEEeCCEEeccC---c--ceEE-EEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEE
Q psy8425 25 RQSLRLVCRCKGNPLP--AVSWFKDNVEITTN---K--RLKI-QFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSA 95 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p--~i~W~~~g~~l~~~---~--~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~ 95 (176)
|+++.|.|.+.+.+.+ .+.|...+...... . +... ......++|.|.+++.+|+|.|+|.|.|. +....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~- 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS- 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEeccc-
Confidence 7899999999887655 67998877543210 1 1000 00124578999999999999999999998 666666
Q ss_pred EEEEEEe
Q psy8425 96 FAEVSIN 102 (176)
Q Consensus 96 ~~~l~V~ 102 (176)
..|.|.
T Consensus 80 -t~~~V~ 85 (86)
T cd05862 80 -TIVIVH 85 (86)
T ss_pred -EEEEEe
Confidence 777765
No 114
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.21 E-value=1.8e-10 Score=71.17 Aligned_cols=72 Identities=21% Similarity=0.308 Sum_probs=53.5
Q ss_pred eEEecCCcEEEEEEE-e----ecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCce
Q psy8425 20 VSVKLRQSLRLVCRC-K----GNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDV 92 (176)
Q Consensus 20 ~~v~~G~~~~l~C~~-~----g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~ 92 (176)
+.+..|.+..|.|.- . ..+.|.+.||||+.++....+..... .....|.|.++..+|+|.|+|.+.+. ++..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~-~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSL-KGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEec-CCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 456778999999962 2 34667999999999887543221111 23457999999999999999999998 5543
No 115
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.14 E-value=5e-10 Score=67.70 Aligned_cols=72 Identities=18% Similarity=0.365 Sum_probs=56.2
Q ss_pred ceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcCCCceEE
Q psy8425 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVHKDVVS 94 (176)
Q Consensus 18 ~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~s 94 (176)
+..++..|+++.|.|...+. .+.+.|+++|..+..+.++.. ....|.|..++.+|+|.|.|.+.-.|-...-
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~----~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~ 75 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRV----GTDGLLILVTSPEHSGTYRCYSEEEGFQQLV 75 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEE----eCCCCEEEECCHhhCEEEEEEEecCCCeEEE
Confidence 46789999999999998765 569999999999877554433 2334889999999999999998855444333
No 116
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.12 E-value=1e-09 Score=66.17 Aligned_cols=61 Identities=28% Similarity=0.523 Sum_probs=44.2
Q ss_pred EEEEEEEee-cCCCeeEEEeCCEEeccCcceEEEEe-----cceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 28 LRLVCRCKG-NPLPAVSWFKDNVEITTNKRLKIQFK-----KKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 28 ~~l~C~~~g-~p~p~i~W~~~g~~l~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
+.|.|.+.| .|.+.+.|+++|+++........... ...+.|.+.....+|.|.|+|.|.|.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~ 68 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNE 68 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCc
Confidence 679999987 68889999999998764321111111 12346778777778889999999998
No 117
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=99.11 E-value=5.4e-10 Score=68.83 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=59.4
Q ss_pred CCeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-
Q psy8425 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV- 88 (176)
Q Consensus 10 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~- 88 (176)
+|.+...+. ..+..|++|+|.|... .+...+.|+|+|...... . .........+.|.+++.+|+|.|+|...+.
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~ 76 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYRSGV 76 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEECCC
Confidence 355555443 4688999999999875 566788999998754321 1 111134568999999999999999999886
Q ss_pred -CCceEEEEEEEEE
Q psy8425 89 -HKDVVSAFAEVSI 101 (176)
Q Consensus 89 -g~~~~s~~~~l~V 101 (176)
+....+.++.|.|
T Consensus 77 ~~~S~~Sd~lel~V 90 (91)
T cd05751 77 ALWSEPSDPLELVV 90 (91)
T ss_pred CccCCCCCcEEEEe
Confidence 2233343344444
No 118
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.10 E-value=9.9e-10 Score=65.54 Aligned_cols=61 Identities=16% Similarity=0.365 Sum_probs=46.2
Q ss_pred EEEEEEE-eecCCCeeEEEeCCEEeccCcceE--EEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 28 LRLVCRC-KGNPLPAVSWFKDNVEITTNKRLK--IQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 28 ~~l~C~~-~g~p~p~i~W~~~g~~l~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
+.|+|.. .|+|.+.++|||+++++....... -......++|.+.....+|.+.|+|.|.|.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~ 65 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHP 65 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEECh
Confidence 6899996 567899999999999996532100 000023467999999999999999999998
No 119
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=99.09 E-value=6e-10 Score=65.57 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=51.0
Q ss_pred CCeEEeCCceeEEecCCcEEEEEEEeecC-CCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEc
Q psy8425 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNP-LPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTG 87 (176)
Q Consensus 10 ~p~~~~~~~~~~v~~G~~~~l~C~~~g~p-~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 87 (176)
+|.+...+.......+. +.|.|.+.+.+ .+.+.|+ +....... .........+.|.|.++..+|.|.|+|.|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~--~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNS--NSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEE--EEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceee--eeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 46666666655444444 99999999888 7789999 11111110 0111124567899999999999999999986
No 120
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.09 E-value=1.2e-09 Score=69.48 Aligned_cols=74 Identities=18% Similarity=0.333 Sum_probs=55.8
Q ss_pred eCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCE---Ee-----------ccCcceEEEEe--cceEEEEEcccCCCCC
Q psy8425 15 SGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNV---EI-----------TTNKRLKIQFK--KKRSTLIITRIRSEDA 78 (176)
Q Consensus 15 ~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~---~l-----------~~~~~~~~~~~--~~~~~L~i~~v~~~d~ 78 (176)
..+..+.+.+|+++.|.|.+.+.+.+.+.|++... +. ....++.+... ....+|.|.+++.+|+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence 45667889999999999999887778999998431 10 01234444332 3567899999999999
Q ss_pred EEEEEEEEcC
Q psy8425 79 GRYECRGTGV 88 (176)
Q Consensus 79 G~Y~C~a~n~ 88 (176)
|.|.|.+.+.
T Consensus 83 G~Y~C~~~~~ 92 (109)
T cd04983 83 AVYFCALSES 92 (109)
T ss_pred EEEEEEEecC
Confidence 9999999876
No 121
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=99.08 E-value=3.1e-09 Score=68.22 Aligned_cols=73 Identities=15% Similarity=0.343 Sum_probs=51.0
Q ss_pred CCceeEEecCCcEEEEEEEeecC----CCeeEE---------------EeCCEEec-cCcce--EEEE----ecceEEEE
Q psy8425 16 GLRNVSVKLRQSLRLVCRCKGNP----LPAVSW---------------FKDNVEIT-TNKRL--KIQF----KKKRSTLI 69 (176)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~~~g~p----~p~i~W---------------~~~g~~l~-~~~~~--~~~~----~~~~~~L~ 69 (176)
.+..+.+..|+++.|.|...... ...+.| +++|.... ....+ ++.+ .....+|.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 34567889999999999986532 347999 33444432 11111 2221 14567899
Q ss_pred EcccCCCCCEEEEEEEEcC
Q psy8425 70 ITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 70 i~~v~~~d~G~Y~C~a~n~ 88 (176)
|.+++.+|+|.|+|.+.|.
T Consensus 84 I~nv~~sD~G~Y~C~v~n~ 102 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNP 102 (116)
T ss_pred EccCCcccCEEEEEEEEcC
Confidence 9999999999999999998
No 122
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.07 E-value=9.5e-10 Score=68.37 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=53.4
Q ss_pred ceeEEecCCcEEEEEEEe-----------ecCCCeeEEEeCCEEeccCcce---EEEEecceEEEEEcccCCCCCEEEEE
Q psy8425 18 RNVSVKLRQSLRLVCRCK-----------GNPLPAVSWFKDNVEITTNKRL---KIQFKKKRSTLIITRIRSEDAGRYEC 83 (176)
Q Consensus 18 ~~~~v~~G~~~~l~C~~~-----------g~p~p~i~W~~~g~~l~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C 83 (176)
....+.+|+.+.|.|... ......+.|+|++..+...... ..+.......|.|..+..+|+|.|+|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTC 87 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEE
Confidence 346788999999999861 1123379999997555432210 01222456789999999999999999
Q ss_pred EEEcC-CCceEE
Q psy8425 84 RGTGV-HKDVVS 94 (176)
Q Consensus 84 ~a~n~-g~~~~s 94 (176)
.+.|. .....+
T Consensus 88 ~~rN~t~C~~~~ 99 (104)
T cd05896 88 VLRNSTYCMKVS 99 (104)
T ss_pred EECCCCcceEEE
Confidence 99998 444444
No 123
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=99.02 E-value=5.2e-09 Score=66.25 Aligned_cols=76 Identities=22% Similarity=0.356 Sum_probs=54.0
Q ss_pred EEeCCceeEEecCCcEEEEEEEeecC-CCeeEEEeCC--E---Eec---------cCcceEEEEecceEEEEEcccCCCC
Q psy8425 13 EVSGLRNVSVKLRQSLRLVCRCKGNP-LPAVSWFKDN--V---EIT---------TNKRLKIQFKKKRSTLIITRIRSED 77 (176)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~~~g~p-~p~i~W~~~g--~---~l~---------~~~~~~~~~~~~~~~L~i~~v~~~d 77 (176)
+...|..+.+.+|++++|.|.+.+.. ...+.|||.. . .+. ...++..........|.|.+++.+|
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 34566778899999999999987665 5679999832 1 111 0123433322345679999999999
Q ss_pred CEEEEEEEEcC
Q psy8425 78 AGRYECRGTGV 88 (176)
Q Consensus 78 ~G~Y~C~a~n~ 88 (176)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999998754
No 124
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.01 E-value=2.6e-09 Score=68.08 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=53.4
Q ss_pred eCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCE--Eec----------------cCcceEEEEe-cceEEEEEcccCC
Q psy8425 15 SGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNV--EIT----------------TNKRLKIQFK-KKRSTLIITRIRS 75 (176)
Q Consensus 15 ~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~--~l~----------------~~~~~~~~~~-~~~~~L~i~~v~~ 75 (176)
+.+..+.+.+|++++|.|...+ +.+.+.|||... .+. ...++.+... ....+|.|.+++.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 4566788999999999999987 677899998431 110 0123333222 2456899999999
Q ss_pred CCCEEEEEEEEcC
Q psy8425 76 EDAGRYECRGTGV 88 (176)
Q Consensus 76 ~d~G~Y~C~a~n~ 88 (176)
+|+|.|.|.+.+.
T Consensus 82 ~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 82 EDSAVYLCASSLG 94 (110)
T ss_pred hhCEEEEEEeeCC
Confidence 9999999998865
No 125
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.97 E-value=6.2e-09 Score=65.61 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=49.9
Q ss_pred EEecCCcEEEEEEEeec-CCCeeEEEeCCE-----Eec------------cCcceEEEEec--ceEEEEEcccCCCCCEE
Q psy8425 21 SVKLRQSLRLVCRCKGN-PLPAVSWFKDNV-----EIT------------TNKRLKIQFKK--KRSTLIITRIRSEDAGR 80 (176)
Q Consensus 21 ~v~~G~~~~l~C~~~g~-p~p~i~W~~~g~-----~l~------------~~~~~~~~~~~--~~~~L~i~~v~~~d~G~ 80 (176)
.+.+|++++|.|..... +...+.|++... .+. ...++.+.... ...+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 57899999999999876 666899998432 110 11233333222 45689999999999999
Q ss_pred EEEEEEcC
Q psy8425 81 YECRGTGV 88 (176)
Q Consensus 81 Y~C~a~n~ 88 (176)
|.|.+.+.
T Consensus 82 Y~C~v~~~ 89 (105)
T cd00099 82 YYCAVSLS 89 (105)
T ss_pred EEEEEecC
Confidence 99999987
No 126
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.95 E-value=1.5e-08 Score=64.18 Aligned_cols=78 Identities=24% Similarity=0.462 Sum_probs=52.9
Q ss_pred cCCcEEEEEEEeecC------CCeeEEEeCC-----E-Eec--cC------cce--EEEE---ecceEEEEEcccCCCCC
Q psy8425 24 LRQSLRLVCRCKGNP------LPAVSWFKDN-----V-EIT--TN------KRL--KIQF---KKKRSTLIITRIRSEDA 78 (176)
Q Consensus 24 ~G~~~~l~C~~~g~p------~p~i~W~~~g-----~-~l~--~~------~~~--~~~~---~~~~~~L~i~~v~~~d~ 78 (176)
.|++++|.|.....+ .+.+.|++.. . .+. .+ .++ ++.. .....+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987653 4589999862 1 110 11 111 1111 13567899999999999
Q ss_pred EEEEEEEEcC-CCceEEEEEEEEEec
Q psy8425 79 GRYECRGTGV-HKDVVSAFAEVSINL 103 (176)
Q Consensus 79 G~Y~C~a~n~-g~~~~s~~~~l~V~~ 103 (176)
|.|.|.+.+. +..... +.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~--v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDT--VELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEE--EEEEEEE
Confidence 9999999987 544444 7777753
No 127
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.94 E-value=1.7e-08 Score=64.89 Aligned_cols=73 Identities=16% Similarity=0.424 Sum_probs=49.6
Q ss_pred CCceeEEecCCcEEEEEEEeecC----CCeeEEEeC----CEE--ec---------cCcce--EEEE----ecceEEEEE
Q psy8425 16 GLRNVSVKLRQSLRLVCRCKGNP----LPAVSWFKD----NVE--IT---------TNKRL--KIQF----KKKRSTLII 70 (176)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~~~g~p----~p~i~W~~~----g~~--l~---------~~~~~--~~~~----~~~~~~L~i 70 (176)
.+..+.+.+|++++|.|.....+ ...+.|++. +.+ +. ...++ ++.+ .....+|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 45678899999999999976443 235999741 221 10 11122 1111 134578999
Q ss_pred cccCCCCCEEEEEEEEcC
Q psy8425 71 TRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 71 ~~v~~~d~G~Y~C~a~n~ 88 (176)
.+++.+|+|.|.|.+.|.
T Consensus 84 ~~v~~~D~G~Y~C~v~~~ 101 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNP 101 (115)
T ss_pred eeCChhhCEEEEEEEEeC
Confidence 999999999999999987
No 128
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.92 E-value=1.2e-08 Score=64.32 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=49.2
Q ss_pred eeEEecCCcEEEEEEEeecCCCeeEEEeCCE-----Ee---cc-----------CcceEEEEecceEEEEEcccCCCCCE
Q psy8425 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNV-----EI---TT-----------NKRLKIQFKKKRSTLIITRIRSEDAG 79 (176)
Q Consensus 19 ~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~-----~l---~~-----------~~~~~~~~~~~~~~L~i~~v~~~d~G 79 (176)
...+.+|+++.|.|.........+.|+|+.. .+ .. ..|.. . ..+++|.|.+++..|+|
T Consensus 7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~--~-~~ngSL~I~~v~~~D~G 83 (105)
T cd05774 7 PPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRET--I-YPNGSLLIQNVTQKDTG 83 (105)
T ss_pred CCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEE--E-eCCCcEEEecCCcccCE
Confidence 3457899999999875433333899999532 11 01 11111 1 34679999999999999
Q ss_pred EEEEEEEcCCCceEE
Q psy8425 80 RYECRGTGVHKDVVS 94 (176)
Q Consensus 80 ~Y~C~a~n~g~~~~s 94 (176)
.|.|.+.+.......
T Consensus 84 ~Y~~~v~~~~~~~~~ 98 (105)
T cd05774 84 FYTLQTITTNFQVEQ 98 (105)
T ss_pred EEEEEEEeCCccEEE
Confidence 999999998433333
No 129
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.91 E-value=1.2e-08 Score=65.57 Aligned_cols=73 Identities=18% Similarity=0.391 Sum_probs=53.9
Q ss_pred CCceeEEecCCcEEEEEEEee--cCCCeeEEEeC--CEEe------c-----------cCcceEEEEec--ceEEEEEcc
Q psy8425 16 GLRNVSVKLRQSLRLVCRCKG--NPLPAVSWFKD--NVEI------T-----------TNKRLKIQFKK--KRSTLIITR 72 (176)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~~~g--~p~p~i~W~~~--g~~l------~-----------~~~~~~~~~~~--~~~~L~i~~ 72 (176)
.+..+.+.+|++++|.|...+ .+.+.+.|||. +... . ...++.+.... ....|.|.+
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 83 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN 83 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence 456678899999999999877 67778999984 2111 0 12344444433 567899999
Q ss_pred cCCCCCEEEEEEEEcC
Q psy8425 73 IRSEDAGRYECRGTGV 88 (176)
Q Consensus 73 v~~~d~G~Y~C~a~n~ 88 (176)
++.+|+|.|.|.+...
T Consensus 84 ~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 84 LEKEDSATYYCAYWES 99 (116)
T ss_pred CCHHHCEEEEEEEecC
Confidence 9999999999988754
No 130
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.91 E-value=1.4e-08 Score=63.23 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=52.9
Q ss_pred ecCCcEEEEEEEee-cCCCeeEEEeCCEEecc-------------Ccce--EEEEecceEEEEEcccCCCCCEEEEEEEE
Q psy8425 23 KLRQSLRLVCRCKG-NPLPAVSWFKDNVEITT-------------NKRL--KIQFKKKRSTLIITRIRSEDAGRYECRGT 86 (176)
Q Consensus 23 ~~G~~~~l~C~~~g-~p~p~i~W~~~g~~l~~-------------~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 86 (176)
..|++|+|.|.... .....+.|++....+.. ..++ ++.+.....+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36999999998754 44457899986432211 1122 23333456899999999999999999999
Q ss_pred cCCCceEEEEEEEEE
Q psy8425 87 GVHKDVVSAFAEVSI 101 (176)
Q Consensus 87 n~g~~~~s~~~~l~V 101 (176)
+..+......+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 884444442355554
No 131
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.89 E-value=3e-08 Score=63.23 Aligned_cols=77 Identities=27% Similarity=0.411 Sum_probs=51.5
Q ss_pred cCCcEEEEEEEeecC------------CCeeEEEeC--CE---Eec-c------C----cceEEEE---ecceEEEEEcc
Q psy8425 24 LRQSLRLVCRCKGNP------------LPAVSWFKD--NV---EIT-T------N----KRLKIQF---KKKRSTLIITR 72 (176)
Q Consensus 24 ~G~~~~l~C~~~g~p------------~p~i~W~~~--g~---~l~-~------~----~~~~~~~---~~~~~~L~i~~ 72 (176)
.|++++|.|...... .+.+.|+|. |. .+. . . .|+.+.. .....+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999986432 358999983 21 111 0 1 2222221 13578999999
Q ss_pred cCCCCCEEEEEEEEcC-CCceEEEEEEEEEe
Q psy8425 73 IRSEDAGRYECRGTGV-HKDVVSAFAEVSIN 102 (176)
Q Consensus 73 v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V~ 102 (176)
++.+|+|.|.|.+.+. ...... +.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~--v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDT--VEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeE--EEEEEE
Confidence 9999999999999976 555544 666664
No 132
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.88 E-value=1.4e-08 Score=62.45 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=47.7
Q ss_pred CCcEEEEEEEeecCCCeeEEEeCCEEecc--------------Ccce--EEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFKDNVEITT--------------NKRL--KIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~~g~~l~~--------------~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
|++|+|.|.........+.|+++...... ..++ ++.. ..+.+|.|.+++.+|+|.|.|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~-~~~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETI-YPNGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEE-cCCceEEEccCCchhcEEEEEEEEcC
Confidence 78999999887656668999986532110 0111 1222 34488999999999999999999988
Q ss_pred CCceEE
Q psy8425 89 HKDVVS 94 (176)
Q Consensus 89 g~~~~s 94 (176)
......
T Consensus 80 ~~~~~~ 85 (92)
T cd05741 80 NGVTEN 85 (92)
T ss_pred CCcEEE
Confidence 433333
No 133
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.88 E-value=3e-08 Score=62.00 Aligned_cols=75 Identities=19% Similarity=0.334 Sum_probs=46.6
Q ss_pred CCcEEEEEEEeecCC---CeeEEEeCC--EEe---------cc------CcceEEEEe---cceEEEEEcccCCCCCEEE
Q psy8425 25 RQSLRLVCRCKGNPL---PAVSWFKDN--VEI---------TT------NKRLKIQFK---KKRSTLIITRIRSEDAGRY 81 (176)
Q Consensus 25 G~~~~l~C~~~g~p~---p~i~W~~~g--~~l---------~~------~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y 81 (176)
|+++.|.|....... ..+.|++.. ..+ .. ..|..+... ....+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 788999998753221 257787743 111 10 012222111 2346899999999999999
Q ss_pred EEEEEcC-CCceEEEEEEEEE
Q psy8425 82 ECRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 82 ~C~a~n~-g~~~~s~~~~l~V 101 (176)
+|.+.+. +..... +.|.|
T Consensus 81 ~C~v~~~~~~~~~~--i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEAT--VELKV 99 (100)
T ss_pred EEEEecCCcEEEEE--EEEEE
Confidence 9999987 543333 55554
No 134
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.88 E-value=4.1e-08 Score=63.20 Aligned_cols=73 Identities=22% Similarity=0.408 Sum_probs=49.1
Q ss_pred CCceeEEecCCcEEEEEEEeecC----CCeeEEEeCCE------Eec----------cCcceE--EEEe----cceEEEE
Q psy8425 16 GLRNVSVKLRQSLRLVCRCKGNP----LPAVSWFKDNV------EIT----------TNKRLK--IQFK----KKRSTLI 69 (176)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~~~g~p----~p~i~W~~~g~------~l~----------~~~~~~--~~~~----~~~~~L~ 69 (176)
.|..+.+.+|++++|.|...... ...+.|++... .+. ...++. +.+. ....+|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 35667889999999999886432 24689976211 110 011221 1111 2347899
Q ss_pred EcccCCCCCEEEEEEEEcC
Q psy8425 70 ITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 70 i~~v~~~d~G~Y~C~a~n~ 88 (176)
|.+++.+|+|.|.|.+.|.
T Consensus 84 I~~v~~~D~G~Y~C~v~~~ 102 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNP 102 (116)
T ss_pred EeeCCcccCEEEEEEEEeC
Confidence 9999999999999999987
No 135
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.86 E-value=3.8e-08 Score=61.27 Aligned_cols=74 Identities=22% Similarity=0.392 Sum_probs=48.5
Q ss_pred CcEEEEEEEeecC---CCeeEEEeCCEE----e-----------ccCcceEEEEec---ceEEEEEcccCCCCCEEEEEE
Q psy8425 26 QSLRLVCRCKGNP---LPAVSWFKDNVE----I-----------TTNKRLKIQFKK---KRSTLIITRIRSEDAGRYECR 84 (176)
Q Consensus 26 ~~~~l~C~~~g~p---~p~i~W~~~g~~----l-----------~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~ 84 (176)
++++|.|.....+ ...+.|+|.... + ....+.++.+.. ...+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999987654 337999995421 0 111112222222 467999999999999999999
Q ss_pred EEcC--CCceEEEEEEEEE
Q psy8425 85 GTGV--HKDVVSAFAEVSI 101 (176)
Q Consensus 85 a~n~--g~~~~s~~~~l~V 101 (176)
+... |..... +.|.|
T Consensus 81 v~~~~~g~~~~~--~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKV--TTLTV 97 (98)
T ss_pred EEeCCCCcEEEE--EEEEe
Confidence 8764 555544 66665
No 136
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.84 E-value=4.4e-08 Score=61.09 Aligned_cols=68 Identities=18% Similarity=0.323 Sum_probs=49.1
Q ss_pred EEecCCcEEEEEEEeec--CCCeeEEEeCC--EEec------------cCcceEEEEecceEEEEEcccCCCCCEEEEEE
Q psy8425 21 SVKLRQSLRLVCRCKGN--PLPAVSWFKDN--VEIT------------TNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84 (176)
Q Consensus 21 ~v~~G~~~~l~C~~~g~--p~p~i~W~~~g--~~l~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 84 (176)
.+.+|++++|.|...+. ....+.||+.. .... ...++..........|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 47889999999998765 45679999832 1110 01345444444567899999999999999998
Q ss_pred EEcC
Q psy8425 85 GTGV 88 (176)
Q Consensus 85 a~n~ 88 (176)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8753
No 137
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.82 E-value=1.1e-07 Score=60.19 Aligned_cols=77 Identities=26% Similarity=0.434 Sum_probs=51.3
Q ss_pred cCCcEEEEEEEeecC------CCeeEEEeCCE----E---e-cc----------CcceEEEEe-cceEEEEEcccCCCCC
Q psy8425 24 LRQSLRLVCRCKGNP------LPAVSWFKDNV----E---I-TT----------NKRLKIQFK-KKRSTLIITRIRSEDA 78 (176)
Q Consensus 24 ~G~~~~l~C~~~g~p------~p~i~W~~~g~----~---l-~~----------~~~~~~~~~-~~~~~L~i~~v~~~d~ 78 (176)
.|++++|.|.....| ...+.|+|... . + .. ..|+.+... ....+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987653 34699998531 1 1 10 012222110 2346899999999999
Q ss_pred EEEEEEEEcC-CCceEEEEEEEEEe
Q psy8425 79 GRYECRGTGV-HKDVVSAFAEVSIN 102 (176)
Q Consensus 79 G~Y~C~a~n~-g~~~~s~~~~l~V~ 102 (176)
|.|.|.+.+. +..... +.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~--~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVV--VALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEE--EEEEEE
Confidence 9999999887 655545 777765
No 138
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.81 E-value=9.9e-08 Score=60.79 Aligned_cols=78 Identities=24% Similarity=0.457 Sum_probs=52.2
Q ss_pred cCCcEEEEEEEeecC----------CCeeEEEeC--CEEec----------cCcce--EEEE-----ecceEEEEEcccC
Q psy8425 24 LRQSLRLVCRCKGNP----------LPAVSWFKD--NVEIT----------TNKRL--KIQF-----KKKRSTLIITRIR 74 (176)
Q Consensus 24 ~G~~~~l~C~~~g~p----------~p~i~W~~~--g~~l~----------~~~~~--~~~~-----~~~~~~L~i~~v~ 74 (176)
.|++++|.|.....+ ...+.|+|. +.... ....+ ++.+ .....+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 489999999987644 246899984 22110 01111 1221 1345789999999
Q ss_pred CCCCEEEEEEEEcC-CCceEEEEEEEEEec
Q psy8425 75 SEDAGRYECRGTGV-HKDVVSAFAEVSINL 103 (176)
Q Consensus 75 ~~d~G~Y~C~a~n~-g~~~~s~~~~l~V~~ 103 (176)
.+|+|.|.|.+... ...... +.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~--v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDT--VPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEE--EEEEEEE
Confidence 99999999999987 555555 7777753
No 139
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.80 E-value=3.4e-08 Score=61.16 Aligned_cols=74 Identities=14% Similarity=0.240 Sum_probs=49.6
Q ss_pred CeEEeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEE
Q psy8425 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGT 86 (176)
Q Consensus 11 p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 86 (176)
|.+...+ ...+.+|++|+|.|.... ....+.|+|+|...................+.|..++.+|+|.|.|...
