RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8425
(176 letters)
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 85.5 bits (212), Expect = 2e-22
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
+ + V+ +S+ L + G +W K +I ++ +K++ + S L I
Sbjct: 11 IQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAA 70
Query: 74 RSEDAGRYECR-----GTGVHKDVVSAFAEVSINLRPD 106
R E G Y G+ A +++ +PD
Sbjct: 71 RQEHCGCYTLLVENKLGS------RQAQVNLTVVDKPD 102
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 85.1 bits (211), Expect = 3e-22
Identities = 20/80 (25%), Positives = 41/80 (51%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK 64
+ T+ ++ R+++V +S R C G P+P V+W + ++T+ R ++ K
Sbjct: 9 SKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKY 68
Query: 65 RSTLIITRIRSEDAGRYECR 84
+ST I+ +++ D G Y
Sbjct: 69 KSTFEISSVQASDEGNYSVV 88
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 80.8 bits (200), Expect = 1e-20
Identities = 15/71 (21%), Positives = 29/71 (40%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
+R+ V Q+ R + + P V W+ + VE+ + ++ TL I
Sbjct: 12 TLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDC 71
Query: 74 RSEDAGRYECR 84
++D+G Y
Sbjct: 72 HTDDSGTYRAV 82
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 83.2 bits (206), Expect = 1e-20
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
+++V+ KL ++ +L C+ G PLP + W++ E+ +++ K+ + TL +
Sbjct: 11 RKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTE 70
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
ED G Y C T V +++ + P
Sbjct: 71 EQEDEGVYTCIATNEV-GEVETSSKLLLQATPQ 102
Score = 71.6 bits (176), Expect = 3e-16
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI-RSE 76
+ +LRL G P+PA++WF + ++ + I+ + + L++ + R
Sbjct: 111 EKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKT 170
Query: 77 DAGRYECRGTGVHKDVVSAFAEVSI 101
AG+Y+ + + V V A +V I
Sbjct: 171 HAGKYKVQLSNVF-GTVDAILDVEI 194
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 80.4 bits (199), Expect = 1e-20
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
V+GL++ +V + + G P P W KD IT + K+ K L I +
Sbjct: 10 VTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKT 69
Query: 74 RSEDAGRYECR 84
+ D+G Y C
Sbjct: 70 DTSDSGLYTCT 80
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 80.5 bits (199), Expect = 2e-20
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
+ R V V L C G P P V W K ++ ++RL L++T
Sbjct: 17 LRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAA 76
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
DAG Y CR A A V++ P
Sbjct: 77 LPTDAGVYVCRARNAA-GEAYAAAAVTVLEPP 107
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 82.1 bits (203), Expect = 3e-20
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P V L++++V+ +RL R G P P V +++D EI ++ +I + +L+I
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLI 163
Query: 71 TRIRSEDAGRYECR 84
ED+G Y
Sbjct: 164 AEAYPEDSGTYSVN 177
Score = 73.6 bits (181), Expect = 6e-17
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKR--LKIQFKKKRSTLIIT 71
L++V V + G P+P VSWF+D I+T+ ++I F R+ L I
Sbjct: 9 TQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIP 68
Query: 72 RIRSEDAGRYECRGTGVHKDVVSAFAEVSI 101
+ ++GRY + T ++ AE+ +
Sbjct: 69 AVTKANSGRYSLKATNGS-GQATSTAELLV 97
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 81.4 bits (201), Expect = 6e-20
Identities = 22/93 (23%), Positives = 35/93 (37%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
L V + + +S C G P + +I + +R+ +Q + RS L I
Sbjct: 6 TISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNA 65
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
EDAG Y C+ T A + I +
Sbjct: 66 NIEDAGIYRCQATDAKGQTQEATVVLEIYQKLT 98
Score = 67.1 bits (164), Expect = 1e-14
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
+ K + +VCR +P PAVSW N E+TT + + L I
Sbjct: 97 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM-LANNNLQI 155
Query: 71 TRIRSEDAGRYECRGT 86
I D G Y C G
Sbjct: 156 LNINKSDEGIYRCEGR 171
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 77.7 bits (192), Expect = 2e-19
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNK--RLKIQFKKKRSTLIIT 71
+ ++S+ + L + C G P P V+W +I + + R I+ +TLII
Sbjct: 9 EALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIM 68
Query: 72 RIRSEDAGRYECR 84
++ +D G Y
Sbjct: 69 DVQKQDGGLYTLS 81
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 77.9 bits (192), Expect = 2e-19
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 6/104 (5%)
Query: 2 SKGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQF 61
S G + + SG V+ + + L C P V W KD E+ + L +Q
Sbjct: 5 SSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQK 63
Query: 62 KKKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
+ L++ ++ ED+G Y C SA V++ P
Sbjct: 64 EDTVRRLVLPAVQLEDSGEYLCEIDD-----ESASFTVTVTEPP 102
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 77.4 bits (191), Expect = 2e-19
Identities = 12/71 (16%), Positives = 27/71 (38%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
++ R + +K + L G P P +W + L + K +++
Sbjct: 6 LTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSA 65
Query: 74 RSEDAGRYECR 84
+ D+G Y+ +
Sbjct: 66 KRADSGNYKLK 76
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 77.4 bits (191), Expect = 2e-19
Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 7/97 (7%)
Query: 11 PIE-VSGLRNVSVKLRQSLRLVCR-CKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTL 68
+ L+ + V +S C + W + ++ R + + ++ L
Sbjct: 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYIL 67
Query: 69 IITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
++ DAG G +++ A + + R
Sbjct: 68 VVREAAPSDAGEVVFSVRG-----LTSKASLIVRERS 99
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 79.9 bits (197), Expect = 3e-19
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITT---NKRLKIQFKKKRST 67
P G + V+ ++ ++C GNP P ++WFKD + + T N R+K +
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGA 168
Query: 68 LIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
L I + D G+YEC T SA A + +
Sbjct: 169 LQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207
Score = 66.4 bits (162), Expect = 4e-14
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 13/105 (12%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR-STLIITR 72
+ + +C+ G+P P + W K +++ + I+F S L I
Sbjct: 10 TRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQP 69
Query: 73 IRS-EDAGRYECR-----GTGVHKDVVSAFAEVSINLRPDNMGGP 111
+R+ D YEC G +S +++ G
Sbjct: 70 LRTPRDEAIYECVASNNVGE------ISVSTRLTVLREDQIPRGF 108
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 76.6 bits (189), Expect = 4e-19
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
+ L + V + + L C P V W KD I +++ + + + L+I
Sbjct: 12 IKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGA 70
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
+DAG Y C + A + + +
Sbjct: 71 SLKDAGEYTCEVEA-----SKSTASLHVEEKAS 98
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 76.6 bits (189), Expect = 6e-19
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
L N + + +S+ + C GNP P + WFKDN + + I K L I R+
Sbjct: 14 TGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG--IVLKDGNRNLTIRRV 71
Query: 74 RSEDAGRYECR 84
R ED G Y C+
Sbjct: 72 RKEDEGLYTCQ 82
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 79.1 bits (195), Expect = 7e-19
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKK-KRSTLI 69
+ V+++ ++L L C G+P P VSW K+ + ++F+ + +
Sbjct: 118 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFT 177
Query: 70 ITRIRSEDAGRYECR 84
I + + D+G+Y
Sbjct: 178 INGVSTADSGKYGLV 192
Score = 68.7 bits (168), Expect = 5e-15
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 26 QSLRLVCRCK-GNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
+ ++L V+W + I + R+K ++ L I D G+Y
Sbjct: 18 EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVME 77
Query: 85 GTGVHKDVVSAFAEVSINLRPD 106
K ++S +
Sbjct: 78 LFDG-KTGHQKTVDLSGQAYDE 98
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 80.2 bits (198), Expect = 9e-19
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
+V + L +S C G ++W KDN EI K+ + +TL + ++
Sbjct: 9 DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKV 68
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
DAG+Y C + V S A++ + P
Sbjct: 69 TKGDAGQYTCYASNVA-GKDSCSAQLGVQEPP 99
Score = 80.2 bits (198), Expect = 9e-19
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P+ V + L C +G P VSW KD E+ + K+ KI + +++ I
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI 252
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSI 101
+ S D G Y+C+ + + +++
Sbjct: 253 LNVDSADIGEYQCKASNDV-GSYTCVGSITL 282
Score = 74.4 bits (183), Expect = 1e-16
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDA 78
+ VK + R C+ G+P V W+KD EI + + ++ F + + L + + ED+
Sbjct: 108 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS 167
Query: 79 GRYECRGTGVHKDVVSAFAEVSINLRPD 106
G Y C S+ + + P
Sbjct: 168 GDYTCEAHNAA-GSASSSTSLKVKEPPV 194
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 75.5 bits (186), Expect = 2e-18
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKK-KRSTLIITR 72
+ L +V V+ S CR V WF D + N+ +I + L + +
Sbjct: 17 IEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQ 76
Query: 73 IRSEDAGRYECR 84
+ +D+G
Sbjct: 77 LALKDSGTIYFE 88
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 75.4 bits (186), Expect = 2e-18
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
L+++ V + L C P V W N + + ++ + L++ +
Sbjct: 12 QEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNL 70
Query: 74 RSEDAGRYECR-GTGVHKDVVSAFAEVSINLRPD 106
R +D+GRY C G + A +++ P
Sbjct: 71 RPQDSGRYSCSFGD------QTTSATLTVTALPS 98
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 75.1 bits (185), Expect = 2e-18
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
++ L + +V L + + L C N W K+ + + + RLK+ K + L+I
Sbjct: 11 LTPLTDQTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLKVVQKGRIHKLVIANA 68
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDN 107
+ED G Y + V+ A+V + P +
Sbjct: 69 LTEDEGDYVFAPDAYN---VTLPAKVHVISGPSS 99
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 75.1 bits (185), Expect = 2e-18
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK-RSTLIITR 72
+ N+S+ + R+ + G P P VSW+ + + ++ K+ +K +LI
Sbjct: 9 IQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEV 68
Query: 73 IRSEDAGRYECR 84
+R+ DAG Y C
Sbjct: 69 VRASDAGAYACV 80
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 75.1 bits (185), Expect = 2e-18
Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 2 SKGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQF 61
S G +H + +++ + + L C +W+KD ++ ++ L ++
Sbjct: 2 SSGSSGPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKM 60
Query: 62 KKKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSIN 102
++ LI+ + +D+G +ECR G VSAF V++
Sbjct: 61 DGRKHRLILPEAKVQDSGEFECRTEG-----VSAFFGVTVQ 96
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 74.6 bits (184), Expect = 2e-18
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 2/84 (2%)
Query: 7 ATIHPIE-VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR 65
+ IE L V V + ++ P W + + +I K+
Sbjct: 1 GAMALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKK 59
Query: 66 STLIITRIRSEDAGRYECRGTGVH 89
LI+ + G +
Sbjct: 60 HILILHNCQLGMTGEVSFQAANTK 83
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 80.6 bits (199), Expect = 2e-18
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P +V + L +S C G ++W KDN EI K+ + +TL +
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 257
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
++ DAG+Y C + V S A++ + P
Sbjct: 258 LKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPP 291
Score = 78.3 bits (193), Expect = 1e-17
Identities = 19/74 (25%), Positives = 40/74 (54%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P + L +V + + + L C+ G P ++W+K++ ++ + K+QFK ++L+I
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 71 TRIRSEDAGRYECR 84
++ D G Y C+
Sbjct: 66 NKVDHSDVGEYTCK 79
Score = 78.3 bits (193), Expect = 2e-17
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P L++V L + CR G+ VSW+KD + + L+ F +TL I
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQI 161
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
+ G+Y C + S+ A+++++
Sbjct: 162 LQTDQSHVGQYNCSASNPL-GTASSSAKLTLSEHE 195
Score = 77.2 bits (190), Expect = 3e-17
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P+ V + L C +G P VSW KD E+ + K+ KI + +++ I
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI 444
Query: 71 TRIRSEDAGRYECRGT---GVHKDVVSAFAEVSINLRP 105
+ S D G Y+C+ + G + +++ P
Sbjct: 445 LNVDSADIGEYQCKASNDVG----SDTCVGSITLKAPP 478
Score = 72.5 bits (178), Expect = 1e-15
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
+ VK + R C+ G+P V W+KD EI + + ++ F + + L + + ED
Sbjct: 299 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 358
Query: 78 AGRYECRGTGVHKDVVSAFAEVSINLRP 105
+G Y C S+ + + P
Sbjct: 359 SGDYTCEAHNAAGS-ASSSTSLKVKEPP 385
Score = 72.1 bits (177), Expect = 2e-15
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTN-KRLKIQFKKKRSTLIITR 72
V L ++S + + ++L +G +V+WFKD EI + I + + +TL +R
Sbjct: 481 VKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSR 540
Query: 73 IRSEDAGRYECRGTGVHKDVVSAFAEVSI 101
+AG+Y C+ FA +S+
Sbjct: 541 AEPANAGKYTCQIKNEA-GTQECFATLSV 568
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 74.6 bits (184), Expect = 2e-18
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK-RSTLIITR 72
+++ +V R G P P W+K+ V+I + R+ + + L+I
Sbjct: 9 FERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRD 68
Query: 73 IRSEDAGRYECR 84
+ ED+ +
Sbjct: 69 VTGEDSASIMVK 80
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 74.8 bits (184), Expect = 3e-18
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
E R V + S L C V+W+KD +++++ +++++ L++
Sbjct: 12 AKEQPAHREVQAEAGASATLSCE-VAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 71 TRIRSEDAGRYECR 84
+ +AG Y C
Sbjct: 71 QQAGQAEAGEYSCE 84
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 78.3 bits (193), Expect = 5e-18
Identities = 22/92 (23%), Positives = 35/92 (38%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
L V + + +S C G P + +I + +R+ +Q + RS L I
Sbjct: 8 TISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNA 67
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
EDAG Y C+ T A + I +
Sbjct: 68 NIEDAGIYRCQATDAKGQTQEATVVLEIYQKL 99
Score = 72.9 bits (179), Expect = 4e-16
Identities = 34/159 (21%), Positives = 49/159 (30%), Gaps = 26/159 (16%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
+ K + +VCR +P PAVSW N E+TT + L I I
Sbjct: 102 REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQILNI 160
Query: 74 RSEDAGRYECRGT-GVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCTYYDTVGE 132
D G Y C G ++ V +N+ P ++ G T
Sbjct: 161 NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT------- 213
Query: 133 LVCQCAEGYKGQRCESKDVYNRSSMYKPYFSWIKGTVQI 171
C+ A G +P SW + I
Sbjct: 214 FSCR-ASGSP----------------EPAISWFRNGKLI 235
Score = 72.2 bits (177), Expect = 8e-16
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
N + + + + CR G+P PA+SWF++ I N++ K + L +
Sbjct: 195 ISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK--YILKGSNTELTV 252
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
I + D G Y CR T A + + ++
Sbjct: 253 RNIINSDGGPYVCRATNKA-GEDEKQAFLQVFVQH 286
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 79.4 bits (195), Expect = 7e-18
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P L N + + +S+ + C GNP P + WFKDN + + I K L I
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG--IVLKDGNRNLTI 724
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
R+R ED G Y C+ V A I +
Sbjct: 725 RRVRKEDEGLYTCQACSVL-GCAKVEAFFIIEGAQE 759
Score = 75.2 bits (184), Expect = 2e-16
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
V + + +R+ + G P P + W+K+ + + +N +K L I
Sbjct: 331 AFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKA-----GHVLTI 385
Query: 71 TRIRSEDAGRYECRGT-GVHKDVVSAFAEVSINLRP 105
+ D G Y T + K+ S + + + P
Sbjct: 386 MEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPP 421
Score = 59.0 bits (142), Expect = 7e-11
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 11/111 (9%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAV--SWFKDNVEITTNKRLKIQFK 62
+ I+ + +S + + + + L L C + + +W + + K + K
Sbjct: 219 VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278
Query: 63 KK--------RSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
+ STL I + D G Y C + V ++ +P
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL-MTKKNSTFVRVHEKP 328
Score = 54.8 bits (131), Expect = 2e-09
Identities = 14/118 (11%), Positives = 32/118 (27%), Gaps = 23/118 (19%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITT----------------- 53
E++ ++ ++S+ L C + ++W+K +
Sbjct: 550 GPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTL 609
Query: 54 ---NKRLKIQFKKKRSTLIITRIRSEDAGRYECRGT---GVHKDVVSAFAEVSINLRP 105
N + + + +D G Y C + V V + P
Sbjct: 610 WKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAP 667
Score = 52.1 bits (124), Expect = 2e-08
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKI-QFKKKRSTLI 69
P +++K +L++ C+G W + + TL
Sbjct: 32 PRLSIQKDILTIKANTTLQI--TCRGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLT 89
Query: 70 ITRIRSEDAGRYECR 84
I ++ D G Y+C
Sbjct: 90 IPKVIGNDTGAYKCF 104
Score = 46.3 bits (109), Expect = 2e-06
Identities = 9/97 (9%), Positives = 30/97 (30%), Gaps = 2/97 (2%)
Query: 9 IHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTL 68
+ G+ ++ +++ + C + L + + +I + K+
Sbjct: 127 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKK-GF 185
Query: 69 IITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
I AG C ++ + + + + +
Sbjct: 186 TIPSYMISYAGMVFCEAK-INDESYQSIMYIVVVVGY 221
Score = 41.3 bits (96), Expect = 7e-05
Identities = 13/134 (9%), Positives = 28/134 (20%), Gaps = 36/134 (26%)
Query: 6 RATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNK--------- 55
I + S + + L C P P + W+ E N+
Sbjct: 420 PPQIGEKSLIS-PVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTN 478
Query: 56 ------------------------RLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVHKD 91
+ + K ++ + + + Y+C
Sbjct: 479 PYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKV-G 537
Query: 92 VVSAFAEVSINLRP 105
+ P
Sbjct: 538 RGERVISFHVTRGP 551
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 75.5 bits (186), Expect = 9e-18
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P+ + L V + + +C + P P +SW ++ + I + ++ L I
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIRENGQLLTI 66
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
+ D G Y C V + + + ++P
Sbjct: 67 LSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPK 102
Score = 70.9 bits (174), Expect = 5e-16
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
NV + L C GNP P+VSW K + + N R+ + + +L I +
Sbjct: 104 TRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL---ESGSLRIHNV 160