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 4544444 456889999999998754 4457899998865322100000001234578999999999999999975
No 140
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.79 E-value=1.2e-07 Score=56.74 Aligned_cols=74 Identities=18% Similarity=0.333 Sum_probs=50.2
Q ss_pred EEEEEEEee-cCCCeeEEEeCCEEeccCcceEEEE---ecceEEEEEcccCCCCCEEEEEEEEcC--CCceEEEEEEEEE
Q psy8425 28 LRLVCRCKG-NPLPAVSWFKDNVEITTNKRLKIQF---KKKRSTLIITRIRSEDAGRYECRGTGV--HKDVVSAFAEVSI 101 (176)
Q Consensus 28 ~~l~C~~~g-~p~p~i~W~~~g~~l~~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~--g~~~~s~~~~l~V 101 (176)
+.|.|.+.| .|.+.|+||+++.++.......... ....++|.|.....+|...|+|.|.|. .....+ ..|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~--~~L~V 79 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQ--RYLEV 79 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceee--EEEEE
Confidence 679999765 6888999999999987632211011 023467888766666667899999998 333333 77777
Q ss_pred ec
Q psy8425 102 NL 103 (176)
Q Consensus 102 ~~ 103 (176)
++
T Consensus 80 ~y 81 (82)
T cd05883 80 QY 81 (82)
T ss_pred EE
Confidence 64
No 141
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.71 E-value=5.1e-07 Score=57.29 Aligned_cols=74 Identities=20% Similarity=0.386 Sum_probs=52.4
Q ss_pred eCCceeEEecCCcEEEEEEEe-ecCCCeeEEEeCCE-----Eec---c-----------CcceEEEEe--cceEEEEEcc
Q psy8425 15 SGLRNVSVKLRQSLRLVCRCK-GNPLPAVSWFKDNV-----EIT---T-----------NKRLKIQFK--KKRSTLIITR 72 (176)
Q Consensus 15 ~~~~~~~v~~G~~~~l~C~~~-g~p~p~i~W~~~g~-----~l~---~-----------~~~~~~~~~--~~~~~L~i~~ 72 (176)
..+..+.+.+|+++.|.|... ......+.|++... .+. . ..+..+... ....+|.|.+
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~ 85 (114)
T PF07686_consen 6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN 85 (114)
T ss_dssp EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence 346678899999999999988 44556899998321 111 0 122222222 2357899999
Q ss_pred cCCCCCEEEEEEEEcC
Q psy8425 73 IRSEDAGRYECRGTGV 88 (176)
Q Consensus 73 v~~~d~G~Y~C~a~n~ 88 (176)
++.+|+|.|.|.+...
T Consensus 86 l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 86 LQPSDSGTYFCQVSTS 101 (114)
T ss_dssp ESGGGEEEEEEEEEES
T ss_pred CCcCcCEEEEEEEEEC
Confidence 9999999999999886
No 142
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.69 E-value=2e-07 Score=59.89 Aligned_cols=75 Identities=25% Similarity=0.495 Sum_probs=53.2
Q ss_pred EeCCceeEEecCCcEEEEEEEeec-CCCeeEEEeC--CEE---e---------ccCcceEEEE--ecceEEEEEcccCCC
Q psy8425 14 VSGLRNVSVKLRQSLRLVCRCKGN-PLPAVSWFKD--NVE---I---------TTNKRLKIQF--KKKRSTLIITRIRSE 76 (176)
Q Consensus 14 ~~~~~~~~v~~G~~~~l~C~~~g~-p~p~i~W~~~--g~~---l---------~~~~~~~~~~--~~~~~~L~i~~v~~~ 76 (176)
.+.+..+.+.+|++++|.|..... ....+.|+|. +.. + ...+|+.+.. .....+|.|.+++.+
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 345667889999999999997654 4457899983 211 1 0124444432 134578999999999
Q ss_pred CCEEEEEEEEcC
Q psy8425 77 DAGRYECRGTGV 88 (176)
Q Consensus 77 d~G~Y~C~a~n~ 88 (176)
|+|.|.|.+...
T Consensus 83 Dsg~Y~C~~~~~ 94 (116)
T cd07706 83 DSAKYFCALSTL 94 (116)
T ss_pred HCEEEEEEEECC
Confidence 999999998854
No 143
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.69 E-value=3e-07 Score=55.21 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=47.2
Q ss_pred eEEecCCcEEEEEEEeecCCC--eeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 20 VSVKLRQSLRLVCRCKGNPLP--AVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 20 ~~v~~G~~~~l~C~~~g~p~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
-.+..|++++|.|.....+.| .++|+..+....... ..+..+|.+..+...|+|.++|.+...
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~------~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL------NQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceec------cCCccEEEeceeCcccCCEEEEEEEEC
Confidence 357889999999998654555 999997543322100 135568999999999999999999755
No 144
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.69 E-value=3e-07 Score=62.75 Aligned_cols=86 Identities=15% Similarity=0.326 Sum_probs=60.3
Q ss_pred CceeEEecCCcEEEEEEEe-ecCCCeeEEEeCCEEec----------c--CcceE-EEEecceEEEEEcccCCCCCEEEE
Q psy8425 17 LRNVSVKLRQSLRLVCRCK-GNPLPAVSWFKDNVEIT----------T--NKRLK-IQFKKKRSTLIITRIRSEDAGRYE 82 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~~~-g~p~p~i~W~~~g~~l~----------~--~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~ 82 (176)
...+++.+|++++|.|... +...+.+.|+|....+. . .+|.. +.......+|+|.+++.+|+|.|.
T Consensus 22 ~~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~ 101 (189)
T PHA02987 22 FVKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYT 101 (189)
T ss_pred eEEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEE
Confidence 3457899999999999974 55667899998633221 1 12332 222245688999999999999999
Q ss_pred EEEEcC--C-CceEEEEEEEEEecC
Q psy8425 83 CRGTGV--H-KDVVSAFAEVSINLR 104 (176)
Q Consensus 83 C~a~n~--g-~~~~s~~~~l~V~~~ 104 (176)
|...-- | ..... +-|.|...
T Consensus 102 C~F~tfp~G~~~~gt--~CLtVt~~ 124 (189)
T PHA02987 102 CIFNTLLSKNNEKGV--VCLNVTTD 124 (189)
T ss_pred EEEEecCCCCCceeE--EEEEEEch
Confidence 998876 4 33444 77888753
No 145
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.65 E-value=4.1e-07 Score=56.61 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=47.9
Q ss_pred CCcEEEEEEEeecCCC-eeEEEeCCE----Eec---c------Ccce--EEEE---ecceEEEEEcccCCCCCEEEEEEE
Q psy8425 25 RQSLRLVCRCKGNPLP-AVSWFKDNV----EIT---T------NKRL--KIQF---KKKRSTLIITRIRSEDAGRYECRG 85 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p-~i~W~~~g~----~l~---~------~~~~--~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a 85 (176)
|++++|.|........ .+.|+|... .+. . ...+ +... .....+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 7899999986544332 689998421 110 0 0111 1111 134578999999999999999998
Q ss_pred EcC--CCceEEEEEEEEE
Q psy8425 86 TGV--HKDVVSAFAEVSI 101 (176)
Q Consensus 86 ~n~--g~~~~s~~~~l~V 101 (176)
... |..... +.|+|
T Consensus 81 ~~~p~g~~~~~--~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGT--MCLTV 96 (97)
T ss_pred EeCCCCCeeeE--EEEEE
Confidence 876 444434 67766
No 146
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.64 E-value=8.2e-07 Score=56.43 Aligned_cols=77 Identities=21% Similarity=0.444 Sum_probs=49.9
Q ss_pred cCCcEEEEEEEeecC-------CCeeEEEeC-----CEEe----ccC------cce--EEEEe-----cceEEEEEcccC
Q psy8425 24 LRQSLRLVCRCKGNP-------LPAVSWFKD-----NVEI----TTN------KRL--KIQFK-----KKRSTLIITRIR 74 (176)
Q Consensus 24 ~G~~~~l~C~~~g~p-------~p~i~W~~~-----g~~l----~~~------~~~--~~~~~-----~~~~~L~i~~v~ 74 (176)
.|++++|.|...-.| .+.+.|.+. .... ..+ ..+ ++.+. ....+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 378899999965333 358899874 1111 011 111 22221 246799999999
Q ss_pred CCCCEEEEEEEEcC-CCceEEEEEEEEEe
Q psy8425 75 SEDAGRYECRGTGV-HKDVVSAFAEVSIN 102 (176)
Q Consensus 75 ~~d~G~Y~C~a~n~-g~~~~s~~~~l~V~ 102 (176)
.+|+|.|.|.+... ...... +.|.|.
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~--v~L~V~ 107 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDT--VPLEVT 107 (110)
T ss_pred HHHCEEEEEEEEECCcccEEE--EEEEEE
Confidence 99999999999986 444444 777765
No 147
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.62 E-value=5.1e-07 Score=56.20 Aligned_cols=70 Identities=24% Similarity=0.283 Sum_probs=49.1
Q ss_pred eEEecCCcEEEEEEEee-cCCCeeEEEeCCE-----Ee--------ccCcceEEEEe--cceEEEEEcccCCCCCEEEEE
Q psy8425 20 VSVKLRQSLRLVCRCKG-NPLPAVSWFKDNV-----EI--------TTNKRLKIQFK--KKRSTLIITRIRSEDAGRYEC 83 (176)
Q Consensus 20 ~~v~~G~~~~l~C~~~g-~p~p~i~W~~~g~-----~l--------~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C 83 (176)
+.+.+|++++|.|.... .....+.|+|... .+ ....++.+... ....+|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 46789999999998765 3456789998531 11 01233443322 345689999999999999999
Q ss_pred EEEcCC
Q psy8425 84 RGTGVH 89 (176)
Q Consensus 84 ~a~n~g 89 (176)
.+...+
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 888764
No 148
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.57 E-value=1.4e-06 Score=52.61 Aligned_cols=60 Identities=18% Similarity=0.371 Sum_probs=41.2
Q ss_pred EEEEEEEeec-CCCeeEEEeCCEEeccCcceEEEEecc------eEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 28 LRLVCRCKGN-PLPAVSWFKDNVEITTNKRLKIQFKKK------RSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 28 ~~l~C~~~g~-p~p~i~W~~~g~~l~~~~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
+.|.|.+.|. |.+.|+|+++|.++..... .+..... .+.|.+.....+|...|+|.+.+.
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~ 68 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHE 68 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECc
Confidence 5799999774 8889999999998865321 2222112 134555444556678999999998
No 149
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.56 E-value=9.7e-07 Score=55.93 Aligned_cols=67 Identities=25% Similarity=0.557 Sum_probs=45.7
Q ss_pred EEecCCcEEEEEEEeecC-CCeeEEEeCCE-----Ee------cc-----------CcceEEEEe--cceEEEEEcccCC
Q psy8425 21 SVKLRQSLRLVCRCKGNP-LPAVSWFKDNV-----EI------TT-----------NKRLKIQFK--KKRSTLIITRIRS 75 (176)
Q Consensus 21 ~v~~G~~~~l~C~~~g~p-~p~i~W~~~g~-----~l------~~-----------~~~~~~~~~--~~~~~L~i~~v~~ 75 (176)
.+.+|++++|.|...+.. ...+.|||... .+ .. ..++.+... .....|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 578999999999987543 45799998321 10 00 123333222 2345799999999
Q ss_pred CCCEEEEEEEEc
Q psy8425 76 EDAGRYECRGTG 87 (176)
Q Consensus 76 ~d~G~Y~C~a~n 87 (176)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999998764
No 150
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.56 E-value=1.4e-06 Score=52.47 Aligned_cols=60 Identities=28% Similarity=0.489 Sum_probs=40.1
Q ss_pred EEEEEEEeec-CCCeeEEEeCCEEeccCcceEEEEec-----ceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 28 LRLVCRCKGN-PLPAVSWFKDNVEITTNKRLKIQFKK-----KRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 28 ~~l~C~~~g~-p~p~i~W~~~g~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
+.|.|.+.+. |.+.+.|++++.++.... ....... ..+.|.+.....++.+.|+|.+.+.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~ 67 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHP 67 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeCh
Confidence 6899999764 888999999999886432 1111101 1234555444455567999999998
No 151
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.55 E-value=7.1e-07 Score=57.66 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=49.9
Q ss_pred eCCceeEEecCCcEEEEEEEeecC------CCeeEEEeCCE-----E-ec--c---------CcceEEE--EecceEEEE
Q psy8425 15 SGLRNVSVKLRQSLRLVCRCKGNP------LPAVSWFKDNV-----E-IT--T---------NKRLKIQ--FKKKRSTLI 69 (176)
Q Consensus 15 ~~~~~~~v~~G~~~~l~C~~~g~p------~p~i~W~~~g~-----~-l~--~---------~~~~~~~--~~~~~~~L~ 69 (176)
..|+.+.+.+|++++|.|...... ...+.|++... . +. . ..|+.+. ......+|.
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~ 83 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL 83 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence 346678899999999999865322 23588998421 1 10 0 1233331 124457899
Q ss_pred EcccCCCCCEEEEEEEEcC
Q psy8425 70 ITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 70 i~~v~~~d~G~Y~C~a~n~ 88 (176)
|.+++.+|+|.|.|.+...
T Consensus 84 I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 84 ISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EccCChhhCeEEEEEEEcC
Confidence 9999999999999988664
No 152
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.55 E-value=1.2e-06 Score=54.19 Aligned_cols=74 Identities=22% Similarity=0.452 Sum_probs=47.7
Q ss_pred CcEEEEEEEeecC-CCeeEEEeCC----EEec-----------c--CcceEEE-EecceEEEEEcccCCCCCEEEEEEEE
Q psy8425 26 QSLRLVCRCKGNP-LPAVSWFKDN----VEIT-----------T--NKRLKIQ-FKKKRSTLIITRIRSEDAGRYECRGT 86 (176)
Q Consensus 26 ~~~~l~C~~~g~p-~p~i~W~~~g----~~l~-----------~--~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~ 86 (176)
++++|.|.....+ ...+.|.|.. ..+. . ..|..+. ......+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 4688999976432 2378898731 1111 0 0122221 11346799999999999999999987
Q ss_pred cC--CCceEEEEEEEEE
Q psy8425 87 GV--HKDVVSAFAEVSI 101 (176)
Q Consensus 87 n~--g~~~~s~~~~l~V 101 (176)
+. |....+ ..|.|
T Consensus 81 tfP~G~~~~~--~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSS--TTVTV 95 (96)
T ss_pred eCCCCCeeEE--EEEEE
Confidence 76 666666 77776
No 153
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.52 E-value=4.3e-07 Score=56.08 Aligned_cols=66 Identities=24% Similarity=0.337 Sum_probs=46.7
Q ss_pred ecCCcEEEEEEEeec-CC-CeeEEEeCCEEeccCcc-eEEEEe-----cceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 23 KLRQSLRLVCRCKGN-PL-PAVSWFKDNVEITTNKR-LKIQFK-----KKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 23 ~~G~~~~l~C~~~g~-p~-p~i~W~~~g~~l~~~~~-~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
..|+.+.|.|.+.|. |. ..++|+++|..+..... ...... ...+.|.+......|.|.|+|.|.+.
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~ 84 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHE 84 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeC
Confidence 468999999999997 53 58999999998865432 111111 11235666666566999999999997
No 154
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.52 E-value=1.7e-06 Score=54.13 Aligned_cols=73 Identities=22% Similarity=0.408 Sum_probs=46.7
Q ss_pred cEEEEEEEeecC---CCeeEEEeC--CE---Ee---cc--C--------cceEEEE--ecceEEEEEcccCCCCCEEEEE
Q psy8425 27 SLRLVCRCKGNP---LPAVSWFKD--NV---EI---TT--N--------KRLKIQF--KKKRSTLIITRIRSEDAGRYEC 83 (176)
Q Consensus 27 ~~~l~C~~~g~p---~p~i~W~~~--g~---~l---~~--~--------~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C 83 (176)
+++|.|.....+ ...+.|+|. +. .+ .. + +|..+.. .....+|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 688999876443 337889983 21 11 10 0 2222221 1246789999999999999999
Q ss_pred EEEcC--CCceEEEEEEEEE
Q psy8425 84 RGTGV--HKDVVSAFAEVSI 101 (176)
Q Consensus 84 ~a~n~--g~~~~s~~~~l~V 101 (176)
.+.+. |..... +.|.|
T Consensus 82 ~v~~~p~g~~~~~--~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAE--LVLTV 99 (100)
T ss_pred EEEeCCCCCeeeE--EEEEe
Confidence 99985 544433 66666
No 155
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.51 E-value=1.1e-06 Score=58.36 Aligned_cols=85 Identities=19% Similarity=0.313 Sum_probs=54.5
Q ss_pred CccccCCCeEEeCCceeEEecCCcEEEEEEEeec-CC-CeeEEEeCCEEecc----CcceE---EEEe-----cceEEEE
Q psy8425 4 GLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGN-PL-PAVSWFKDNVEITT----NKRLK---IQFK-----KKRSTLI 69 (176)
Q Consensus 4 ~l~v~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~-p~-p~i~W~~~g~~l~~----~~~~~---~~~~-----~~~~~L~ 69 (176)
.|.|..+|.+...+......+|+.+.|.|.+.|. |. ..+.|+++|..... ..... .... ...+.|.
T Consensus 32 ~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~ 111 (139)
T cd05771 32 QLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLT 111 (139)
T ss_pred EEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEE
Confidence 4677788887666665555588999999999986 54 38999998854211 00110 0000 1234566
Q ss_pred EcccCCCCCEEEEEEEEcC
Q psy8425 70 ITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 70 i~~v~~~d~G~Y~C~a~n~ 88 (176)
+......+...|.|.+.+.
T Consensus 112 v~~~~~~~g~~ytC~V~H~ 130 (139)
T cd05771 112 LEPGTEDAGATYTCRVSHV 130 (139)
T ss_pred ecCCccCCCCEEEEEEEcC
Confidence 6655555567999999886
No 156
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.50 E-value=4.8e-06 Score=53.30 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=30.7
Q ss_pred ceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEEe
Q psy8425 64 KRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSIN 102 (176)
Q Consensus 64 ~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V~ 102 (176)
.+.+|.|.+++.+|+|.|.|.+.+. ...... +.|.|.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~--v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDT--VSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEE--EEEEEE
Confidence 4689999999999999999999987 555555 777765
No 157
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.48 E-value=1.4e-06 Score=54.27 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=46.8
Q ss_pred ceeEEecCCcEEEEEEEee-cCCCe--eEEEeCCEEeccCcceEE--EEecceEEEEEcccCCCCCE-EEEEEEEcC
Q psy8425 18 RNVSVKLRQSLRLVCRCKG-NPLPA--VSWFKDNVEITTNKRLKI--QFKKKRSTLIITRIRSEDAG-RYECRGTGV 88 (176)
Q Consensus 18 ~~~~v~~G~~~~l~C~~~g-~p~p~--i~W~~~g~~l~~~~~~~~--~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~ 88 (176)
....+.+|+.++|.|.+.| .|.+. |.|||++..+........ .......+|.+... ++|.| .|+|.|.+.
T Consensus 9 ~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~-r~D~g~~~sC~A~l~ 84 (100)
T cd05755 9 LPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVD-REDHGANFSCETELD 84 (100)
T ss_pred CCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecc-hhhCCcEEEEEEEec
Confidence 3344689999999999876 56665 699999998865321100 00123456776544 55555 899999986
No 158
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.46 E-value=1e-06 Score=55.57 Aligned_cols=67 Identities=19% Similarity=0.363 Sum_probs=45.9
Q ss_pred EEecCCcEEEEEEEeecCCCeeEEEeCCE----E---ec---c------------CcceEEEEecceEEEEEcccCCCCC
Q psy8425 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNV----E---IT---T------------NKRLKIQFKKKRSTLIITRIRSEDA 78 (176)
Q Consensus 21 ~v~~G~~~~l~C~~~g~p~p~i~W~~~g~----~---l~---~------------~~~~~~~~~~~~~~L~i~~v~~~d~ 78 (176)
.+.+|++|+|.|.........+.|+|... . +. . ..++.+........|.|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 36789999999988655456799998321 1 10 0 1122222224556899999999999
Q ss_pred EEEEEEEEc
Q psy8425 79 GRYECRGTG 87 (176)
Q Consensus 79 G~Y~C~a~n 87 (176)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998764
No 159
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.42 E-value=5.8e-06 Score=51.55 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=29.6
Q ss_pred ceEEEEEcccCCCCCEEEEEEEEcC--CCceEEEEEEEEE
Q psy8425 64 KRSTLIITRIRSEDAGRYECRGTGV--HKDVVSAFAEVSI 101 (176)
Q Consensus 64 ~~~~L~i~~v~~~d~G~Y~C~a~n~--g~~~~s~~~~l~V 101 (176)
.+.+|.|.+++.+|+|.|.|.+.+. |..... +.|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~--~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQ--LNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEE--EEEEE
Confidence 3478999999999999999999995 655555 77776
No 160
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.41 E-value=2.7e-06 Score=54.79 Aligned_cols=72 Identities=25% Similarity=0.344 Sum_probs=48.7
Q ss_pred CCceeEEecCCcEEEEEEEeecC--CCeeEEEeC--CE-E--e---c-----------cCcceEEEEec--ceEEEEEcc
Q psy8425 16 GLRNVSVKLRQSLRLVCRCKGNP--LPAVSWFKD--NV-E--I---T-----------TNKRLKIQFKK--KRSTLIITR 72 (176)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~~~g~p--~p~i~W~~~--g~-~--l---~-----------~~~~~~~~~~~--~~~~L~i~~ 72 (176)
.+..+.+.+|++++|.|...+.. ...+.|||. |. + + . ...++...... ....|.|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 35567899999999999876443 456899982 21 1 1 0 01334333222 234799999
Q ss_pred cCCCCCEEEEEEEEc
Q psy8425 73 IRSEDAGRYECRGTG 87 (176)
Q Consensus 73 v~~~d~G~Y~C~a~n 87 (176)
++.+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998764
No 161
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.36 E-value=5.3e-06 Score=50.03 Aligned_cols=61 Identities=33% Similarity=0.489 Sum_probs=40.5
Q ss_pred EEEEEEEee-cCCCeeEEEeCCEEeccCcceEEEEe-----cceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 28 LRLVCRCKG-NPLPAVSWFKDNVEITTNKRLKIQFK-----KKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 28 ~~l~C~~~g-~p~p~i~W~~~g~~l~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
+.|.|.+.| .|...++|+|||..+........... ...+.|.+..-...+...|+|.+.+.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~ 68 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHE 68 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEech
Confidence 579999977 67778999999998764321111110 12245666544455667999999997
No 162
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.31 E-value=3.6e-06 Score=47.81 Aligned_cols=61 Identities=26% Similarity=0.556 Sum_probs=45.1
Q ss_pred EEEEEEEeecCCCeeEEEeCCEEeccCcce----EEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 28 LRLVCRCKGNPLPAVSWFKDNVEITTNKRL----KIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 28 ~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
+.|.|.+.+.+...+.|++++......... ..........|.|.+++..|.|.|.|.+.+.
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 65 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNS 65 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecC
Confidence 368999988777799999988766542210 1111145578999999999999999999886
No 163
>KOG3515|consensus
Probab=98.28 E-value=2.9e-06 Score=69.41 Aligned_cols=90 Identities=20% Similarity=0.351 Sum_probs=62.5
Q ss_pred CeEEeCCceeEEecCCcEEEEEEEeecCCC-eeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-
Q psy8425 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLP-AVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV- 88 (176)
Q Consensus 11 p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~- 88 (176)
|......-+..+.+|++|.|.|.+.++|++ .+.|++.+..+. .+... ....+|......++.-+.|.|.+.|.
T Consensus 8 pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~c~a~ns~ 82 (741)
T KOG3515|consen 8 PVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYAT---IADPTLVTTGDVRDTVAELNCRAFNSV 82 (741)
T ss_pred ccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc--ccccc---ccCCceeeecchhhhhhhhhhhhcccc
Confidence 333333333378999999999999877654 899999877665 22111 23457777888888889999999998
Q ss_pred CCceEEEEEEEEEecCCC
Q psy8425 89 HKDVVSAFAEVSINLRPD 106 (176)
Q Consensus 89 g~~~~s~~~~l~V~~~p~ 106 (176)
+...... ..+.|..+|.
T Consensus 83 ~~~~~~~-~~l~v~~~pa 99 (741)
T KOG3515|consen 83 GMPSRCP-MILDVDYPPA 99 (741)
T ss_pred cCceecc-eeeccccCcc
Confidence 5544332 6677777665
No 164
>PHA03376 BARF1; Provisional
Probab=98.27 E-value=2.2e-05 Score=53.81 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=48.0
Q ss_pred eeEEecCCcEEEEEEEee---cCCCeeEEEeCCE----Ee-c--------cC----cceEEEEecceEEEEEcccCCCCC
Q psy8425 19 NVSVKLRQSLRLVCRCKG---NPLPAVSWFKDNV----EI-T--------TN----KRLKIQFKKKRSTLIITRIRSEDA 78 (176)
Q Consensus 19 ~~~v~~G~~~~l~C~~~g---~p~p~i~W~~~g~----~l-~--------~~----~~~~~~~~~~~~~L~i~~v~~~d~ 78 (176)
.+.+..|+++.|.|.... .+.-.|.|+|.+. .+ . .. .++.+....++-+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 456788999999998652 2334788999432 11 1 00 111222225677899999999999
Q ss_pred EEEEEEEEcC
Q psy8425 79 GRYECRGTGV 88 (176)
Q Consensus 79 G~Y~C~a~n~ 88 (176)
|.|+|.....
T Consensus 100 GtY~C~fQkg 109 (221)
T PHA03376 100 GNYLCRMKLG 109 (221)
T ss_pred ceEEEEEEcC
Confidence 9999999876
No 165
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.22 E-value=1.9e-05 Score=48.66 Aligned_cols=63 Identities=27% Similarity=0.467 Sum_probs=38.1
Q ss_pred CCcEEEEEEEeec-CCC-eeEEEeCCEEeccCcce-EEEEecceEEEE---EcccCCCCCEEEEEEEEcC
Q psy8425 25 RQSLRLVCRCKGN-PLP-AVSWFKDNVEITTNKRL-KIQFKKKRSTLI---ITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 25 G~~~~l~C~~~g~-p~p-~i~W~~~g~~l~~~~~~-~~~~~~~~~~L~---i~~v~~~d~G~Y~C~a~n~ 88 (176)
++.++|.|.+.|. |.. .++|+++|..+...... .... ..+++.. .-.+...+...|+|.+.+.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~-~~d~ty~~~s~l~v~~~~~~~ytC~V~H~ 82 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILP-NGDGTYQLWVTLEVPPEDKARYSCRVEHS 82 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEE-CCCCeEEEEEEEEECCCCCCEEEEEEEeC
Confidence 7789999999995 544 88999999643322111 1111 1111111 1223344788999999887
No 166
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.19 E-value=4.4e-05 Score=47.30 Aligned_cols=63 Identities=25% Similarity=0.457 Sum_probs=39.6
Q ss_pred CcEEEEEEEeec-CCCeeEEEeCCE----Eec---c------Ccce--EEEEe---cceEEEEEcccCCCCCEEEEEEEE
Q psy8425 26 QSLRLVCRCKGN-PLPAVSWFKDNV----EIT---T------NKRL--KIQFK---KKRSTLIITRIRSEDAGRYECRGT 86 (176)
Q Consensus 26 ~~~~l~C~~~g~-p~p~i~W~~~g~----~l~---~------~~~~--~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~ 86 (176)
+.++|.|..... ....+.|.|... .+. + ...+ ++.+. ..+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 367899987532 234678987321 110 0 0111 22221 235789999999999999999998
Q ss_pred cC
Q psy8425 87 GV 88 (176)
Q Consensus 87 n~ 88 (176)
..
T Consensus 81 t~ 82 (96)
T cd05889 81 TY 82 (96)
T ss_pred eC
Confidence 87
No 167
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.19 E-value=5e-05 Score=48.38 Aligned_cols=67 Identities=21% Similarity=0.371 Sum_probs=42.1
Q ss_pred eEEecCCcEEEEEEEeec-CC-CeeEEEeCCEEeccCcceEEEEecc------eEEEEEcccCCCCCE-EEEEEEEcC
Q psy8425 20 VSVKLRQSLRLVCRCKGN-PL-PAVSWFKDNVEITTNKRLKIQFKKK------RSTLIITRIRSEDAG-RYECRGTGV 88 (176)
Q Consensus 20 ~~v~~G~~~~l~C~~~g~-p~-p~i~W~~~g~~l~~~~~~~~~~~~~------~~~L~i~~v~~~d~G-~Y~C~a~n~ 88 (176)
.....|+.++|.|.+.|. |. ..++|+|||..+..... ......+ .+.|.+.. ...|.| .|.|.+.+.
T Consensus 16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~ 91 (111)
T cd05772 16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHR 91 (111)
T ss_pred hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeC
Confidence 345578889999999885 43 48899999999864211 1111111 23344443 334444 599999987
No 168
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.17 E-value=2.4e-05 Score=47.62 Aligned_cols=64 Identities=22% Similarity=0.472 Sum_probs=41.8
Q ss_pred CCcEEEEEEE-eecCCCeeEEEeCCEEeccCcceEEEEe-----cceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 25 RQSLRLVCRC-KGNPLPAVSWFKDNVEITTNKRLKIQFK-----KKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 25 G~~~~l~C~~-~g~p~p~i~W~~~g~~l~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
|+.+.+.|.+ .+.|.|.+.|+.++..+........... ...+.|.+..-...+...++|.|.+.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~ 83 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHP 83 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEET
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECC
Confidence 7899999975 5678899999999887722111011110 12356777655555677899999987
No 169
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.11 E-value=1e-05 Score=53.70 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=49.3
Q ss_pred EEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEEecCCCCCCCCCCCCeEEecCCEEEEeccCCeeEEEecCCcccC-
Q psy8425 67 TLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQ- 144 (176)
Q Consensus 67 ~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V~~~p~~~g~p~p~~~~~~~~~~~~i~~d~g~y~C~~~~n~~g~- 144 (176)
+|.|.+++.+|+|.|.|.+.+. +..... +.|.|..+|...-.|. ......++ .-...|. +.|+.-.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~--~~l~v~~~P~v~~~~~--~~~~~~~~-------~~~L~C~-a~g~~P~~ 69 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQI--IQLSVSEPPRVRLSLE--KLVSMIEE-------PQTLICH-IAGYYPLD 69 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeE--EEEEEecCCceEEeCC--CceeecCC-------cEEEEEE-ECCCCCCC
Confidence 6899999999999999999988 776666 8899988776533331 11111222 2244699 8886553
Q ss_pred -cCcccc
Q psy8425 145 -RCESKD 150 (176)
Q Consensus 145 -~c~~~~ 150 (176)
...|..
T Consensus 70 ~~i~W~~ 76 (139)
T cd05771 70 VQVEWTR 76 (139)
T ss_pred eEEEEEE
Confidence 667865
No 170
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.10 E-value=2e-05 Score=46.80 Aligned_cols=58 Identities=31% Similarity=0.599 Sum_probs=38.1
Q ss_pred cEEEEEEEeecCCC--eeEEEeCCE--E---ec-------------cCcceEEEEe--cceEEEEEcccCCCCCEEEEEE
Q psy8425 27 SLRLVCRCKGNPLP--AVSWFKDNV--E---IT-------------TNKRLKIQFK--KKRSTLIITRIRSEDAGRYECR 84 (176)
Q Consensus 27 ~~~l~C~~~g~p~p--~i~W~~~g~--~---l~-------------~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~ 84 (176)
++.|.|.......+ .+.|++... . +. ...++.+... ....+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 46899988765543 788987431 0 10 0123333222 4457899999999999999996
No 171
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.02 E-value=7.6e-05 Score=45.93 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=40.8
Q ss_pred ecCCcEEEEEEEeecCCC--eeEEEeCCEEeccCcceEEEEecceEEEEEc---ccCCCCCEEEEEEEEcC
Q psy8425 23 KLRQSLRLVCRCKGNPLP--AVSWFKDNVEITTNKRLKIQFKKKRSTLIIT---RIRSEDAGRYECRGTGV 88 (176)
Q Consensus 23 ~~G~~~~l~C~~~g~p~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~---~v~~~d~G~Y~C~a~n~ 88 (176)
..|+..+|.|.+.|--++ .+.|+|||.++. +..........+.+..+. .+...+...|.|.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 446777999999985433 679999999876 322111111223333322 23456677899999886
No 172
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.00 E-value=0.00013 Score=45.09 Aligned_cols=64 Identities=23% Similarity=0.367 Sum_probs=39.1
Q ss_pred ecCCcEEEEEEEeec-CCC-eeEEEeCCEEeccCcceEEEEecc------eEEEEEcccCCCCCEEEEEEEEcCC
Q psy8425 23 KLRQSLRLVCRCKGN-PLP-AVSWFKDNVEITTNKRLKIQFKKK------RSTLIITRIRSEDAGRYECRGTGVH 89 (176)
Q Consensus 23 ~~G~~~~l~C~~~g~-p~p-~i~W~~~g~~l~~~~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~n~g 89 (176)
..++.++|.|.+.|- |.. .++|++||.++..+....-..... .+.|.+. ..+...|+|.+...+
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence 346668999999985 543 689999999875431111001111 2334443 345568999998863
No 173
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.96 E-value=0.00012 Score=43.21 Aligned_cols=61 Identities=25% Similarity=0.366 Sum_probs=38.7
Q ss_pred EEEEEEEeec-CC-CeeEEEeCCEEeccCcce-EEEEe-----cceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 28 LRLVCRCKGN-PL-PAVSWFKDNVEITTNKRL-KIQFK-----KKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 28 ~~l~C~~~g~-p~-p~i~W~~~g~~l~~~~~~-~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
++|.|.+.|. |. ..+.|+|||.++..+... ..... ...+.|.+......+...|+|.+.+.
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 6799999886 44 489999999875432111 01110 11345666555556778999999876
No 174
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=97.94 E-value=1.7e-05 Score=50.36 Aligned_cols=44 Identities=32% Similarity=0.822 Sum_probs=37.0
Q ss_pred CCCC--CCeEEecCCEEEEeccCCeeEEEecCCcccCcCcccccccc
Q psy8425 110 GPCP--LDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVYNR 154 (176)
Q Consensus 110 ~p~p--~~~~~~~~~~~~i~~d~g~y~C~~~~n~~g~~c~~~~~~~~ 154 (176)
.+|| ...+|++| .|....|...+.|.|..||.|.|||...+...
T Consensus 43 ~~Cp~ey~~YClHG-~C~yI~dl~~~~CrC~~GYtGeRCEh~dLl~~ 88 (139)
T PHA03099 43 RLCGPEGDGYCLHG-DCIHARDIDGMYCRCSHGYTGIRCQHVVLVDY 88 (139)
T ss_pred ccCChhhCCEeECC-EEEeeccCCCceeECCCCcccccccceeeeee
Confidence 3455 45899997 89999999999999999999999998875443
No 175
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.90 E-value=0.00014 Score=44.92 Aligned_cols=63 Identities=24% Similarity=0.308 Sum_probs=39.9
Q ss_pred ecCCcEEEEEEEeec-CCC-eeEEEeCCEEeccCcceEEEEecc------eEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 23 KLRQSLRLVCRCKGN-PLP-AVSWFKDNVEITTNKRLKIQFKKK------RSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 23 ~~G~~~~l~C~~~g~-p~p-~i~W~~~g~~l~~~~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
..|+.++|.|.+.|. |.. .+.|++||..+............. .+.|.+ ...+...|+|.+...
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~ 82 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHS 82 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeC
Confidence 468889999999985 444 689999999876531111001111 123333 334566899999987
No 176
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.88 E-value=4.8e-05 Score=43.43 Aligned_cols=49 Identities=20% Similarity=0.399 Sum_probs=36.7
Q ss_pred CCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEc
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTG 87 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 87 (176)
.+.|.|.|.. ..+|.|++ |..+... .+.+|.+-....+-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~---------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEV---------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccccccc---------cccEEeccCcccCCCcceEecCcc
Confidence 4578999965 25699999 5554431 245788888888889999998876
No 177
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.83 E-value=9.3e-05 Score=46.24 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=43.0
Q ss_pred CceeEEecCCcEEEEEEEeec-C-CCeeEEEeCCEEeccCcceEEEEec------ceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 17 LRNVSVKLRQSLRLVCRCKGN-P-LPAVSWFKDNVEITTNKRLKIQFKK------KRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~~~g~-p-~p~i~W~~~g~~l~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
+.......++.++|.|.+.|- | .-.+.|++||..+..+......... ..+.|.+..-.-.+...|+|.+...
T Consensus 9 p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~ 88 (100)
T cd07699 9 PSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHE 88 (100)
T ss_pred CCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEec
Confidence 333334467889999999884 4 2378999999988542110000101 1233444433333467899999887
No 178
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.83 E-value=0.0001 Score=46.24 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=40.5
Q ss_pred EEecCCcEEEEEEEeecCCC--eeEEEeCCEEeccCcceEE--EEe-------cceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 21 SVKLRQSLRLVCRCKGNPLP--AVSWFKDNVEITTNKRLKI--QFK-------KKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 21 ~v~~G~~~~l~C~~~g~p~p--~i~W~~~g~~l~~~~~~~~--~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
.+..|+.++|.|.+.|..++ .+.|++||.++........ ... ...+.|.+..-.-.+...|+|.+...
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence 34457889999999985444 5799999988754211110 000 11233444322223456799999887
No 179
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.82 E-value=5e-05 Score=43.02 Aligned_cols=52 Identities=13% Similarity=0.356 Sum_probs=36.0
Q ss_pred ecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 23 KLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 23 ~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
..|.+|+|+|...+. .+.|.+|+..+... ...+.+.+-. +++|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~----------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS----------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCC----------CceEEeeccC-CCCceEEEEeCCC
Confidence 468999999975422 38999998555442 1234444555 8899999998653
No 180
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.74 E-value=0.00048 Score=42.57 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=37.1
Q ss_pred CcEEEEEEE-eecCCCeeEEEeCCEEeccCcceEEEEe-----cceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 26 QSLRLVCRC-KGNPLPAVSWFKDNVEITTNKRLKIQFK-----KKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 26 ~~~~l~C~~-~g~p~p~i~W~~~g~~l~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
....+.|.+ .|.|.+.|.|+++.. .......... ...+.|.+.....+|.-.|+|.+.+.
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~---~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~ 81 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLG---GEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHP 81 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCC---CcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCc
Confidence 456788997 688999999999711 1000000000 11346666555555566899999998
No 181
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.72 E-value=0.00028 Score=43.55 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=39.5
Q ss_pred cCCcEEEEEEEeec-CCC-eeEEEeCCEEeccCcce-EEEEe-----cceEEEEEcccCCCCCEEEEEEEEcCC
Q psy8425 24 LRQSLRLVCRCKGN-PLP-AVSWFKDNVEITTNKRL-KIQFK-----KKRSTLIITRIRSEDAGRYECRGTGVH 89 (176)
Q Consensus 24 ~G~~~~l~C~~~g~-p~p-~i~W~~~g~~l~~~~~~-~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~g 89 (176)
..+.+.|.|.+.|. |.. .+.|+++|..+..+... ..... ...+.|.+..-.-.+...|.|.+...+
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 45668999999985 443 68999999886332110 00110 112344444333335578999998873
No 182
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.71 E-value=0.00045 Score=42.75 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=38.1
Q ss_pred EecCCcEEEEEEEeec-CCC-eeEEEeCCEEeccCcceEEEEec-----ceEEEEEcccCCCCCEEEEEEEEcCC
Q psy8425 22 VKLRQSLRLVCRCKGN-PLP-AVSWFKDNVEITTNKRLKIQFKK-----KRSTLIITRIRSEDAGRYECRGTGVH 89 (176)
Q Consensus 22 v~~G~~~~l~C~~~g~-p~p-~i~W~~~g~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~g 89 (176)
...+..++|.|.+.|- |.. .++|++||..+..+......... ..+.|.+..-. ....|+|.+...+
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 3446678999999985 433 67899999886542111101111 12334333221 2335999998863
No 183
>PHA02887 EGF-like protein; Provisional
Probab=97.68 E-value=5e-05 Score=47.51 Aligned_cols=40 Identities=35% Similarity=0.863 Sum_probs=34.5
Q ss_pred CCCCCCC--eEEecCCEEEEeccCCeeEEEecCCcccCcCccc
Q psy8425 109 GGPCPLD--SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESK 149 (176)
Q Consensus 109 g~p~p~~--~~~~~~~~~~i~~d~g~y~C~~~~n~~g~~c~~~ 149 (176)
-.|||+. .+|++ |.|....|..++.|.|..||.|.||+..
T Consensus 83 f~pC~~eyk~YCiH-G~C~yI~dL~epsCrC~~GYtG~RCE~v 124 (126)
T PHA02887 83 FEKCKNDFNDFCIN-GECMNIIDLDEKFCICNKGYTGIRCDEV 124 (126)
T ss_pred ccccChHhhCEeeC-CEEEccccCCCceeECCCCcccCCCCcc
Confidence 4688743 89995 6999999999999999999999999753
No 184
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.64 E-value=0.00079 Score=41.70 Aligned_cols=68 Identities=19% Similarity=0.294 Sum_probs=38.6
Q ss_pred eEEecCCcEEEEEEEeec--CCC-eeEEEeCCEEeccCcceEEEEecce------EEEEEcccCCCCCEEEEEEEEcC
Q psy8425 20 VSVKLRQSLRLVCRCKGN--PLP-AVSWFKDNVEITTNKRLKIQFKKKR------STLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 20 ~~v~~G~~~~l~C~~~g~--p~p-~i~W~~~g~~l~~~~~~~~~~~~~~------~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
..+..|+.++|.|.+.|- |.. .++|+||+....... ........+ +.|.+..-.-.+.-.|.|.+...
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~-~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~ 85 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKAS-IQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHP 85 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEE-ecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECC
Confidence 345668999999999988 433 679999875332100 000001122 23333322212344799999987
No 185
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.58 E-value=0.0009 Score=42.86 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=45.1
Q ss_pred CCceeEEecCCcEEEEEEEeec-CCC-eeEEEeCCEEeccCcceE-EEEe------cceEEEEEcccCCCC-CEEEEEEE
Q psy8425 16 GLRNVSVKLRQSLRLVCRCKGN-PLP-AVSWFKDNVEITTNKRLK-IQFK------KKRSTLIITRIRSED-AGRYECRG 85 (176)
Q Consensus 16 ~~~~~~v~~G~~~~l~C~~~g~-p~p-~i~W~~~g~~l~~~~~~~-~~~~------~~~~~L~i~~v~~~d-~G~Y~C~a 85 (176)
++....+.+++.++|.|.+.|. |.. .+.|+|||..+..+.... .... ...+.|.+....-.+ ...|.|.+
T Consensus 9 ~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V 88 (115)
T cd05769 9 PPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIV 88 (115)
T ss_pred CcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEE
Confidence 3433344467789999999885 443 789999998876432100 0111 122345555433323 46899999
Q ss_pred EcCCCc
Q psy8425 86 TGVHKD 91 (176)
Q Consensus 86 ~n~g~~ 91 (176)
...+..
T Consensus 89 ~H~g~~ 94 (115)
T cd05769 89 QFYGGT 94 (115)
T ss_pred EEeCCc
Confidence 987433
No 186
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.58 E-value=0.0009 Score=41.34 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=39.3
Q ss_pred CcEEEEEEEe-ecCCCeeEEEeCCEEeccCcceEEEEe-----cceEEEEEcccCCCCCEEEEEEEEcC-CCceEE
Q psy8425 26 QSLRLVCRCK-GNPLPAVSWFKDNVEITTNKRLKIQFK-----KKRSTLIITRIRSEDAGRYECRGTGV-HKDVVS 94 (176)
Q Consensus 26 ~~~~l~C~~~-g~p~p~i~W~~~g~~l~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s 94 (176)
....+.|.+. |.|.+.|+|+++..... ....... ...+.|.+.....+|.-.|+|.+.+. ......
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~---~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~ 88 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNA---NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQL 88 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCe---eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 4577899865 78999999999721110 0000000 11345666555555566899999998 444434
No 187
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.53 E-value=0.0014 Score=39.27 Aligned_cols=62 Identities=29% Similarity=0.456 Sum_probs=40.4
Q ss_pred cCCcEEEEEEEeec-CCC-eeEEEeCCEEeccCcceEEEE-e-----cceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 24 LRQSLRLVCRCKGN-PLP-AVSWFKDNVEITTNKRLKIQF-K-----KKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 24 ~G~~~~l~C~~~g~-p~p-~i~W~~~g~~l~~~~~~~~~~-~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
.++.++|.|.+.+. |.. .+.|+++|..+.......... . ...+.|.+. ..+...|.|.+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~ 76 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHE 76 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEET
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEEC
Confidence 38899999999885 544 689999999876532221111 1 112345444 44555899999887
No 188
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.51 E-value=0.0014 Score=41.73 Aligned_cols=68 Identities=16% Similarity=0.274 Sum_probs=45.3
Q ss_pred ceeEEecCCcEEEEEEEeecCCC---eeEEEeC--CE-Eec------------cCcceEEEEe--cceEEEEEcccCCCC
Q psy8425 18 RNVSVKLRQSLRLVCRCKGNPLP---AVSWFKD--NV-EIT------------TNKRLKIQFK--KKRSTLIITRIRSED 77 (176)
Q Consensus 18 ~~~~v~~G~~~~l~C~~~g~p~p---~i~W~~~--g~-~l~------------~~~~~~~~~~--~~~~~L~i~~v~~~d 77 (176)
....+..|..++|.|.++|.... .+.|+|. |. +.. ...++....+ .+.-+|.|.+++.+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 34567788899999999775443 5778872 21 110 1133322222 455689999999999
Q ss_pred CEEEEEEE
Q psy8425 78 AGRYECRG 85 (176)
Q Consensus 78 ~G~Y~C~a 85 (176)
++.|.|..
T Consensus 86 Ta~Y~Ca~ 93 (115)
T cd05721 86 TDIYFCKI 93 (115)
T ss_pred CeEEEEEe
Confidence 99999964
No 189
>PHA02633 hypothetical protein; Provisional
Probab=97.46 E-value=0.00041 Score=38.67 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=31.2
Q ss_pred ceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEEecCC
Q psy8425 64 KRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSINLRP 105 (176)
Q Consensus 64 ~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V~~~p 105 (176)
....|.|-++..+|+|.|.|...|. -....+ +.|.|....
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~s--i~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMK--FDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEE--EEEEEeecc
Confidence 4457999999999999999999988 555555 777776543
No 190
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.28 E-value=0.00096 Score=41.48 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=40.0
Q ss_pred EeCCceeEEecCCcEEEEEEEeecC--CC-eeEEEeCCEEeccCcceEEEEecc------eEEEEEcccCCCCCEEEEEE
Q psy8425 14 VSGLRNVSVKLRQSLRLVCRCKGNP--LP-AVSWFKDNVEITTNKRLKIQFKKK------RSTLIITRIRSEDAGRYECR 84 (176)
Q Consensus 14 ~~~~~~~~v~~G~~~~l~C~~~g~p--~p-~i~W~~~g~~l~~~~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~ 84 (176)
+.+|.......+..++|.|.+.+.- .. .+.|.++|.. .. ......... .+.|.+..-.-.....|+|.
T Consensus 8 l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~--~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~ 84 (99)
T cd04986 8 LQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EA--VQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACT 84 (99)
T ss_pred EECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-Cc--EEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEE
Confidence 3444433445688999999999844 33 7889999875 11 100000011 23444432111223469999
Q ss_pred EEcC
Q psy8425 85 GTGV 88 (176)
Q Consensus 85 a~n~ 88 (176)
+.+.
T Consensus 85 V~H~ 88 (99)
T cd04986 85 VTHP 88 (99)
T ss_pred EECC
Confidence 9987
No 191
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.18 E-value=0.0029 Score=39.16 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=43.9
Q ss_pred ceeEEecCCcEEE-EEEE-eecCCCeeEEEeCCEEecc-----CcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 18 RNVSVKLRQSLRL-VCRC-KGNPLPAVSWFKDNVEITT-----NKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 18 ~~~~v~~G~~~~l-~C~~-~g~p~p~i~W~~~g~~l~~-----~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
....+.+|+.+.+ .|.+ .|.|.+.|+|+.+...... ..+-.+ .-.+.+.+...+..|.-.++|.+.+.
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~---TV~S~~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTT---TVTSEYIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCE---EEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence 3456788888888 8875 6789999999986322111 000011 12345666555556666899999988
No 192
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.04 E-value=0.00075 Score=39.50 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=24.0
Q ss_pred EEecCCEEEE----eccCCeeEEEecCCcccCcC
Q psy8425 117 YCLNGGSCTY----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 117 ~~~~~~~~~i----~~d~g~y~C~~~~n~~g~~c 146 (176)
....+++|.| .+|.|.|+|. |.|..|..-
T Consensus 34 ~~~~~g~L~I~~v~~~D~G~Y~C~-A~N~~G~~~ 66 (73)
T cd05852 34 SIWDDGSLEILNITKLDEGSYTCF-AENNRGKAN 66 (73)
T ss_pred EEcCCCEEEECcCChhHCEEEEEE-EECCCCcee
Confidence 3446788988 7999999999 999998754
No 193
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=97.02 E-value=0.00065 Score=40.45 Aligned_cols=24 Identities=17% Similarity=0.036 Sum_probs=19.4
Q ss_pred CEEEE----eccCCeeEEEecCCcccCcC
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~~c 146 (176)
+.|.| .+|+|.|+|. |+|..|..-
T Consensus 44 ~~L~i~~~~~~D~G~YtC~-A~N~~G~~~ 71 (79)
T cd05855 44 GCLQLDNPTHLNNGIYTLV-AKNEYGEDE 71 (79)
T ss_pred EEEEECCCCcccCEEEEEE-EEcCCcccc
Confidence 34555 6899999999 999999643
No 194
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.02 E-value=0.004 Score=38.48 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=36.6
Q ss_pred cCCcEEEEEEEeec-CCC-eeEEEeCCEEeccCcce--EEEE-e---cceEEEEEcccCCCCCEEEEEEEEcCC
Q psy8425 24 LRQSLRLVCRCKGN-PLP-AVSWFKDNVEITTNKRL--KIQF-K---KKRSTLIITRIRSEDAGRYECRGTGVH 89 (176)
Q Consensus 24 ~G~~~~l~C~~~g~-p~p-~i~W~~~g~~l~~~~~~--~~~~-~---~~~~~L~i~~v~~~d~G~Y~C~a~n~g 89 (176)
.++.++|.|.+.|. |.. .++|+|||.. ..+... .+.. + ...+.|.+..-.-...-.|.|.+...+
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46678999999985 433 6789999997 322100 0110 0 112234433321112457999998864
No 195
>KOG1480|consensus
Probab=97.01 E-value=0.00025 Score=58.07 Aligned_cols=73 Identities=29% Similarity=0.534 Sum_probs=58.2
Q ss_pred EEeCCceeEEecCCcEEEEEE-EeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 13 EVSGLRNVSVKLRQSLRLVCR-CKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~-~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
|...+....|.+++.+.+.|. ..+.|...+.|++++..+.++..... .....|.+..++..|.|+|+|.|.|.