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSI 101
+ EDAG+Y C S ++ +
Sbjct: 161 QKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 75.6 bits (186), Expect = 9e-18
Identities = 34/159 (21%), Positives = 50/159 (31%), Gaps = 26/159 (16%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
+ K + +VCR +P PAVSW N E+TT + + L I I
Sbjct: 6 REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNI 64
Query: 74 RSEDAGRYECRGT-GVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCTYYDTVGE 132
D G Y C G ++ V +N+ P ++ G T
Sbjct: 65 NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT------- 117
Query: 133 LVCQCAEGYKGQRCESKDVYNRSSMYKPYFSWIKGTVQI 171
C+ A G +P SW + I
Sbjct: 118 FSCR-ASGSP----------------EPAISWFRNGKLI 139
Score = 73.3 bits (180), Expect = 7e-17
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
N + + + + CR G+P PA+SWF++ I N++ K + L
Sbjct: 98 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK--YILKGSNTELT 155
Query: 70 ITRIRSEDAGRYECRGT 86
+ I + D G Y CR T
Sbjct: 156 VRNIINSDGGPYVCRAT 172
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 73.2 bits (180), Expect = 1e-17
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK-RSTLIITR 72
+ +++V+ + R+ C+ G P P +SW D + + K+ ++ +LII
Sbjct: 13 LQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEP 72
Query: 73 IRSEDAGRYECR 84
+ S DAG Y C
Sbjct: 73 VTSRDAGIYTCI 84
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 73.2 bits (180), Expect = 1e-17
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
+ + +++VK + C W+K+ VE+ +KR+ I + L+I +
Sbjct: 12 LQDIADLTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDV 70
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSI 101
R ED G Y G +S A+++
Sbjct: 71 RPEDEGDYTFVPDGYA---LSLSAKLNF 95
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 77.3 bits (190), Expect = 1e-17
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKK-KRSTLI 69
+ V+++ ++L L C G+P P VSW K+ + ++ ++F+ + +
Sbjct: 223 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFT 282
Query: 70 ITRIRSEDAGRYECR 84
I + + D+G+Y
Sbjct: 283 INGVSTADSGKYGLV 297
Score = 64.9 bits (158), Expect = 3e-13
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 19 NVSVKLRQSLRLVCRCKG-NPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
+ V ++ L C+ + W+KD EI+ +++ FK TL+IT +D
Sbjct: 15 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK--HDFKDGICTLLITEFSKKD 72
Query: 78 AGRYECR 84
AG YE
Sbjct: 73 AGIYEVI 79
Score = 62.6 bits (152), Expect = 3e-12
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 26 QSLRLVCRCK-GNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
+ ++L V+W + I + R+K ++ L I D G+Y
Sbjct: 123 EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVME 182
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 74.8 bits (184), Expect = 2e-17
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKI-QFKKKRSTLI 69
P + G+ V + + + G P P ++W K I N ++ + S +
Sbjct: 105 PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVF 164
Query: 70 ITRIRSEDAGRYECRGT 86
+ +DAG Y
Sbjct: 165 PNGVERKDAGFYVVCAK 181
Score = 72.8 bits (179), Expect = 1e-16
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITT-NKRLKIQ-FKKKRSTLIIT 71
LRN++V+ + + LVC+ G+P P V W++ EI + +IQ FK LII
Sbjct: 8 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIA 67
Query: 72 RIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
+ +DA Y+ R T VS A + + +
Sbjct: 68 SVTDDDATVYQVRATNQG-GSVSGTASLEVEVPA 100
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 71.9 bits (177), Expect = 3e-17
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTN-KRLKIQFKKKRSTLIITR 72
L + SV+ Q + + R +G P P VSW ++ + + +R + + L I
Sbjct: 9 KVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILA 68
Query: 73 IRSEDAGRYECR 84
DAG Y C+
Sbjct: 69 AERGDAGFYTCK 80
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 76.0 bits (187), Expect = 4e-17
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTN-KRLKIQFKK-KRSTLIIT 71
LRN++V+ + + LVC+ G+P P V W++ EI + + +IQ K LII
Sbjct: 8 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIA 67
Query: 72 RIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
+ +DA Y+ R T VS A + + +
Sbjct: 68 SVTDDDATVYQVRATNQG-GSVSGTASLEVEVPA 100
Score = 71.7 bits (176), Expect = 1e-15
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR-STLI 69
P + G+ V + + + G P P ++W K I N ++ + S +
Sbjct: 105 PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVF 164
Query: 70 ITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
+ +DAG Y + E+ + PD
Sbjct: 165 PNGVERKDAGFYVVCAKNRF-GIDQKTVELDVADVPD 200
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 71.6 bits (176), Expect = 4e-17
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
L+ + L +C+ + + V W K + R ++ R L I +
Sbjct: 12 TQDLKTKEASEGATATL--QCELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDL 69
Query: 74 RSEDAGRYECR 84
DAG Y C
Sbjct: 70 SVADAGEYSCM 80
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 71.6 bits (176), Expect = 4e-17
Identities = 11/71 (15%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRS 75
+ + + ++ VC+ + V+W+ ++ +++ +I ++ + L + I
Sbjct: 8 IMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITK 67
Query: 76 EDAGRYECRGT 86
D G Y C+
Sbjct: 68 LDDGTYRCKVV 78
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 74.4 bits (183), Expect = 4e-17
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P+ G +++ ++ + C+ GNP P + W K+ ++ + K L I
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL---KDGFLQI 167
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
R ED G+YEC S + + +R
Sbjct: 168 ENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR 202
Score = 66.4 bits (162), Expect = 4e-14
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
+ +N V++ C +G+P P++ W K+ +++ + + ++ + I RI
Sbjct: 10 IRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS-RYTVLEQPGGISILRI 68
Query: 74 ----RSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGP 111
D YEC D VSA A ++I G
Sbjct: 69 EPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGF 110
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 73.0 bits (179), Expect = 5e-17
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK-RSTLIITRIRS 75
+ ++ V + R C+ +G P P V WFKD+ + ++ +I + ++ +L I+ +
Sbjct: 48 ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG 107
Query: 76 EDAGRYECR 84
+D +Y C+
Sbjct: 108 DDDAKYTCK 116
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 73.7 bits (181), Expect = 5e-17
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 4 GLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKK 63
GL+ P ++V Q ++L C +G P + W KD + +L I +
Sbjct: 2 GLKLMGAP------VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSE 55
Query: 64 K--RSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
+ L + + DAGRY C+ + +S +++ P
Sbjct: 56 QHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVP 99
Score = 53.3 bits (128), Expect = 2e-09
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLIITR 72
++++V +L C G P P + W++ +I S ++
Sbjct: 102 TVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------SPSVLNV 152
Query: 73 IRSEDAGRYECRGTGVHKDVVSAFAEVSI 101
+ + C + S A V +
Sbjct: 153 TGVTQSTMFSCEAHNLKGLASSRTATVHL 181
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 70.8 bits (174), Expect = 6e-17
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
R+V V + V W + +I+ + + + + R TL + +
Sbjct: 12 SKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREV 70
Query: 74 RSEDAGRYECR 84
D G Y
Sbjct: 71 GPADQGSYAVI 81
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 71.2 bits (175), Expect = 7e-17
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
GLRN + L C V W+K + + R ++ R L I +
Sbjct: 23 TEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETLRDGDRHSLRQDGARCELQIRGL 80
Query: 74 RSEDAGRYECR-GTGVHKDVVSAFAEVSINLRP 105
+EDAG Y C G A +++ P
Sbjct: 81 VAEDAGEYLCMCGK------ERTSAMLTVRAMP 107
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 71.0 bits (174), Expect = 1e-16
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEI-TTNKRLKIQFKKKRSTLI 69
P+ G N +V + + L C G+P+P + W KD V + T + R+K + L
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL---ENGVLQ 65
Query: 70 ITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPLD 115
I + D GRY C + + A + + + P P D
Sbjct: 66 IRYAKLGDTGRYTCIASTPS-GEATWSAYIEVQEFGVPVQPPRPTD 110
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 75.0 bits (184), Expect = 1e-16
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
Query: 4 GLRATIHPIEVSGLRNVSVKLRQSLRLVCR-CKGNPLPAVSWFKDNVEITTNKRLKIQFK 62
G A + E + ++ L C G P+ W KD + ++R+ +
Sbjct: 2 GRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG-- 59
Query: 63 KKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSIN 102
L + ED+G Y CR + + V+
Sbjct: 60 --PQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDA 97
Score = 65.8 bits (160), Expect = 2e-13
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLK-IQFKKKRSTLIITRIRS 75
+ ++V ++R C GNP P++SW K+ E R+ I+ + ++ +L++ +
Sbjct: 130 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVP 189
Query: 76 EDAGRYECRGTGVHKDVVSAFAEVSINLRPDNM 108
D G Y C + + + R +
Sbjct: 190 SDRGNYTCVVENKF-GSIRQTYTLDVLERSPHR 221
Score = 58.1 bits (140), Expect = 9e-11
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 13/89 (14%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFK----DNVEITTNKRLKIQ------ 60
++ N + L + C+ + P + W K + ++ + +
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282
Query: 61 ---FKKKRSTLIITRIRSEDAGRYECRGT 86
K+ L + + EDAG Y C
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAG 311
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 73.4 bits (180), Expect = 1e-16
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 15/112 (13%)
Query: 2 SKGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQF 61
+G + T++P + +V Q ++L CR G+P WFK N EI
Sbjct: 16 PRGSKITVNP------ESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG------- 62
Query: 62 KKKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCP 113
S LI + +DAG Y CR S ++++ + P++
Sbjct: 63 --NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVD 112
Score = 71.5 bits (175), Expect = 6e-16
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
+ + +L L C G+P+P WFK+ + +T + ++
Sbjct: 119 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE---------TKKLYMV 169
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
+ E G Y C S E+ I+ +
Sbjct: 170 PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNN 205
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 70.5 bits (173), Expect = 1e-16
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
+ K+ + L LV +G P P V W K + T+ R+ ++ + + + D
Sbjct: 32 QTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS-RVHVRTSDFDTVFFVRQAARSD 90
Query: 78 AGRYECR 84
+G YE
Sbjct: 91 SGEYELS 97
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 75.4 bits (185), Expect = 2e-16
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR----- 65
P+ + +++ S+ L C GNP P +SW D +I N R ++
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVV 489
Query: 66 STLIITRIRSEDAGRYECRGT---GVHKDVVSAFAEVSINLRP 105
S L IT + + D G Y+C G V A++++ P
Sbjct: 490 SYLNITSVHANDGGLYKCIAKSKVG----VAEHSAKLNVYGLP 528
Score = 74.2 bits (182), Expect = 4e-16
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
+ + ++ ++L + C G P+ ++ W +DN + N++ K+ TLII +
Sbjct: 530 IRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVF---PNGTLIIENV 586
Query: 74 -RSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
R+ D Y C EV + + P
Sbjct: 587 ERNSDQATYTCVAKNQEGYSARGSLEVQVMVLP 619
Score = 68.4 bits (167), Expect = 3e-14
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 3/98 (3%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR---ST 67
P + + + ++ C+ G P P V+W K + + + R T
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGT 774
Query: 68 LIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
L + I+ + G Y C +SA +S+
Sbjct: 775 LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH 812
Score = 68.0 bits (166), Expect = 6e-14
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQ--FKKKRSTL 68
+ ++ + ++ L+C +G P+P W+K T + + + K+ TL
Sbjct: 249 VVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTL 308
Query: 69 IITRIRSEDAGRYECR-----GTGVHKDVVSAFAEVSINLRPDNM 108
II ED+G+Y C G + V++ A +S + P
Sbjct: 309 IIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQ 353
Score = 66.9 bits (163), Expect = 1e-13
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
+V + C+ GNP+ VSW KD I ++ L I
Sbjct: 344 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES----------VLRI 393
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSI 101
++ ED G Y+C + A AE+ +
Sbjct: 394 ESVKKEDKGMYQCFVRNDR-ESAEASAELKL 423
Score = 61.1 bits (148), Expect = 1e-11
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKI-QFKKKRSTL 68
I ++ Q L L C G LP + W D I+ + + + ++ S L
Sbjct: 620 RIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVL 679
Query: 69 IITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
I + + AG + C + +++ + P
Sbjct: 680 TIEAVEASHAGNFTCHARNLA-GHQQFTTPLNVYVPP 715
Score = 58.0 bits (140), Expect = 2e-10
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED- 77
+ + C+ GNP+P + W + + + ++ L+ R+ED
Sbjct: 48 RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP-GLRQISSDGKLVFPPFRAEDY 106
Query: 78 -----AGRYECRGTGVHKDVVSAFAEVSINLRPD 106
A Y C ++S V +
Sbjct: 107 RQEVHAQVYACLARNQFGSIISRDVHVRAVVAQY 140
Score = 54.2 bits (130), Expect = 3e-09
Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 16/148 (10%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCK---GNPLPAVSWFKDNVEI-----TTNKR 56
+RA + + + V S + C + + VSW D E + +
Sbjct: 133 VRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGK 192
Query: 57 LKIQFKKKRSTLIITRIRSEDA-GRYECRGT--GVHKDVVSAFAEVSINLRPDNMGGPCP 113
+ L I + ED Y+CR + +SA + P + P
Sbjct: 193 YLVL---PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKV 249
Query: 114 LDSYCLNGGSCTYYDTVGELVCQCAEGY 141
+ + + + T+ L+C A+GY
Sbjct: 250 VSLAKFDMKTYSGSSTM-ALLCP-AQGY 275
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 70.1 bits (172), Expect = 2e-16
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
L N+ V+ + + C+ +P V+W K +E+ + + + + L I+ +
Sbjct: 12 TEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISAL 70
Query: 74 RSEDAGRYECR 84
D+ Y C
Sbjct: 71 EKADSDTYTCD 81
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 70.1 bits (172), Expect = 2e-16
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTN-KRLKIQFKKKRSTLI 69
PI + G N ++ + + L C+ G+PLP +SW K+ R IQ ++ TL
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ---EQGTLQ 65
Query: 70 ITRIRSEDAGRYECR 84
I +R D G Y C
Sbjct: 66 IKNLRISDTGTYTCV 80
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 74.1 bits (182), Expect = 2e-16
Identities = 22/95 (23%), Positives = 41/95 (43%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P G + V+ ++ ++C GNP P ++WFKD + + + + + L I
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI 168
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
D G+YEC T S+ A + + ++
Sbjct: 169 ESSEETDQGKYECVATNSAGVRYSSPANLYVRVQN 203
Score = 68.7 bits (168), Expect = 2e-14
Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
+ + ++ + C G+P+P V W + ++T + + ++
Sbjct: 209 SILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV------GRNVLELT 262
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
+D+ Y C V+ A A++++ P
Sbjct: 263 DVKDSANYTCVAMSSL-GVIEAVAQITVKSLP 293
Score = 65.2 bits (159), Expect = 3e-13
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR-STLIITR 72
+ ++ VC+ G+P P V+W K ++ + + I+F + + L I
Sbjct: 10 IKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQP 69
Query: 73 IRS-EDAGRYECRGT-GVHKDVVSAFAEV 99
+R+ D YEC V + V A V
Sbjct: 70 LRTPRDENVYECVAQNSVGEITVHAKLTV 98
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 70.1 bits (172), Expect = 2e-16
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK--RSTLIIT 71
+ ++ V S++L C+ P P + W ++N + N ++ R TL+I
Sbjct: 19 IYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIK 78
Query: 72 RIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
+ +DAG Y V + + + RP+
Sbjct: 79 DVNKKDAGWYTVSAVNEA-GVTTCNTRLDVTARPN 112
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 69.3 bits (170), Expect = 3e-16
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
S L++ +V Q L C +G P+P ++W + I + + + L I
Sbjct: 15 SSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST---CEAGVAELHIQDA 71
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSIN 102
ED G Y C VS A V+++
Sbjct: 72 LPEDHGTYTCLAENAL-GQVSCSAWVTVH 99
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 69.3 bits (170), Expect = 3e-16
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITT--NKRLKIQFKKKRSTLIIT 71
L + + + + L C V WFK+ EI R +I+ + K+ LII
Sbjct: 11 TKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 69
Query: 72 RIRSEDAGRYECRGTGVHKDVVSAFAEVSINLR 104
DA Y TG + A++S++L+
Sbjct: 70 GATKADAAEYSVMTTG-----GQSSAKLSVDLK 97
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 73.5 bits (180), Expect = 3e-16
Identities = 28/170 (16%), Positives = 49/170 (28%), Gaps = 33/170 (19%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P + NV SL C K P SW KD V + RL+++ K ++ +
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTF 62
Query: 71 TRIRSEDAGRYECRGT---------GVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNG 121
+ +D G Y C T + ++ + +S + + L L
Sbjct: 63 KDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEK 122
Query: 122 GSCTYYDTVGELVCQCAEGYKGQRCESKDVYNRSSMYKPYFSWIKGTVQI 171
G Q + ++I +I
Sbjct: 123 GQVR-------FWMQAEKLSG----------------NAKVNYIFNEKEI 149
Score = 68.5 bits (167), Expect = 2e-14
Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRC-KGNPLPAVSWFKDNVEITTNKRLKIQFKKK--RST 67
+ V V + + +R + K + V++ + EI + K+ +
Sbjct: 108 TVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 167
Query: 68 LIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
+ + +++ ED G Y + A ++ L D
Sbjct: 168 MFMEKLQDEDEGTYTFQLQDGK-----ATNHSTVVLVGD 201
Score = 64.2 bits (156), Expect = 6e-13
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
+ V ++ L C+ + W+KD EI+ +++ FK TL+IT +D
Sbjct: 230 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK--HDFKDGICTLLITEFSKKD 287
Query: 78 AGRYECR 84
AG YE
Sbjct: 288 AGIYEVI 294
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 73.8 bits (181), Expect = 4e-16
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTN--KRLKIQFKKKRSTL 68
P+ +++ K + C NP+ ++FK+ ++ N R+ + L
Sbjct: 213 PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRL 272
Query: 69 IITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
+ ED G Y C ++++ P
Sbjct: 273 LFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAP 309
Score = 66.1 bits (161), Expect = 2e-13
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 2/97 (2%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLI 69