T Consensus 132 f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~---~~d~~li~~~arlsd~~nytc~a~ni 205 (909)
T KOG1480|consen 132 FEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIR---ASDHNLIISQARLSDSGNYTCEATNI 205 (909)
T ss_pred hccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchh---hhcCCccccchhhhhcccceeeeehh
Confidence 344555667888999999987 47788889999999988877443332 34567899999999999999999998
No 196
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=96.89 E-value=0.0015 Score=37.53 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=22.7
Q ss_pred EEecCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 117 YCLNGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 117 ~~~~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
....++.|.| .+|+|.|+|. |.|..|..
T Consensus 30 ~~~~~~~L~I~~v~~~D~G~Y~C~-a~N~~G~~ 61 (69)
T cd05725 30 EILDDKSLKIRNVTAGDEGSYTCE-AENMVGKI 61 (69)
T ss_pred EEeeCCEEEECcCChhHCEEEEEE-EEcCCCcE
Confidence 3446678888 6899999999 99998864
No 197
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=96.89 E-value=0.00091 Score=39.11 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=22.9
Q ss_pred EEecCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 117 YCLNGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 117 ~~~~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
....++.|.| .+|.|.|.|. |.|..|..
T Consensus 35 ~~~~~~~L~I~~v~~~D~G~Y~C~-A~N~~G~~ 66 (74)
T cd05745 35 LVLSSGTLRISRVALHDQGQYECQ-AVNIVGSQ 66 (74)
T ss_pred EEccCCeEEEeeCCHHhCEEEEEE-EEeCCCce
Confidence 3456678888 6999999999 99999864
No 198
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=96.88 E-value=0.0013 Score=40.01 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=23.5
Q ss_pred eEEecCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 116 SYCLNGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 116 ~~~~~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
.....++.|.| .+|+|.|+|. |.|..|..
T Consensus 47 ~~~~~~~~L~I~~v~~~D~G~Y~C~-A~N~~G~~ 79 (88)
T cd05851 47 EISMSGAVLKIFNIQPEDEGTYECE-AENIKGKD 79 (88)
T ss_pred EEecCCCEEEECcCChhhCEEEEEE-EEcCCCce
Confidence 34456778888 6899999999 99999964
No 199
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=96.87 E-value=0.00083 Score=38.99 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=22.2
Q ss_pred EecCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 118 CLNGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 118 ~~~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
...++.|.| .+|+|.|.|. |.|..|..
T Consensus 32 ~~~~~~L~I~~v~~~D~G~Y~C~-a~N~~G~~ 62 (71)
T cd05876 32 LNNNKTLQLDNVLESDDGEYVCT-AENSEGSA 62 (71)
T ss_pred EcCCCEEEEcccCHHhCEEEEEE-EEcCCCeE
Confidence 345678887 6899999999 99999964
No 200
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.85 E-value=0.0021 Score=46.41 Aligned_cols=48 Identities=17% Similarity=0.341 Sum_probs=38.4
Q ss_pred CCCeeEEEe-CCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 38 PLPAVSWFK-DNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 38 p~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
..|.+.|.. +|+.+..+....+ ...+.|.+.+....++|.|+|.....
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nI---T~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNI---TETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEE---ccCceEEeeccccccCCceEEEEEEE
Confidence 568899988 5667776555555 46678999999999999999988765
No 201
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=96.83 E-value=0.0012 Score=31.99 Aligned_cols=28 Identities=43% Similarity=1.035 Sum_probs=22.7
Q ss_pred EEecCCEEEEeccCCeeEEEecCCcccCc
Q psy8425 117 YCLNGGSCTYYDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 117 ~~~~~~~~~i~~d~g~y~C~~~~n~~g~~ 145 (176)
.+.++|+|.... .+.|.|.|..+|.|++
T Consensus 5 ~C~n~g~C~~~~-~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 5 PCQNGGTCIDLP-GGGYTCECPPGYTGKR 32 (32)
T ss_dssp SSTTTEEEEEES-TSEEEEEEBTTEESTT
T ss_pred cCCCCeEEEeCC-CCCEEeECCCCCccCC
Confidence 467889997433 6999999999999974
No 202
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=96.79 E-value=0.0021 Score=39.54 Aligned_cols=29 Identities=28% Similarity=0.605 Sum_probs=23.5
Q ss_pred eEEecCCEEEE-----eccCCeeEEEecCCcccCc
Q psy8425 116 SYCLNGGSCTY-----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 116 ~~~~~~~~~~i-----~~d~g~y~C~~~~n~~g~~ 145 (176)
.+.+.++.|.| .+|+|.|.|. |.|..|..
T Consensus 51 ~~~~~~g~L~I~~~~~~~D~G~Y~C~-A~N~~G~~ 84 (93)
T cd05849 51 RYSMVGGNLVINNPDKYKDAGRYVCI-VSNIYGKV 84 (93)
T ss_pred eEEEECCEEEECcCCcCCCCEEEEEE-EEeCcceE
Confidence 44566788888 3799999999 99999964
No 203
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=96.79 E-value=0.00099 Score=38.65 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=21.3
Q ss_pred EecCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 118 CLNGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 118 ~~~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
...++.+.| .+|+|.|+|. |.|..|..
T Consensus 33 ~~~~~~l~i~~v~~~D~G~Y~C~-A~N~~G~~ 63 (71)
T cd05723 33 IVKEHNLQVLGLVKSDEGFYQCI-AENDVGNV 63 (71)
T ss_pred EEecCCEEEEcCCcccCEEEEEE-EEcCCCEE
Confidence 344556666 7999999999 99999864
No 204
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=96.77 E-value=0.0016 Score=37.50 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.9
Q ss_pred ecCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 119 LNGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 119 ~~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
..++.|.| .+|+|.|.|. |.|..|..
T Consensus 33 ~~~~~L~I~~~~~~D~G~Y~C~-a~N~~G~~ 62 (69)
T cd05746 33 SPEGYLAIRDVGVADQGRYECV-ARNTIGYA 62 (69)
T ss_pred CCCCEEEECcCChhhCEEEEEE-EECCCCcE
Confidence 34677888 7999999999 99999974
No 205
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.71 E-value=0.0041 Score=40.48 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=42.3
Q ss_pred EEecCCcEEEEEEEeec-----CCCeeEEEeCCEEeccC--cceEEE-----------EecceEEEEEcccCCCCCEEEE
Q psy8425 21 SVKLRQSLRLVCRCKGN-----PLPAVSWFKDNVEITTN--KRLKIQ-----------FKKKRSTLIITRIRSEDAGRYE 82 (176)
Q Consensus 21 ~v~~G~~~~l~C~~~g~-----p~p~i~W~~~g~~l~~~--~~~~~~-----------~~~~~~~L~i~~v~~~d~G~Y~ 82 (176)
...-.+++.|.|.+... +.-.+.|..+|..+-.- ...... ...++.+|.+...+.- .|.|+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 34558899999998642 22358899988765321 100110 0134456888876555 89999
Q ss_pred EEEEcC-CCceEEEEEEEEE
Q psy8425 83 CRGTGV-HKDVVSAFAEVSI 101 (176)
Q Consensus 83 C~a~n~-g~~~~s~~~~l~V 101 (176)
|.+... ...... +.|..
T Consensus 102 CeVt~~~~ege~~--i~Lk~ 119 (130)
T PF08204_consen 102 CEVTELSREGETT--IELKY 119 (130)
T ss_dssp EEEEETTEEEEEE--EEEEE
T ss_pred EEEEecCCCceEE--EEEEE
Confidence 999887 433333 55554
No 206
>PHA02982 hypothetical protein; Provisional
Probab=96.70 E-value=0.0072 Score=42.29 Aligned_cols=70 Identities=16% Similarity=0.426 Sum_probs=49.1
Q ss_pred eeEEecCCcEEEEEEEee-cCCCeeEEEeCC-EEec----------c--------CcceEEEEecceEEEEEcccCCCCC
Q psy8425 19 NVSVKLRQSLRLVCRCKG-NPLPAVSWFKDN-VEIT----------T--------NKRLKIQFKKKRSTLIITRIRSEDA 78 (176)
Q Consensus 19 ~~~v~~G~~~~l~C~~~g-~p~p~i~W~~~g-~~l~----------~--------~~~~~~~~~~~~~~L~i~~v~~~d~ 78 (176)
++....++.+.|.|.... .-.....|+++. ..+. . ...+.+......++|+|.++..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 345667999999998432 222367798743 2222 1 1223455557889999999999999
Q ss_pred EEEEEEEEcC
Q psy8425 79 GRYECRGTGV 88 (176)
Q Consensus 79 G~Y~C~a~n~ 88 (176)
|-|+|.+...
T Consensus 113 GCYtc~~ks~ 122 (251)
T PHA02982 113 GCFTCEAKDA 122 (251)
T ss_pred CceEEEEecC
Confidence 9999999985
No 207
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=96.68 E-value=0.00041 Score=39.93 Aligned_cols=23 Identities=9% Similarity=-0.116 Sum_probs=18.9
Q ss_pred CCEEEE----eccCCeeEEEecCCcccC
Q psy8425 121 GGSCTY----YDTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 121 ~~~~~i----~~d~g~y~C~~~~n~~g~ 144 (176)
++.|.| .+|+|.|+|. |.|..|.
T Consensus 30 ~~~L~i~~v~~~D~G~YtC~-a~N~~g~ 56 (67)
T cd05863 30 QHSLQIKDVTEASAGTYTLV-LWNSAAG 56 (67)
T ss_pred cCEEEECCCCHHHCEEEEEE-EEECCcc
Confidence 345666 7999999999 9999885
No 208
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=96.68 E-value=0.0018 Score=38.74 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=19.1
Q ss_pred CEEEE----eccCCeeEEEecCCcccCc
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
+.|.| .+|+|.|+|. |.|..|..
T Consensus 46 ~~L~I~~~~~~D~G~YtC~-A~N~~G~~ 72 (81)
T cd04971 46 GCLQFDNPTHVNNGNYTLV-ASNEYGQD 72 (81)
T ss_pred EEEEECCCCcccCeEEEEE-EEeCCCCe
Confidence 34666 6899999999 99999974
No 209
>KOG3515|consensus
Probab=96.65 E-value=0.0072 Score=50.17 Aligned_cols=102 Identities=11% Similarity=0.049 Sum_probs=66.3
Q ss_pred CCccccCCCeEE-eCCceeEEecCCcEEEEEEEeecCC-CeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEE
Q psy8425 3 KGLRATIHPIEV-SGLRNVSVKLRQSLRLVCRCKGNPL-PAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGR 80 (176)
Q Consensus 3 ~~l~v~~~p~~~-~~~~~~~v~~G~~~~l~C~~~g~p~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 80 (176)
..|.+..+|.+. .....+...+++.....-.+.+.|. +.+.|..++-.+.......+........+.+.++.+.|.|.
T Consensus 393 ~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~ 472 (741)
T KOG3515|consen 393 FLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGS 472 (741)
T ss_pred eeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCc
Confidence 344555566544 3344455556665555444445554 57889999888877655444443444445577899999999
Q ss_pred EEEEEEcC-CCceEEEEEEEEEecCCC
Q psy8425 81 YECRGTGV-HKDVVSAFAEVSINLRPD 106 (176)
Q Consensus 81 Y~C~a~n~-g~~~~s~~~~l~V~~~p~ 106 (176)
|.|.+.|. |+.... ..+.+...|.
T Consensus 473 y~~tatns~gg~~~~--~~~~~~~sp~ 497 (741)
T KOG3515|consen 473 YGLTATNSPGGAQAY--LLLGVHTSPH 497 (741)
T ss_pred ceeeeccCCCceeeE--EeeccccCCc
Confidence 99999999 777655 5566666554
No 210
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=96.57 E-value=0.0022 Score=37.63 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=23.8
Q ss_pred eEEecCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 116 SYCLNGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 116 ~~~~~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
.....++.|.| .+|+|.|+|. |.|..|..
T Consensus 35 ~~~~~~~~L~I~~~~~~D~G~Y~C~-a~N~~G~~ 67 (76)
T cd05867 35 RRHVSSGALILTDVQPSDTAVYQCE-ARNRHGNL 67 (76)
T ss_pred eEEeeCCEEEECCCChhhCEEEEEE-EECCCCeE
Confidence 44556778888 7999999999 99999864
No 211
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=96.54 E-value=0.003 Score=38.84 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=23.2
Q ss_pred eEEecCCEEEE-----eccCCeeEEEecCCcccCcC
Q psy8425 116 SYCLNGGSCTY-----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 116 ~~~~~~~~~~i-----~~d~g~y~C~~~~n~~g~~c 146 (176)
.+...++.+.| .+|.|.|.|. |.|..|...
T Consensus 52 ~~~~~~g~L~i~~~~~~~D~G~Y~C~-A~N~~G~~~ 86 (94)
T cd05848 52 RYSLIDGNLIISNPSEVKDSGRYQCL-ATNSIGSIL 86 (94)
T ss_pred eEEeeCCeEEEccCCccCcCEEEEEE-EEcCCCeEE
Confidence 44455677777 3799999999 999999653
No 212
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=96.53 E-value=0.0017 Score=38.22 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=18.9
Q ss_pred EEEE----eccCCeeEEEecCCcccCc
Q psy8425 123 SCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 123 ~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
.|.| .+|+|.|+|. |.|..|..
T Consensus 42 ~L~I~~v~~~D~G~Y~C~-A~N~~G~~ 67 (75)
T cd05893 42 CLLIQGATKEDAGWYTVS-AKNEAGIV 67 (75)
T ss_pred EEEECCCCHHHCEEEEEE-EEcCCCEE
Confidence 4666 7999999999 99999965
No 213
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=96.51 E-value=0.0025 Score=37.25 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=22.7
Q ss_pred EecCCEEEE----eccCCeeEEEecCCcccCcC
Q psy8425 118 CLNGGSCTY----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 118 ~~~~~~~~i----~~d~g~y~C~~~~n~~g~~c 146 (176)
...++.|.| .+|+|.|.|. |.|..|...
T Consensus 34 ~~~~g~L~i~~~~~~D~G~Y~C~-a~N~~G~~~ 65 (74)
T cd05738 34 QLRSGALQIENSEESDQGKYECV-ATNSAGTRY 65 (74)
T ss_pred EcCCcEEEECCCChhhCEEEEEE-EECCCCceE
Confidence 345677877 6899999999 999999754
No 214
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=96.50 E-value=0.0038 Score=38.02 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=20.2
Q ss_pred CCEEEE----eccCCeeEEEecCCcccCcC
Q psy8425 121 GGSCTY----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 121 ~~~~~i----~~d~g~y~C~~~~n~~g~~c 146 (176)
.+.+.| .+|+|.|+|. |.|..|..-
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~-A~N~~G~~~ 82 (90)
T cd04974 54 SEVLYLRNVSFDDAGEYTCL-AGNSIGPSH 82 (90)
T ss_pred cceEEEeccccccCcEEEEE-eecccCccc
Confidence 346666 5899999999 999999653
No 215
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=96.43 E-value=0.0044 Score=38.09 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=23.6
Q ss_pred eEEecCCEEEE-----eccCCeeEEEecCCcccCcC
Q psy8425 116 SYCLNGGSCTY-----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 116 ~~~~~~~~~~i-----~~d~g~y~C~~~~n~~g~~c 146 (176)
...+.++.|.| ..|.|.|.|. |.|..|...
T Consensus 52 ~~~~~~g~L~I~~~~~~~D~G~Y~C~-A~N~~G~~~ 86 (94)
T cd05850 52 RYTLVAGNLVINNPQKARDAGSYQCL-AINRCGTVV 86 (94)
T ss_pred eEEEECCeEEEccCCccCcCEEEEEE-EEcCcCcEE
Confidence 44456778877 3799999999 999999654
No 216
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.43 E-value=0.02 Score=35.42 Aligned_cols=65 Identities=15% Similarity=0.283 Sum_probs=40.4
Q ss_pred EecCCcEEEEEEEeec-CC--CeeEEEeCCEEeccCcceEEE-----EecceEEEEEcccCCCCCE-EEEEEEEcC
Q psy8425 22 VKLRQSLRLVCRCKGN-PL--PAVSWFKDNVEITTNKRLKIQ-----FKKKRSTLIITRIRSEDAG-RYECRGTGV 88 (176)
Q Consensus 22 v~~G~~~~l~C~~~g~-p~--p~i~W~~~g~~l~~~~~~~~~-----~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~ 88 (176)
+.+|..+++.|.+.+. |. ..+.|+++...+.... +.-. .......+.+.-. ++|.| .|.|.|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 4789999999998754 44 4688998776655421 1100 0012245555543 66666 899987654
No 217
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.43 E-value=0.0046 Score=36.13 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=20.5
Q ss_pred cCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 120 NGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 120 ~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
.++.+.| .+|+|.|.|. |.|..|..
T Consensus 38 ~~~~L~I~~~~~~D~G~Y~C~-A~N~~G~~ 66 (75)
T cd05763 38 EDDVFFIVDVKIEDTGVYSCT-AQNTAGSI 66 (75)
T ss_pred CCCEEEEeeCCcccCEEEEEE-EEcCCCEE
Confidence 4567777 6899999999 99998864
No 218
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=96.39 E-value=0.0037 Score=36.34 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=22.5
Q ss_pred EEecCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 117 YCLNGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 117 ~~~~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
....+++|.| .+|+|.|+|. |.|..|..
T Consensus 34 ~~~~~~~L~i~~v~~~D~G~Y~C~-a~N~~G~~ 65 (73)
T cd04969 34 CIWPDGSLEILNVTKSDEGKYTCF-AENFFGKA 65 (73)
T ss_pred EECCCCeEEEccCChhHCEEEEEE-EECCCCce
Confidence 3445577888 6899999999 99998864
No 219
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.36 E-value=0.06 Score=33.66 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=30.6
Q ss_pred EEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEEe
Q psy8425 59 IQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSIN 102 (176)
Q Consensus 59 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V~ 102 (176)
+.+...+.+|.|..++.+|+|.|.-.+++. |... ...+.+.|.
T Consensus 64 ~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~-~~~FqVsVF 107 (108)
T PF11465_consen 64 FNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVC-TKNFQVSVF 107 (108)
T ss_dssp EEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEE-EEEEEEEEE
T ss_pred EeeeccCceEEEeecCcccCceEEEEEEcCCCcEE-EEEEEEEee
Confidence 334467789999999999999999999999 6553 322666554
No 220
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=96.35 E-value=0.0042 Score=36.52 Aligned_cols=23 Identities=13% Similarity=0.014 Sum_probs=19.5
Q ss_pred EEEE----eccCCeeEEEecCCcccCcC
Q psy8425 123 SCTY----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 123 ~~~i----~~d~g~y~C~~~~n~~g~~c 146 (176)
+|.| .+|+|.|+|. |.|..|..-
T Consensus 42 ~L~I~~~~~~D~G~Y~C~-A~N~~G~~~ 68 (75)
T cd05892 42 TLLIKNVNKKDAGWYTVS-AVNEAGVAT 68 (75)
T ss_pred EEEECCCChhhCEEEEEE-EEcCcCeEE
Confidence 5776 7999999999 999999653
No 221
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=96.27 E-value=0.0048 Score=35.60 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=18.9
Q ss_pred CCEEEE--eccCCeeEEEecCCcccCc
Q psy8425 121 GGSCTY--YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 121 ~~~~~i--~~d~g~y~C~~~~n~~g~~ 145 (176)
...|.| ..|+|.|+|. |.|..|..
T Consensus 37 ~~~L~i~~~~d~G~Y~C~-A~N~~G~~ 62 (69)
T cd05739 37 RNVLELTNIYESANYTCV-AISSLGMI 62 (69)
T ss_pred ccEEEEeccccCeeEEEE-EEeCCCEE
Confidence 345666 5789999999 99999863
No 222
>KOG4597|consensus
Probab=96.23 E-value=0.0062 Score=47.58 Aligned_cols=88 Identities=15% Similarity=0.122 Sum_probs=61.7
Q ss_pred EEeCCceeEEecCCcEEEEEEEeecCCCeeEEEe---CCEEeccCcceEEE--EecceEEEEEcccCCCCCEEEEEEEEc
Q psy8425 13 EVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFK---DNVEITTNKRLKIQ--FKKKRSTLIITRIRSEDAGRYECRGTG 87 (176)
Q Consensus 13 ~~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~---~g~~l~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~n 87 (176)
+..-+....+-.+++..++|.+.|.+.+.|.|.+ |+..+.......+. .-.....|.|-+....|+|-|+|.+.+
T Consensus 199 l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rc 278 (560)
T KOG4597|consen 199 LVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARC 278 (560)
T ss_pred cccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccc
Confidence 3333445567889999999999999999999965 44333221111000 003457899999999999999999999
Q ss_pred C-CCceEEEEEEEEEe
Q psy8425 88 V-HKDVVSAFAEVSIN 102 (176)
Q Consensus 88 ~-g~~~~s~~~~l~V~ 102 (176)
. |...+. +.+.+.
T Consensus 279 g~g~~~rd--v~c~s~ 292 (560)
T KOG4597|consen 279 GAGFLRRD--VPCSSV 292 (560)
T ss_pred ccceeecc--ceeeee
Confidence 9 776666 666654
No 223
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=96.20 E-value=0.0042 Score=36.01 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=21.5
Q ss_pred EEecCCEEEE----eccCCeeEEEecCCcccC
Q psy8425 117 YCLNGGSCTY----YDTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 117 ~~~~~~~~~i----~~d~g~y~C~~~~n~~g~ 144 (176)
....++.|.| .+|+|.|+|. |.|..|.
T Consensus 30 ~~~~~~~L~I~~v~~~D~G~YtC~-a~N~~g~ 60 (71)
T cd04976 30 TKKSGHSLTIKDVTEEDAGNYTVV-LTNKQAK 60 (71)
T ss_pred EEcCCCEEEECcCCHHHCEEEEEE-EEcCCcc
Confidence 3445677777 7999999999 9998875
No 224
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=96.18 E-value=0.0046 Score=36.34 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=22.1
Q ss_pred EecCCEEEE----eccCCeeEEEecCCcccCcC
Q psy8425 118 CLNGGSCTY----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 118 ~~~~~~~~i----~~d~g~y~C~~~~n~~g~~c 146 (176)
..+++.+.| ..|.|.|+|. |.|..|..-
T Consensus 37 ~~~~~~l~i~~v~~~D~G~Y~C~-A~N~~G~~~ 68 (76)
T cd05868 37 KVDGDTIIFSKVQERSSAVYQCN-ASNEYGYLL 68 (76)
T ss_pred EecCCEEEECCCCHhhCEEEEEE-EEcCCCEEE
Confidence 345667766 7899999999 999998653
No 225
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=96.17 E-value=0.0062 Score=35.30 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=20.6
Q ss_pred cCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 120 NGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 120 ~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
.+..|.| .+|+|.|+|. |.|..|..
T Consensus 32 ~~~~L~I~~v~~~D~G~YtC~-a~N~~G~~ 60 (70)
T cd05864 32 RGVHLTIYEVTEKDAGNYTVV-LTNPITKE 60 (70)
T ss_pred cCCEEEECcCCHHHCEEEEEE-EEECCCce
Confidence 4557777 7999999999 99999854
No 226
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=96.17 E-value=0.0026 Score=37.03 Aligned_cols=23 Identities=13% Similarity=0.158 Sum_probs=18.7
Q ss_pred CEEEE----eccCCeeEEEecCCcccCc
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
..|.| .+|+|.|+|. |.|..|..
T Consensus 40 ~~L~I~~~~~~D~G~Y~C~-a~N~~G~~ 66 (74)
T cd05748 40 TSLVIKNAERSDSGKYTLT-LKNPAGEK 66 (74)
T ss_pred EEEEECCCCcCcCEEEEEE-EECCCccE
Confidence 34555 7999999999 99999864
No 227
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=96.16 E-value=0.0046 Score=36.42 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=21.8
Q ss_pred cCCEEEE----eccCCeeEEEecCCcccCcCc
Q psy8425 120 NGGSCTY----YDTVGELVCQCAEGYKGQRCE 147 (176)
Q Consensus 120 ~~~~~~i----~~d~g~y~C~~~~n~~g~~c~ 147 (176)
.++.|.| .+|+|.|.|. |.|..|....
T Consensus 36 ~~~~L~I~~~~~~D~G~Y~C~-a~N~~G~~~s 66 (77)
T cd05760 36 KERTLTLRSAGPDDSGLYYCC-AHNAFGSVCS 66 (77)
T ss_pred CCCEEEEeeCCcccCEEEEEE-EEeCCCeEee
Confidence 3457777 7999999999 9999997653
No 228
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=96.15 E-value=0.038 Score=34.07 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.3
Q ss_pred CEEEE----eccCCeeEEEecCCcccCc
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
+.|.| .+|+|.|+|. |.|..|..
T Consensus 64 ~~L~I~~v~~~D~G~Y~C~-A~N~~G~~ 90 (98)
T cd05870 64 SSLHIKDVKLSDSGRYDCE-AASRIGGH 90 (98)
T ss_pred eEEEEeeCCcCCCEEEEEE-EeccCCcc
Confidence 46666 6899999999 99999964
No 229
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=96.14 E-value=0.0032 Score=36.17 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=20.4
Q ss_pred cCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 120 NGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 120 ~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
.++.|.| .+|.|.|+|. |.|..|..
T Consensus 34 ~~~~L~i~~v~~~D~G~Y~C~-a~N~~G~~ 62 (71)
T cd05731 34 FNKTLKIDNVSEEDDGEYRCT-ASNSLGSA 62 (71)
T ss_pred CCCEEEECCCCHHHCEEEEEE-EEeCCceE
Confidence 4567777 6999999999 99998853
No 230
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.13 E-value=0.0076 Score=35.01 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=22.3
Q ss_pred EEecCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 117 YCLNGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 117 ~~~~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
....+++|.| .+|+|.|.|. |.|..|..
T Consensus 35 ~~~~~~~L~i~~~~~~D~G~Y~C~-a~N~~G~~ 66 (74)
T cd05764 35 LVYDNGTLDILITTVKDTGSFTCI-ASNAAGEA 66 (74)
T ss_pred EEecCCEEEEEECChhhCEEEEEE-EECCCCeE
Confidence 3345677777 7899999999 99998853
No 231
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=96.09 E-value=0.0078 Score=35.50 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=20.1
Q ss_pred ecCCEEEEe--------ccCCeeEEEecCCcccCc
Q psy8425 119 LNGGSCTYY--------DTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 119 ~~~~~~~i~--------~d~g~y~C~~~~n~~g~~ 145 (176)
..+|++.|. .|.|.|+|. |.|..|..
T Consensus 36 ~~~g~l~i~~~~~~~~~~d~G~Y~C~-A~N~~G~~ 69 (77)
T cd05874 36 PNTGTLVINIMNGEKAEAYEGVYQCT-ARNERGAA 69 (77)
T ss_pred CCCceEEEeccccCCCCCCCEEEEEE-EEcCCCeE
Confidence 356787771 278999999 99999963
No 232
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=96.05 E-value=0.0083 Score=35.39 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=20.9
Q ss_pred ecCCEEEEe--------ccCCeeEEEecCCcccCcC
Q psy8425 119 LNGGSCTYY--------DTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 119 ~~~~~~~i~--------~d~g~y~C~~~~n~~g~~c 146 (176)
..+++|.|. +|.|.|+|. |.|..|...
T Consensus 36 ~~~~~L~i~~~~~~~~~~d~G~Y~C~-A~N~~G~~~ 70 (77)
T cd05875 36 RRSGTLVIDFSGGGRPEDYEGEYQCF-ARNNLGTAL 70 (77)
T ss_pred CCCceEEEeccCCCCCCCCCEEEEEE-EEeccceEE
Confidence 356788872 368999999 999999643
No 233
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=96.04 E-value=0.011 Score=34.81 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=21.1
Q ss_pred ecCCEEEEe--------ccCCeeEEEecCCcccCcC
Q psy8425 119 LNGGSCTYY--------DTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 119 ~~~~~~~i~--------~d~g~y~C~~~~n~~g~~c 146 (176)
..+|.|.|. +|+|.|.|. |.|..|...
T Consensus 36 ~~~g~L~i~~~~~~~~~~d~G~Y~C~-A~N~~G~~~ 70 (77)
T cd05733 36 PDSGTLVIDNMNGGRAEDYEGEYQCY-ASNELGTAI 70 (77)
T ss_pred CCCCEEEEeccCCCCCcCCCEEEEEE-EEcCCCcEE
Confidence 346788772 579999999 999999643
No 234
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=95.98 E-value=0.0053 Score=23.34 Aligned_cols=13 Identities=46% Similarity=1.395 Sum_probs=10.7
Q ss_pred EEEecCCcccCcC
Q psy8425 134 VCQCAEGYKGQRC 146 (176)
Q Consensus 134 ~C~~~~n~~g~~c 146 (176)
.|.|..||.|.+|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 4899999999987
No 235
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=95.88 E-value=0.013 Score=34.62 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=21.9
Q ss_pred ecCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 119 LNGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 119 ~~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
..+++|.| .+|+|.|.|. |.|..|..
T Consensus 41 ~~~~~L~I~~v~~~D~G~Y~C~-a~N~~G~~ 70 (79)
T cd05734 41 LSNGSLLIKHVLEEDSGYYLCK-VSNDVGAD 70 (79)
T ss_pred ecCCeEEECcCCcccCEEEEEE-EEeCCCCC
Confidence 45678887 7999999999 99999865
No 236
>PHA03270 envelope glycoprotein C; Provisional
Probab=95.87 E-value=0.098 Score=40.70 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=31.9
Q ss_pred cccCCCeEEeCCceeEEecCCcEEEEEEEeecCCC---eeEEEeCCEEecc
Q psy8425 6 RATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLP---AVSWFKDNVEITT 53 (176)
Q Consensus 6 ~v~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p---~i~W~~~g~~l~~ 53 (176)
..+.+|.+...+ ..+.+|+...-.|.+...-+| .+.||+|+.++..
T Consensus 217 ~~yr~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~ 265 (466)
T PHA03270 217 RMFRRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFA 265 (466)
T ss_pred EEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence 334455543332 246889999999998766444 6889999998864
No 237
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=95.86 E-value=0.0093 Score=35.99 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=22.7
Q ss_pred EecCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 118 CLNGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 118 ~~~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
...++.|.| .+|+|.|.|. |.|..|..
T Consensus 49 ~~~~~~L~i~~v~~~D~G~Y~C~-a~N~~G~~ 79 (88)
T cd04968 49 SMSGAVLKIPNIQFEDEGTYECE-AENIKGKD 79 (88)
T ss_pred EEeCCEEEECCCCcccCEEEEEE-EEECCCcE
Confidence 356788888 7999999999 99998874
No 238
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=95.83 E-value=0.011 Score=34.56 Aligned_cols=23 Identities=13% Similarity=0.014 Sum_probs=19.2
Q ss_pred EEEE----eccCCeeEEEecCCcccCcC
Q psy8425 123 SCTY----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 123 ~~~i----~~d~g~y~C~~~~n~~g~~c 146 (176)
.|.| .+|+|.|+|. |.|..|..-
T Consensus 42 ~L~I~~~~~~D~G~Y~C~-a~N~~G~~~ 68 (75)
T cd05744 42 CLLIQNANKEDAGWYTVS-AVNEAGVVS 68 (75)
T ss_pred EEEECCCCcccCEEEEEE-EEcCCCcEE
Confidence 4666 7999999999 999999653
No 239
>PHA03042 CD47-like protein; Provisional
Probab=95.80 E-value=0.084 Score=38.58 Aligned_cols=60 Identities=17% Similarity=0.296 Sum_probs=39.9
Q ss_pred EecCCcEEEEEEEeec-----CCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 22 VKLRQSLRLVCRCKGN-----PLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 22 v~~G~~~~l~C~~~g~-----p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
..-.+++.++|.+... ..-.+.|..++..+-..+. ....+|.+.... .-.|+|+|.|.+.
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~------tn~aSL~~~f~~-~l~GNYTCEv~~l 92 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN------TNTSSLKFNFSK-NLSGNYTCEAINK 92 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC------CcceEEEEeccc-cCCCceeEEEeec
Confidence 3457889999987642 2346899999877644222 122456655443 3379999999987
No 240
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=95.79 E-value=0.0074 Score=35.20 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=19.8
Q ss_pred eEEecCCEEEE----eccCCeeEEEecCCc
Q psy8425 116 SYCLNGGSCTY----YDTVGELVCQCAEGY 141 (176)
Q Consensus 116 ~~~~~~~~~~i----~~d~g~y~C~~~~n~ 141 (176)
.+..++++|.| .+|+|.|+|. +.|.
T Consensus 30 ~~~~~~~~L~I~~v~~~D~G~YtC~-a~~~ 58 (72)
T cd07702 30 RYHVDGYSLVIKDVTEEDAGIYTIL-LGIK 58 (72)
T ss_pred EEEeCCCEEEECcCCHHHCEEEEEE-EEcc
Confidence 44556778888 7999999999 7775
No 241
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=95.76 E-value=0.0094 Score=35.80 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=23.7
Q ss_pred eEEecCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 116 SYCLNGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 116 ~~~~~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
.....++.+.| .+|+|.|.|. |.|..|..
T Consensus 45 ~~~~~~~~L~i~~~~~~D~G~Y~C~-a~N~~G~~ 77 (85)
T cd05728 45 RIEVEAGDLRITKLSLSDSGMYQCV-AENKHGTI 77 (85)
T ss_pred eEEEeCCEEEEeeCCHHHCEEEEEE-EECCCCeE
Confidence 44556778888 7899999999 99999864
No 242
>KOG1219|consensus
Probab=95.74 E-value=0.012 Score=54.23 Aligned_cols=37 Identities=41% Similarity=1.147 Sum_probs=31.3
Q ss_pred CCCCCCeEEecCCEEEEeccCCeeEEEecCCcccCcCccc
Q psy8425 110 GPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESK 149 (176)
Q Consensus 110 ~p~p~~~~~~~~~~~~i~~d~g~y~C~~~~n~~g~~c~~~ 149 (176)
.|| ....|++||+|. .+.+.|.|.|..+++|.+|+..
T Consensus 3904 epC-~snPC~~GgtCi--p~~n~f~CnC~~gyTG~~Ce~~ 3940 (4289)
T KOG1219|consen 3904 EPC-ASNPCLTGGTCI--PFYNGFLCNCPNGYTGKRCEAR 3940 (4289)
T ss_pred ccc-cCCCCCCCCEEE--ecCCCeeEeCCCCccCceeecc
Confidence 455 456788999996 7888999999999999999876
No 243
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=95.68 E-value=0.0097 Score=36.69 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=18.9
Q ss_pred CEEEE----eccCCeeEEEecCCcccCc
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
+.|.| .+|.|.|+|. |.|..|..
T Consensus 63 ~~L~I~~v~~~D~G~Y~C~-A~N~~G~~ 89 (97)
T cd05869 63 SSLTLKYIQYTDAGEYLCT-ASNTIGQD 89 (97)
T ss_pred EEEEEecCccCcCEEEEEE-EecCCCCe
Confidence 35666 5899999999 99999964
No 244
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=95.66 E-value=0.012 Score=35.18 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=19.2
Q ss_pred CCEEEE--eccCCeeEEEecCCcccCc
Q psy8425 121 GGSCTY--YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 121 ~~~~~i--~~d~g~y~C~~~~n~~g~~ 145 (176)
++.|.| ..|+|.|.|. |.|..|..
T Consensus 48 ~s~L~i~~~~d~g~Y~C~-A~N~~G~~ 73 (81)
T cd05749 48 PSVLNVPGLNETSKFSCE-AHNAKGVT 73 (81)
T ss_pred CCEEEEccccCCeEEEEE-EEeccCcE
Confidence 345666 6789999999 99999954
No 245
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=95.60 E-value=0.0097 Score=36.06 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=19.2
Q ss_pred EEEE----eccCCeeEEEecCCcccCcC
Q psy8425 123 SCTY----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 123 ~~~i----~~d~g~y~C~~~~n~~g~~c 146 (176)
+|.| .+|+|.|+|. |.|..|..-
T Consensus 48 ~L~I~~~~~~D~G~YtC~-A~N~~G~~~ 74 (88)
T cd05735 48 TLQILPTVREDSGFFSCH-AINSYGEDR 74 (88)
T ss_pred EEEECCCCcccCEEEEEE-EEcCCCcce
Confidence 4665 6999999999 999999754
No 246
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=95.59 E-value=0.016 Score=34.23 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=22.6
Q ss_pred eEEecCCEEEE----eccCCeeEEEecCCcccC
Q psy8425 116 SYCLNGGSCTY----YDTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 116 ~~~~~~~~~~i----~~d~g~y~C~~~~n~~g~ 144 (176)
.+.+.++.|.| .+|+|.|+|. |.|..|.
T Consensus 39 ~~~~~~~~L~I~~~~~~DsG~Y~C~-a~n~~g~ 70 (79)
T cd04973 39 RTRITGEEVQIKDAVPRDSGLYACV-TSSPSGS 70 (79)
T ss_pred eEEEeCCEEEECCCChhhCEEEEEE-EeCCCCc
Confidence 44556778888 7999999999 8888776
No 247
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=95.56 E-value=0.0094 Score=36.95 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=21.6
Q ss_pred CEEEE----eccCCeeEEEecCCcccCcCcccc
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQRCESKD 150 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~~c~~~~ 150 (176)
..|.| .+|+|.|+|. +.|..|.......
T Consensus 56 s~L~I~~~~~~D~G~Ytc~-a~N~~G~~~~~~~ 87 (98)
T cd05762 56 SKLTITEGQQEHCGCYTLE-VENKLGSRQAQVN 87 (98)
T ss_pred eEEEECCCChhhCEEEEEE-EEcCCCceeEEEE
Confidence 44555 7999999999 9999997654433
No 248
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=95.56 E-value=0.0088 Score=36.54 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=21.2
Q ss_pred cCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 120 NGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 120 ~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
+++.|.| .+|+|.|.|. |.|..|..
T Consensus 53 ~~~~L~I~~v~~~D~G~Y~C~-a~N~~G~~ 81 (91)
T cd05740 53 DNRTLTFNNVTRSDTGHYQCE-ASNEVSNM 81 (91)
T ss_pred CCCEEEECcCChhhCEEEEEE-EEcCCCCE
Confidence 4567887 6999999999 99999974
No 249
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=95.56 E-value=0.012 Score=36.04 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEE----eccCCeeEEEecCCcccCcC
Q psy8425 123 SCTY----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 123 ~~~i----~~d~g~y~C~~~~n~~g~~c 146 (176)
.|.| .+|+|.|+|. |.|..|..-
T Consensus 57 ~L~I~~v~~~D~G~Y~C~-A~N~~G~~~ 83 (92)
T cd05866 57 RLTIYNANIEDAGIYRCQ-ATDAKGQTQ 83 (92)
T ss_pred EEEEecCChHHCEEEEEE-EEcCCCcEE
Confidence 6777 7899999999 999999753
No 250
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=95.44 E-value=0.021 Score=28.47 Aligned_cols=29 Identities=52% Similarity=1.288 Sum_probs=23.0
Q ss_pred EEecCCEEEEeccCCeeEEEecCCcc-cCcCc
Q psy8425 117 YCLNGGSCTYYDTVGELVCQCAEGYK-GQRCE 147 (176)
Q Consensus 117 ~~~~~~~~~i~~d~g~y~C~~~~n~~-g~~c~ 147 (176)
.+.+++.|. ...|.|.|.|..++. |.+|+
T Consensus 10 ~C~~~~~C~--~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 10 PCQNGGTCV--NTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred CcCCCCEeE--CCCCCeEeECCCCCccCCcCC
Confidence 355667775 667889999999999 98885
No 251
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=95.36 E-value=0.011 Score=35.61 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=21.1
Q ss_pred cCCEEEE----eccCCeeEEEecCCcccCcC
Q psy8425 120 NGGSCTY----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 120 ~~~~~~i----~~d~g~y~C~~~~n~~g~~c 146 (176)
+.+.|.| ..|+|.|+|. |.|..|..-
T Consensus 45 ~~~~L~I~~v~~~D~G~YtC~-A~n~~g~~~ 74 (85)
T cd05854 45 TIGDLVIVNAQLSHAGTYTCT-AQTVVDSAS 74 (85)
T ss_pred eEeEEEEccCChhhCeEEEEE-EecCCCCEE
Confidence 3467777 7899999999 999998654
No 252
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=95.33 E-value=0.018 Score=33.89 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=21.2
Q ss_pred ecCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 119 LNGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 119 ~~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
.+.+.|.| .+|+|.|.|. |.|..|..
T Consensus 44 ~~~~~L~I~~~~~~D~G~Y~C~-a~N~~G~~ 73 (81)
T cd05765 44 TNIGQLVIYNAQPQDAGLYTCT-ARNSGGLL 73 (81)
T ss_pred ccccEEEEccCCcccCEEEEEE-EecCCceE
Confidence 34567777 7999999999 99999963
No 253
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=95.33 E-value=0.011 Score=35.38 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=20.9
Q ss_pred cCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 120 NGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 120 ~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
.++.|.| ..|+|.|+|. |.|..|..
T Consensus 45 ~~~~L~I~~v~~~D~G~Y~C~-a~n~~g~~ 73 (85)
T cd04970 45 SNGDLMIRNAQLKHAGKYTCT-AQTVVDSL 73 (85)
T ss_pred ccceEEEccCCHHhCeeeEEE-EecCCCcE
Confidence 4577888 6899999999 99988864
No 254
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=95.29 E-value=0.022 Score=34.98 Aligned_cols=28 Identities=7% Similarity=0.033 Sum_probs=22.1
Q ss_pred eEEecCCEEEE----eccCCeeEEEecCCcccC
Q psy8425 116 SYCLNGGSCTY----YDTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 116 ~~~~~~~~~~i----~~d~g~y~C~~~~n~~g~ 144 (176)
++...++.|.| .+|+|.|+|. +.|..|.
T Consensus 54 r~~~~~~~L~I~~~~~~DsG~Y~C~-~~N~~g~ 85 (94)
T cd05756 54 RMHQQKDLLWFLPAALEDSGLYTCV-VRNSTYC 85 (94)
T ss_pred eeeecCCeEEEccCCcccCeEEEEE-EcCCCcc
Confidence 34445778888 7999999999 8887764
No 255
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=95.24 E-value=0.26 Score=30.01 Aligned_cols=68 Identities=15% Similarity=0.266 Sum_probs=44.2
Q ss_pred CceeEEecCCcEEEEEEEeec-----CCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEE
Q psy8425 17 LRNVSVKLRQSLRLVCRCKGN-----PLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGT 86 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~~~g~-----p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 86 (176)
++...+..|+.++..|..... ....+.|..|+..++. .+++... ...+.+++.+.....+-.|-|...
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~-~qy~~in-~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG-SQYRVIN-DTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC-GCEEEES-TTEEEEEESS--SSEEEEEEEEEC
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh-hHcceeC-CeEEEEEEccCCCCCceEEEEEEc
Confidence 455568999999999987532 4457899998886655 4433322 445788888887776667777643
No 256
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=95.23 E-value=0.018 Score=34.87 Aligned_cols=27 Identities=26% Similarity=0.344 Sum_probs=22.2
Q ss_pred ecCCEEEE----eccCCeeEEEecCCcccCcC
Q psy8425 119 LNGGSCTY----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 119 ~~~~~~~i----~~d~g~y~C~~~~n~~g~~c 146 (176)
..++.|.| .+|+|.|+|. |.|..|..-
T Consensus 44 ~~~~~L~I~~v~~~D~G~Y~C~-a~N~~G~~~ 74 (90)
T cd05726 44 SQTGDLTITNVQRSDVGYYICQ-TLNVAGSIL 74 (90)
T ss_pred CCCCeEEEeeCChhhCEEEEEE-EEcCCCceE
Confidence 34677888 7999999999 999999753
No 257
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=95.10 E-value=0.024 Score=33.78 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=22.6
Q ss_pred EecCCEEEE----eccCCeeEEEecCCcccCcC
Q psy8425 118 CLNGGSCTY----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 118 ~~~~~~~~i----~~d~g~y~C~~~~n~~g~~c 146 (176)
...++.|.| .+|+|.|.|. +.|..|..-
T Consensus 47 ~~~~~~L~I~~~~~~D~G~Y~C~-a~N~~G~~~ 78 (86)
T cd05724 47 IVDDGNLLIAEARKSDEGTYKCV-ATNMVGERE 78 (86)
T ss_pred EccCCEEEEeECCcccCEEEEEE-EEeccCcee
Confidence 344678888 7999999999 999988753
No 258
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=95.07 E-value=0.019 Score=33.42 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=22.3
Q ss_pred EEecCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 117 YCLNGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 117 ~~~~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
....++.|.| .+|+|.|+|. |.|..|..
T Consensus 36 ~~~~~~~L~i~~v~~~D~G~Y~C~-A~N~~G~~ 67 (76)
T cd04978 36 RRVDGGTLILSNVQPNDTAVYQCN-ASNVHGYL 67 (76)
T ss_pred EEccCCEEEECCCChhhCEEEEEE-EEccCCeE
Confidence 4455677777 6899999999 99998864
No 259
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=94.75 E-value=0.046 Score=26.86 Aligned_cols=29 Identities=52% Similarity=1.271 Sum_probs=22.7
Q ss_pred EEecCCEEEEeccCCeeEEEecCCcccCcCc
Q psy8425 117 YCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147 (176)
Q Consensus 117 ~~~~~~~~~i~~d~g~y~C~~~~n~~g~~c~ 147 (176)
.+.+++.|. ...|.|.|.|..++.|.+|+
T Consensus 10 ~C~~~~~C~--~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 10 PCQNGGTCV--NTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred CcCCCCEeE--CCCCCeEeECCCCCcCCcCC
Confidence 355667775 56678999999999998885
No 260
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=94.72 E-value=0.021 Score=33.07 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=16.1
Q ss_pred eccCCeeEEEecCCcccCc
Q psy8425 127 YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 127 ~~d~g~y~C~~~~n~~g~~ 145 (176)
.+|+|.|.|. |.|..|..
T Consensus 52 ~~D~G~Y~C~-a~N~~G~~ 69 (75)
T cd05750 52 LADSGEYTCV-VENILGND 69 (75)
T ss_pred cccCeEEEEE-EEEcCCce
Confidence 6999999999 99999864
No 261
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=94.71 E-value=0.017 Score=34.90 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=22.7
Q ss_pred cCCEEEE----eccCCeeEEEecCCcccCcCccc
Q psy8425 120 NGGSCTY----YDTVGELVCQCAEGYKGQRCESK 149 (176)
Q Consensus 120 ~~~~~~i----~~d~g~y~C~~~~n~~g~~c~~~ 149 (176)
+++.|.| ..|+|.|+|. |.|..+..-..+
T Consensus 45 ~~~~L~I~nv~~~dsG~YtC~-a~n~~~~~~a~a 77 (85)
T cd05853 45 SAGDLMIRSIQLKHAGKYVCM-VQTSVDKLSAAA 77 (85)
T ss_pred CCCcEEEecCCHHHCEEEEEE-EEcccCceEEEE
Confidence 4567888 7999999999 999888654333
No 262
>PHA03273 envelope glycoprotein C; Provisional
Probab=94.69 E-value=0.62 Score=36.78 Aligned_cols=79 Identities=18% Similarity=0.155 Sum_probs=46.5
Q ss_pred cCCCeEEeCCceeEEecCCcEEEEEEEeecCCC---eeEEEeCCEEeccCcce--EEEEe-----cceEEEEEcccCCC-
Q psy8425 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLP---AVSWFKDNVEITTNKRL--KIQFK-----KKRSTLIITRIRSE- 76 (176)
Q Consensus 8 ~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p---~i~W~~~g~~l~~~~~~--~~~~~-----~~~~~L~i~~v~~~- 76 (176)
+.+|.+...+ ..+.+|+...-.|.+...-+| .+.||+||.++...... ..... ...++|.+......
T Consensus 235 yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~ 312 (486)
T PHA03273 235 YNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEE 312 (486)
T ss_pred ecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCC
Confidence 4455543332 247889999999998765443 68899999998832111 11111 22345666554332
Q ss_pred CCEEEEEEEEcC
Q psy8425 77 DAGRYECRGTGV 88 (176)
Q Consensus 77 d~G~Y~C~a~n~ 88 (176)
.--..+|.+.=.
T Consensus 313 ~PP~lrC~v~W~ 324 (486)
T PHA03273 313 YTPSLRCSIEWY 324 (486)
T ss_pred CCCCceEEEEEc
Confidence 234678976643
No 263
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=94.65 E-value=0.021 Score=33.32 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=18.5
Q ss_pred CEEEE----eccCCeeEEEecCCcccCc
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
+.|.| .+|+|.|+|. +.|..|..
T Consensus 44 ~~L~I~~~~~~DsG~Y~C~-a~N~~g~~ 70 (76)
T cd05895 44 SELQISKASLADNGEYKCM-VSSKLGND 70 (76)
T ss_pred EEEEECcCCcccCEEEEEE-EEeCCCce
Confidence 44556 7999999999 99988853
No 264
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=94.54 E-value=0.02 Score=34.69 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=18.6
Q ss_pred CEEEE----eccCCeeEEEecCCcccCc
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
+.|.| .+|.|.|.|. |.|..|..
T Consensus 56 ~~L~I~~v~~~D~g~Y~C~-A~N~~G~~ 82 (90)
T cd04972 56 YNLQLSNITSETQTTVTCT-AENPVGQA 82 (90)
T ss_pred EEEEEecCCcccCEEEEEE-EECCCCce
Confidence 45565 6889999999 99999864
No 265
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=94.44 E-value=0.026 Score=34.86 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=17.8
Q ss_pred CEEEE----eccCCeeEEEecCCccc
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKG 143 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g 143 (176)
++|.| .+|+|.|+|. |.|..|
T Consensus 60 ~~L~I~~v~~~D~G~YtC~-A~N~~~ 84 (96)
T cd05865 60 STLTIYNANIDDAGIYKCV-VSNEDE 84 (96)
T ss_pred eEEEEeccChhhCEEEEEE-EEcCCC
Confidence 46777 7999999999 999874
No 266
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=94.38 E-value=0.55 Score=27.93 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=24.5
Q ss_pred CCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEE
Q psy8425 39 LPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGT 86 (176)
Q Consensus 39 ~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 86 (176)
.+.+.|...+..... ....+.......+|+|.+.|.|.
T Consensus 26 ~~~~~l~~~~~k~~~----------~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 26 KPSLFLENPGKKSLE----------TKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEEECSSCEEEE----------ESSEEEEESBTCGGSEEEEEEEE
T ss_pred ChhheeeccCccccc----------cceEEEEecCCCCCCEEEEEEEc
Confidence 346666655543322 12345566777899999999994
No 267
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=94.36 E-value=0.022 Score=34.58 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=19.7
Q ss_pred CEEEE----eccCCeeEEEecCCcccCcC
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~~c 146 (176)
+.|.| .+|+|.|+|. |.|..|..-
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~-A~N~~G~~~ 82 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCL-AGNSIGISH 82 (90)
T ss_pred eEEEEccCCHHHCEEEEEE-EEeCCCccc
Confidence 35666 7999999999 999999643
No 268
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=94.21 E-value=0.055 Score=32.81 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=22.5
Q ss_pred eEEecCCEEEE-----eccCCeeEEEecCCcccCcC
Q psy8425 116 SYCLNGGSCTY-----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 116 ~~~~~~~~~~i-----~~d~g~y~C~~~~n~~g~~c 146 (176)
.....++.+.| .+|+|.|+|. |.|..|...