P+ V + L C +GN SW KD + +K +L+
Sbjct: 7 PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH-NAALRKDEGSLV 65
Query: 70 ITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
R ++ D G Y+C S
Sbjct: 66 FLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIA 102
Score = 64.9 bits (158), Expect = 5e-13
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 12 IEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIIT 71
E + + VK Q + + C+ G P P V W + ++ + S L+I
Sbjct: 311 YEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGR-----ATVTDSGLVIK 365
Query: 72 RIRSEDAGRYECRGTGVHKDVVSAFAEVSIN 102
+++ D G Y CR T H D V +N
Sbjct: 366 GVKNGDKGYYGCRATNEHGD-KYFETLVQVN 395
Score = 51.4 bits (123), Expect = 2e-08
Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 8/110 (7%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCR-CKGNPLPAVSWFKDNVEITTNKRLKIQFKK 63
R T + + + +L C P P ++W K N + ++
Sbjct: 95 FRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRR 154
Query: 64 KRS----TLIITRIRSEDA---GRYECRGTGVHKDVVSAFAEVSINLRPD 106
+ L T + ED +Y C D E I
Sbjct: 155 ITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTK 204
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 73.0 bits (179), Expect = 4e-16
Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 26/164 (15%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
+ + K + +VC + P + W ++ K ++ + L I
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV-LSNNYLQI 159
Query: 71 TRIRSEDAGRYECRGT-GVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCTYYDT 129
I+ D G Y C G ++ +V +N+ P +++ G S T
Sbjct: 160 RGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVT---- 215
Query: 130 VGELVCQCAEGYKGQRCESKDVYNRSSMYKPYFSWIKGTVQIFN 173
LVC A+G+ +P SW K I N
Sbjct: 216 ---LVCD-ADGFP----------------EPTMSWTKDGEPIEN 239
Score = 66.8 bits (163), Expect = 6e-14
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 10/105 (9%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPL-PAVSWFKDNVE--ITTNKRLKIQF 61
L+ I P + + +S +C+ G+ +SWF N E +R+ + +
Sbjct: 3 LQVDIVP------SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVW 56
Query: 62 KKKRS-TLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
S TL I +DAG Y+C T A V I +
Sbjct: 57 NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL 101
Score = 64.9 bits (158), Expect = 3e-13
Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKR--LKIQFKKKRSTL 68
+ N + L QS+ LVC G P P +SW KD I + K F S L
Sbjct: 197 VQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSEL 256
Query: 69 IITRIRSEDAGRYECRGT 86
I + D Y C
Sbjct: 257 TIRNVDKNDEAEYVCIAE 274
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 71.8 bits (176), Expect = 4e-16
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 7 ATIHPIEVSGLRNVSVKLRQSLRLVCRC-KGNPLPAVSWFKDNVEITTNKRLKIQFKKKR 65
A + +V V + + + C+ +G+P P +SW KD + +
Sbjct: 108 AILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI---RG 164
Query: 66 STLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
L+IT R DAG+Y C GT + + S AE+++ RP
Sbjct: 165 GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERP 204
Score = 64.4 bits (157), Expect = 2e-13
Identities = 31/161 (19%), Positives = 51/161 (31%), Gaps = 31/161 (19%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRS--TLIITRIRS 75
++ V + L C+ +G P P + W+K + T+K + +L RI
Sbjct: 17 SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVH 76
Query: 76 -----EDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCTYYDTV 130
D G Y C + VS A + + + D+ P D G
Sbjct: 77 GRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQN-PSDVMVAVGEPAV----- 130
Query: 131 GELVCQCAEGYKGQRCESKDVYNRSSMYKPYFSWIKGTVQI 171
+ CQ G+ +P SW K +
Sbjct: 131 --MECQPPRGHP----------------EPTISWKKDGSPL 153
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 69.3 bits (170), Expect = 4e-16
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTN-KRLKIQFKKK-RSTLIIT 71
L++ + + CR GNP P + WFKD +I+ IQ +L T
Sbjct: 12 EMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTT 71
Query: 72 RIRSEDAGRYECR 84
+D G Y
Sbjct: 72 ASTLDDDGNYTIM 84
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 72.9 bits (179), Expect = 8e-16
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 6/104 (5%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITT---NKRLKIQFKKKRST 67
+S +++ + ++ L C G+P+P + W K+ ++ + R+ +
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVL---PSGA 178
Query: 68 LIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGP 111
L I+R++ D+G Y C AEV I P
Sbjct: 179 LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQL 222
Score = 70.6 bits (173), Expect = 5e-15
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
++ N+ + C G P+P V+W K+ + + +I S L I +
Sbjct: 316 LNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIV---GGSNLRILGV 372
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSIN 102
D G Y+C + A++ +
Sbjct: 373 VKSDEGFYQCVAENEA-GNAQSSAQLIVP 400
Score = 69.5 bits (170), Expect = 1e-14
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
+ NV + L C G P P+ +W + I + S L+I
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSK--KYSLLGGSNLLI 279
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
+ + +D+G Y C T + + +SA AE+++ + P
Sbjct: 280 SNVTDDDSGTYTCVVTYKN-ENISASAELTVLVPP 313
Score = 61.4 bits (149), Expect = 9e-12
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGN-PLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI--- 69
VS + ++ L C + + +P + W KD + + + Q S LI
Sbjct: 25 VSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNI 84
Query: 70 -ITRIRSEDAGRYECRGT-GVHKDVVSAFAEVSINLRPD 106
+R D G Y+C + G ++S A+V +
Sbjct: 85 LHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLR 123
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 70.7 bits (173), Expect = 8e-16
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 2 SKGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQF 61
+ V ++V + Q++ L C GNP+P + W K + +
Sbjct: 105 PERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE----I 160
Query: 62 KKKRSTLIITRIRSEDAGRYECR 84
+ L I I+ ED G YEC
Sbjct: 161 STSGAVLKIFNIQLEDEGIYECE 183
Score = 61.4 bits (149), Expect = 2e-12
Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 2/110 (1%)
Query: 6 RATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPA--VSWFKDNVEITTNKRLKIQFKK 63
+ P V VK + + L+C + W + + + +
Sbjct: 4 SGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQ 63
Query: 64 KRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCP 113
L I + + D G Y C + + + P+ P P
Sbjct: 64 TNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYP 113
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 70.2 bits (172), Expect = 9e-16
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
N + + + + CR G+P PA+SWF++ I N++ K + L +
Sbjct: 5 ISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK--YILKGSNTELTV 62
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
I + D G Y CR T A + + ++P
Sbjct: 63 RNIINSDGGPYVCRATNKA-GEDEKQAFLQVFVQP 96
Score = 64.1 bits (156), Expect = 2e-13
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEIT-------TNKRLKIQFKKKRSTLI 69
L+N + + LVC +G P+P ++W + T + R++++ + S+L
Sbjct: 101 LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH 160
Query: 70 ITRIRSEDAGRYEC 83
I ++ D+GRY+C
Sbjct: 161 IKDVKLSDSGRYDC 174
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 70.6 bits (173), Expect = 1e-15
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 3/105 (2%)
Query: 4 GLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNK--RLKIQF 61
+ ++ ++ G V + + C P +SWF+D + ++ +KI
Sbjct: 12 PRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN 71
Query: 62 KKKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
S L +T D G Y C S + P
Sbjct: 72 TPSASYLEVTPDSENDFGNYNCTAVNRI-GQESLEFILVQADTPS 115
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 67.8 bits (166), Expect = 1e-15
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDA 78
V +R V +P V W+K+ EI + + + K + L I + D
Sbjct: 17 AYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDD 75
Query: 79 GRYECR 84
Y
Sbjct: 76 SEYYVT 81
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 67.8 bits (166), Expect = 1e-15
Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSE 76
+ + V L+L CR + + +++W +D V++ + R +I + +
Sbjct: 10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI----TGEEVEVQDSVPA 64
Query: 77 DAGRYECRGTGVHKDVVSAFAEVSI 101
D+G Y C + + + V++
Sbjct: 65 DSGLYACVTSSPS-GSDTTYFSVNV 88
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 67.9 bits (166), Expect = 1e-15
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLK-IQFKKKRSTLIITRIRS 75
R +V +++ C GNP+P + W K+ E R+ + + + +LI+ +
Sbjct: 15 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP 74
Query: 76 EDAGRYECR 84
D G Y C
Sbjct: 75 SDKGNYTCV 83
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 69.9 bits (171), Expect = 2e-15
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLK-IQFKKKRSTLIITRIRSE 76
R +V +++ C GNP+P + W K+ E R+ + + + +LI+ +
Sbjct: 27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 86
Query: 77 DAGRYECRGTGVHKDVVSAFAEVSINLRP 105
D G Y C + ++ + + R
Sbjct: 87 DKGNYTCVVENEY-GSINHTYHLDVVERS 114
Score = 58.8 bits (142), Expect = 3e-11
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFK-----------DNVEITTNKRLKI 59
++ N S + + VC+ + P + W K D + +
Sbjct: 119 ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG 178
Query: 60 QFKKKRSTLIITRIRSEDAGRYECRGT 86
L + + DAG Y C+ +
Sbjct: 179 INSSNAEVLALFNVTEADAGEYICKVS 205
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding,
immunoglobulin domain, kinase, membrane, nucleotid
binding; HET: NAG; 2.10A {Homo sapiens}
Length = 241
Score = 70.0 bits (171), Expect = 3e-15
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLK-IQFKKKRSTLIITRIRSE 76
+ ++V ++R C GNP P++SW K+ E R+ I+ + ++ +L++ +
Sbjct: 23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS 82
Query: 77 DAGRYECR 84
D G Y C
Sbjct: 83 DRGNYTCV 90
Score = 61.5 bits (149), Expect = 4e-12
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 12/88 (13%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDN------------VEITTNKRLK 58
++ N + L + C+ + P + W K +T K
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI 174
Query: 59 IQFKKKRSTLIITRIRSEDAGRYECRGT 86
+ + L + + D G Y CR T
Sbjct: 175 SESVEADVRLRLANVSERDGGEYLCRAT 202
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 66.7 bits (163), Expect = 3e-15
Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
+ ++ V L+L CR + + +++W +D V++ + R +I + +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI----TGEEVEV 64
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSI 101
D+G Y C + + + V++
Sbjct: 65 RDSIPADSGLYACVTSSPS-GSDTTYFSVNV 94
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 66.2 bits (162), Expect = 4e-15
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK 64
L+ + P + + +L L C G+P+P WFK+ + +T
Sbjct: 4 LQICVEP------TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE---------T 48
Query: 65 RSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSIN 102
+ ++ + E G Y C S E+ I+
Sbjct: 49 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 70.7 bits (173), Expect = 5e-15
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
+ + + + LR C G P PAV W +D + + R+++ L +++
Sbjct: 298 LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GGELRFSKL 353
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSI 101
ED+G Y+C H V A AE+++
Sbjct: 354 VLEDSGMYQCVAENKHGT-VYASAELTV 380
Score = 65.7 bits (160), Expect = 3e-13
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
I+ + Q + L C GNP+P + W K + ++ L I
Sbjct: 208 SIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS------QTSKWLSSEPLLHI 261
Query: 71 TRIRSEDAGRYECR 84
+ ED G YEC
Sbjct: 262 QNVDFEDEGTYECE 275
Score = 60.6 bits (147), Expect = 1e-11
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRST 67
P + + + L CR + NP W + E+ + +
Sbjct: 8 EEQPAHTLFPEGSA---EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRL-VAGDL 63
Query: 68 LIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
+I ++++DAG Y+C T VVS A + +
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQE 102
Score = 56.8 bits (137), Expect = 3e-10
Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 5/110 (4%)
Query: 7 ATIHPIEVSGLRNVSVKLRQSLRLVCR-CKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR 65
+ V + + C P + W + + +
Sbjct: 98 GFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT 157
Query: 66 STLIITRIRSEDAGRYECRGT----GVHKDVVSAFAEVSINLRPDNMGGP 111
L I + + D G Y C T + K V S F+++S+ P
Sbjct: 158 GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAP 207
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 69.9 bits (171), Expect = 8e-15
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
V + ++ V + +S+ C+ G P P W K+ + T R++I+ + TL IT +
Sbjct: 299 VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE----QGTLNITIV 354
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSI 101
DAG Y+C H + + AE+S+
Sbjct: 355 NLSDAGMYQCVAENKHGV-IFSSAELSV 381
Score = 66.0 bits (161), Expect = 2e-13
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
IEV V + +++L C GNP+P + W + + + K + + L I
Sbjct: 206 KIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKS---NGILEI 262
Query: 71 TRIRSEDAGRYECR 84
+ EDAG YEC
Sbjct: 263 PNFQQEDAGSYECV 276
Score = 59.5 bits (144), Expect = 4e-11
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRST 67
P V + + ++L C KGNP P + W + ++ + S
Sbjct: 9 VQEPSHVMFPLDSE---EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG-SL 64
Query: 68 LIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
LI +++DAG Y+C T +VS A++ +
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLEN 103
Score = 56.0 bits (135), Expect = 5e-10
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 3/108 (2%)
Query: 7 ATIHPIEVSGLRNVSVKLRQSLRLVCR-CKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR 65
A + + VSV+ Q + L+C + + +W + + R + +
Sbjct: 99 AYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET-- 156
Query: 66 STLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCP 113
L I ++ D G Y C T + + LR D + G
Sbjct: 157 GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYE 204
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 65.9 bits (161), Expect = 8e-15
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK-----RSTLIITRIRS 75
S + KGNP PA+ WF + + +K + + L +
Sbjct: 12 SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH 71
Query: 76 EDAGRYECR 84
+ G Y
Sbjct: 72 MNNGDYTLI 80
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 69.1 bits (169), Expect = 1e-14
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 13 EVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEIT-------TNKRLKIQFKKKR 65
+ L+N + + LVC +G P+P ++W + T + R++++ +
Sbjct: 3 HIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS 62
Query: 66 STLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
S+L I ++ D+GRY+C + I P
Sbjct: 63 SSLHIKDVKLSDSGRYDCEAASRI-GGHQKSMYLDIEYAP 101
Score = 69.1 bits (169), Expect = 2e-14
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 3/98 (3%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTN--KRLKIQFKKKRSTL 68
P +S + + C K NP ++ W +D + + LK ++ L
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL 160
Query: 69 IITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
I D GRY C T +++ P
Sbjct: 161 EIAPTSDNDFGRYNCTATNHI-GTRFQEYILALADVPS 197
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 67.6 bits (165), Expect = 2e-14
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 7 ATIHPIEVSGLRNVSVKLRQSLRLVC-RCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR 65
A + ++ V ++ L C KG P P + W KD V + K + +
Sbjct: 105 AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164
Query: 66 S-----TLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
L+I+ + D G Y+C + S++A++ + ++
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKA 209
Score = 63.7 bits (155), Expect = 4e-13
Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 28/162 (17%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTL----I 69
+ ++ VK + L C+ +G P P + WFKD ++TN++ + + K L
Sbjct: 13 IEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRT 72
Query: 70 ITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCTYYDT 129
+ + +D G Y C VS A + I + D+ P D+ G +
Sbjct: 73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVE-PKDTRVAKGETAL---- 127
Query: 130 VGELVCQCAEGYKGQRCESKDVYNRSSMYKPYFSWIKGTVQI 171
L C +G +P WIK V +
Sbjct: 128 ---LECGPPKGIP----------------EPTLIWIKDGVPL 150
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 64.4 bits (157), Expect = 2e-14
Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
V +V ++ L C P P + W KD V + LI+ I
Sbjct: 14 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP---------PSPVLILPEI 64
Query: 74 RSEDAGRYECRGT-GVHKDVVSAFAEVSI 101
+D G Y C T H S +SI
Sbjct: 65 GPQDQGTYSCVATHSSHGPQESRAVSISI 93
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 69.0 bits (168), Expect = 2e-14
Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
V V V + S+ L + W + + +Q + +++I
Sbjct: 49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQ-NRGVVSMVI 107
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
++ AG Y + + VSI
Sbjct: 108 LKMTETQAGEYLLFIQSEATN-YTILFTVSIRNTL 141
Score = 62.8 bits (152), Expect = 3e-12
Identities = 8/88 (9%), Positives = 20/88 (22%), Gaps = 5/88 (5%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
+ + + R K P +W ++ ++
Sbjct: 334 EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK----GLDNGYSISKFCNHKHQ 389
Query: 78 AGRYECRGTGVHKDVVSAFAEVSINLRP 105
G Y + ++I +P
Sbjct: 390 PGEYIFHAENDD-AQFTKMFTLNIRRKP 416
Score = 55.9 bits (134), Expect = 7e-10
Identities = 11/92 (11%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 2 SKGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKG-NPLPAVSWFKDNVEITTNKRLKIQ 60
++ ++ + L + +K+ + L + C+ N ++W +N + ++
Sbjct: 219 TRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMS 278
Query: 61 FKKKR------STLIITRIRSEDAGRYECRGT 86
++ + D G Y C +
Sbjct: 279 TYSTNRTMIRILFAFVSSVARNDTGYYTCSSS 310
Score = 46.6 bits (110), Expect = 1e-06
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 4/76 (5%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVH 89
LVC + P P V W + + + K + + C
Sbjct: 159 LVCISESVPEPIVEWVLCDSQGESCK----EESPAVVKKEEKVLHELFGTDIRCCARNEL 214
Query: 90 KDVVSAFAEVSINLRP 105
+ + +N P
Sbjct: 215 GRECTRLFTIDLNQTP 230
Score = 42.0 bits (98), Expect = 5e-05
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 22 VKLRQSLRLVCRCKGNPLPAVSWFKD-----------NVEITTNKRLKIQFKKKRSTLII 70
+ + + C G PLP+ +W K + K + F + S+ +
Sbjct: 419 LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTL 478
Query: 71 TRIRSEDAGRYECR 84
+ +C
Sbjct: 479 NMSEAIKGFLVKCC 492
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein;
1.85A {Homo sapiens}
Length = 207
Score = 66.9 bits (163), Expect = 3e-14