T Consensus 52 ~~~~~~~~L~i~~~~~~~d~G~Y~C~-a~N~~G~~~ 86 (91)
T cd04967 52 RYSLVGGNLVISNPSKAKDAGRYQCL-ASNIVGTVL 86 (91)
T ss_pred CEEEECCEEEEecCCccCCCEEEEEE-EEcCCCEEE
Confidence 34455667777 3799999999 999999643
No 269
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=94.11 E-value=0.039 Score=33.64 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.3
Q ss_pred EEEE----eccCCeeEEEecCCcccCc
Q psy8425 123 SCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 123 ~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
.|.| .+|+|.|+|. |.|..|..
T Consensus 58 ~L~I~~v~~~D~G~Y~C~-A~N~~g~~ 83 (92)
T cd04977 58 TLTIYNANIEDAGIYKCV-ATDAKGTE 83 (92)
T ss_pred EEEEecCCcccCEEEEEE-EEcCCCCc
Confidence 5666 7999999999 99987754
No 270
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=94.05 E-value=0.038 Score=33.72 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=18.7
Q ss_pred EEEE----eccCCeeEEEecCCcccCc
Q psy8425 123 SCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 123 ~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
.|.| .+|+|.|+|. |.|..|..
T Consensus 63 ~L~I~~v~~~D~G~Y~C~-a~N~~G~~ 88 (96)
T cd05732 63 SLTLKDVQLTDAGRYDCE-ASNRIGGD 88 (96)
T ss_pred EEEECcCCcCcCEEeEEE-EEeCCCCc
Confidence 5555 6999999999 99999975
No 271
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=94.05 E-value=0.078 Score=25.53 Aligned_cols=28 Identities=50% Similarity=1.252 Sum_probs=21.1
Q ss_pred EecCCEEEEeccCCeeEEEecCCcccC-cCc
Q psy8425 118 CLNGGSCTYYDTVGELVCQCAEGYKGQ-RCE 147 (176)
Q Consensus 118 ~~~~~~~~i~~d~g~y~C~~~~n~~g~-~c~ 147 (176)
+.+++.|. ...+.|.|.|..++.|. +|+
T Consensus 8 C~~~~~C~--~~~~~~~C~C~~g~~g~~~C~ 36 (36)
T cd00053 8 CSNGGTCV--NTPGSYRCVCPPGYTGDRSCE 36 (36)
T ss_pred CCCCCEEe--cCCCCeEeECCCCCcccCCcC
Confidence 44566775 44578999999999998 664
No 272
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=93.95 E-value=0.039 Score=33.72 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=20.2
Q ss_pred cCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 120 NGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 120 ~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
++..|.| .+|.|.|.|. |.|..|..
T Consensus 56 ~~~~L~I~~v~~~D~G~Y~C~-a~N~~G~~ 84 (95)
T cd05730 56 DGSEMTILDVDKLDEAEYTCI-AENKAGEQ 84 (95)
T ss_pred CCCEEEECCCChhhCEEEEEE-EEcCCCeE
Confidence 3445777 6899999999 99999964
No 273
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=93.92 E-value=0.037 Score=33.31 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=19.0
Q ss_pred CEEEE----eccCCeeEEEecCCcccCc
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
+.|.| .+|+|.|.|. |.|..|..
T Consensus 52 ~~L~I~~~~~~D~G~Y~c~-a~N~~G~~ 78 (86)
T cd05894 52 SSFVIEGAEREDEGVYTIT-VTNPVGED 78 (86)
T ss_pred EEEEECCCccCcCEEEEEE-EEeCCCcE
Confidence 45666 7999999999 99999963
No 274
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=93.85 E-value=0.04 Score=33.72 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=20.0
Q ss_pred cCCEEEE----eccCCeeEEEecCCcccC
Q psy8425 120 NGGSCTY----YDTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 120 ~~~~~~i----~~d~g~y~C~~~~n~~g~ 144 (176)
.++.|.| .+|+|.|+|. +.|..|.
T Consensus 50 ~~~~L~I~~v~~~DsG~YtC~-~~n~~~~ 77 (92)
T cd05757 50 KGSKLLIQNVTEEDAGNYTCK-LTFTHNG 77 (92)
T ss_pred cCCEEEEeeCChhhCEEEEEE-EEecCCC
Confidence 7788888 7999999999 7777665
No 275
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=93.66 E-value=0.3 Score=28.92 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=18.8
Q ss_pred CCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 121 GGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 121 ~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
...+.| .+|+|.|+|. +.|..|..
T Consensus 50 ~~~l~i~~~~~~D~G~Y~C~-a~N~~G~~ 77 (85)
T cd05857 50 HWSLIMESVVPSDKGNYTCV-VENEYGSI 77 (85)
T ss_pred ceEEEEccCCcccCEEEEEE-EEeCCCEE
Confidence 345555 6899999999 99998863
No 276
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=93.63 E-value=0.046 Score=32.58 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=18.6
Q ss_pred CEEEE----eccCCeeEEEecCCcccCc
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
..|.| ..|+|.|.|. +.|..|..
T Consensus 49 s~L~I~~v~~~DsG~Y~C~-a~n~~~~~ 75 (84)
T cd05742 49 STLTIPNATLKDSGTYTCA-ASSGTMDQ 75 (84)
T ss_pred EEEEECCCChhhCEEEEEE-EccCCCce
Confidence 35666 7999999999 99988864
No 277
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=93.61 E-value=0.038 Score=34.46 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=19.0
Q ss_pred CEEEE----eccCCeeEEEecCCcccC
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~ 144 (176)
..|.| .+|+|.|+|. |.|..|.
T Consensus 65 ~~L~i~~v~~~D~G~Ytc~-A~N~~G~ 90 (101)
T cd04975 65 SELKLVRLKESEAGTYTFL-ASNSDAS 90 (101)
T ss_pred EEEEEeecCHhhCeeEEEE-EECCCcc
Confidence 55666 7999999999 9999995
No 278
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=93.58 E-value=0.13 Score=31.45 Aligned_cols=29 Identities=24% Similarity=0.174 Sum_probs=21.2
Q ss_pred eEEecCCEEEE---------eccCCeeEEEecCCc-ccCc
Q psy8425 116 SYCLNGGSCTY---------YDTVGELVCQCAEGY-KGQR 145 (176)
Q Consensus 116 ~~~~~~~~~~i---------~~d~g~y~C~~~~n~-~g~~ 145 (176)
...+.++.+.| ..|.|.|.|. |.|. .|..
T Consensus 48 ~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~-a~N~~~G~~ 86 (95)
T cd05722 48 RQQLPNGSLLITSVVHSKHNKPDEGFYQCV-AQNDSLGSI 86 (95)
T ss_pred eEEccCCeEEEeeeeccCCCCCcCEEEEEE-EECCccCcE
Confidence 34455666665 2689999999 8998 8864
No 279
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=93.54 E-value=0.066 Score=31.16 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=18.7
Q ss_pred EEEE----eccCCeeEEEecCCcccCcC
Q psy8425 123 SCTY----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 123 ~~~i----~~d~g~y~C~~~~n~~g~~c 146 (176)
.+.| .+|.|.|+|. +.|..|..-
T Consensus 40 ~l~I~~~~~~D~G~Y~C~-a~N~~G~~~ 66 (76)
T cd05736 40 ELHISNVRYEDTGAYTCI-AKNEAGVDE 66 (76)
T ss_pred EEEECcCCcccCEEEEEE-EEcCCCCcc
Confidence 4655 6899999999 999998643
No 280
>KOG1219|consensus
Probab=93.44 E-value=0.064 Score=49.95 Aligned_cols=43 Identities=33% Similarity=0.768 Sum_probs=36.3
Q ss_pred CCCCCCeEEecCCEEEEeccCCeeEEEecCCcccCcCcccccccc
Q psy8425 110 GPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVYNR 154 (176)
Q Consensus 110 ~p~p~~~~~~~~~~~~i~~d~g~y~C~~~~n~~g~~c~~~~~~~~ 154 (176)
.|| ....|.+||+|. ....|.|.|.|..-|.|..|+.......
T Consensus 3865 d~C-~~npCqhgG~C~-~~~~ggy~CkCpsqysG~~CEi~~epC~ 3907 (4289)
T KOG1219|consen 3865 DPC-NDNPCQHGGTCI-SQPKGGYKCKCPSQYSGNHCEIDLEPCA 3907 (4289)
T ss_pred ccc-ccCcccCCCEec-CCCCCceEEeCcccccCccccccccccc
Confidence 455 568899999998 7788999999999999999998765554
No 281
>PHA03052 Hypothetical protein; Provisional
Probab=93.43 E-value=0.26 Score=28.08 Aligned_cols=36 Identities=17% Similarity=0.388 Sum_probs=27.9
Q ss_pred CceeEEecCCcEEEEEEEeecC---CCeeEEEeCCEEec
Q psy8425 17 LRNVSVKLRQSLRLVCRCKGNP---LPAVSWFKDNVEIT 52 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~~~g~p---~p~i~W~~~g~~l~ 52 (176)
|..+.+..|+.+++.|.+.-.+ .+.+.|.-|+..+.
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 3667889999999999985332 34688999998873
No 282
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=93.39 E-value=0.086 Score=32.59 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=20.5
Q ss_pred cCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 120 NGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 120 ~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
.+|+|.| ..|+|.|+|. |.|.....
T Consensus 58 ~~G~L~fs~v~~~D~g~Y~C~-A~n~~~~~ 86 (96)
T cd05727 58 TNGNLYIAKVEASDRGNYSCF-VSSPSSTK 86 (96)
T ss_pred CCCcEEEeecCHhhCceeEEE-EEecccCC
Confidence 3689988 7999999999 88876554
No 283
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=93.37 E-value=0.035 Score=32.63 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=18.8
Q ss_pred CEEEE----eccCCeeEEEecCCcccCc
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
+.|.| .+|+|.|.|. |.|..|..
T Consensus 42 ~~L~I~~v~~~D~G~Y~C~-a~N~~G~~ 68 (78)
T cd05743 42 GTLTIRDVKESDQGAYTCE-AINTRGMV 68 (78)
T ss_pred EEEEECCCChHHCEEEEEE-EEecCCEE
Confidence 45666 6899999999 99998854
No 284
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=93.21 E-value=0.061 Score=32.18 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=19.1
Q ss_pred EEEE----eccCCeeEEEecCCcccCcCcc
Q psy8425 123 SCTY----YDTVGELVCQCAEGYKGQRCES 148 (176)
Q Consensus 123 ~~~i----~~d~g~y~C~~~~n~~g~~c~~ 148 (176)
.|.| .+|+|.|.|. +.|..+..++.
T Consensus 47 ~L~I~~~~~~DsG~Y~C~-a~n~~~~~~~~ 75 (84)
T cd05861 47 TLTFPHATVEDSGTYECA-AHESTQDQKAF 75 (84)
T ss_pred EEEECCCCcCCCEEEEEE-EEECccCccee
Confidence 5666 7999999999 88877655543
No 285
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=93.16 E-value=0.65 Score=35.40 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=24.5
Q ss_pred ccccCCCeEEeCCceeEEecCCcEEEEEEEeecCCC--eeEEEeC
Q psy8425 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLP--AVSWFKD 47 (176)
Q Consensus 5 l~v~~~p~~~~~~~~~~v~~G~~~~l~C~~~g~p~p--~i~W~~~ 47 (176)
|.-.++|....... ...+ .++|+|.|.|--+. .+.|.|+
T Consensus 198 L~R~vpP~V~Vt~k---~~~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 198 IPKPVTPTVKVTGE---ELGD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred cCCCCCCceEEecc---cCCC-CceEEEEEEeEeCCccEEEEEec
Confidence 44556666543211 1122 57999999986544 6789999
No 286
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=93.14 E-value=0.067 Score=32.49 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=18.8
Q ss_pred CEEEE----eccCCeeEEEecCCcccCc
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
+.+.| .+|+|.|.|. +.|..|..
T Consensus 59 ~~L~i~~~~~~D~G~Y~C~-a~N~~G~~ 85 (92)
T cd05747 59 STFEISKVQMSDEGNYTVV-VENSEGKQ 85 (92)
T ss_pred eEEEECCCCcccCEeEEEE-EEcCCCCE
Confidence 35555 6999999999 99999864
No 287
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=93.01 E-value=0.74 Score=35.75 Aligned_cols=71 Identities=23% Similarity=0.365 Sum_probs=48.9
Q ss_pred ceeEEecCCcEEEEEEEee--c-CCCeeEEEeCCEEecc-----------------CcceEEEE------ecceEEEEEc
Q psy8425 18 RNVSVKLRQSLRLVCRCKG--N-PLPAVSWFKDNVEITT-----------------NKRLKIQF------KKKRSTLIIT 71 (176)
Q Consensus 18 ~~~~v~~G~~~~l~C~~~g--~-p~p~i~W~~~g~~l~~-----------------~~~~~~~~------~~~~~~L~i~ 71 (176)
....+..|.++.|.|..+- + ....+.|+.-|-++.+ ++.+.+.. +..+++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 4556777999999998753 2 3346789765544331 12222221 1346899999
Q ss_pred ccCCCCCEEEEEEEEcC
Q psy8425 72 RIRSEDAGRYECRGTGV 88 (176)
Q Consensus 72 ~v~~~d~G~Y~C~a~n~ 88 (176)
++..+..|-|.|.|...
T Consensus 352 ka~I~N~GCY~~~a~~g 368 (500)
T PHA02914 352 KAHINNAGCYEAQAFMG 368 (500)
T ss_pred eEEEEcCCceEEEEecC
Confidence 99999999999999875
No 288
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=92.77 E-value=0.071 Score=31.79 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=20.9
Q ss_pred ecCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 119 LNGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 119 ~~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
..++.+.| .+|+|.|.|. |.|..|..
T Consensus 49 ~~~~~L~I~~v~~~DsG~Y~C~-a~n~~g~~ 78 (85)
T cd05754 49 DFNGILTIRNVQLSDAGTYVCT-GSNMLDTD 78 (85)
T ss_pred ccCCEEEECCCCHHHCEEEEEE-EeccCCeE
Confidence 34678888 7999999999 88887753
No 289
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=92.72 E-value=0.068 Score=31.34 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=18.0
Q ss_pred CEEEE----eccCCeeEEEecCCcccC
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~ 144 (176)
..+.| .+|+|.|.|. +.|..|.
T Consensus 48 ~~L~i~~v~~~D~G~Y~C~-a~N~~G~ 73 (82)
T cd05856 48 WTLSLKNLKPEDSGKYTCH-VSNRAGE 73 (82)
T ss_pred EEEEEccCChhhCEEEEEE-EEcCCcc
Confidence 45555 6899999999 9998885
No 290
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=92.55 E-value=0.066 Score=32.55 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=18.1
Q ss_pred EEEE----eccCCeeEEEecCCcccCc
Q psy8425 123 SCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 123 ~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
.|.| .+|+|.|+|. |.|..|..
T Consensus 59 ~L~I~~v~~~D~G~Y~C~-a~N~~G~~ 84 (92)
T cd05737 59 SLTIKGVSSEDSGKYGIV-VKNKYGGE 84 (92)
T ss_pred EEEEccCChhhCEEEEEE-EEECCCcc
Confidence 4555 6999999999 99988853
No 291
>PHA03189 UL14 tegument protein; Provisional
Probab=92.42 E-value=2.4 Score=31.81 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=40.2
Q ss_pred CceeEEecCCcEEEEEEEeec--CCCeeE-----EE----------eCCEEeccC-------cceEEEEecceEEEEEc-
Q psy8425 17 LRNVSVKLRQSLRLVCRCKGN--PLPAVS-----WF----------KDNVEITTN-------KRLKIQFKKKRSTLIIT- 71 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~~~g~--p~p~i~-----W~----------~~g~~l~~~-------~~~~~~~~~~~~~L~i~- 71 (176)
+..+.+..|+.+++.|.+... |...|. |- .+|..+..+ .++++........|++.
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 344568889999999997543 433332 21 122222221 11222111112222222
Q ss_pred ccCCCCCEEEEEEEEcC-CCce
Q psy8425 72 RIRSEDAGRYECRGTGV-HKDV 92 (176)
Q Consensus 72 ~v~~~d~G~Y~C~a~n~-g~~~ 92 (176)
++..+.+|.|.|+..|. ++..
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv 160 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLV 160 (348)
T ss_pred EEEecccceEEEEeccccceee
Confidence 35567789999999998 4433
No 292
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=92.28 E-value=0.071 Score=32.51 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=16.5
Q ss_pred eccCCeeEEEecCCcccCcC
Q psy8425 127 YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 127 ~~d~g~y~C~~~~n~~g~~c 146 (176)
.+|+|.|.|. |.|..|...
T Consensus 73 ~~D~G~Y~C~-a~N~~G~~~ 91 (100)
T cd07693 73 RSDEGVYVCV-AHNSLGEAV 91 (100)
T ss_pred cCcCEEEEEE-EEcccccee
Confidence 4799999999 999999843
No 293
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=92.18 E-value=0.31 Score=30.08 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=21.5
Q ss_pred eEEecCCEEEE----eccCC-eeEEEecCCcccCc
Q psy8425 116 SYCLNGGSCTY----YDTVG-ELVCQCAEGYKGQR 145 (176)
Q Consensus 116 ~~~~~~~~~~i----~~d~g-~y~C~~~~n~~g~~ 145 (176)
.....+|+|.| ..|+| .|.|. |.|-....
T Consensus 52 i~~~~~GnL~fs~v~~~D~g~~Y~C~-a~~~~~~~ 85 (95)
T cd05845 52 VSMGQNGNLYFANVEEQDSHPDYICH-AHFPGLRT 85 (95)
T ss_pred EEECCCceEEEEEEehhhCCCCeEEE-EEcccccc
Confidence 44456799999 79999 89999 77665443
No 294
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=92.18 E-value=0.11 Score=31.24 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=17.2
Q ss_pred CEEEE----eccCCeeEEEecCCcccC
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~ 144 (176)
..|.| ..|+|.|+|. |.|..|.
T Consensus 50 s~L~I~~~~~~DsG~Y~C~-a~n~~~~ 75 (86)
T cd05862 50 STLTIENVTLSDLGRYTCT-ASSGQMI 75 (86)
T ss_pred eEEEEecCCcccCEEEEEE-EeecceE
Confidence 35555 6999999999 8887664
No 295
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=92.14 E-value=0.21 Score=26.96 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=16.8
Q ss_pred cCCEEEE----eccCCeeEEEecCCccc
Q psy8425 120 NGGSCTY----YDTVGELVCQCAEGYKG 143 (176)
Q Consensus 120 ~~~~~~i----~~d~g~y~C~~~~n~~g 143 (176)
.+..+.| ..|.|.|.|. +.|..|
T Consensus 37 ~~~~L~i~~~~~~d~G~Y~C~-~~n~~g 63 (63)
T smart00408 37 SGSTLTIKSVSLEDSGEYTCV-AENSAG 63 (63)
T ss_pred CCcEEEEeeCCcccCEEEEEE-EecCCC
Confidence 3445655 6899999999 777654
No 296
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=92.13 E-value=0.073 Score=33.18 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=19.0
Q ss_pred CEEEE----eccCCeeEEEecCCcccCc
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
..|.| .+|+|.|+|. |.|..|..
T Consensus 65 s~L~I~~v~~~D~G~Ytc~-A~N~~g~~ 91 (101)
T cd05859 65 SKLKLIRAKEEDSGLYTAL-AQNEDAVK 91 (101)
T ss_pred cEEEEeeCCHHHCEEEEEE-EEcCCceE
Confidence 45666 7999999999 99998864
No 297
>smart00181 EGF Epidermal growth factor-like domain.
Probab=91.63 E-value=0.21 Score=24.14 Aligned_cols=23 Identities=48% Similarity=1.266 Sum_probs=18.4
Q ss_pred EEEEeccCCeeEEEecCCccc-CcCc
Q psy8425 123 SCTYYDTVGELVCQCAEGYKG-QRCE 147 (176)
Q Consensus 123 ~~~i~~d~g~y~C~~~~n~~g-~~c~ 147 (176)
.|. ...|.|.|.|..++.| ..|+
T Consensus 12 ~C~--~~~~~~~C~C~~g~~g~~~C~ 35 (35)
T smart00181 12 TCI--NTPGSYTCSCPPGYTGDKRCE 35 (35)
T ss_pred EEE--CCCCCeEeECCCCCccCCccC
Confidence 554 4578999999999999 7764
No 298
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=91.56 E-value=3.5 Score=32.20 Aligned_cols=85 Identities=18% Similarity=0.251 Sum_probs=51.8
Q ss_pred eeEEecCCcE-EEEEEEeecCCC-eeEEEeCCEEeccCcceEEEEe-------------cceEEEEEcccCCCCCEEEEE
Q psy8425 19 NVSVKLRQSL-RLVCRCKGNPLP-AVSWFKDNVEITTNKRLKIQFK-------------KKRSTLIITRIRSEDAGRYEC 83 (176)
Q Consensus 19 ~~~v~~G~~~-~l~C~~~g~p~p-~i~W~~~g~~l~~~~~~~~~~~-------------~~~~~L~i~~v~~~d~G~Y~C 83 (176)
++.+.-|+.+ .|.|.....-.. ++..+|.+..-.. .+..+... ...-.+.+.++...|.|.|.|
T Consensus 20 nIi~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~~nt-~ki~~sI~Nag~dn~CyCGd~dkeYsf~~~Nvs~sdEGrYrC 98 (500)
T PHA02914 20 NIFLRNEDEELALTCILPAAKMADKVVLIKGNDMNNT-KEIESSINNAGEDNVCYCGDPDKEYSFIEENIGEHEDGDFKC 98 (500)
T ss_pred eEEEecCceEEeeEEEcCCCccccEEEEEeccCCCCe-eEEEEeccCCCCCCccccCCCcceeEEEecCcccccCCcEEE
Confidence 5566777776 999987544333 5666663211000 00000000 123467888999999999999
Q ss_pred EEEcCCCceEEEEEEEEEecCCC
Q psy8425 84 RGTGVHKDVVSAFAEVSINLRPD 106 (176)
Q Consensus 84 ~a~n~g~~~~s~~~~l~V~~~p~ 106 (176)
...-.+...+. ..|.|...|.
T Consensus 99 IFYLn~~Etyr--H~I~vrVmPK 119 (500)
T PHA02914 99 IFYLGDNESHK--HEILVRKAPK 119 (500)
T ss_pred EEEeCCceeEE--EEEEEEEccc
Confidence 98877666666 6667766666
No 299
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=91.47 E-value=0.13 Score=31.18 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=19.1
Q ss_pred eEEecCCEEEE----eccCCeeEEEecCCc
Q psy8425 116 SYCLNGGSCTY----YDTVGELVCQCAEGY 141 (176)
Q Consensus 116 ~~~~~~~~~~i----~~d~g~y~C~~~~n~ 141 (176)
++.+.++.|.| .+|+|.|+|. +.+.
T Consensus 42 r~~~~~~~L~I~nv~~~DsG~Y~C~-a~e~ 70 (87)
T cd05873 42 KYLLYRDGLLIFNASEADAGRYQCL-SVEK 70 (87)
T ss_pred eEEEECCcEEEeCCCHHHCEEEEEE-EEec
Confidence 45566778888 7999999999 5443
No 300
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=91.31 E-value=0.3 Score=30.63 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=22.0
Q ss_pred eEEecCCEEEE----eccCCeeEEEecCCcc
Q psy8425 116 SYCLNGGSCTY----YDTVGELVCQCAEGYK 142 (176)
Q Consensus 116 ~~~~~~~~~~i----~~d~g~y~C~~~~n~~ 142 (176)
+...++..|.| .+|+|.|+|. ..|..
T Consensus 64 Ri~~~~~~Lwf~Pa~~eDSG~Y~C~-~rN~t 93 (104)
T cd05896 64 RMSKEEDSIWFRPAELQDSGLYTCV-LRNST 93 (104)
T ss_pred eEEEeCCEEEEEeCChhhCeEEEEE-ECCCC
Confidence 67778888888 7999999999 77764
No 301
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=91.27 E-value=0.11 Score=31.61 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=15.7
Q ss_pred eccCCeeEEEecCCcccCc
Q psy8425 127 YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 127 ~~d~g~y~C~~~~n~~g~~ 145 (176)
.+|+|.|.|. |.|..|..
T Consensus 67 ~~D~G~Y~C~-a~N~~G~~ 84 (92)
T cd05891 67 SEDSGKYSIN-VKNKYGGE 84 (92)
T ss_pred hhhCEEEEEE-EEeCCCce
Confidence 6899999999 99988864
No 302
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=90.97 E-value=0.17 Score=31.97 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=18.9
Q ss_pred CEEEE-----eccCCeeEEEecCCcccCc
Q psy8425 122 GSCTY-----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 122 ~~~~i-----~~d~g~y~C~~~~n~~g~~ 145 (176)
+.|.| .+|.|.|+|. |.|..|..
T Consensus 69 s~L~I~~v~~~~D~G~Y~C~-A~N~~G~~ 96 (109)
T cd05773 69 SILTIINVSAALDYALFTCT-AHNSLGED 96 (109)
T ss_pred eEEEECcCCccCCCEEEEEE-EEeCCccC
Confidence 45666 2699999999 99999986
No 303
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=90.45 E-value=2.6 Score=25.39 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=41.7
Q ss_pred cCCCeEEeCCceeEEecC----CcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEE
Q psy8425 8 TIHPIEVSGLRNVSVKLR----QSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYEC 83 (176)
Q Consensus 8 ~~~p~~~~~~~~~~v~~G----~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 83 (176)
..++.|+.+.....+... +...|...+.+. .+.+.||-||..+..... ...+.+. ....|.|+-
T Consensus 8 ~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~--------~~~~~~~---~~~~G~h~l 75 (89)
T PF06832_consen 8 GSPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQP--------GHQLFWQ---PDRPGEHTL 75 (89)
T ss_pred CCCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCC--------CCeEEeC---CCCCeeEEE
Confidence 356677766554433322 256666777666 558999999999843211 1222222 246788888
Q ss_pred EEEcC
Q psy8425 84 RGTGV 88 (176)
Q Consensus 84 ~a~n~ 88 (176)
.+...
T Consensus 76 ~vvD~ 80 (89)
T PF06832_consen 76 TVVDA 80 (89)
T ss_pred EEEcC
Confidence 88776
No 304
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=90.29 E-value=0.31 Score=29.66 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=18.9
Q ss_pred eEEecCCEEEE----eccCCeeEEEecC-Cccc
Q psy8425 116 SYCLNGGSCTY----YDTVGELVCQCAE-GYKG 143 (176)
Q Consensus 116 ~~~~~~~~~~i----~~d~g~y~C~~~~-n~~g 143 (176)
+....++.|.| .+|+|.|+|. +. +..|
T Consensus 47 r~~~~~~~L~I~~~~~~DsG~Y~C~-a~~~~~~ 78 (91)
T cd05871 47 RLIHTERGLLLRSLQRSDAGVYTCT-AVEHSFS 78 (91)
T ss_pred cEEEecCeEEEeeCChhHCEEEEEE-EEccCCe
Confidence 34455667777 7999999999 54 4433
No 305
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=89.77 E-value=0.23 Score=29.58 Aligned_cols=25 Identities=8% Similarity=0.024 Sum_probs=19.2
Q ss_pred CCEEEE----eccCCeeEEEecCCcccCcC
Q psy8425 121 GGSCTY----YDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 121 ~~~~~i----~~d~g~y~C~~~~n~~g~~c 146 (176)
+..+.| .+|+|.|.|. +.|..|+.-
T Consensus 47 ~~~l~I~~~~~~dsG~Y~C~-~~~~~~~~~ 75 (83)
T cd05753 47 NSNLSIPQATLSDSGSYHCS-GIIGSYDYS 75 (83)
T ss_pred CceEEECccCHHHCEEEEEE-EEeCCceec
Confidence 345555 6999999999 888888543
No 306
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=89.36 E-value=0.22 Score=30.62 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=16.9
Q ss_pred EEEE----eccCCeeEEEecCCcccC
Q psy8425 123 SCTY----YDTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 123 ~~~i----~~d~g~y~C~~~~n~~g~ 144 (176)
.|.| .+|+|.|.|. ++|..++
T Consensus 66 ~L~I~~l~~sDsgtY~C~-v~~~~~~ 90 (94)
T cd07690 66 PLIIKNLKIEDSDTYICE-VEDKKEE 90 (94)
T ss_pred EEEECCCCHHHCEEEEEE-ECCccce
Confidence 3666 7999999999 8887664
No 307
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=89.17 E-value=0.29 Score=30.03 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=17.3
Q ss_pred EEEE----e-ccCCeeEEEecCCcccCc
Q psy8425 123 SCTY----Y-DTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 123 ~~~i----~-~d~g~y~C~~~~n~~g~~ 145 (176)
.|.| . +|.|.|.|. |.|..|..
T Consensus 65 ~L~I~~v~~~d~~G~Y~C~-A~N~~G~~ 91 (98)
T cd05758 65 TLTISNTQESDFQTSYNCT-AWNSFGSG 91 (98)
T ss_pred EEEECCccccccceeEEEE-EEcCCCcc
Confidence 5666 3 458999999 99999974
No 308
>KOG4289|consensus
Probab=88.95 E-value=0.28 Score=44.02 Aligned_cols=33 Identities=33% Similarity=0.895 Sum_probs=28.2
Q ss_pred eEEecCCEEEEeccCCeeEEEecCCcccCcCcccc
Q psy8425 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKD 150 (176)
Q Consensus 116 ~~~~~~~~~~i~~d~g~y~C~~~~n~~g~~c~~~~ 150 (176)
..|-++|.|. .-.|.|+|+|-.+|+|+.|+.+.
T Consensus 1245 ~pC~nng~C~--srEggYtCeCrpg~tGehCEvs~ 1277 (2531)
T KOG4289|consen 1245 GPCGNNGRCR--SREGGYTCECRPGFTGEHCEVSA 1277 (2531)
T ss_pred CCCCCCCceE--EecCceeEEecCCccccceeeec
Confidence 4567889996 66799999999999999998753
No 309
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=88.56 E-value=0.35 Score=29.02 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=18.4
Q ss_pred EEecCCEEEE----eccCCeeEEEecCCcccC
Q psy8425 117 YCLNGGSCTY----YDTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 117 ~~~~~~~~~i----~~d~g~y~C~~~~n~~g~ 144 (176)
.....+.|.| .+|+|.|.|. +.+..+.
T Consensus 46 ~~~~~~~L~I~~~~~~D~G~Y~C~-a~~~~~~ 76 (89)
T cd04979 46 LLVTEDGLLIRSVSPADAGVYTCQ-SVEHGFK 76 (89)
T ss_pred EEEcCCCEEEccCCHHHCEEEEEE-EecCccc
Confidence 3334455666 6999999999 6655443
No 310
>KOG1026|consensus
Probab=88.56 E-value=0.96 Score=38.27 Aligned_cols=74 Identities=18% Similarity=0.351 Sum_probs=45.9
Q ss_pred eeEEecCCcEEEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEE
Q psy8425 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFA 97 (176)
Q Consensus 19 ~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~ 97 (176)
...+..|..+++.|...+.|.|.+.|+.++............- . .....+. .+.|.+.|. +....+ +
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c-~-~~~~~~~--------~~~c~~E~~~~~~~~~--v 268 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLC-R-SECEVLE--------NDLCIAENAVARSNPS--I 268 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccc-c-ccceeee--------chhhHHHHhhhhcCce--e
Confidence 3457789999999999999999999998776655422111000 0 0011111 178988888 665555 5
Q ss_pred EEEEecC
Q psy8425 98 EVSINLR 104 (176)
Q Consensus 98 ~l~V~~~ 104 (176)
.+.+..+
T Consensus 269 ~~~~~~p 275 (774)
T KOG1026|consen 269 LLVVDLP 275 (774)
T ss_pred eeEEecc
Confidence 5555443
No 311
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=87.96 E-value=0.22 Score=29.74 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=15.2
Q ss_pred eccCCeeEEEecCCcccCc
Q psy8425 127 YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 127 ~~d~g~y~C~~~~n~~g~~ 145 (176)
.+|.|.|.|. +.|..|..
T Consensus 65 ~~D~G~Y~C~-~~n~~g~~ 82 (90)
T PF07679_consen 65 REDAGTYTCV-ASNSSGEA 82 (90)
T ss_dssp GGGSEEEEEE-EEETTEEE
T ss_pred hhhCEEEEEE-EEECCCEE
Confidence 7999999999 88887753
No 312
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=87.75 E-value=0.32 Score=29.98 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=16.8
Q ss_pred CCEEEE----eccCCeeEEEecCCcccC
Q psy8425 121 GGSCTY----YDTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 121 ~~~~~i----~~d~g~y~C~~~~n~~g~ 144 (176)
+..|.| .+|+|.|+|+ +.+-.|.
T Consensus 54 ~~~L~I~~v~~~D~G~YtC~-~~~~~~g 80 (95)
T cd05897 54 STYLHIIDVSLNDSGYYTCK-LQFTHEG 80 (95)
T ss_pred CCEEEEEEcChhhCEEEEEE-EEEeeCC
Confidence 345666 7999999999 6665543
No 313
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=86.50 E-value=5.5 Score=24.34 Aligned_cols=81 Identities=11% Similarity=0.123 Sum_probs=47.1
Q ss_pred EeCCceeEEecCCcEEEEEEEeecCCCeeEEEeCC--EEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcCCC-
Q psy8425 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDN--VEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVHK- 90 (176)
Q Consensus 14 ~~~~~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~g--~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~g~- 90 (176)
...|+...+..|+++.+.|..+-..+..+.|--.- ..+..+ ..=..+.+.+++. | ..-.|.+.-.|.
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g--------~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q 76 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSG--------PQWKAFQLSNVTE-D-SSPLCFFNCSGEQ 76 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEE--------TTEEEEEEEEE-S-C-EEEEEEEEETTEE
T ss_pred EEECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCC--------CcEEEEEEEcccc-C-CeEEEEEEcCCeE
Confidence 34567788999999999999753332244553211 111111 2234577788875 4 566798887643
Q ss_pred ceEEEEEEEEEecCCC
Q psy8425 91 DVVSAFAEVSINLRPD 106 (176)
Q Consensus 91 ~~~s~~~~l~V~~~p~ 106 (176)
...+ +.|+|..+|+
T Consensus 77 ~~~~--~~ItVY~~Pe 90 (91)
T PF03921_consen 77 SSAS--ANITVYKPPE 90 (91)
T ss_dssp EEEE--EEEEEEB--S
T ss_pred EEeE--EeeEEeCCCC
Confidence 2334 8888887764
No 314
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=85.92 E-value=0.65 Score=28.82 Aligned_cols=24 Identities=13% Similarity=0.422 Sum_probs=17.5
Q ss_pred cCCEEEE----eccCCeeEEEecCCcccC
Q psy8425 120 NGGSCTY----YDTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 120 ~~~~~~i----~~d~g~y~C~~~~n~~g~ 144 (176)
.++++.| .+|.|.|.|. ..++...
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~-v~t~P~g 88 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICE-FATFPTG 88 (99)
T ss_pred CcceEEEcCCccccCEEEEEE-EEeCCCC
Confidence 3445555 6899999999 7776554
No 315
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=85.56 E-value=0.79 Score=27.46 Aligned_cols=27 Identities=19% Similarity=0.147 Sum_probs=19.3
Q ss_pred EecCCEEEE----eccCCeeEEEecCCcccCc
Q psy8425 118 CLNGGSCTY----YDTVGELVCQCAEGYKGQR 145 (176)
Q Consensus 118 ~~~~~~~~i----~~d~g~y~C~~~~n~~g~~ 145 (176)
...+++|.| .+|+|.|.|. .....|..
T Consensus 53 ~~~~~sL~I~~l~~~DsG~Y~c~-v~~~~~~~ 83 (92)
T cd05741 53 IYPNGSLLIQNLTKEDSGTYTLQ-IISTNGVT 83 (92)
T ss_pred EcCCceEEEccCCchhcEEEEEE-EEcCCCcE
Confidence 345588888 8999999999 44443443
No 316
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=85.29 E-value=0.8 Score=20.48 Aligned_cols=12 Identities=33% Similarity=0.963 Sum_probs=9.9
Q ss_pred eeEEEecCCccc
Q psy8425 132 ELVCQCAEGYKG 143 (176)
Q Consensus 132 ~y~C~~~~n~~g 143 (176)
.|.|.|..||.-
T Consensus 1 sy~C~C~~Gy~l 12 (24)
T PF12662_consen 1 SYTCSCPPGYQL 12 (24)
T ss_pred CEEeeCCCCCcC
Confidence 388999999873
No 317
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=84.28 E-value=0.79 Score=28.07 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=15.5
Q ss_pred CEEEE----eccCCeeEEEecCCccc
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKG 143 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g 143 (176)
.+|.| .+|+|.|.|. +.+..+
T Consensus 62 ~sL~I~~v~~~DsG~Y~C~-~~t~~~ 86 (95)
T cd07701 62 LSISISDVSLSDEGQYTCS-LFTMPV 86 (95)
T ss_pred EEEEECcCCcccCEEEEEE-eEeecC
Confidence 45666 7999999999 555433
No 318
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=84.01 E-value=0.89 Score=28.09 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=17.2
Q ss_pred CCEEEE----eccCCeeEEEecCCcccC
Q psy8425 121 GGSCTY----YDTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 121 ~~~~~i----~~d~g~y~C~~~~n~~g~ 144 (176)
+.++.| .+|+|.|.|. ..++.+.
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~-v~~~p~g 89 (100)
T cd05888 63 DGALILRNAVQADEGKYKCR-VITFPAG 89 (100)
T ss_pred ceEEEEecCccccceEEEEE-EEeCCCC
Confidence 456666 7999999999 6665544
No 319
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=83.90 E-value=1 Score=21.69 Aligned_cols=27 Identities=33% Similarity=0.899 Sum_probs=20.2
Q ss_pred eEEecCCEEEEeccCCeeEEEecCCcccCcC
Q psy8425 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRC 146 (176)
Q Consensus 116 ~~~~~~~~~~i~~d~g~y~C~~~~n~~g~~c 146 (176)
..+.+.|+|. .+ ...|.|..+|.|..|
T Consensus 6 ~~C~~~G~C~--~~--~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 6 NICSGHGTCV--SP--CGRCVCDSGYTGPDC 32 (32)
T ss_pred CccCCCCEEe--CC--CCEEECCCCCcCCCC
Confidence 3566778885 22 567999999999876
No 320
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=83.89 E-value=1.4 Score=22.47 Aligned_cols=23 Identities=39% Similarity=1.119 Sum_probs=18.1
Q ss_pred EecCCEEEEeccCCeeEEEecCCcc
Q psy8425 118 CLNGGSCTYYDTVGELVCQCAEGYK 142 (176)
Q Consensus 118 ~~~~~~~~i~~d~g~y~C~~~~n~~ 142 (176)
+..++.|. .-.|.|.|.|..||.
T Consensus 12 C~~~~~C~--N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 12 CPENGTCV--NTEGSYSCSCPPGYE 34 (42)
T ss_dssp SSTTSEEE--EETTEEEEEESTTEE
T ss_pred CCCCCEEE--cCCCCEEeeCCCCcE
Confidence 34456664 778999999999997
No 321
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=83.27 E-value=4.1 Score=23.03 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=14.5
Q ss_pred EecCCcEEEEEEEeecCCCeeEEEe
Q psy8425 22 VKLRQSLRLVCRCKGNPLPAVSWFK 46 (176)
Q Consensus 22 v~~G~~~~l~C~~~g~p~p~i~W~~ 46 (176)
+..|++++| .|.+...+.|++
T Consensus 2 v~~G~N~TL----~Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTL----VGPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEE----eCCCCCceEEEE
Confidence 456888777 355556799984
No 322
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=82.64 E-value=1.7 Score=27.25 Aligned_cols=26 Identities=15% Similarity=-0.006 Sum_probs=20.1
Q ss_pred CeEEecCCEEEE----eccCCeeEEEecCCc
Q psy8425 115 DSYCLNGGSCTY----YDTVGELVCQCAEGY 141 (176)
Q Consensus 115 ~~~~~~~~~~~i----~~d~g~y~C~~~~n~ 141 (176)
......+|+|.| .+|+|.|.|. ..+.
T Consensus 63 R~~~~~ngSL~I~~v~~~D~G~Y~~~-v~~~ 92 (105)
T cd05774 63 RETIYPNGSLLIQNVTQKDTGFYTLQ-TITT 92 (105)
T ss_pred cEEEeCCCcEEEecCCcccCEEEEEE-EEeC
Confidence 345667899999 7999999998 4443
No 323
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=82.10 E-value=1.3 Score=27.40 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=13.8
Q ss_pred cCCeeEEEecCCcccCc
Q psy8425 129 TVGELVCQCAEGYKGQR 145 (176)
Q Consensus 129 d~g~y~C~~~~n~~g~~ 145 (176)
+.|.|.|. |.|..|..
T Consensus 76 ~~g~Y~C~-a~N~~G~d 91 (98)
T cd05898 76 FQTHYNCT-AWNSFGSG 91 (98)
T ss_pred CCcEEEEE-EEeCCccc
Confidence 37899999 99999975
No 324
>PHA03269 envelope glycoprotein C; Provisional
Probab=80.15 E-value=30 Score=28.06 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=26.8
Q ss_pred EEecCCcEEEEEEEeecCCC---eeEEEeCCEEecc
Q psy8425 21 SVKLRQSLRLVCRCKGNPLP---AVSWFKDNVEITT 53 (176)
Q Consensus 21 ~v~~G~~~~l~C~~~g~p~p---~i~W~~~g~~l~~ 53 (176)
.+.+|+...-.|.+...-+| .+.||+||.++..
T Consensus 338 PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 338 PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 47889999999998766443 6889999988874
No 325
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=80.02 E-value=1.4 Score=21.77 Aligned_cols=23 Identities=39% Similarity=0.998 Sum_probs=15.5
Q ss_pred cCCEEEEeccCCeeEEEecCCcccC
Q psy8425 120 NGGSCTYYDTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 120 ~~~~~~i~~d~g~y~C~~~~n~~g~ 144 (176)
.+..|. ...+.|.|.|..||.|.
T Consensus 10 ~nA~C~--~~~~~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 10 PNATCT--NTGGSYTCTCKPGYEGD 32 (36)
T ss_dssp TTCEEE--E-TTSEEEEE-CEEECC
T ss_pred CCcEee--cCCCCEEeECCCCCccC
Confidence 445564 44558999999999985
No 326
>PHA03271 envelope glycoprotein C; Provisional
Probab=79.51 E-value=29 Score=27.54 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=40.9
Q ss_pred EEecCCcEEEEEEEeecCCC---eeEEEeCCEEeccCcceEEEE---e-----cceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 21 SVKLRQSLRLVCRCKGNPLP---AVSWFKDNVEITTNKRLKIQF---K-----KKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 21 ~v~~G~~~~l~C~~~g~p~p---~i~W~~~g~~l~~~~~~~~~~---~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
.+.+|+...-.|.+...-+| .++||+||.++.......... . ...++|.+.+...+.--..+|.+.=.
T Consensus 256 PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~ 334 (490)
T PHA03271 256 PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWK 334 (490)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEc
Confidence 46789999999998776444 688999998876532111111 0 12244545443222334778977644
No 327
>PHA03282 envelope glycoprotein E; Provisional
Probab=78.43 E-value=7.2 Score=31.19 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.6
Q ss_pred ceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 64 KRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 64 ~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
.+.+|.|.+++.+|+|.|.-.+...
T Consensus 122 ~n~tl~l~~a~~~DsG~Y~L~~~~~ 146 (540)
T PHA03282 122 VNGTLVLREARETDSGMYVLSVSRA 146 (540)
T ss_pred ecceEEEeeccccCCceEEEEecCC
Confidence 3667999999999999999987655
No 328
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=78.28 E-value=1.9 Score=27.59 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=15.7
Q ss_pred CEEEE----eccCCeeEEEecCCccc
Q psy8425 122 GSCTY----YDTVGELVCQCAEGYKG 143 (176)
Q Consensus 122 ~~~~i----~~d~g~y~C~~~~n~~g 143 (176)
.++.| .+|.|.|.|. ..|..+
T Consensus 80 aSI~I~nv~~sD~G~Y~C~-v~n~p~ 104 (116)
T cd05879 80 GSIVIHNLDYTDNGTFTCD-VKNPPD 104 (116)
T ss_pred eEEEEccCCcccCEEEEEE-EEcCCC
Confidence 44555 7999999999 666654
No 329
>PHA03283 envelope glycoprotein E; Provisional
Probab=73.94 E-value=12 Score=30.38 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=33.6
Q ss_pred cceEEEEEcccCCCCCEEEEEEEEcCCCceEEEEEEEEEecCCCCCCC
Q psy8425 63 KKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGG 110 (176)
Q Consensus 63 ~~~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~s~~~~l~V~~~p~~~g~ 110 (176)
...+.|.|.++..+++|.|+-...+.+. .....+.|.|+.++.....
T Consensus 131 ~~~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~ 177 (542)
T PHA03283 131 PERSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQT 177 (542)
T ss_pred CCCCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCC
Confidence 3457899999999999999999988743 3333367778775444433
No 330
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=71.73 E-value=14 Score=22.79 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=32.6
Q ss_pred EEEEEE-EeecCCCeeEEEe--CCEE-ec--cCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 28 LRLVCR-CKGNPLPAVSWFK--DNVE-IT--TNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 28 ~~l~C~-~~g~p~p~i~W~~--~g~~-l~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
+.-.|. +.|.|+..|.|.- +|.. .. ...+-.. .-.+.+.+-.....|.-.-+|.+...
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~---TV~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTV---TVISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCE---EEEEEEEEeECHHHcCCEeEEEEEec
Confidence 445798 6788999999975 2321 00 0000001 11234444455566667889998876
No 331
>PHA03240 envelope glycoprotein M; Provisional
Probab=71.34 E-value=8.1 Score=27.52 Aligned_cols=64 Identities=25% Similarity=0.290 Sum_probs=39.2
Q ss_pred eeEEecCCcEEEEEEEeecCCCeeEEEe-------C-C---EEec---c--Cc----------ceEEEEecceEEEEEcc
Q psy8425 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFK-------D-N---VEIT---T--NK----------RLKIQFKKKRSTLIITR 72 (176)
Q Consensus 19 ~~~v~~G~~~~l~C~~~g~p~p~i~W~~-------~-g---~~l~---~--~~----------~~~~~~~~~~~~L~i~~ 72 (176)
.+.+.+|+.|+|--.---.|.-.+.|++ + | .++. + .. ...+.+.=.+++|.|.+
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~ 111 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH 111 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence 4567889999985432223556889998 1 1 1111 1 00 11122223567899999
Q ss_pred cCCCCCEEEE
Q psy8425 73 IRSEDAGRYE 82 (176)
Q Consensus 73 v~~~d~G~Y~ 82 (176)
+..+|.|+|.
T Consensus 112 vn~sd~~nYc 121 (258)
T PHA03240 112 LNLSDAGEYC 121 (258)
T ss_pred EeecCcchhh
Confidence 9999999985
No 332
>KOG4289|consensus
Probab=70.42 E-value=5 Score=36.81 Aligned_cols=49 Identities=27% Similarity=0.630 Sum_probs=35.0
Q ss_pred CCeEEecCCEEEEeccCCeeEEEecCCcccCcCcccccccccccccceeee
Q psy8425 114 LDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVYNRSSMYKPYFSW 164 (176)
Q Consensus 114 ~~~~~~~~~~~~i~~d~g~y~C~~~~n~~g~~c~~~~~~~~~~~~~p~~~~ 164 (176)
+...|.++|+|. +-=|.|.|.|+.++.|..|+...+--..-+....++|
T Consensus 1505 dsg~C~n~g~Cv--nrWg~~~C~CP~~fggk~c~~~m~~pq~frG~sl~sw 1553 (2531)
T KOG4289|consen 1505 DSGQCSNGGTCV--NRWGGFSCECPLGFGGKGCCQGMAHPQHFRGHSLVSW 1553 (2531)
T ss_pred CCCccCCCCeee--cccCcEeecCccccCCcchhhccCCchhccccceeee
Confidence 346778899996 7778999999999999999876544333333333433
No 333
>KOG1214|consensus
Probab=70.27 E-value=14 Score=32.11 Aligned_cols=38 Identities=21% Similarity=0.527 Sum_probs=26.3
Q ss_pred CCCCCCCCC-eEEecCCEEEEe-ccCCeeEEEecCCcccC
Q psy8425 107 NMGGPCPLD-SYCLNGGSCTYY-DTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 107 ~~g~p~p~~-~~~~~~~~~~i~-~d~g~y~C~~~~n~~g~ 144 (176)
+..+||-+. ..|.-+|.+.+. ...++|.|.|-.||.|.
T Consensus 781 ap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGD 820 (1289)
T KOG1214|consen 781 APANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGD 820 (1289)
T ss_pred CCCCccccCccccCcCCceEEEecCCceEEEeecCCccCC
Confidence 445666443 566667777774 44569999999999883
No 334
>KOG0613|consensus
Probab=69.64 E-value=3.4 Score=36.86 Aligned_cols=78 Identities=6% Similarity=-0.066 Sum_probs=57.1
Q ss_pred CceeEEecCCcEEEEEEEeecCCCe-eEEEeCCEEeccCc--ceEEEEecceEEEEEcccCCCCCEEEEEEEEcC-CCce
Q psy8425 17 LRNVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNK--RLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV-HKDV 92 (176)
Q Consensus 17 ~~~~~v~~G~~~~l~C~~~g~p~p~-i~W~~~g~~l~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~ 92 (176)
..++....+..+.+.|...+.+.|. +.|++++....... .+.+........+.|..+...+.+.|.|.|.|. |...
T Consensus 341 ~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~ 420 (1205)
T KOG0613|consen 341 NLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQ 420 (1205)
T ss_pred cceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCccc
Confidence 4456677788899999999999886 99999776555432 122222244567888999999999999999999 5554
Q ss_pred EE
Q psy8425 93 VS 94 (176)
Q Consensus 93 ~s 94 (176)
..
T Consensus 421 ~~ 422 (1205)
T KOG0613|consen 421 TI 422 (1205)
T ss_pred cc
Confidence 44
No 335
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=69.00 E-value=16 Score=20.81 Aligned_cols=58 Identities=17% Similarity=0.397 Sum_probs=32.4
Q ss_pred EEEEEEeecCCCeeEEEeCCEEeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcCCCceEEEEEEEEEecCC
Q psy8425 29 RLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105 (176)
Q Consensus 29 ~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~s~~~~l~V~~~p 105 (176)
+|.|... ....+.||-||..+-. ....++.+..+ .++++|+-+.. ..++ +.+.-...|
T Consensus 2 tltC~s~--~sLPiswYcN~TRLlR---------lt~~Tlt~~~l----tcNFtCV~qSG--h~hS--iWItW~~qP 59 (71)
T PF11049_consen 2 TLTCPSN--ASLPISWYCNGTRLLR---------LTQQTLTVVTL----TCNFTCVGQSG--HRHS--IWITWYAQP 59 (71)
T ss_pred ceecCCC--CCCcccEEECCceeee---------ecCCeEeeeee----eEEeeecCCCC--CCce--EEEEEcCch
Confidence 4666543 2334789999876543 12234554333 58889975543 3445 666655444
No 336
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=64.39 E-value=5.2 Score=19.77 Aligned_cols=17 Identities=41% Similarity=0.856 Sum_probs=11.8
Q ss_pred ccCCeeEEEecCCcccC
Q psy8425 128 DTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 128 ~d~g~y~C~~~~n~~g~ 144 (176)
...|.|.|.|+.+|.-.
T Consensus 14 ~~~g~~~C~C~~Gy~L~ 30 (36)
T PF14670_consen 14 NTPGSYRCSCPPGYKLA 30 (36)
T ss_dssp EETTSEEEE-STTEEE-
T ss_pred cCCCceEeECCCCCEEC
Confidence 34678999999998654
No 337
>KOG1480|consensus
Probab=63.82 E-value=3.1 Score=35.28 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=22.6
Q ss_pred eccCCeeEEEecCCcccCcCcccccccc
Q psy8425 127 YDTVGELVCQCAEGYKGQRCESKDVYNR 154 (176)
Q Consensus 127 ~~d~g~y~C~~~~n~~g~~c~~~~~~~~ 154 (176)
+.|.|.|+|. ++|..+.+-.+...+++
T Consensus 192 lsd~~nytc~-a~ni~~~r~~~~~~v~v 218 (909)
T KOG1480|consen 192 LSDSGNYTCE-ATNIVAKRKSDPATVQV 218 (909)
T ss_pred hhhcccceee-eehhhccccccceEEEE
Confidence 7899999999 99999988777655555
No 338
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=61.64 E-value=17 Score=18.12 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=12.6
Q ss_pred eccCCeeEEEecCCccc
Q psy8425 127 YDTVGELVCQCAEGYKG 143 (176)
Q Consensus 127 ~~d~g~y~C~~~~n~~g 143 (176)
..+.|.+.|.|--||..