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 17 LRNVSVKLRQSLRLV-CRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRS--TLIITRI 73
V + + +R K + V++ + EI + K+ + + + ++
Sbjct: 9 ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKL 68
Query: 74 RSEDAGRYECR 84
+ ED G Y +
Sbjct: 69 QDEDEGTYTFQ 79
Score = 61.1 bits (148), Expect = 3e-12
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
+ V ++ L C+ + W+KD EI+ +++ FK TL+IT +D
Sbjct: 125 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK--HDFKDGICTLLITEFSKKD 182
Query: 78 AGRYECR 84
AG YE
Sbjct: 183 AGIYEVI 189
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 64.5 bits (157), Expect = 4e-14
Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 24 LRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK----RSTLIITRIRSEDAG 79
LR + +GNP P + W + + +K + +++ ++ L+ + + G
Sbjct: 19 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNG 78
Query: 80 RYECR 84
Y
Sbjct: 79 NYTLI 83
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 65.6 bits (160), Expect = 5e-14
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK 64
++ + + K + +VC + P + W ++ K ++
Sbjct: 95 VKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV-LS 153
Query: 65 RSTLIITRIRSEDAGRYECRGT 86
+ L I I+ D G Y C G
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGR 175
Score = 64.1 bits (156), Expect = 2e-13
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPL-PAVSWFKDNVEI--TTNKRLKIQFKKKRS-TLIITRI 73
+ + +S +C+ G+ +SWF N E +R+ + + S TL I
Sbjct: 10 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 69
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
+DAG Y+C T A V I +
Sbjct: 70 NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL 101
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 67.8 bits (165), Expect = 6e-14
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
V V V + S+ L + W + + +Q + +++I
Sbjct: 49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQ-NRGVVSMVI 107
Query: 71 TRIRSEDAGRYECR 84
++ AG Y
Sbjct: 108 LKMTETQAGEYLLF 121
Score = 61.6 bits (149), Expect = 8e-12
Identities = 11/85 (12%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 9 IHPIEVSGLRNVSVKLRQSLRLVCR-CKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR-- 65
++ + L + +K+ + L + C+ N ++W +N + ++
Sbjct: 226 LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285
Query: 66 ----STLIITRIRSEDAGRYECRGT 86
++ + D G Y C +
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSS 310
Score = 60.8 bits (147), Expect = 1e-11
Identities = 7/88 (7%), Positives = 18/88 (20%), Gaps = 5/88 (5%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
+ + + R K P +W ++ ++
Sbjct: 334 EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK----GLDNGYSISKFCNHKHQ 389
Query: 78 AGRYECRGTGVHKDVVSAFAEVSINLRP 105
G Y + ++I
Sbjct: 390 PGEYIFHAENDD-AQFTKMFTLNIRSGT 416
Score = 42.0 bits (98), Expect = 4e-05
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 4/84 (4%)
Query: 22 VKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRY 81
K+ LVC + P P V W + + + K K+ ++ + D
Sbjct: 151 RKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAV-VKKEEKVLHELFGTD---I 206
Query: 82 ECRGTGVHKDVVSAFAEVSINLRP 105
C + + +N P
Sbjct: 207 RCCARNELGRECTRLFTIDLNQTP 230
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 63.1 bits (154), Expect = 7e-14
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNK----RLKIQFKKKRSTLI 69
V+ L + V + + + V W K+ VE+T R + + KR LI
Sbjct: 12 VTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILI 70
Query: 70 ITRIRSEDAGRYECR 84
+ + ED GRY+
Sbjct: 71 FSDVVQEDRGRYQVI 85
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 65.4 bits (159), Expect = 9e-14
Identities = 25/173 (14%), Positives = 45/173 (26%), Gaps = 38/173 (21%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR-- 65
T+H E V + ++L C G P V W D + T +
Sbjct: 6 TVHSSE----PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 66 ------STLIITRIRSEDAGRYECRGT-GVHKDVVSAFAEVSINLRPDNMGGPCPLDSYC 118
+ + + ED G Y C + ++ + + P + S
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPP--SKPTVNIPSSA 119
Query: 119 LNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVYNRSSMYKPYFSWIKGTVQI 171
G L C +G ++W K + +
Sbjct: 120 TIGNRAV-------LTCSEQDGSP----------------PSEYTWFKDGIVM 149
Score = 63.4 bits (154), Expect = 5e-13
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCR-CKGNPLPAVSWFKDNVEITTNKRLKIQFKK 63
L + P + + S + L C G+P +WFKD + + TN + F
Sbjct: 102 LIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSN 161
Query: 64 KR-------STLIITRIRSEDAGRYEC 83
L+ + + D G Y C
Sbjct: 162 SSYVLNPTTGELVFDPLSASDTGEYSC 188
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 62.8 bits (153), Expect = 1e-13
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEIT-TNKRLKIQFKKKRSTLIITRIRSED 77
V +RL + V W K+ EI + + + + TL I++ D
Sbjct: 25 AYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLAD 83
Query: 78 AGRYECR 84
Y+C
Sbjct: 84 DAAYQCV 90
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 66.4 bits (162), Expect = 1e-13
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
I ++ V R ++ + C KGNP P+ W +++ K ++ +++ TL+I
Sbjct: 18 TITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVI 77
Query: 71 ----TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
E G Y+C +S + ++ P
Sbjct: 78 DFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPL 117
Score = 66.0 bits (161), Expect = 2e-13
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
+ V L L C G P P ++W+K ++ ++ K +F+ L IT + ED
Sbjct: 230 SSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSD---KAKFENFNKALRITNVSEED 286
Query: 78 AGRYECR 84
+G Y C
Sbjct: 287 SGEYFCL 293
Score = 62.6 bits (152), Expect = 3e-12
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRI 73
+ +N+ + + RLVCR GNP P V W + + + + + T+I
Sbjct: 316 LDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNR-EVAGDTIIFRDT 374
Query: 74 RSEDAGRYECRGTGVHKDVVSAFAEVSI 101
+ Y+C + H + A A VS+
Sbjct: 375 QISSRAVYQCNTSNEHGY-LLANAFVSV 401
Score = 53.7 bits (129), Expect = 4e-09
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 6/104 (5%)
Query: 7 ATIHPIEVSGLRNVSVKLRQSLRLVCR-CKGNPLPAVSWFKDNVE-ITTNKRLKIQFKKK 64
+ L V V+ L L C G P P + W ++E IT +KR+
Sbjct: 113 SKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQG---H 169
Query: 65 RSTLIITRIRSEDA-GRYECRGTGVHKDVVSAFAEVSINLRPDN 107
L + + +D Y C + ++ +
Sbjct: 170 NGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTR 213
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 64.1 bits (156), Expect = 2e-13
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVS--WFKDNVEITTNKRLKIQFKKKRSTLIIT 71
V+ + + L C + + W K+ VE+T ++ I
Sbjct: 7 VTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-----NASNMEYRIN 61
Query: 72 RIRSEDAGRYECRGTGVHKDVVSAFAEV 99
+ R+ED+G Y C V +A EV
Sbjct: 62 KPRAEDSGEYHCVYHFVSAPKANATIEV 89
Score = 61.0 bits (148), Expect = 3e-12
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEIT-----TNKRLKIQFKKKRSTL 68
R+ + Q + C+ G P P W K + ++ R I K+ + L
Sbjct: 96 TGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTEL 155
Query: 69 IITRIRS-EDAGRYECRGT 86
I ++ ED G YEC T
Sbjct: 156 NIVNLQITEDPGEYECNAT 174
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 66.0 bits (161), Expect = 2e-13
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
P + V QS CR + P V+W KD+ E+ + + ++ L
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Query: 70 ITRIRSEDAGRYECR 84
I R++ +D G Y R
Sbjct: 542 INRVKGDDKGEYTVR 556
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 62.7 bits (152), Expect = 3e-13
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 13/87 (14%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR----- 65
V + + S+ L C G+P+P + W+ + +
Sbjct: 22 AGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIH 81
Query: 66 --------STLIITRIRSEDAGRYECR 84
ST+ I + ED G YECR
Sbjct: 82 ATYHQHAASTISIDTLVEEDTGTYECR 108
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 65.7 bits (160), Expect = 3e-13
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
++ + V+ ++ L C + W+ +N + + RL++ + TL +
Sbjct: 290 KPFITSNNSNPVEDEDAVALTCEPEIQNTT-YLWWVNNQSLPVSPRLQLSNDNR--TLTL 346
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
+ D G YEC S +++ PD
Sbjct: 347 LSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPD 382
Score = 63.0 bits (153), Expect = 3e-12
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 3/96 (3%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
+S + V+ + ++ C + W+ +N + + RL++ TL +
Sbjct: 112 KPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLS--NGNRTLTL 168
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
+ D Y+C S +++ PD
Sbjct: 169 FNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPD 204
Score = 61.5 bits (149), Expect = 9e-12
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 3/96 (3%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
+S + V+ + ++ C + W+ + + + RL++ TL +
Sbjct: 468 KPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQLSNGN--RTLTL 524
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
+ DA Y C S + + PD
Sbjct: 525 FNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPD 560
Score = 61.1 bits (148), Expect = 1e-11
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 12/97 (12%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
N S + ++L L C NP SWF + + L I
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST-----------QELFI 252
Query: 71 TRIRSEDAGRYECRGT-GVHKDVVSAFAEVSINLRPD 106
I ++G Y C+ + +++ P
Sbjct: 253 PNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPP 289
Score = 60.7 bits (147), Expect = 2e-11
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 11/76 (14%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
+ + S +L L C NP P SW + + L I
Sbjct: 560 DTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT-----------QVLFI 608
Query: 71 TRIRSEDAGRYECRGT 86
+I + G Y C +
Sbjct: 609 AKITPNNNGTYACFVS 624
Score = 56.9 bits (137), Expect = 3e-10
Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 12/95 (12%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
+ +L L C NP SW D L I
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT-----------QELFI 430
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
+ I +++G Y C+ S +I +
Sbjct: 431 SNITEKNSGLYTCQANNSA-SGHSRTTVKTITVSA 464
Score = 47.6 bits (113), Expect = 5e-07
Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 22/93 (23%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR-- 65
TI + V L L SW+K + + ++
Sbjct: 3 TIESTPFNVAEGKEVLLL------VHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQAT 56
Query: 66 --------------STLIITRIRSEDAGRYECR 84
++L+I I D G Y
Sbjct: 57 PGPAYSGREIIYPNASLLIQNIIQNDTGFYTLH 89
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 65.0 bits (158), Expect = 5e-13
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 2 SKGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQ- 60
++ + ++ + + + + ++ L+C +G P P+ W+K T + + +
Sbjct: 204 TEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLND 263
Query: 61 -FKKKRSTLIITRIRSEDAGRYECR 84
K+ TLII ED+G+Y C
Sbjct: 264 RVKQVSGTLIIKDAVVEDSGKYLCV 288
Score = 61.9 bits (150), Expect = 6e-12
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK 64
L T +V + C+ GNP+ VSW KD I +
Sbjct: 302 LTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS---------- 351
Query: 65 RSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSI 101
S L I ++ ED G Y+C + A AE+ +
Sbjct: 352 ESVLRIESVKKEDKGMYQCFVRNDR-ESAEASAELKL 387
Score = 52.6 bits (126), Expect = 8e-09
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED-- 77
+ + C+ GNP+P + W + + + ++ L+ R+ED
Sbjct: 14 IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP-GLRQISSDGKLVFPPFRAEDYR 72
Query: 78 ----AGRYECRGTGVHKDVVSAFAEVSINLRPD 106
A Y C ++S V +
Sbjct: 73 QEVHAQVYACLARNQFGSIISRDVHVRAVVAQY 105
Score = 48.8 bits (116), Expect = 2e-07
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 14/118 (11%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCK---GNPLPAVSWFKDNVE-----ITTNKR 56
+RA + + + V S + C + + VSW D E + +
Sbjct: 98 VRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGK 157
Query: 57 LKIQFKKKRSTLIITRIRSEDA-GRYECRGTGVH--KDVVSAFAEVSINLRPDNMGGP 111
+ L I + ED Y+CR + +SA + P + P
Sbjct: 158 YLVLPS---GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAP 212
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 60.2 bits (146), Expect = 1e-12
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCR-CKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
+ V R+ SV+ + +C +P + W + + N +L + L
Sbjct: 11 MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLH-----NGKLPSRAMDFNGILT 65
Query: 70 ITRIRSEDAGRYECRGT-GVHKDVVSAFAEV 99
I ++ DAG Y C G+ D +A V
Sbjct: 66 IRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 58.7 bits (142), Expect = 1e-12
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 111 PCP--LDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDV 151
CP D YCLNGG C + +++ C C GY G RC+++D+
Sbjct: 5 GCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRDL 47
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 58.7 bits (142), Expect = 1e-12
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 107 NMGGPCPL--DSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDV 151
N CPL D YCL+ G C Y + + + C C GY G+RC+ +D+
Sbjct: 1 NSDSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDL 47
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 60.0 bits (145), Expect = 2e-12
Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 13/114 (11%)
Query: 4 GLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPL---PAVSWFKDN-VEITTNKRLKI 59
G + + + + +VK+ + + + + K L P + WFK +++ + +
Sbjct: 1 GSSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL 60
Query: 60 QFKKKRS--------TLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
Q K+ + I + + AG Y C T K S ++ ++
Sbjct: 61 QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVHEST 113
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 61.5 bits (149), Expect = 2e-12
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 12/99 (12%)
Query: 18 RNVSVKLRQSLRLVCRCK--GNPLPAVSWFKDNVEITTNKRLKIQFKKKR---------S 66
N++ + L C+ + G P P V W +D + + Q S
Sbjct: 10 GNITGARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVS 68
Query: 67 TLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
L IT ++ D G+Y+C H+ VS V + P
Sbjct: 69 QLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLP 107
Score = 56.8 bits (137), Expect = 9e-11
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLIITR 72
+ + +V L C+ +G P P + W +D V + T + +L +
Sbjct: 110 LEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG-----HGPQRSLHVPG 164
Query: 73 IRSEDAGRYECRGTGVHKDVVSAFAEVSI 101
+ + C S A +++
Sbjct: 165 L--NKTSSFSCEAHNAKGVTTSRTATITV 191
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 62.0 bits (150), Expect = 5e-12
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 7/101 (6%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLP-AVSWFKDNVEITTNKRLKIQFKKKR---- 65
I V V +++ L+ + P P W N T + + +
Sbjct: 314 NIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRY 373
Query: 66 -STLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
S L +TR++ + G Y + + V +N +P
Sbjct: 374 VSELHLTRLKGTEGGTYTFLVSNSD-VNAAIAFNVYVNTKP 413
Score = 58.5 bits (141), Expect = 1e-10
Identities = 12/106 (11%), Positives = 35/106 (33%), Gaps = 7/106 (6%)
Query: 6 RATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFK-- 62
P+ + ++ + + C K +W ++N + ++
Sbjct: 207 AFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGD 266
Query: 63 ---KKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
++++TL I+ R D+G + C + + + +
Sbjct: 267 FNYERQATLTISSARVNDSGVFMCYANNTFG-SANVTTTLEVVDKG 311
Score = 46.6 bits (110), Expect = 1e-06
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P G ++ V++ +RL+C G V W + ++ T + ++ I
Sbjct: 37 PSIHPGKSDLIVRVGDEIRLLCTDPGF----VKWTFEILDETNENK--------QNEWIT 84
Query: 71 TRIRSEDAGRYECR 84
+ + + G+Y C
Sbjct: 85 EKAEATNTGKYTCT 98
Score = 45.8 bits (108), Expect = 2e-06
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 12/79 (15%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDN------------VEITTNKRLKIQFKKKR 65
++ + L C G P P + W+ V++ T F K
Sbjct: 414 EILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLV 473
Query: 66 STLIITRIRSEDAGRYECR 84
I + G EC+
Sbjct: 474 VQSSIDSSAFKHNGTVECK 492
Score = 45.4 bits (107), Expect = 3e-06
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 1/89 (1%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
R++ K + C +P K K L+ K +I + R+
Sbjct: 122 RSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYH 180
Query: 78 AGRYECRGTGVHKDVVSAFAEVSINLRPD 106
C K V+S + +
Sbjct: 181 RLCLHCSVDQEGKSVLSEKFILKVRPAFK 209
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 61.5 bits (149), Expect = 6e-12
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDN---VEITTNKRLKIQFKKKRST 67
P + ++ ++VC + K +EI N + + KK
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRA 246
Query: 68 LIITRIRSEDAGRYECRGT 86
L + + +DAG Y C +
Sbjct: 247 LSLNAVDFQDAGIYSCVAS 265
Score = 57.3 bits (138), Expect = 2e-10
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 3/96 (3%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKG-NPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
+ V+V Q L C +VS ++ K + + I
Sbjct: 90 HSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR--GFI 147
Query: 70 ITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
I + + D+ Y C+ ++ S + +N
Sbjct: 148 IRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVH 183
Score = 44.6 bits (105), Expect = 4e-06
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P+ + V+ +++ L C G+ V W + + STL
Sbjct: 5 PVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISP-----YWTLDPESPGSTLTT 55
Query: 71 TRIRSEDAGRYEC 83
++ G Y C
Sbjct: 56 RNATFKNTGTYRC 68
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 58.7 bits (142), Expect = 6e-12
Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 13/106 (12%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRS- 66
HP ++ V + L C+ +G P P + W+K + T+K +
Sbjct: 13 VEHP------SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 67 -TLIITRI-----RSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
+L RI D G Y C + VS A + +
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAH 112
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 60.8 bits (147), Expect = 6e-12
Identities = 24/162 (14%), Positives = 45/162 (27%), Gaps = 34/162 (20%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRS--------TLII 70
+V V +S++L C G P V W T Q + +
Sbjct: 10 DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITF 69
Query: 71 TRIRSEDAGRYECRGT-GVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCTYYDT 129
+ + +D G Y C + ++ +++ + P + S G
Sbjct: 70 SSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKP--TISVPSSVTIGNRAV---- 123
Query: 130 VGELVCQCAEGYKGQRCESKDVYNRSSMYKPYFSWIKGTVQI 171
L C +G +SW K + +
Sbjct: 124 ---LTCSEHDGSP----------------PSEYSWFKDGISM 146