T Consensus 15 ~~~dG~eecrCllgyk~ 31 (37)
T PF12946_consen 15 RYDDGSEECRCLLGYKK 31 (37)
T ss_dssp EETTSEEEEEE-TTEEE
T ss_pred EcCCCCEEEEeeCCccc
Confidence 36779999999888753
No 339
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=61.00 E-value=3.6 Score=21.65 Aligned_cols=18 Identities=33% Similarity=0.839 Sum_probs=14.5
Q ss_pred CeeEEEecCCcccCcCcc
Q psy8425 131 GELVCQCAEGYKGQRCES 148 (176)
Q Consensus 131 g~y~C~~~~n~~g~~c~~ 148 (176)
....|.|..|+.|.+|+.
T Consensus 16 ~~G~C~C~~~~~G~~C~~ 33 (49)
T PF00053_consen 16 STGQCVCKPGTTGPRCDQ 33 (49)
T ss_dssp TCEEESBSTTEESTTS-E
T ss_pred CCCEEeccccccCCcCcC
Confidence 456799999999999985
No 340
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=58.28 E-value=66 Score=23.06 Aligned_cols=79 Identities=19% Similarity=0.313 Sum_probs=41.3
Q ss_pred EEEEEeecCCC--eeEEEeCCEEeccCcceEEEEe---cceEEEEEcccCC--CCCE--EEEEEEEcC--CCceEEEEEE
Q psy8425 30 LVCRCKGNPLP--AVSWFKDNVEITTNKRLKIQFK---KKRSTLIITRIRS--EDAG--RYECRGTGV--HKDVVSAFAE 98 (176)
Q Consensus 30 l~C~~~g~p~p--~i~W~~~g~~l~~~~~~~~~~~---~~~~~L~i~~v~~--~d~G--~Y~C~a~n~--g~~~~s~~~~ 98 (176)
..|.+.-.|.. .+.|+-++........ ..... ...+...|.+... ...| .|+|....- +-...+ ..
T Consensus 94 AVC~A~CVP~~~v~l~W~v~d~~~~~~~~-~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~GYP~~~p~f~--~~ 170 (211)
T PF02124_consen 94 AVCTARCVPRGNVTLRWSVGDDPSPAPAA-TEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLIGYPDILPVFE--DT 170 (211)
T ss_pred EEEEcceeeCCCeEEEEEECCccCCCCCc-eeecCcccCCcceeEeecccCCCccCCceeEEEEEeeCCCCCCccc--ce
Confidence 45887777754 6889987765322111 11111 2223444444432 2345 899988754 333333 44
Q ss_pred EEEecCCCCCCCC
Q psy8425 99 VSINLRPDNMGGP 111 (176)
Q Consensus 99 l~V~~~p~~~g~p 111 (176)
......|...|.|
T Consensus 171 ~~yDasP~~~~~p 183 (211)
T PF02124_consen 171 ATYDASPSAQGFP 183 (211)
T ss_pred EEEcCCCccCCCc
Confidence 5555566666666
No 341
>PHA03376 BARF1; Provisional
Probab=54.79 E-value=12 Score=26.35 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=20.5
Q ss_pred CCcEEEEEEEeecCCCeeEEEeCCE
Q psy8425 25 RQSLRLVCRCKGNPLPAVSWFKDNV 49 (176)
Q Consensus 25 G~~~~l~C~~~g~p~p~i~W~~~g~ 49 (176)
-+..++.|.+-|.|.|.+.|+.+..
T Consensus 139 ~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 139 FSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred CCeeEEEEecCCcCCchheeccccC
Confidence 4566889998889999999998643
No 342
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=52.91 E-value=41 Score=27.06 Aligned_cols=32 Identities=13% Similarity=-0.085 Sum_probs=22.4
Q ss_pred cceEEEEEcccCCCCCEEEEEEEEcCCCceEE
Q psy8425 63 KKRSTLIITRIRSEDAGRYECRGTGVHKDVVS 94 (176)
Q Consensus 63 ~~~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~s 94 (176)
...-.|.+.++...++|.|.|++...|....-
T Consensus 266 ~~~~~l~f~~a~~~~sGLYv~V~~~nghv~aW 297 (439)
T PF02480_consen 266 SNGVDLQFTNAPESASGLYVFVVYYNGHVEAW 297 (439)
T ss_dssp TTSSSEEESS--GGG-EEEEEEEEETTEEEEE
T ss_pred CCCcceEecCCCcccCceEEEEEEECCeeeee
Confidence 44557999999999999999999877554443
No 343
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=51.34 E-value=50 Score=22.57 Aligned_cols=26 Identities=31% Similarity=0.157 Sum_probs=21.4
Q ss_pred ceEEEEEcccCCCCCEEEEEEEEcCC
Q psy8425 64 KRSTLIITRIRSEDAGRYECRGTGVH 89 (176)
Q Consensus 64 ~~~~L~i~~v~~~d~G~Y~C~a~n~g 89 (176)
..--|.|.+.+.+|+|.|.-.+.-.+
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEECC
Confidence 33459999999999999998887663
No 344
>KOG0613|consensus
Probab=51.01 E-value=15 Score=33.11 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=17.9
Q ss_pred EeecCCCeeEEEeCCEEeccCcceE
Q psy8425 34 CKGNPLPAVSWFKDNVEITTNKRLK 58 (176)
Q Consensus 34 ~~g~p~p~i~W~~~g~~l~~~~~~~ 58 (176)
..|.|.+...|+++|..+..+....
T Consensus 213 s~gqp~~~~~~~~~g~~i~~~~~~~ 237 (1205)
T KOG0613|consen 213 SAGQPEPLERWEILGELIAPGSAPS 237 (1205)
T ss_pred ecCCCccchhhhhcccccCCCCccc
Confidence 4568888889999888776644333
No 345
>COG5475 Uncharacterized small protein [Function unknown]
Probab=49.42 E-value=44 Score=18.33 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=14.8
Q ss_pred EEEEcccCCCCCEEEEEEEEcC-CC
Q psy8425 67 TLIITRIRSEDAGRYECRGTGV-HK 90 (176)
Q Consensus 67 ~L~i~~v~~~d~G~Y~C~a~n~-g~ 90 (176)
.+++...+ ..|.|.|...+. +.
T Consensus 19 ~Mtvs~~s--s~Gmy~C~Wf~g~g~ 41 (60)
T COG5475 19 RMTVSGYS--SDGMYECRWFDGYGV 41 (60)
T ss_pred eEEEeccc--cCCeEEEEEecCCCc
Confidence 44444443 339999999998 53
No 346
>PHA03282 envelope glycoprotein E; Provisional
Probab=48.88 E-value=45 Score=26.98 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=25.2
Q ss_pred cceEEEEEcccCCCCCEEEEEEEEcCCCceEE
Q psy8425 63 KKRSTLIITRIRSEDAGRYECRGTGVHKDVVS 94 (176)
Q Consensus 63 ~~~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~s 94 (176)
.++..|.+.++...++|.|.|++...|....-
T Consensus 330 ~n~VdL~F~nAp~saSGLYVfVl~yNGHVeAW 361 (540)
T PHA03282 330 GHTVNLQLRDASEASGGLYVCVVYVNGHVHAW 361 (540)
T ss_pred CCccceEecCCCcccCceEEEEEEECCeeeee
Confidence 34458999999999999999999877554443
No 347
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=45.99 E-value=17 Score=18.80 Aligned_cols=14 Identities=36% Similarity=1.158 Sum_probs=12.6
Q ss_pred EEEecCCcccCcCc
Q psy8425 134 VCQCAEGYKGQRCE 147 (176)
Q Consensus 134 ~C~~~~n~~g~~c~ 147 (176)
+|.|..|+.|.+|+
T Consensus 19 ~C~C~~~~~G~~C~ 32 (46)
T smart00180 19 QCECKPNVTGRRCD 32 (46)
T ss_pred EEECCCCCCCCCCC
Confidence 58889999999997
No 348
>PHA03290 envelope glycoprotein I; Provisional
Probab=44.35 E-value=71 Score=24.62 Aligned_cols=41 Identities=22% Similarity=0.149 Sum_probs=28.1
Q ss_pred ceEEEEEcccCCCCCEEEEEEEEcCCCceEEEEEEEEEecCC
Q psy8425 64 KRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105 (176)
Q Consensus 64 ~~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~s~~~~l~V~~~p 105 (176)
..--|.|.+.+.+|+|.|.-++.-.|..... .+.+.+...|
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~sD-vF~lsv~Vyp 167 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLDHSRLFD-GFFLGLNVYP 167 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeCCCcccc-eEEEEEEEec
Confidence 3456999999999999999998877433221 1555555433
No 349
>KOG3611|consensus
Probab=44.05 E-value=50 Score=28.51 Aligned_cols=58 Identities=22% Similarity=0.467 Sum_probs=35.5
Q ss_pred cEEEEEEEeecCCCeeEEEeC--C--E--EeccCcceEEEEecceEEEEEcccCCCCCEEEEEEEEcC
Q psy8425 27 SLRLVCRCKGNPLPAVSWFKD--N--V--EITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88 (176)
Q Consensus 27 ~~~l~C~~~g~p~p~i~W~~~--g--~--~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 88 (176)
...|.|...+.-.+ +.|+.. + . ++........ ...+.+.+..++..|.|.|.|.+...
T Consensus 571 ~~~l~c~~~~~~a~-~~w~~~~~~~~~~~~~~~~~~~~~---~~~G~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 571 SEVLRCVPSSNQAP-VVWYHQSTKDGRKEEVRQRDVVSR---TDEGGLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred cceeeccccccccc-eeeEeeccCccccceeccCcceee---cccCceeEEEEeeccCcccccccccC
Confidence 46777876554443 788742 1 1 2222222111 23345788889999999999999877
No 350
>PHA03112 IL-18 binding protein; Provisional
Probab=42.04 E-value=1e+02 Score=20.54 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=20.1
Q ss_pred EecCCcEEEEEEEeec-CC-CeeEEEeCC
Q psy8425 22 VKLRQSLRLVCRCKGN-PL-PAVSWFKDN 48 (176)
Q Consensus 22 v~~G~~~~l~C~~~g~-p~-p~i~W~~~g 48 (176)
..+++.+.|+|.+-+. |. ..+.|..++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 4568999999998755 44 357799654
No 351
>KOG3514|consensus
Probab=41.81 E-value=15 Score=32.74 Aligned_cols=34 Identities=32% Similarity=0.995 Sum_probs=26.5
Q ss_pred CCeEEecCCEEEEeccCCeeEEEe-cCCcccCcCccc
Q psy8425 114 LDSYCLNGGSCTYYDTVGELVCQC-AEGYKGQRCESK 149 (176)
Q Consensus 114 ~~~~~~~~~~~~i~~d~g~y~C~~-~~n~~g~~c~~~ 149 (176)
+...|.|+|.|. +.-..|.|.| +.||.|..|+..
T Consensus 627 ~~nPC~N~g~C~--egwNrfiCDCs~T~~~G~~CerE 661 (1591)
T KOG3514|consen 627 ESNPCQNGGKCS--EGWNRFICDCSGTGFEGRTCERE 661 (1591)
T ss_pred CCCcccCCCCcc--ccccccccccccCcccCccccce
Confidence 456788999995 6666777765 689999999875
No 352
>PHA03286 envelope glycoprotein E; Provisional
Probab=41.52 E-value=68 Score=25.85 Aligned_cols=28 Identities=14% Similarity=0.161 Sum_probs=23.4
Q ss_pred EEEEcccCCCCCEEEEEEEEcCCCceEE
Q psy8425 67 TLIITRIRSEDAGRYECRGTGVHKDVVS 94 (176)
Q Consensus 67 ~L~i~~v~~~d~G~Y~C~a~n~g~~~~s 94 (176)
.|.+.++..+++|.|.|++.-.|....-
T Consensus 308 nL~f~nA~~s~SGLYVfVl~yNGH~eAW 335 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVALYNGRPLAW 335 (492)
T ss_pred ceeecCCCcccCceEEEEEEECCcceee
Confidence 6899999999999999999877555544
No 353
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=39.48 E-value=9.8 Score=30.46 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=0.0
Q ss_pred cceEEEEEcccCCCCCEEEEEEEEcCCCceEEEEEEEEEec
Q psy8425 63 KKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINL 103 (176)
Q Consensus 63 ~~~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~s~~~~l~V~~ 103 (176)
...+.|.|.+++.+|+|.|+-...+.+...+...+.|.|..
T Consensus 86 ~~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 86 FNKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp -----------------------------------------
T ss_pred ecCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 34467999999999999999998877333333225566654
No 354
>PHA03292 envelope glycoprotein I; Provisional
Probab=39.39 E-value=1.1e+02 Score=24.03 Aligned_cols=38 Identities=24% Similarity=0.128 Sum_probs=27.2
Q ss_pred ceEEEEEcccCCCCCEEEEEEEEcCCC-ceEEEEEEEEEec
Q psy8425 64 KRSTLIITRIRSEDAGRYECRGTGVHK-DVVSAFAEVSINL 103 (176)
Q Consensus 64 ~~~~L~i~~v~~~d~G~Y~C~a~n~g~-~~~s~~~~l~V~~ 103 (176)
...-|.|.+.+.+|+|.|.-++.-.|. ...- +.|.+.+
T Consensus 126 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~aDv--F~lsvfV 164 (413)
T PHA03292 126 TNVLLNITGPQPADSGAYILRVKLDHAPTADV--FGLSAFV 164 (413)
T ss_pred cceEEEeCCCCcccceeEEEEEEeCCCccCce--eEEEEEE
Confidence 345799999999999999999887733 3233 4555543
No 355
>PHA03286 envelope glycoprotein E; Provisional
Probab=38.49 E-value=1e+02 Score=24.85 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=29.1
Q ss_pred ceEEEEEcccCCCCCEEEEEEEEcC-CCceEEEEEEEEEe
Q psy8425 64 KRSTLIITRIRSEDAGRYECRGTGV-HKDVVSAFAEVSIN 102 (176)
Q Consensus 64 ~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s~~~~l~V~ 102 (176)
..+.|.|.++..+++|.|+-...|. +....+ .+.|.|.
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~-vflVtV~ 163 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMD-VLVVWVS 163 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEE-EEEEEEe
Confidence 3468999999999999999999987 443333 3667775
No 356
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=35.02 E-value=35 Score=17.93 Aligned_cols=15 Identities=33% Similarity=0.966 Sum_probs=13.0
Q ss_pred eEEEecCCcccCcCc
Q psy8425 133 LVCQCAEGYKGQRCE 147 (176)
Q Consensus 133 y~C~~~~n~~g~~c~ 147 (176)
-+|.|..|+.|.+|+
T Consensus 19 G~C~C~~~~~G~~C~ 33 (50)
T cd00055 19 GQCECKPNTTGRRCD 33 (50)
T ss_pred CEEeCCCcCCCCCCC
Confidence 358889999999997
No 357
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=32.04 E-value=1e+02 Score=17.44 Aligned_cols=51 Identities=10% Similarity=0.182 Sum_probs=29.2
Q ss_pred eeEEEeCCEEeccCcceEEEEe-cceEEEEEcccCCCCCEEEEEEEEcC-CCceEE
Q psy8425 41 AVSWFKDNVEITTNKRLKIQFK-KKRSTLIITRIRSEDAGRYECRGTGV-HKDVVS 94 (176)
Q Consensus 41 ~i~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~s 94 (176)
...|++++..+.. +.+... ..=.+..-........|.+...+... |.....
T Consensus 8 ~H~W~~~g~~~~~---i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~ 60 (66)
T PF11141_consen 8 YHRWYKNGKLVAR---IPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGS 60 (66)
T ss_pred EEEEEECCEEEEE---EEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEE
Confidence 3569999986643 111111 11122222334447889999998887 776655
No 358
>KOG3743|consensus
Probab=31.61 E-value=47 Score=27.30 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=20.8
Q ss_pred eEEecCCcEEEEEEEeecCCCeeEEEe
Q psy8425 20 VSVKLRQSLRLVCRCKGNPLPAVSWFK 46 (176)
Q Consensus 20 ~~v~~G~~~~l~C~~~g~p~p~i~W~~ 46 (176)
..+.-|..|.|.|.+.|...|.+.-.|
T Consensus 378 g~i~ygsvV~LV~~vTG~~lppLIIRK 404 (622)
T KOG3743|consen 378 GYIKYGSVVKLVCSVTGITLPPLIIRK 404 (622)
T ss_pred cceeeccEEEEEeecccccCCcceeee
Confidence 456779999999999998877655444
No 359
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=31.28 E-value=37 Score=18.56 Aligned_cols=21 Identities=33% Similarity=0.757 Sum_probs=13.2
Q ss_pred CCeeEEEecCCcccCcCcccc
Q psy8425 130 VGELVCQCAEGYKGQRCESKD 150 (176)
Q Consensus 130 ~g~y~C~~~~n~~g~~c~~~~ 150 (176)
.|.-.|+|-+-|.|+.|+...
T Consensus 33 dG~p~CECn~Cy~GpdCS~~~ 53 (56)
T PF04863_consen 33 DGSPVCECNSCYGGPDCSTLI 53 (56)
T ss_dssp TTEE--EE-TTEESTTS-EE-
T ss_pred cCCccccccCCcCCCCcccCC
Confidence 456789999999999997543
No 360
>PHA03289 envelope glycoprotein I; Provisional
Probab=30.07 E-value=1.5e+02 Score=22.77 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=26.6
Q ss_pred eEEEEEcccCCCCCEEEEEEEEcCCCceEEEEEEEEEec
Q psy8425 65 RSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINL 103 (176)
Q Consensus 65 ~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~s~~~~l~V~~ 103 (176)
+--|.|.+.+.+|+|.|.-++.-.|..... .+.+.+..
T Consensus 121 gvLL~I~~Pr~~DSGiYyLRV~Ldga~~sD-vF~lsv~V 158 (352)
T PHA03289 121 GLLLTIIEPRMSDTGIYYIRVSLAGRNKSD-IFRTSVFV 158 (352)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCccCc-eEEEEEEE
Confidence 457899999999999999998877332221 14555543
No 361
>PHA03283 envelope glycoprotein E; Provisional
Probab=29.89 E-value=1.5e+02 Score=24.49 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=24.6
Q ss_pred cceEEEEEcccCCCCCEEEEEEEEcCCCceE
Q psy8425 63 KKRSTLIITRIRSEDAGRYECRGTGVHKDVV 93 (176)
Q Consensus 63 ~~~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~ 93 (176)
.++-.|.+.++...++|.|.|++.-.|....
T Consensus 312 ~~~v~L~f~nap~~~SGLYVfVv~yNgHveA 342 (542)
T PHA03283 312 QNRVDLLFKNAPASASGLYVFVLLYNGHPEA 342 (542)
T ss_pred CCCcceEeccCCcccCceEEEEEEECCeeee
Confidence 3446799999999999999999887654443
No 362
>PHA03291 envelope glycoprotein I; Provisional
Probab=28.23 E-value=1.8e+02 Score=22.76 Aligned_cols=38 Identities=13% Similarity=-0.006 Sum_probs=26.8
Q ss_pred ceEEEEEcccCCCCCEEEEEEEEcCCCceEEEEEEEEEe
Q psy8425 64 KRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSIN 102 (176)
Q Consensus 64 ~~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~s~~~~l~V~ 102 (176)
..--|.|.+.+.+|+|.|.-.+.-.+....+. +.|.+.
T Consensus 127 ~~vLL~i~~P~~~DsGiYvLRV~vdgat~adl-F~lg~~ 164 (401)
T PHA03291 127 RQPLLRARGAARAVVGLYVLRVWVEGATNASL-FPLGLA 164 (401)
T ss_pred cceEEEecCCCcccceeEEEEEEeCCCcccce-EEEeee
Confidence 34568999999999999999988773333221 455555
No 363
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=27.00 E-value=46 Score=23.72 Aligned_cols=18 Identities=39% Similarity=0.816 Sum_probs=15.1
Q ss_pred eccCCeeEEEecCCcccC
Q psy8425 127 YDTVGELVCQCAEGYKGQ 144 (176)
Q Consensus 127 ~~d~g~y~C~~~~n~~g~ 144 (176)
....|.|.|.|..||...
T Consensus 202 ~~~~g~~~c~c~~g~~~~ 219 (224)
T cd01475 202 ISTPGSYLCACTEGYALL 219 (224)
T ss_pred EcCCCCEEeECCCCccCC
Confidence 477899999999998763
No 364
>KOG3516|consensus
Probab=25.01 E-value=57 Score=29.64 Aligned_cols=36 Identities=36% Similarity=1.031 Sum_probs=0.0
Q ss_pred CCCCCeEEecCCEEEEeccCCeeEEEec-CCcccCcCccc
Q psy8425 111 PCPLDSYCLNGGSCTYYDTVGELVCQCA-EGYKGQRCESK 149 (176)
Q Consensus 111 p~p~~~~~~~~~~~~i~~d~g~y~C~~~-~n~~g~~c~~~ 149 (176)
+| .+..|.+||.|. ..-..|.|.|. +||.|..|..+
T Consensus 547 rC-lPN~CehgG~C~--Qs~~~f~C~C~~TGY~GatCHts 583 (1306)
T KOG3516|consen 547 RC-LPNPCEHGGKCS--QSWDDFECNCELTGYKGATCHTS 583 (1306)
T ss_pred cc-CCccccCCCccc--ccccceeEeccccccccccccCC
No 365
>PHA03281 envelope glycoprotein E; Provisional
Probab=24.49 E-value=1.9e+02 Score=24.16 Aligned_cols=32 Identities=13% Similarity=-0.119 Sum_probs=25.1
Q ss_pred cceEEEEEcccCCCCCEEEEEEEEcCCCceEE
Q psy8425 63 KKRSTLIITRIRSEDAGRYECRGTGVHKDVVS 94 (176)
Q Consensus 63 ~~~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~s 94 (176)
.....|.+.++...++|.|.|++.-.|....-
T Consensus 472 ~n~vdL~F~nApasaSGLYVfVl~yNGHVeAW 503 (642)
T PHA03281 472 DGGSALKFVDAAESLSGLYVFIIHFNGHVEAV 503 (642)
T ss_pred CCCcceEeccCCcccCceEEEEEEECCeeeee
Confidence 34556899999999999999999877554443
No 366
>smart00051 DSL delta serrate ligand.
Probab=24.38 E-value=48 Score=18.60 Aligned_cols=12 Identities=42% Similarity=0.985 Sum_probs=8.6
Q ss_pred EEecCCcccCcC
Q psy8425 135 CQCAEGYKGQRC 146 (176)
Q Consensus 135 C~~~~n~~g~~c 146 (176)
|.|..|+.|..|
T Consensus 52 ~~C~~Gw~G~~C 63 (63)
T smart00051 52 KGCLEGWMGPYC 63 (63)
T ss_pred EecCCCCcCCCC
Confidence 445788888876
No 367
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=23.34 E-value=59 Score=18.28 Aligned_cols=15 Identities=40% Similarity=1.008 Sum_probs=7.1
Q ss_pred CCeeEEEecCCcccCcC
Q psy8425 130 VGELVCQCAEGYKGQRC 146 (176)
Q Consensus 130 ~g~y~C~~~~n~~g~~c 146 (176)
.|...| ..|+.|+.|
T Consensus 49 ~G~~~C--~~Gw~G~~C 63 (63)
T PF01414_consen 49 NGNKVC--LPGWTGPNC 63 (63)
T ss_dssp S--EEE---TTEESTTS
T ss_pred CCCCCC--CCCCcCCCC
Confidence 344444 566777665
No 368
>PHA03269 envelope glycoprotein C; Provisional
Probab=22.99 E-value=3.6e+02 Score=22.30 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=28.8
Q ss_pred eEEEEEcccCCCCCEEEEEEEEcC--CCceEEEEEEEEEecCCC
Q psy8425 65 RSTLIITRIRSEDAGRYECRGTGV--HKDVVSAFAEVSINLRPD 106 (176)
Q Consensus 65 ~~~L~i~~v~~~d~G~Y~C~a~n~--g~~~~s~~~~l~V~~~p~ 106 (176)
...|.|.++...++|.|.-.+.+. +.......++|.+..+|.
T Consensus 288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~Ps 331 (566)
T PHA03269 288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPN 331 (566)
T ss_pred ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCC
Confidence 356999999999999999776543 333333336676666665
No 369
>KOG3512|consensus
Probab=22.99 E-value=95 Score=25.30 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=19.9
Q ss_pred eccCCeeEEEecCCcccCcCcccc
Q psy8425 127 YDTVGELVCQCAEGYKGQRCESKD 150 (176)
Q Consensus 127 ~~d~g~y~C~~~~n~~g~~c~~~~ 150 (176)
.+.++.++|.|-.|-.|+.|..=.
T Consensus 289 ~d~~~~ltCdC~HNTaGPdCgrCK 312 (592)
T KOG3512|consen 289 MDESSHLTCDCEHNTAGPDCGRCK 312 (592)
T ss_pred eccCCceEEecccCCCCCCccccc
Confidence 566778999999999999997543
No 370
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=21.11 E-value=49 Score=16.26 Aligned_cols=10 Identities=30% Similarity=0.786 Sum_probs=8.3
Q ss_pred EeccCCeeEE
Q psy8425 126 YYDTVGELVC 135 (176)
Q Consensus 126 i~~d~g~y~C 135 (176)
...+.|.|.|
T Consensus 19 ~~~~dG~~yC 28 (36)
T PF11781_consen 19 FYSDDGFYYC 28 (36)
T ss_pred eEccCCEEEh
Confidence 3678899999
Done!