Score = 58.4 bits (141), Expect = 4e-11
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCR-CKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR---- 65
P + + SV + L C G+P SWFKD + + T K +
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 164
Query: 66 ----STLIITRIRSEDAGRYEC 83
LI + + D+G Y C
Sbjct: 165 DPKSGDLIFDPVTAFDSGEYYC 186
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 59.1 bits (142), Expect = 4e-11
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRC-KGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
P + + + + L C ++W+K+N E+ + ++ + LI
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT---KYSQSGQNLI 185
Query: 70 ITRIRSEDAGRYECRGT 86
I ED+GRY+C
Sbjct: 186 IHNPELEDSGRYDCYVH 202
Score = 48.7 bits (115), Expect = 2e-07
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 10/89 (11%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPA----VSWFKDNVEITTNKRLKIQFKK 63
H ++ ++V + + + C L + W + I
Sbjct: 226 QDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILT 285
Query: 64 KR-----STLIITRIRSEDAGR-YECRGT 86
+TL + E G Y CRG
Sbjct: 286 SSGGITEATLYFENVTEEYIGNTYTCRGH 314
Score = 44.4 bits (104), Expect = 5e-06
Identities = 23/136 (16%), Positives = 36/136 (26%), Gaps = 14/136 (10%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNK----RLKIQFKKKRS 66
G N L + C + L + + + + K R + + K
Sbjct: 30 SCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNG 89
Query: 67 TLIITRIRSEDAG-RYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCT 125
L I S D+ RY C T + D V I P + P + +
Sbjct: 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCI--PETYELGTHDKYGID 147
Query: 126 YYDTVGELVCQCAEGY 141
L C
Sbjct: 148 -------LYCGILYAK 156
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 58.8 bits (142), Expect = 4e-11
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDN---VEITTNKRLKIQFKKKRST 67
P + ++ ++VC + + + N + I +K T
Sbjct: 187 PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLT 246
Query: 68 LIITRIRSEDAGRYECRGT 86
L + ++ + AG Y C +
Sbjct: 247 LNLDQVDFQHAGNYSCVAS 265
Score = 52.7 bits (126), Expect = 7e-09
Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 5/97 (5%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKG-NPLPAVSWFK-DNVEITTNKRLKIQFKKKRSTL 68
+ V V Q L C VS + + +
Sbjct: 90 RPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH---GF 146
Query: 69 IITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
I R + + Y+C + V+S + +
Sbjct: 147 TIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVI 183
Score = 42.6 bits (100), Expect = 2e-05
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 10/95 (10%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
P+ + + VK ++ L C G+ V W + + S L
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPP-----SPHWTLYSDGSSSILST 55
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
++ G Y C G SA + +
Sbjct: 56 NNATFQNTGTYRCTEPGDP-LGGSAAIHLYVKDPA 89
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 57.7 bits (139), Expect = 5e-11
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 17/106 (16%)
Query: 2 SKGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQF 61
+ + ++ + + QSL L P+V + +
Sbjct: 89 DQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK----- 143
Query: 62 KKKRSTLIITRIRSEDAGRYECRGTGVHKDV-------VSAFAEVS 100
TL ++++ +D+G + C K V V AF + S
Sbjct: 144 -----TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS 184
Score = 46.1 bits (109), Expect = 8e-07
Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 17/94 (18%)
Query: 26 QSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR-----------------STL 68
++ L C W N + K L
Sbjct: 11 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70
Query: 69 IITRIRSEDAGRYECRGTGVHKDVVSAFAEVSIN 102
II ++ ED+ Y C ++V ++ N
Sbjct: 71 IIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTAN 104
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 57.8 bits (139), Expect = 5e-11
Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
+ N +VK S+ L C + + W ++ + +R+ + S L
Sbjct: 110 VTQPFLQVTNTTVKELDSVTLTCL-SNDIGANIQWLFNSQSLQLTERMTLSQNN--SILR 166
Query: 70 ITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDN 107
I I+ EDAG Y+C + S ++ I P +
Sbjct: 167 IDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH 204
Score = 44.3 bits (104), Expect = 4e-06
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 16/96 (16%)
Query: 26 QSLRLVCRCKGNPLPAVSWFKDN----------VEITTNKRLKIQFKKKR------STLI 69
++ L+ L A +W+K N +N Q R +L+
Sbjct: 15 NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLL 74
Query: 70 ITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
I +D G Y T + A ++
Sbjct: 75 FQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPV 110
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 58.5 bits (141), Expect = 6e-11
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 18 RNVSVKLRQSLRLVCRC-----KGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITR 72
+ L S LVC + + W+KD++ + + K + + L++
Sbjct: 128 YPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNE-KFLSVRGTTHLLVHD 186
Query: 73 IRSEDAGRYECRGT---GVHKDVVSAFAEVSINLRPDN 107
+ EDAG Y C T + ++ E+ I + +
Sbjct: 187 VALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE 224
Score = 57.4 bits (138), Expect = 2e-10
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 10 HPIEVSGLRNVSVKLR-QSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTL 68
H L V LR + +P ++W K++ T + + + L
Sbjct: 24 HYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGAL 83
Query: 69 IITRIRSEDAGRYECR 84
+ ED+G Y C
Sbjct: 84 WLLPALQEDSGTYVCT 99
Score = 47.8 bits (113), Expect = 3e-07
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 17/91 (18%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCR---CKGNPLPAVSWFKDN----------VEITTNKRL 57
P+ +S L+ +S L L + C+ G PL + W+ N +T R
Sbjct: 227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQ 286
Query: 58 KIQFKKK---RSTLIITRIRSEDAGR-YECR 84
+ + LI + ED ++C
Sbjct: 287 EYSENNENYIEVPLIFDPVTREDLHMDFKCV 317
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 53.8 bits (129), Expect = 9e-11
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 111 PCPLD---SYCLNGGSCTYYDTVGELV--CQCAEGYKGQRCESKDV 151
CP YCLN C V C+CA G+ GQRCE K++
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEI 51
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain,
repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Length = 45
Score = 53.2 bits (127), Expect = 1e-10
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 109 GGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDV 151
G P D YCLNGG + +++ C C GY G RC+++D+
Sbjct: 2 GXPSSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTRDL 44
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 57.4 bits (138), Expect = 2e-10
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 7/104 (6%)
Query: 5 LRATIHPIEVS-GLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFK- 62
R + I VS V+ +++ L+C GN + W E F
Sbjct: 175 YRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLL 234
Query: 63 ----KKRSTLIITRIRSEDAGRYECRGT-GVHKDVVSAFAEVSI 101
RS L I ED+G Y C T V+ +++
Sbjct: 235 DMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278
Score = 48.9 bits (116), Expect = 2e-07
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDA 78
+ + + + L C G+ V W + + E + K Q S L +T + D
Sbjct: 9 ELVLNVSSTFVL--TCSGSA--PVVWERMSQEPPQ-EMAKAQDGTFSSVLTLTNLTGLDT 63
Query: 79 GRYECRGTGVHKDVVSAFAEVSINLRP 105
G Y C + I +
Sbjct: 64 GEYFCTHNDSRGLETDERKRLYIFVPD 90
Score = 35.1 bits (80), Expect = 0.007
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 10/88 (11%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
+ + + + CR P V+ + ++ + + +R I +
Sbjct: 103 LFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALP----VPYDHQRGFSGI-----FE 152
Query: 78 AGRYECRGTGVHKDVVSAFAEVSINLRP 105
Y C+ T ++V S V
Sbjct: 153 DRSYICKTTIGDREVDSDAYYVYRLQVS 180
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 55.7 bits (134), Expect = 2e-10
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 26 QSLRLVCRCKGN-PLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
Q L L C N + V ++KD + ++ + + IT ED+G Y C
Sbjct: 101 QPLFLRCHGWRNWDVYKVIYYKDGEAL--------KYWYENHNISITNATVEDSGTYYCT 152
Query: 85 GTGVHKDVVSAFAEVSINLRP 105
G D S +++ P
Sbjct: 153 GKVWQLDYESEPLNITVIKAP 173
Score = 46.0 bits (109), Expect = 8e-07
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 17/81 (20%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRS 66
+++P + +++ L C + WF + S
Sbjct: 8 SLNP------PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------S 51
Query: 67 TLIITRIRSEDAGRYECRGTG 87
+L I + ED+G Y+C+
Sbjct: 52 SLNIVNAKFEDSGEYKCQHQQ 72
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 54.8 bits (131), Expect = 2e-10
Identities = 19/95 (20%), Positives = 27/95 (28%), Gaps = 29/95 (30%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEIT------------------------- 52
+ V LRL G+P P V W K +
Sbjct: 26 DTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKK 85
Query: 53 ----TNKRLKIQFKKKRSTLIITRIRSEDAGRYEC 83
T R++++ K RS + ED G Y
Sbjct: 86 LLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTV 120
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 52.6 bits (126), Expect = 2e-10
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 111 PCPLD---SYCLNGGSCTYYDTVGELV--CQCAEGYKGQRCESKDV 151
CP YCLN C V C+CA G+ GQRCE K++
Sbjct: 6 KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEI 51
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 56.7 bits (136), Expect = 3e-10
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 6/77 (7%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLI 69
+ + G R ++L C+ NP W N + + R+
Sbjct: 233 EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ-----NRTLFF 287
Query: 70 ITRIRSEDAGRYECRGT 86
I AG Y C T
Sbjct: 288 KGPINYSLAGTYICEAT 304
Score = 47.1 bits (111), Expect = 6e-07
Identities = 25/183 (13%), Positives = 43/183 (23%), Gaps = 42/183 (22%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPA----VSWFKDN-----------------V 49
V ++ + + L C V+W K V
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 50 EITTNKRLKI-QFKKKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNM 108
+R++ + T+ ++R+ ED G Y C + +++ +P N
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134
Query: 109 GGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVYNRSSMYKPYFSWIKGT 168
G D V C A G SW
Sbjct: 135 IEGTQAVLRAKKGQD----DKVLVATCTSANGKP----------------PSVVSWETRL 174
Query: 169 VQI 171
Sbjct: 175 KGE 177
Score = 43.2 bits (101), Expect = 2e-05
Identities = 12/71 (16%), Positives = 18/71 (25%), Gaps = 3/71 (4%)
Query: 17 LRNVSVKLRQSLRLVCR-CKGNPLPAVSWFKDNVEITTNKRLKIQFKKK--RSTLIITRI 73
LR + + L C G P VSW + ++ S +
Sbjct: 142 LRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPS 201
Query: 74 RSEDAGRYECR 84
R C
Sbjct: 202 REAHQQSLACI 212
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 56.7 bits (136), Expect = 3e-10
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 1/74 (1%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
P + N SV + + L C+ +G L W +E + K +
Sbjct: 158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTL 216
Query: 70 ITRIRSEDAGRYEC 83
+ C
Sbjct: 217 ANVTSDLNRKNVTC 230
Score = 54.0 bits (129), Expect = 3e-09
Identities = 11/106 (10%), Positives = 30/106 (28%), Gaps = 8/106 (7%)
Query: 7 ATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKK--- 63
++ + ++ + + G P P++ W + + + +F +
Sbjct: 243 VQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAA 302
Query: 64 ----KRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
+ L + + + G Y SA + P
Sbjct: 303 NETVRHGCLRLNQPTHVNNGNYTLLAANPF-GQASASIMAAFMDNP 347
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 56.7 bits (136), Expect = 4e-10
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGR 80
L + + N LP + W+KD + + F + LI+ + + G
Sbjct: 120 DGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI---HFSGVKDRLIVMNVAEKHRGN 176
Query: 81 YECRGT 86
Y C +
Sbjct: 177 YTCHAS 182
Score = 53.6 bits (128), Expect = 4e-09
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 26 QSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
+ C N ++W+KD+ + + + + + L + ED+G Y C
Sbjct: 21 EIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCV 80
Score = 48.6 bits (115), Expect = 2e-07
Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 13/86 (15%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRL------------K 58
I + V L ++L+C G W + I + +
Sbjct: 210 VIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPAN 269
Query: 59 IQFKKKRSTLIITRIRSED-AGRYEC 83
+ + L I+ I S + C
Sbjct: 270 KRRSTLITVLNISEIESRFYKHPFTC 295
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 53.5 bits (128), Expect = 4e-10
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 12/95 (12%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPL---PAVSWFKDN-VEITTNKRLKIQFKKK----- 64
V ++ V + S+ R G L P V WFK V++++ +Q
Sbjct: 8 VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRAS 67
Query: 65 ---RSTLIITRIRSEDAGRYECRGTGVHKDVVSAF 96
L IT + G Y C + K S F
Sbjct: 68 KVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNF 102
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 53.7 bits (129), Expect = 4e-10
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 8/84 (9%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLP-AVSWFKDNVEITTNKRLKIQFKKK----- 64
P +S + + ++ C + P P ++W + + + +
Sbjct: 14 PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 73
Query: 65 -RSTLIITRIRSEDAGR-YECRGT 86
STL I+ I D Y C
Sbjct: 74 VISTLTISNIVRADFQTIYNCTAW 97
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 56.3 bits (135), Expect = 5e-10
Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 14/139 (10%)
Query: 3 KGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFK 62
+ + ++ + + QSL L P+V + +
Sbjct: 89 QKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK------ 142
Query: 63 KKRSTLIITRIRSEDAGRYECRGT-GVHKDVVSAFAEVSINLRP---DNMGGPCPLDSYC 118
TL ++++ +D+G + C K V + ++
Sbjct: 143 ----TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSF 198
Query: 119 LNGGSCTYYDTVGELVCQC 137
+ GEL Q
Sbjct: 199 PLAFTVEKLTGSGELWWQA 217
Score = 45.9 bits (108), Expect = 1e-06
Identities = 15/99 (15%), Positives = 25/99 (25%), Gaps = 17/99 (17%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR-------------- 65
V K ++ L C W N + K
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 66 ---STLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSI 101
LII ++ ED+ Y C ++V ++
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA 102
Score = 39.8 bits (92), Expect = 2e-04
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 13/76 (17%)
Query: 26 QSLRLVCRCKGNPLPAV--SWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYEC 83
L C G P + S +N E +KR K + + +AG ++C
Sbjct: 297 LQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKA-----------VWVLNPEAGMWQC 345
Query: 84 RGTGVHKDVVSAFAEV 99
+ + ++ + +V
Sbjct: 346 LLSDSGQVLLESNIKV 361
Score = 32.5 bits (73), Expect = 0.061
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 8/70 (11%)
Query: 23 KLRQSLRLVCRCKGNPLP----AVSWFKDNVEIT-TNKRLKIQFKKKRS---TLIITRIR 74
KL S L + + V + + K+Q KK TL +
Sbjct: 206 KLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQ 265
Query: 75 SEDAGRYECR 84
+G
Sbjct: 266 YAGSGNLTLA 275
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 53.2 bits (127), Expect = 6e-10
Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 16/105 (15%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVS--WFKDNVEITTNKRLKIQFKKKR 65
T+ P S + C + ++ W DN + + + +
Sbjct: 14 TVQP------ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQ 67
Query: 66 --------STLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSIN 102
+ L + + G Y+C + S A ++IN
Sbjct: 68 GGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 55.9 bits (134), Expect = 6e-10
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 7/77 (9%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLI 69
+ +SG N + L C + NP P +W + + + L+
Sbjct: 218 EVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ------GAQLL 271
Query: 70 ITRIRSEDAGRYECRGT 86
I + C T
Sbjct: 272 IRPVDKPINTTLICNVT 288
Score = 52.8 bits (126), Expect = 7e-09
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 4/78 (5%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCR-CKGNPLPAVSWFKDNVEITTNKRLKIQFKKK---RS 66
P + ++ V + C G P ++W D + ++ S
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTS 177
Query: 67 TLIITRIRSEDAGRYECR 84
I+ D C+
Sbjct: 178 LWILVPSSQVDGKNVTCK 195
Score = 51.3 bits (122), Expect = 2e-08
Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 23/121 (19%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPA-----VSWFKDN-------------VEITTNK 55
V V L S+ L C + + ++W + + +K
Sbjct: 4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63
Query: 56 RLKIQFKKKRS-----TLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGG 110
RL+ + + +L + +R ED G Y C + S + + +P N
Sbjct: 64 RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE 123
Query: 111 P 111
Sbjct: 124 V 124
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 53.4 bits (128), Expect = 7e-10
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 7/60 (11%)
Query: 32 CRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR-------STLIITRIRSEDAGRYECR 84
G P P++ W + + + +F + L + + + G Y
Sbjct: 22 FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLL 81
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 53.5 bits (128), Expect = 7e-10
Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 11/105 (10%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFK--------DNVEITTNKRLKIQFKKKRS-TL 68
++V+ Q+L L C ++ W + + N + ++ ++
Sbjct: 9 ETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSI 68
Query: 69 IITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCP 113
+ + +D G Y+C V + +V + P
Sbjct: 69 TVPNVTLQDEGVYKCLHYSDS--VSTKEVKVIVLATMKGEFCRYP 111
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 54.9 bits (131), Expect = 7e-10
Identities = 10/69 (14%), Positives = 23/69 (33%)
Query: 29 RLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGV 88
++ C P + W ++ I ++ K + + E +G Y C G
Sbjct: 130 TVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGS 189
Query: 89 HKDVVSAFA 97
+ + +
Sbjct: 190 KPEDANFYL 198
Score = 46.8 bits (110), Expect = 5e-07
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 13/89 (14%)
Query: 15 SGLRNVSVKLRQ---SLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIIT 71
G V V Q S+ L C ++WFKD I + +
Sbjct: 5 KGNHLVKVYDYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLTE-------DKKKWNLG 54
Query: 72 RIRSEDAGRYECRGTGVHKDVVSAFAEVS 100
+ G Y+C+G+ + + +
Sbjct: 55 SNAKDPRGMYQCKGSQNKSKPLQVYYRMG 83
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 54.4 bits (131), Expect = 7e-10
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 26 QSLRLVCRCKGN-PLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
+++ L C + PL V++F++ +F T I + +G Y C
Sbjct: 101 ETIMLRCHSWKDKPLVKVTFFQNGKSQ--------KFSHLDPTFSIPQANHSHSGDYHCT 152
Query: 85 GTGVHKDVVSAFAEVSI 101
G + S +++
Sbjct: 153 GNIGYTLFSSKPVTITV 169
Score = 43.3 bits (102), Expect = 6e-06
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
++V S+ L C+ +P + WF + I T+ + + D
Sbjct: 13 WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH----------TQPSYRFKANNND 62
Query: 78 AGRYECR 84
+G Y C+
Sbjct: 63 SGEYTCQ 69
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1;
immunoglobulin superfamily, integrin-binding, cell
adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3
b.1.1.4 PDB: 1ij9_A 1vsc_A
Length = 202
Score = 54.8 bits (131), Expect = 7e-10
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 12 IEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIIT 71
IE + ++ S+ L C G P SW + ++ N ++ + STL +
Sbjct: 3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSW-RTQIDSPLNGKVTNEG--TTSTLTMN 59
Query: 72 RIRSEDAGRYECRGT 86
+ + Y C T
Sbjct: 60 PVSFGNEHSYLCTAT 74
Score = 40.9 bits (95), Expect = 5e-05
Identities = 7/73 (9%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 19 NVSVKLRQSLRLVCRCKGN---PLPAVSWFKDNVEITTNKRLKIQ----FKKKRSTLIIT 71
+ ++ + + + C + K + + + + L+ + K + T
Sbjct: 100 SGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFT 159
Query: 72 RIRSEDAGRYECR 84
+ + CR
Sbjct: 160 PVIEDIGKVLVCR 172
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 55.4 bits (133), Expect = 8e-10
Identities = 14/77 (18%), Positives = 20/77 (25%), Gaps = 13/77 (16%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
E N + +C+ GNPLP + KD
Sbjct: 185 RLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL-------------PIGE 231
Query: 70 ITRIRSEDAGRYECRGT 86
+ + G Y CR
Sbjct: 232 SVTVTRDLEGTYLCRAR 248
Score = 38.5 bits (89), Expect = 4e-04
Identities = 19/135 (14%), Positives = 37/135 (27%), Gaps = 23/135 (17%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
P L V + + +C+ +P V+ + R+ L+
Sbjct: 98 FPAPNVILTKPEVSEGTEVTV--KCEAHPRAKVTLNGVPAQPLG----------PRAQLL 145
Query: 70 ITRIRSEDAGRYECRGT---GVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCTY 126
+ ++ + C T + E+ + P CP + T
Sbjct: 146 LKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQT- 204
Query: 127 YDTVGELVCQCAEGY 141
+CQ A G
Sbjct: 205 ------PMCQ-AWGN 212
Score = 28.9 bits (64), Expect = 0.87
Identities = 10/83 (12%), Positives = 20/83 (24%), Gaps = 5/83 (6%)
Query: 26 QSLRLVCRCKGN---PLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYE 82
+VC G V + + ++++ + E R
Sbjct: 19 TQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSV-TAEDEGTQRLT 77
Query: 83 CRGTGVHKDVVSAFAEVSINLRP 105
C + V+I P
Sbjct: 78 CAVI-LGNQSQETLQTVTIYSFP 99
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 55.3 bits (133), Expect = 8e-10
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 17/91 (18%)
Query: 26 QSLRLVCRCKGN-PLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
+ L L C + + V ++++ +F S L I + G Y C
Sbjct: 98 EPLALRCHAWKDKLVYNVLYYRNGKAF--------KFFHWNSNLTILKTNISHNGTYHCS 149
Query: 85 GTG--------VHKDVVSAFAEVSINLRPDN 107
G G + V F +N +
Sbjct: 150 GMGKHRYTSAGISVTVKELFPAPVLNASVTS 180
Score = 47.2 bits (112), Expect = 5e-07
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
VSV +++ L C P + WF + T+ + IT D
Sbjct: 10 WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS----------TPSYRITSASVND 59
Query: 78 AGRYECRGTG 87
+G Y C+
Sbjct: 60 SGEYRCQRGL 69
Score = 44.1 bits (104), Expect = 5e-06
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 13/82 (15%)
Query: 26 QSLRLVCRCKGNPLPAV-----SWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGR 80
+ L C K S++ + + + + S I R ED+G
Sbjct: 186 NLVTLSCETKLLLQRPGLQLYFSFYMGSKTL--------RGRNTSSEYQILTARREDSGL 237
Query: 81 YECRGTGVHKDVVSAFAEVSIN 102
Y C +V+ E+ +
Sbjct: 238 YWCEAATEDGNVLKRSPELELQ 259
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 52.8 bits (126), Expect = 1e-09
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 11/108 (10%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVS--WFKDNVEITTNKRLKIQFKKKR 65
I+ + +S + + + + L L C + + W + + K + K +
Sbjct: 6 RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 65
Query: 66 --------STLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
STL I + D G Y C + V ++ +P
Sbjct: 66 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL-MTKKNSTFVRVHEKP 112
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 53.9 bits (129), Expect = 2e-09
Identities = 13/94 (13%), Positives = 19/94 (20%), Gaps = 8/94 (8%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDN----VEITTNKRLKIQFKKKRS 66
L + C P P V W N + + S
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS 164
Query: 67 TLIITRIRSEDAGRYECRGTG----VHKDVVSAF 96
+ + C G H VS +
Sbjct: 165 VAVDLSLPKPWHLPVTCVGKNDKEEAHGVYVSGY 198
Score = 49.6 bits (118), Expect = 6e-08
Identities = 22/142 (15%), Positives = 33/142 (23%), Gaps = 31/142 (21%)
Query: 20 VSVKLRQSLRLVC---RCKGNPLPAVSWFKDNVEITT-----------------NKRLKI 59
V+ L + + L R P VSWFK I
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 60 QFKKKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCL 119
L++T G Y CR V+ +S+ S
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGE-TEVTKQEHLSVVKPLTLSVH--SERSQFP 117
Query: 120 NGGSCTYYDTVGELVCQCAEGY 141
+ T + C +
Sbjct: 118 DFSVLT-------VTCT-VNAF 131
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 54.1 bits (129), Expect = 2e-09
Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 21/97 (21%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRS---- 66
+ VS V V + + C C V+W+ + Q ++
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGI 196
Query: 67 -----------------TLIITRIRSEDAGRYECRGT 86
L+I + DAGR C
Sbjct: 197 TWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELA 233
Score = 46.8 bits (110), Expect = 6e-07
Identities = 25/189 (13%), Positives = 42/189 (22%), Gaps = 50/189 (26%)
Query: 18 RNVSVKLRQSLRLVCRC---KGNPLPAVSWFKDNVEITTNKRLKIQFKKKRS-------- 66
V V ++ L C P +SW K + K K + +
Sbjct: 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69
Query: 67 ---------------------TLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
TL +T + +D GRY C+ S+ L+
Sbjct: 70 SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129
Query: 106 DNMGGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVYNRSSMYKPYFSWI 165
+ + + + C +W
Sbjct: 130 TGHTPSNNVHVSTAEVVQVDEGNDI-TMTCP-CTDC----------------ANANVTWY 171
Query: 166 KGTVQIFNY 174
G NY
Sbjct: 172 TGPTFFENY 180
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 54.3 bits (131), Expect = 2e-09
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNK---RLKIQFKKKRST 67
I + V V +++ VCR G+P PA+ W + + K RL + T
Sbjct: 386 RIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVF---PDGT 442
Query: 68 LIITRIRSEDAGRYEC 83
L + + +D G Y C
Sbjct: 443 LEVRYAQVQDNGTYLC 458
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 53.5 bits (128), Expect = 2e-09
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCK-GNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
P + S ++ +L C K G+ W K + T + +
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAE--MTSPVIS 179
Query: 70 ITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
+ SE +G Y C V V S + +++ P
Sbjct: 180 VKNASSEYSGTYSCT---VQNRVGSDQCMLRLDVVP 212
Score = 45.8 bits (108), Expect = 1e-06
Identities = 22/177 (12%), Positives = 49/177 (27%), Gaps = 54/177 (30%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPA----VSWFKDNVEITTNKRLKIQFKKKR--------- 65
+ ++ L C+ +P + W + ++ I + +
Sbjct: 9 RIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDL 68
Query: 66 ---------------STLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGG 110
+++ +T ++ D G Y+C+ V + +++ ++P
Sbjct: 69 KGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAP-GVANKKFLLTVLVKPSGT-- 125
Query: 111 PCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVYNRSSMYKPYFSWIKG 167
C +D G L C+ EG F W K
Sbjct: 126 RCFVDGSEEIGNDFK-------LKCEPKEGSL----------------PLQFEWQKL 159
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 54.1 bits (129), Expect = 2e-09
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 7/85 (8%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVH 89
+ + P ++W+ +I + L + G Y C T
Sbjct: 145 VDGYFPSSVKPTITWYMGCYKIQNFNN----VIPEGMNLSFLIALISNNGNYTCVVTYPE 200
Query: 90 KDV---VSAFAEVSINLRPDNMGGP 111
++ V + P N P
Sbjct: 201 NGRTFHLTRTLTVKVVGSPKNAVPP 225
Score = 46.0 bits (108), Expect = 2e-06
Identities = 20/145 (13%), Positives = 39/145 (26%), Gaps = 24/145 (16%)
Query: 14 VSGLRNVSVKLRQSLRLVCR-----------CKGNPLPAVSWFKDNVEITTNKRLKIQFK 62
+ +R + V + R+ C + + W+ + + + +
Sbjct: 11 LDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLP 70
Query: 63 KKR-----STLIITRIRSEDAGRYECR-GTGVHKDVVSAFAEVSINLRPDNMGGPCPLDS 116
+ R L D G Y C + V+ EV N P+
Sbjct: 71 ENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHK 130
Query: 117 YCLNGGSCTYYDTVGELVCQCAEGY 141
+ G + C +GY
Sbjct: 131 LYIEYGI-------QRITCPNVDGY 148
Score = 40.2 bits (93), Expect = 2e-04
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 15/80 (18%)
Query: 20 VSVKLRQSLRLVCR----CKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR---------- 65
+ + L + C + V W D + +
Sbjct: 236 YEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRT 295
Query: 66 STLIITRIRSEDAGR-YECR 84
L I ++ SED R Y C
Sbjct: 296 QILSIKKVTSEDLKRSYVCH 315
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 51.6 bits (123), Expect = 8e-09
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEI------TTNKRL 57
++ P + + + ++ LVC+ + P +W+K + R
Sbjct: 78 IQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRF 137
Query: 58 KIQFKKKRSTLIITRIRSE-DAGRYECRGT 86
+ + RS L I + E D G+Y C GT
Sbjct: 138 FVSSSQGRSELHIENLNMEADPGQYRCNGT 167
Score = 51.2 bits (122), Expect = 1e-08
Identities = 9/71 (12%), Positives = 14/71 (19%), Gaps = 9/71 (12%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVS--WFKDNVEITTNKRLKIQFKKKRSTLIITRIRSE 76
L + L C + W K V + + +
Sbjct: 7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA-------LPGQKTEFKVDSDD 59
Query: 77 DAGRYECRGTG 87
G Y C
Sbjct: 60 QWGEYSCVFLP 70
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 50.6 bits (121), Expect = 1e-08
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 26 QSLRLVCRCKGN-PLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
+ L C N L V++ ++ + ++ S I + +D+G Y CR
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNGKDR--------KYFHHNSDFHIPKATLKDSGSYFCR 155
Query: 85 GTGVHKDVVSAFAEVSI 101
G K+V S ++I
Sbjct: 156 GLVGSKNVSSETVNITI 172
Score = 46.4 bits (110), Expect = 5e-07
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 17/81 (20%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRS 66
+ P + SV + S+ L C+ +P WF + I++
Sbjct: 11 FLEP------QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS---------- 54
Query: 67 TLIITRIRSEDAGRYECRGTG 87
+ I D+G Y C+
Sbjct: 55 SYFIDAATVNDSGEYRCQTNL 75
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 52.1 bits (125), Expect = 2e-08
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFK-KKRSTL 68
P + R++++ + L CR P+ +V W N + ++ + TL
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409
Query: 69 IITRIRSEDAGRYEC 83
+ + D G Y C
Sbjct: 410 NFSHVLLSDTGVYTC 424
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 51.7 bits (123), Expect = 2e-08
Identities = 10/89 (11%), Positives = 20/89 (22%), Gaps = 3/89 (3%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFK-DNVEITTNKRLKIQFKKKRSTLIITRIRSE 76
+ K + C + S + D + T+ K I R+
Sbjct: 99 LPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLT--FVPNPKAGITIKNVKRAY 156
Query: 77 DAGRYECRGTGVHKDVVSAFAEVSINLRP 105
C + S + +
Sbjct: 157 HRLCVRCAAQRDGTWLHSDKFTLKVREAI 185
Score = 49.0 bits (116), Expect = 1e-07
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQ-------FK 62
P+ + +K + +VC K W K N + ++K
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNY 248
Query: 63 KKRSTLIITRIRSEDAGRYECRGT 86
+++ TL I+ R +D+G + C
Sbjct: 249 ERQETLTISSARVDDSGVFMCYAN 272
Score = 37.8 bits (87), Expect = 8e-04
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 11/66 (16%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDA 78
+ V+ +L L C V W + K++ I + +
Sbjct: 21 ELIVEAGDTLSLTCIDPDF----VRWTFKTYFNEMVEN-------KKNEWIQEKAEATRT 69
Query: 79 GRYECR 84
G Y C
Sbjct: 70 GTYTCS 75
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 51.7 bits (124), Expect = 2e-08
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFK-KKRSTLIITRIRSE 76
+++V + L CR L +VSW N + T+ K++ TL T + +
Sbjct: 349 ADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQ 407
Query: 77 DAGRYEC 83
D G Y C
Sbjct: 408 DTGMYTC 414
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 50.9 bits (121), Expect = 2e-08
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 11/111 (9%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAV--SWFKDNVEITTNKRLKIQFK 62
+ I+ + +S + + + + L L C + + +W + + K + K
Sbjct: 100 VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 159
Query: 63 KK--------RSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
+ STL I + D G Y C + V ++ P
Sbjct: 160 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL-MTKKNSTFVRVHEDP 209
Score = 30.9 bits (69), Expect = 0.15
Identities = 9/76 (11%), Positives = 18/76 (23%), Gaps = 1/76 (1%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
+ G+ ++ +++ + C VS E + I
Sbjct: 10 VSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTI 68
Query: 71 TRIRSEDAGRYECRGT 86
AG C
Sbjct: 69 PSYMISYAGMVFCEAK 84
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease, polymorphism,
protease, zinc; 2.30A {Homo sapiens} PDB: 1yuf_A 1yug_A
2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 47.5 bits (113), Expect = 2e-08
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 111 PCP--LDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDV 151
CP +C +G +C + + C C GY G RCE D+
Sbjct: 7 DCPDSHTQFCFHG-TCRFLVQEDKPACVCHSGYVGARCEHADL 48
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 48.7 bits (116), Expect = 2e-08
Identities = 16/97 (16%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEI--------TTNKRLKIQFKKKRS-TL 68
+NV+V + L CR N ++ W + + R+++ ++
Sbjct: 14 QNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSI 73
Query: 69 IITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
++ + D G+Y C + V ++ A +++ P
Sbjct: 74 SVSDVSLSDEGQYTCSLFTMP--VKTSKAYLTVLGVP 108
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 50.3 bits (120), Expect = 3e-08
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 26 QSLRLVCRCKGN-PLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
+ L C N L V++ ++ ++ S I + +D+G Y CR
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNGKGR--------KYFHHNSDFYIPKATLKDSGSYFCR 155
Query: 85 GTGVHKDVVSAFAEVSINLRP 105
G K+V S +++I
Sbjct: 156 GLVGSKNVSSETVQITITQGL 176
Score = 45.6 bits (108), Expect = 1e-06
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDA 78
V + S+ L C+ +P WF + I++ + I +D+
Sbjct: 17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS----------SYFIDAATVDDS 66
Query: 79 GRYECRGTG 87
G Y C+
Sbjct: 67 GEYRCQTQL 75
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 51.0 bits (122), Expect = 3e-08
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
L +L + C K + V N ++ + + L +++ ED
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVR-NGDLFFKKVQVED 312
Query: 78 AGRYEC 83
G Y C
Sbjct: 313 GGVYTC 318
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 50.6 bits (120), Expect = 5e-08
Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 13/76 (17%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
E N + +C+ GNPLP + KD
Sbjct: 371 LDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL-------------PIGES 417
Query: 71 TRIRSEDAGRYECRGT 86
+ + G Y CR
Sbjct: 418 VTVTRDLEGTYLCRAR 433
Score = 40.6 bits (94), Expect = 1e-04
Identities = 8/82 (9%), Positives = 19/82 (23%), Gaps = 12/82 (14%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK 64
+ P L V + + C ++
Sbjct: 278 VTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLG------------P 325
Query: 65 RSTLIITRIRSEDAGRYECRGT 86
R+ L++ ++ + C T
Sbjct: 326 RAQLLLKATPEDNGRSFSCSAT 347
Score = 38.3 bits (88), Expect = 6e-04
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 6/69 (8%)
Query: 19 NVSVKLRQSLRLVCRCKG-NPLPA--VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRS 75
+ ++L L C+ +G P V + E+ + + T + R
Sbjct: 95 PSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG---EPAEVTTTVLVRRD 151
Query: 76 EDAGRYECR 84
+ CR
Sbjct: 152 HHGANFSCR 160
Score = 31.0 bits (69), Expect = 0.17
Identities = 10/99 (10%), Positives = 30/99 (30%), Gaps = 14/99 (14%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRST 67
++ P V + S+ + C + + E K+ + R
Sbjct: 3 SVSP------SKVILPRGGSVLVTCSTSCDQPMLLGI-----ETPLPKKELLLPGNNRKV 51
Query: 68 LIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
++ ++ + + C +A +++ P+
Sbjct: 52 YELSNVQ--EDSQPMCYSNC-PDGQSTAKTFLTVYWTPE 87
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 46.3 bits (110), Expect = 5e-08
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 111 PCP--LDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVY 152
CP YC+ G C + C C EGY G RCE D++
Sbjct: 7 RCPKQYKHYCIKG-RCRFVVAEQTPSCVCDEGYIGARCERVDLF 49
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 49.7 bits (118), Expect = 5e-08
Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 23/133 (17%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKR---------LKIQFKKKRSTLI 69
+V + S+ L C + + +++ N L+ Q ++
Sbjct: 11 VYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFH 70
Query: 70 ITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCTYYDT 129
I ++ D+G+Y C V +A+ + ++ + G
Sbjct: 71 IPSVQVRDSGQYRCL---VICG--AAWDYKYLTVKVKASYMRIDTRILEVPGT------- 118
Query: 130 VGELVCQC-AEGY 141
GE+ C A GY
Sbjct: 119 -GEVQLTCQARGY 130
Score = 42.7 bits (100), Expect = 1e-05
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
R + V ++L C+ +G PL VSW +V T+ + + R++ +
Sbjct: 111 RILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPE--GLYQVTSVLRLKPQP 168
Query: 78 AGRYECR 84
+ + C
Sbjct: 169 SRNFSCM 175
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 46.9 bits (111), Expect = 2e-07
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTN----------KRLKIQFKK 63
V+GL +V V + +WF + E+ +N R +I+ K
Sbjct: 12 VAGLEDVQVYDGEDAVFSLDLSTII--QGTWFLNGEELKSNEPEGQVEPGALRYRIEQKG 69
Query: 64 KRSTLIITRIRSEDAGRY 81
+ LI+ ++ +D+G
Sbjct: 70 LQHRLILHAVKHQDSGAL 87
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 48.7 bits (115), Expect = 2e-07
Identities = 18/111 (16%), Positives = 29/111 (26%), Gaps = 14/111 (12%)
Query: 19 NVSVKLRQSLRLVCRCKGN-PLPA---VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIR 74
L G+ PLP+ +W KD+ N +TL +
Sbjct: 11 KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT----------ATLTVADAT 60
Query: 75 SEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCT 125
SE+AG Y+ + + P Y +
Sbjct: 61 SENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111
Score = 46.4 bits (109), Expect = 1e-06
Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 20/138 (14%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCK---GNPLPAV-----SWFKDNVEITTNKRLKIQFK 62
+ ++ ++ V + + L K G SW K I T
Sbjct: 93 IVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT-------- 144
Query: 63 KKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGG 122
+ I ++ G Y + G +D ++ A I L N+ G
Sbjct: 145 ---QDITIQEFTADKNGVYTVKVWGESEDSAAS-ASTKIMLATMNVDQDVVESKTVALGN 200
Query: 123 SCTYYDTVGELVCQCAEG 140
+ V E + + G
Sbjct: 201 EISLNYVVSEDIVGDSSG 218
Score = 33.3 bits (75), Expect = 0.028
Identities = 13/103 (12%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAV--SWF--KDNVEITTNKRLKIQFKK 63
+ V+ +S+ S +V G P + +W+ ++ T ++
Sbjct: 190 VVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEAL 249
Query: 64 KRST------LIITRIRSEDAGRYECRGTGVHKDVVSAFAEVS 100
+ + L +D ++ C +++ + EV+
Sbjct: 250 EGFSITPDGHLFKESATYDDTAKFWCVAK-LYQQIEDETVEVA 291
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 47.3 bits (112), Expect = 2e-07
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 14/102 (13%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRS---- 66
V G + +L + + + V W + + + KR F K +
Sbjct: 3 SGTVWGALGHGI----NLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL 58
Query: 67 ---TLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
L I + +D+G Y V+ + +++LR
Sbjct: 59 ANGDLKIKNLTRDDSGTYNVT---VYSTNGTRILNKALDLRI 97
Score = 34.9 bits (80), Expect = 0.006
Identities = 3/55 (5%), Positives = 14/55 (25%), Gaps = 11/55 (20%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
L C + ++ + + ++ + ++C+
Sbjct: 115 LTCEVLEGTDVELKLYQGKEHLRSL-----------RQKTMSYQWTNLRAPFKCK 158
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo
sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 43.7 bits (103), Expect = 5e-07
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 111 PCP--LDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C ++ YCL+G C Y + + C+C GY G RCE
Sbjct: 5 KCSSDMNGYCLHGQ-CIYLVDMSQNYCRCEVGYTGVRCE 42
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 44.4 bits (105), Expect = 6e-07
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 115 DSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
+ C NGG+C + VCQC EG+ G+ CE
Sbjct: 53 EPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 46.9 bits (110), Expect = 1e-06
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 8/115 (6%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEI-TTNKRLKIQFKKKRS--TLIITRIRSE 76
+ ++ + +CR V R+ + + K +++IT +R E
Sbjct: 241 LGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKE 300
Query: 77 DAGRYECR-GTGVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGS----CTY 126
DAGRY C + S + + ++ P + G S C Y
Sbjct: 301 DAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPY 355
Score = 40.0 bits (92), Expect = 2e-04
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 19/93 (20%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDN---------VEITTNKRLKIQ 60
V S+ ++C ++ ++ + + + +K Q
Sbjct: 331 ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQ 390
Query: 61 FKKKRS----------TLIITRIRSEDAGRYEC 83
++ + S T+I+ ++ S DAG Y C
Sbjct: 391 YEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWC 423
Score = 39.2 bits (90), Expect = 3e-04
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 19/90 (21%)
Query: 14 VSGLRNVSVKLRQSLRLVCRCK---GNPLPAVSWFKDNVE------ITTNKRLKIQFKKK 64
+ G V+ S+ + C N W + I++ + ++ +
Sbjct: 4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 63
Query: 65 RS----------TLIITRIRSEDAGRYECR 84
+ + I ++ +D+GRY+C
Sbjct: 64 ANLTNFPENGTFVVNIAQLSQDDSGRYKCG 93
Score = 38.4 bits (88), Expect = 6e-04
Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 18/120 (15%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWF--------------KDNVEITTNK 55
P ++ + +V L +++ + C K V
Sbjct: 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTG 171
Query: 56 RLKIQFKKKRS---TLIITRIRSEDAGRYECR-GTGVHKDVVSAFAEVSINLRPDNMGGP 111
R+++ + +++I ++R DAG+Y C+ G + + +A +V
Sbjct: 172 RIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL 231
Score = 38.1 bits (87), Expect = 0.001
Identities = 15/117 (12%), Positives = 34/117 (29%), Gaps = 11/117 (9%)
Query: 1 MSKGLRATIHPIEVSGLRNVSVKLRQSLRLVCRC----KGNPLPAVSWFKDNVEITTNKR 56
+ ++ + NV+ L ++L++ C W + ++
Sbjct: 433 TTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQD 492
Query: 57 LK-------IQFKKKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPD 106
+ +L + + D G Y C H +A V++ R
Sbjct: 493 EGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKA 549
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 44.8 bits (105), Expect = 1e-06
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 12/91 (13%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPL---PAVSWFKDN---VEITTNKRLKIQFKKKRST---- 67
+VSV+ + +V + G L P + WFK + + R + ++
Sbjct: 20 DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYT 79
Query: 68 --LIITRIRSEDAGRYECRGTGVHKDVVSAF 96
L I ++ D G Y F
Sbjct: 80 VELHIGKVVLGDRGYYRLEVKAKDTCDSCGF 110
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 43.2 bits (101), Expect = 1e-06
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 111 PCPL--DSYCLNGGSCTYYDTVGELV---CQCAEGYKGQRCESKDVYNRSSMYK 159
C ++C+NGG C + C+C G+ G RC + K
Sbjct: 5 KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEK 58
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 45.8 bits (108), Expect = 1e-06
Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 32/153 (20%)
Query: 12 IEVSGLRNVSVKLRQSLRLVCRCKGNPLPA-----VSWFKD-------------NVEITT 53
+ V V L S+ L C + + ++W + +
Sbjct: 1 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 60
Query: 54 NKRLKIQFKKKRS-----TLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNM 108
+KRL+ + + +L + +R ED G Y C + S + + +P N
Sbjct: 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQN- 119
Query: 109 GGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGY 141
+ L G V C G
Sbjct: 120 --TAEVQKVQLTGEP------VPMARCVSTGGR 144
Score = 36.2 bits (83), Expect = 0.002
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKG-NPLPAVSWFKDNVEITTNKRLKIQFKK 63
LR P + ++ V + C G P ++W D + ++
Sbjct: 111 LRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSG 170
Query: 64 K---RSTLIITRIRSEDAGRYECR 84
S I+ D + C+
Sbjct: 171 TVTVTSLWILVPSSQVDGKQVTCK 194
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 42.5 bits (101), Expect = 1e-06
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
CLNGGSC D + C C G++G+ CE
Sbjct: 11 CLNGGSCK--DDINSYECWCPFGFEGKNCE 38
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 43.6 bits (102), Expect = 1e-06
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 111 PCPLD--SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
PC +C++G C Y + C C GY G+RC
Sbjct: 39 PCLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGERCH 76
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 46.3 bits (109), Expect = 2e-06
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 3/105 (2%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR---S 66
++NV V Q C G + + +++ +I+ R +
Sbjct: 164 RTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 223
Query: 67 TLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGP 111
+ + DAG+Y C +S +AE+ + P + P
Sbjct: 224 SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPP 268
Score = 34.8 bits (79), Expect = 0.010
Identities = 18/118 (15%), Positives = 25/118 (21%), Gaps = 15/118 (12%)
Query: 27 SLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQ---FKKKRSTLIITRIRSEDAGRYEC 83
L + + PL W T R ++ F +I I S G
Sbjct: 93 LLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAI 152
Query: 84 RGTGVHK------------DVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCTYYDT 129
V V A + +G D L G
Sbjct: 153 DEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPL 210
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 44.9 bits (106), Expect = 2e-06
Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFK--DNVEITTNKRLKIQFKKKRS- 66
+ +E G + +L + + + + W K D +I ++ K FK+K +
Sbjct: 5 NALETWGALGQDI----NLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTY 60
Query: 67 ------TLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLR 104
TL I ++++D Y+ ++ E +L+
Sbjct: 61 KLFKNGTLKIKHLKTDDQDIYKVS---IYDTKGKNVLEKIFDLK 101
Score = 41.0 bits (96), Expect = 4e-05
Identities = 7/54 (12%), Positives = 21/54 (38%), Gaps = 11/54 (20%)
Query: 30 LVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYEC 83
L C P ++ ++D + ++R +I + + + +++C
Sbjct: 120 LTCEVMNGTDPELNLYQDGKHLKLSQR-----------VITHKWTTSLSAKFKC 162
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 45.0 bits (106), Expect = 2e-06
Identities = 19/138 (13%), Positives = 47/138 (34%), Gaps = 21/138 (15%)
Query: 19 NVSVKLRQSLRLVCRCKGNPL----PAVSWFKDNVEITT----NKRLKIQFK-------K 63
+V+ ++++ L C + + W K+ + T + + ++K
Sbjct: 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT 62
Query: 64 KRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGS 123
+++I +R D G YEC KD + L + + + +
Sbjct: 63 NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSN 122
Query: 124 CTYYDTVGELVCQCAEGY 141
+ ++C + G+
Sbjct: 123 ------IRRIICSTSGGF 134
Score = 29.6 bits (66), Expect = 0.47
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 17 LRNVSVKLRQSLRLVCRCKG-NPLPAVSWFKDNVEITTNKRLKIQFKKK-----RSTLII 70
+ + + R++C G P P +SW ++ E+ Q + S L
Sbjct: 113 ISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKL-- 170
Query: 71 TRIRSEDAGRYECR 84
+ C
Sbjct: 171 -DFNMTTNHSFMCL 183
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 44.9 bits (105), Expect = 4e-06
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 8/101 (7%)
Query: 18 RNVSVKLRQSLRLVCRCK-GNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSE 76
++ S+ L C V W ++ L++ ++
Sbjct: 14 GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG---RRLLLRSVQLH 70
Query: 77 DAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPLDSY 117
D+G Y C G + + +++ P+ C S
Sbjct: 71 DSGNYSCYRAG----RPAGTVHLLVDVPPEEPQLSCFRKSP 107
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 43.2 bits (102), Expect = 4e-06
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCESK 149
C NGG C G C+C +G+ C S
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSV 39
Score = 43.2 bits (102), Expect = 6e-06
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCESK 149
C NGG CT D V C+C + G+ C+ K
Sbjct: 105 CKNGGICT--DLVANYSCECPGEFMGRNCQYK 134
Score = 40.1 bits (94), Expect = 6e-05
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 118 CLNGGSCT-----YYDTVGELVCQCAEGYKGQRCE 147
C NGG+C DT VC+C G+ G C+
Sbjct: 60 CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ 94
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 42.6 bits (101), Expect = 8e-06
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C + G C +T+G CQC +GY G RCE
Sbjct: 15 CEHAGKCI--NTLGSFECQCLQGYTGPRCE 42
Score = 41.4 bits (98), Expect = 2e-05
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C N +C D +GE C C GY+G CE
Sbjct: 53 CQNDATCL--DQIGEFQCICMPGYEGVHCE 80
Score = 40.7 bits (96), Expect = 4e-05
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
CL+ G C D + E C+C G+ G C+
Sbjct: 91 CLHNGRCL--DKINEFQCECPTGFTGHLCQ 118
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like
domain, CRDGF, cytokine, glycoprotein, membrane,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 50
Score = 40.3 bits (94), Expect = 9e-06
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 111 PCPLD--SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESK 149
PC + ++C++G C Y + + + C+C + Y G+RC K
Sbjct: 11 PCNAEFQNFCIHG-ECKYIEHLEAVTCKCQQEYFGERCGEK 50
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 41.5 bits (98), Expect = 2e-05
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C N G C D +GE C C EG++G+ CE
Sbjct: 50 CQNQGKCK--DGLGEYTCTCLEGFEGKNCE 77
Score = 38.8 bits (91), Expect = 2e-04
Identities = 7/30 (23%), Positives = 9/30 (30%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C + +VC CA GY
Sbjct: 89 GDCDQFCH--EEQNSVVCSCARGYTLADNG 116
Score = 33.4 bits (77), Expect = 0.015
Identities = 3/30 (10%), Positives = 8/30 (26%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C+ Y+ E+ + +
Sbjct: 12 CMEETCS--YEEAREVFEDSDKTNEFWNKY 39
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 42.8 bits (101), Expect = 2e-05
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 109 GGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
G PC CL+ GSC D++ C C+ GY+G CE
Sbjct: 5 GSPCI-SQPCLHNGSCQ--DSIWGYTCTCSPGYEGSNCE 40
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 41.7 bits (97), Expect = 2e-05
Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEI--------TTNKRLKIQFKKKRS-TL 68
+ +V ++ L C+ K + ++ W + + R+++ ++
Sbjct: 46 SDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSI 105
Query: 69 IITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDN 107
I+ + D G Y C + V +A + V++ P
Sbjct: 106 SISNVALADEGEYTCSIFTMP--VRTAKSLVTVLGIPQK 142
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 41.1 bits (96), Expect = 2e-05
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 14/85 (16%)
Query: 13 EVSGLRNVSVKLRQSLRLVCRCKGNPLPA--VSWFKDNVEITT-----------NKRLKI 59
+ N+S + S+ L C V+W + + + + + ++
Sbjct: 6 TIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRV 65
Query: 60 QFKKKRSTLIITRIRSEDAGRYECR 84
L + + D G Y C
Sbjct: 66 APGPG-LGLTLQSLTVNDTGEYFCI 89
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 41.5 bits (98), Expect = 2e-05
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C NGGSC D + +C C ++G+ CE
Sbjct: 55 CQNGGSCK--DQLQSYICFCLPAFEGRNCE 82
Score = 33.1 bits (76), Expect = 0.017
Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 118 CLNGGSCTY-YDTVGEL-VCQCAEGYKGQRCE 147
NGG Y D G C+C EGY
Sbjct: 93 NENGGCEQYCSDHTGTKRSCRCHEGYSLLADG 124
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 42.3 bits (99), Expect = 2e-05
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKK 64
++ +++ V + L C+ +G P V W + ++ + K K++
Sbjct: 111 VKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKRE 170
Query: 65 RSTLIIT---RIRSEDAGRYECR 84
+T RI + + C
Sbjct: 171 EKLFNVTSTLRINTTTNEIFYCT 193
Score = 36.1 bits (83), Expect = 0.002
Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 28/117 (23%)
Query: 57 LKIQFKKKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPLDS 116
LK Q + L IT ++ +DAG Y C + + +++ + +
Sbjct: 71 LKDQLSLGNAALQITDVKLQDAGVYRCM---ISYGGAD-YKRITVKVNAPYNKINQRILV 126
Query: 117 YCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVYNRSSMYKPYFSWIKGTVQIFN 173
L CQ AEGY K W Q+ +
Sbjct: 127 VDPVTSEHE-------LTCQ-AEGY----------------PKAEVIWTSSDHQVLS 159
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 40.9 bits (96), Expect = 6e-05
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C N G C D +GE C C EG++G+ CE
Sbjct: 50 CQNQGKCK--DGLGEYTCTCLEGFEGKNCE 77
Score = 39.0 bits (91), Expect = 3e-04
Identities = 7/30 (23%), Positives = 9/30 (30%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C + +VC CA GY
Sbjct: 89 GDCDQFCH--EEQNSVVCSCARGYTLADNG 116
Score = 29.0 bits (65), Expect = 0.56
Identities = 4/37 (10%), Positives = 10/37 (27%), Gaps = 2/37 (5%)
Query: 111 PCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
L+ C+ Y+ E+ + +
Sbjct: 5 KGHLERECMEETCS--YEEAREVFEDSDKTNEFWNKY 39
Score = 28.2 bits (63), Expect = 1.1
Identities = 3/34 (8%), Positives = 4/34 (11%), Gaps = 2/34 (5%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDV 151
C + G K
Sbjct: 127 CGKQTLER--RKRSVAQATSSSGEAPDSITWKPY 158
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 40.0 bits (94), Expect = 7e-05
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
CLNGG C D + C C G++G+ CE
Sbjct: 56 CLNGGLCK--DDINSYECWCQVGFEGKNCE 83
Score = 35.8 bits (83), Expect = 0.002
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
T +++C C GY+ +
Sbjct: 94 RCKQFCKT--GADSKVLCSCTTGYRLAPDQ 121
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction
immunology, IGSF, cell SU receptor signalling,
glycosylation, membrane protein; HET: NAG; 2.90A {Homo
sapiens}
Length = 118
Score = 39.4 bits (92), Expect = 7e-05
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 23/96 (23%)
Query: 12 IEVSGLRNVSVKLRQSLRLVCRCKGNPLPA-----VSWFKD-------------NVEITT 53
+ V V L S+ L C + + ++W + +
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 54 NKRLKIQFKKKRS-----TLIITRIRSEDAGRYECR 84
+KRL+ + + +L + +R ED G Y C
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCL 97
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 39.3 bits (92), Expect = 8e-05
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 112 CPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
P S C G+C D +G C C G++G+ C+
Sbjct: 16 HPCASLCCGHGTCI--DGIGSFSCDCRSGWEGRFCQ 49
Score = 33.9 bits (78), Expect = 0.008
Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C + VG C CA GYK
Sbjct: 62 GGCTHYCL--EEVGWRRCSCAPGYKLGDDL 89
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 40.2 bits (93), Expect = 1e-04
Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCK---GNPLPAVSWFKDNVEITTNKRLKIQFKKK-- 64
EVS + + S + + C GNP P ++W+++ + + +
Sbjct: 117 EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSR 176
Query: 65 -----------RSTLIITRIRSEDAGRYECR-----GTGVHKDVVSAFAEVSIN 102
STL + + + + C G H + S ++++
Sbjct: 177 TVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230
Score = 38.6 bits (89), Expect = 4e-04
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 23/116 (19%)
Query: 12 IEVSGLRNVSVKLRQSLRLVCRCKGNP-LPAVSWFKDNVEITTNKRLKIQFKKKRS---- 66
+ +S V V +S+ L C G + WF + RL +
Sbjct: 2 VRLSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRS-GARPRLASAEMQGSELQVT 60
Query: 67 -----------------TLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRP 105
L++ + D Y C A A +++ +P
Sbjct: 61 MHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKP 116
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 38.6 bits (89), Expect = 1e-04
Identities = 10/63 (15%), Positives = 21/63 (33%)
Query: 34 CKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVHKDVV 93
C P + W ++ I ++ K + + E +G Y C G +
Sbjct: 28 CPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 87
Query: 94 SAF 96
+ +
Sbjct: 88 NFY 90
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 39.9 bits (92), Expect = 2e-04
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 28/116 (24%)
Query: 6 RATIHPIEVSGLRNVSVKLRQSLRLVCRCK---GNPLPAVSWFKDNVEITTNK------- 55
R+ P + V + +S+ + C + + V W + ++
Sbjct: 1 RSQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60
Query: 56 -------------RLKIQFKKKRSTLIITRIRSEDAGRYECR-----GTGVHKDVV 93
L +L++ ++ D G Y C + V K V
Sbjct: 61 NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPV 116
Score = 34.8 bits (79), Expect = 0.007
Identities = 13/110 (11%), Positives = 32/110 (29%), Gaps = 28/110 (25%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLP---AVSWFKDNVEITTNKR------------------ 56
R++ V++ + ++ C + V+W + T +
Sbjct: 126 RDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGR 185
Query: 57 ------LKIQFKKKRSTLIITRIRSEDAGRYECR-GTGVHKDVVSAFAEV 99
L + ++ + ++ D G Y C G + + V
Sbjct: 186 FRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 39.7 bits (92), Expect = 2e-04
Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 8/129 (6%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAG 79
++V ++ + + +K+ I + R ++ + + + +DAG
Sbjct: 109 MTVDKGDNVNISFKKVLIKEEDAVIYKNGSFIHSVPRHEVP---DILEVHLPHAQPQDAG 165
Query: 80 RYECRGTGVHKDVVSAFAEVSINLRPDNMGGPC-PLDSYCLNGGSCTYYDTVGELVCQCA 138
Y R G + + + G C L + C+N G C + GE C C
Sbjct: 166 VYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCH--EDTGE--CICP 221
Query: 139 EGYKGQRCE 147
G+ G+ CE
Sbjct: 222 PGFMGRTCE 230
Score = 37.8 bits (87), Expect = 0.001
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 109 GGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVYNRSSMY 158
G C L C NG C + C C+ G++G +CE + + +
Sbjct: 286 GPDCKLRCSCNNGEMCDRFQG-----CLCSPGWQGLQCEREGIPRMTPKI 330
Score = 31.6 bits (71), Expect = 0.11
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 110 GPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C C + C C CA G+KG +C
Sbjct: 244 ERCSGQEGCKSYVFCLPDP--YG--CSCATGWKGLQCN 277
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 39.1 bits (90), Expect = 2e-04
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 6 RATIHPIEVSG-LRNVSVKLRQSLRLVCRCKG-NPLPAVSWFKDNVEITTNKRLKIQFKK 63
+ P++V V+V L S +L CR + +V W + + +Q
Sbjct: 2 SLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG-----AVQSDT 56
Query: 64 KRSTLIITRIRSEDAGRYECRGT 86
RS L + AG C G+
Sbjct: 57 GRSVLTVRNASLSAAGTRVCVGS 79
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 38.3 bits (89), Expect = 3e-04
Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 14/86 (16%)
Query: 13 EVSGLRNVSVKLRQSLRLVCRC------------KGNPLPAVSWFKDNVEITTNKRLK-- 58
+ + NV+ ++ L + +F + + K
Sbjct: 2 QDQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDR 61
Query: 59 IQFKKKRSTLIITRIRSEDAGRYECR 84
+ K L I + ED G Y R
Sbjct: 62 VDLDKTNGALRIYNVSKEDRGDYYMR 87
Score = 35.2 bits (81), Expect = 0.004
Identities = 3/59 (5%), Positives = 15/59 (25%), Gaps = 11/59 (18%)
Query: 26 QSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
+ L C + ++ + + ++ + ++C+
Sbjct: 116 SNATLTCEVLEGTDVELKLYQGKEHLRSL-----------RQKTMSYQWTNLRAPFKCK 163
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 38.5 bits (90), Expect = 3e-04
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 111 PCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C CLNGG+C+ + C C EGY G CE
Sbjct: 133 YCGTHQPCLNGGTCSNTG-PDKYQCSCPEGYSGPNCE 168
Score = 32.7 bits (75), Expect = 0.028
Identities = 6/33 (18%), Positives = 9/33 (27%), Gaps = 5/33 (15%)
Query: 115 DSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
+ + GS C + Y G C
Sbjct: 4 SHHHHHHGSIEGRSA-----VTCDDYYYGFGCN 31
Score = 31.6 bits (72), Expect = 0.070
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 5/30 (16%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
GSC C+C G++G C+
Sbjct: 73 SPKHGSCKLPGD-----CRCQYGWQGLYCD 97
Score = 30.4 bits (69), Expect = 0.19
Identities = 7/30 (23%), Positives = 9/30 (30%), Gaps = 5/30 (16%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
G C C C + GQ C+
Sbjct: 104 GCVHGIC-----NEPWQCLCETNWGGQLCD 128
Score = 28.9 bits (65), Expect = 0.57
Identities = 8/30 (26%), Positives = 9/30 (30%), Gaps = 4/30 (13%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
G D G C EG+ G C
Sbjct: 39 DFFGHYAC--DQNGN--KTCMEGWMGPECN 64
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 37.8 bits (87), Expect = 9e-04
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 21/116 (18%)
Query: 35 KGNPLPAVSWFKDNVEITTNKR---------LKIQFKKKRSTLIITRIRSEDAGRYECRG 85
+ V+ + D E+ + L+ ++ L I + + D+G+Y C
Sbjct: 43 SSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCY- 101
Query: 86 TGVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGY 141
+ + + L+ +G +D G L C+ Y
Sbjct: 102 --FQDG--DFYEKALVELKVAALGSDLHVDVKGYKDGGIH-------LECRSTGWY 146
Score = 30.1 bits (67), Expect = 0.31
Identities = 10/63 (15%), Positives = 15/63 (23%), Gaps = 5/63 (7%)
Query: 26 QSLRLVCRCKGN-PLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIIT---RIRSEDAGRY 81
+ L CR G P P + W + E + +R
Sbjct: 134 GGIHLECRSTGWYPQPQIQWSNNKGENIPTVE-APVVADGVGLYAVAASVIMRGSSGEGV 192
Query: 82 ECR 84
C
Sbjct: 193 SCT 195
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 37.8 bits (86), Expect = 0.001
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 5/100 (5%)
Query: 7 ATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRS 66
+ R K + L C K N L V W N + R
Sbjct: 530 SVCPDKSKGSYRQHFFKHGGTAELKCSQKSN-LARVFWKFQNGVLKAESP--KYGLMGRK 586
Query: 67 TLIITRIRSEDAGRYECRGT--GVHKDVVSAFAEVSINLR 104
L+I + D+G Y+C +K V A+ + ++
Sbjct: 587 NLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVK 626
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 37.2 bits (85), Expect = 0.001
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 111 PCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCES 148
C NGG C +C+C +G+ G CE
Sbjct: 148 QAECPGGCRNGGFC-----NERRICECPDGFHGPHCEG 180
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1;
signal regulatory protein alpha, immunoglobulin
superfamily, phosphoprotein; HET: NAG; 2.49A {Homo
sapiens}
Length = 327
Score = 37.6 bits (87), Expect = 0.001
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 15/79 (18%)
Query: 20 VSVKLRQSLRLVCRCKGN-PLPAVSWFKDNVEITT----------NKRLKIQFKKKRS-- 66
VSV +S L C P+ + WF+ + + KR
Sbjct: 13 VSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENM 72
Query: 67 --TLIITRIRSEDAGRYEC 83
++ I+ I DAG Y C
Sbjct: 73 DFSISISNITPADAGTYYC 91
Score = 31.1 bits (70), Expect = 0.15
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 26 QSLRLVCRCKG-NPLPA-VSWFKDNVEITTNKRLKIQFKKK-----RSTLIITRIRSEDA 78
++ C G +P + WFK+ E++ + + ST + R +
Sbjct: 133 HTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVH 192
Query: 79 GRYECR 84
+ C
Sbjct: 193 SQVICE 198
Score = 28.7 bits (64), Expect = 0.98
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 21 SVKLRQSLRLVCRCKG-NPLPA-VSWFKDNVEITTNKRLKIQFKKK-----RSTLIITRI 73
V+ + + C+ + P ++W ++ T + K S L++
Sbjct: 231 PVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVS 290
Query: 74 RSEDAGRYECR 84
D + C+
Sbjct: 291 AHRDDVKLTCQ 301
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 36.0 bits (83), Expect = 0.001
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 17/95 (17%)
Query: 2 SKGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFK----------DNVEI 51
S G H + ++ + +V L S L ++WF
Sbjct: 2 SSGSSGQGHLVHMTVVSGSNVTLNISESL-----PENYKQLTWFYTFDQKIVEWDSRKSK 56
Query: 52 TTNKRLK--IQFKKKRSTLIITRIRSEDAGRYECR 84
+ K ++ + L I++++ ED Y R
Sbjct: 57 YFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMR 91
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 37.1 bits (86), Expect = 0.002
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C NGG C +G+ C+C++GY+G C
Sbjct: 251 CRNGGKC-----IGKSKCKCSKGYQGDLCS 275
Score = 35.6 bits (82), Expect = 0.004
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVYN 153
C NGG+C Y C C G +G++CE
Sbjct: 219 CFNGGTCFYPGK-----CICPPGLEGEQCEISKCPQ 249
Score = 34.8 bits (80), Expect = 0.008
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVYN 153
C NGG C C+C +G+ G CE
Sbjct: 155 CRNGGFCNERRI-----CECPDGFHGPHCEKALCTP 185
Score = 34.4 bits (79), Expect = 0.013
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C+NGG C C C G+ G C+
Sbjct: 187 CMNGGLCVTPGF-----CICPPGFYGVNCD 211
Score = 34.1 bits (78), Expect = 0.017
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 115 DSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESK 149
+ C G+C + CQC EG+ G+ C +
Sbjct: 280 EPGCGAHGTCHEPNK-----CQCQEGWHGRHCNKR 309
Score = 30.2 bits (68), Expect = 0.27
Identities = 2/39 (5%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 109 GGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
G + ++ ++ ++ + C+
Sbjct: 111 GKQDGVAAFEVDVIVMN--SEGNTILKTPQNAIFFKTCQ 147
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 36.4 bits (84), Expect = 0.002
Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 4/84 (4%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
+S R + + +++ L C P S K+ + Q + +
Sbjct: 105 GKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEG----ELSLPQHQSGEHPANFS 160
Query: 70 ITRIRSEDAGRYECRGTGVHKDVV 93
+ + +G Y C G +
Sbjct: 161 LGPVDLNVSGIYRCYGWYNRSPYL 184
Score = 34.1 bits (78), Expect = 0.013
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 33 RCKGNPLPAVSWF--KDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRG 85
+C+ ++ N R + + +I + + AGRY+C+
Sbjct: 29 QCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQY 83
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 36.1 bits (83), Expect = 0.002
Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 11/79 (13%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNK----------RLKIQFKKKRSTL 68
+ + ++ PL V W K ++ + + ++ +L
Sbjct: 4 QIYGVVYGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62
Query: 69 IITRIRSEDAGRYECRGTG 87
I + S D YE
Sbjct: 63 TIYNLTSSDEDEYEMESPN 81
Score = 29.5 bits (66), Expect = 0.42
Identities = 3/58 (5%), Positives = 14/58 (24%), Gaps = 11/58 (18%)
Query: 26 QSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYEC 83
+ L C + ++ + + ++ + ++C
Sbjct: 106 SNATLTCEVLEGTDVELKLYQGKEHLRSL-----------RQKTMSYQWTNLRAPFKC 152
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 36.5 bits (83), Expect = 0.003
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
+ VS+ L C + + SW + + + L I + ++
Sbjct: 508 QKVSLAPNSRYYLSCPME-SRHATYSWRHKENVEQSCEP---GHQSPNCILFIENLTAQQ 563
Query: 78 AGRYEC 83
G Y C
Sbjct: 564 YGHYFC 569
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 36.0 bits (82), Expect = 0.003
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 10/60 (16%)
Query: 27 SLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGT 86
S+ L C + W KD I+ ++T + + G Y+C+G
Sbjct: 124 SVLLTCGLTDKT---IKWLKDGSIISP-------LNATKNTWNLGNNAKDPRGTYQCQGA 173
Score = 32.2 bits (72), Expect = 0.050
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 33 RCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVHK 90
C + + W K+ E+ + ++ ED+G Y C +K
Sbjct: 20 TCPLDSDENLKWEKNGQELPQKHD--------KHLVLQDFSEVEDSGYYVCYTPASNK 69
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune
system; 1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 34.8 bits (80), Expect = 0.003
Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCRCK------GNPLPAVSWFKDNVEITTNKRLK 58
+RA +++ +V L+ + + + + ++ + K
Sbjct: 4 IRARGSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFK 63
Query: 59 --IQFKKKRSTLIITRIRSEDAGRYECR 84
+ ++ L I+ +R ED G Y R
Sbjct: 64 GRVYLEENNGALHISNVRKEDKGTYYMR 91
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 34.7 bits (80), Expect = 0.003
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 18 RNVSVKLRQSLRLVCRCKG--NPLPAVSWFK------DNVEITTNKRLKIQFKK--KRST 67
R+V+ + +SL + C + L + W++ + I+ R K +
Sbjct: 8 RSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFS 67
Query: 68 LIITRIRSEDAGRYEC 83
L I + ED G Y C
Sbjct: 68 LRINDLTVEDGGTYRC 83
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 34.9 bits (80), Expect = 0.004
Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 18/83 (21%)
Query: 20 VSVKLRQSLRLVCR----CKGNPLPAVSWFKDNV--------------EITTNKRLKIQF 61
+ S L C + +V+WF+D V
Sbjct: 17 IRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFL 76
Query: 62 KKKRSTLIITRIRSEDAGRYECR 84
++ L I +R DA Y CR
Sbjct: 77 HDHQAELHIRDVRGHDASIYVCR 99
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 34.5 bits (79), Expect = 0.005
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 17/89 (19%)
Query: 13 EVSGLRNVSVKLRQSLRLVCR------------CKGNPLPAVSWF---KDNVEITTNKRL 57
+++G V+ R SL + C C+G + + R+
Sbjct: 5 QITGPTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRV 64
Query: 58 KIQFKKKRS--TLIITRIRSEDAGRYECR 84
I+ +K T+ + + DA Y C
Sbjct: 65 SIKDNQKNRTFTVTMEDLMKTDADTYWCG 93
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region;
superagonist peptide T-cell vaccines, transmembrane,
immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D
2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D*
3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 35.0 bits (80), Expect = 0.006
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 16/80 (20%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFK--------------DNVEITTNKRLKIQFKK-- 63
+SV ++L L C + + + WF+ + T+ RL K
Sbjct: 10 LSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSS 69
Query: 64 KRSTLIITRIRSEDAGRYEC 83
RSTL I + D+ Y C
Sbjct: 70 GRSTLYIAASQPGDSATYLC 89
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 34.1 bits (78), Expect = 0.006
Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 15 SGLRNVSVKLRQSLRLVCR------------CKGNPLPAVSW--FKDNVEITTNKRLKIQ 60
S R V+ + SL + C C+ + N R+ I+
Sbjct: 1 SKARTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIR 60
Query: 61 FKKKRS--TLIITRIRSEDAGRYECR-GTGVHKDVVSAFAEVSINLRP 105
T+ + + EDAG Y C T +D EV +++ P
Sbjct: 61 DSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVFP 108
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 35.2 bits (80), Expect = 0.006
Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 9/98 (9%)
Query: 6 RATIHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKR 65
I R S L C+ P SW + + + +
Sbjct: 123 LIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRS------ 176
Query: 66 STLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINL 103
S L +T + C+ + + E ++ L
Sbjct: 177 SELTLTPRPEDHGTNLTCQ---MKRQGAQVTTERTVQL 211
Score = 27.5 bits (60), Expect = 2.0
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 26/93 (27%)
Query: 18 RNVSVKLRQSLRLVCR-------CKGNPLPAVSWFKDNVE------ITTNKRLKIQFKKK 64
++V+V+ + + C +P V WF+D + TN + +
Sbjct: 8 KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67
Query: 65 RS-------------TLIITRIRSEDAGRYECR 84
+ +L I R ED G Y R
Sbjct: 68 QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFR 100
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 34.9 bits (80), Expect = 0.007
Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 20 VSVKLRQSLRLVCRCKG----NPLPAVSWFKDNVEITTNKRLKIQFKKK-----RSTLII 70
++ + ++ + C +P +W+ D VE+ K + + S L +
Sbjct: 13 DTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTV 72
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGP 111
+ Y+C+ + +K + + E +I+ P
Sbjct: 73 LHQDWLNGKEYKCKVS--NKALPA-PIEKTISKAKGQPREP 110
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 34.6 bits (79), Expect = 0.008
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 11/79 (13%)
Query: 7 ATIHPIEVSGLRNVSVKLRQSLRLVCRCK-GNPLPAVSWFKDNVEITTNKRLKIQFKKKR 65
+ I+V+ + + L L C + + + W +++ L
Sbjct: 106 RQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNL-------- 157
Query: 66 STLIITRIRSEDAGRYECR 84
+ R Y C
Sbjct: 158 --TVSWDPRISSEQDYTCI 174
Score = 34.2 bits (78), Expect = 0.011
Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 22/105 (20%)
Query: 8 TIHPIEVSGLRNVSVKLRQSLRLVCRCK-GNPLPAVSWFKDNVEITT-------NKRLKI 59
++ P+ V+G+ SV L G + ++W + + + + +
Sbjct: 2 SLTPLMVNGILGESVTLP------LEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHV 55
Query: 60 QFKKKRS--------TLIITRIRSEDAGRYECRGTGVHKDVVSAF 96
K+ +L ++ ++ ED G Y + + +S++
Sbjct: 56 TNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSY 100
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 34.8 bits (80), Expect = 0.008
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 33 RCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
C+G K+ R K ++ I + + AGRY C
Sbjct: 25 WCQGTLEAREYRLDKEE-SPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCY 76
Score = 29.8 bits (67), Expect = 0.31
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNV-EITTNKRLKIQFKKKRSTL 68
+S L + V +S+ L+C+ + +P+ K+ R + ++ ++
Sbjct: 99 SKPTLSALPSPLVTSGKSVTLLCQSR-SPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEF 157
Query: 69 IITRIRSEDAGRYECRG 85
++ + S G Y C
Sbjct: 158 PMSPVTSVHGGTYRCFS 174
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 35.1 bits (80), Expect = 0.008
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 6/42 (14%)
Query: 106 DNMGGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
D+ C G C+ C C + G C
Sbjct: 524 DDFSCVRYKGEMCSGHGQCSCG------DCLCDSDWTGYYCN 559
Score = 29.7 bits (66), Expect = 0.48
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 109 GGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
P C NG VC+C G+ G +CE
Sbjct: 439 AQAEPNSHRCNNGNGTFECG-----VCRCGPGWLGSQCE 472
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 34.4 bits (79), Expect = 0.008
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 33 RCKGNPLPA--VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRG 85
C+G A + ++ + K I + S AG+Y C
Sbjct: 24 CCQG-NYGAVEYQLHFEGSLFAVDRPKPPERINKVK-FYIPDMNSRMAGQYSCIY 76
Score = 29.8 bits (67), Expect = 0.29
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
+S V + + CR K+ + ++ + K ++
Sbjct: 98 DTPTLSVHPGPEVISGEKVTFYCRLDTAT-SMFLLLKEG----RSSHVQRGYGKVQAEFP 152
Query: 70 ITRIRSEDAGRYECRGT 86
+ + + G Y C G+
Sbjct: 153 LGPVTTAHRGTYRCFGS 169
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 33.7 bits (77), Expect = 0.008
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 19/90 (21%)
Query: 14 VSGLRNVSVKLRQSLRLVCR--------------CKGNPLPAVSWF---KDNVEITTNKR 56
+ G V+ S+ + C C+ + V R
Sbjct: 4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 63
Query: 57 LKIQFKKKRS--TLIITRIRSEDAGRYECR 84
+ + + I ++ +D+GRY+C
Sbjct: 64 ANLTNFPENGTFVVNIAQLSQDDSGRYKCG 93
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 34.5 bits (79), Expect = 0.010
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 33 RCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRG 85
C+GN + ++ + K I + S AG+Y C
Sbjct: 27 CCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVK-FYIPDMNSRMAGQYSCIY 79
Score = 30.6 bits (69), Expect = 0.19
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
+S V + + CR K+ + ++ + K ++
Sbjct: 101 DTPTLSVHPGPEVISGEKVTFYCRLDT-ATSMFLLLKEG----RSSHVQRGYGKVQAEFP 155
Query: 70 ITRIRSEDAGRYECRGT 86
+ + + G Y C G+
Sbjct: 156 LGPVTTAHRGTYRCFGS 172
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human
cytomegalovirus, PP65, T cell receptor (TCR), immune
response, public response; 2.80A {Homo sapiens}
Length = 199
Score = 34.5 bits (79), Expect = 0.010
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 16/80 (20%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFK--------------DNVEITTNKRLKIQFKKKR 65
+ V+ S C + A+ W++ N + R+ K
Sbjct: 10 LHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKE 69
Query: 66 --STLIITRIRSEDAGRYEC 83
S L I + ED+ Y C
Sbjct: 70 GYSYLYIKGSQPEDSATYLC 89
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 35.1 bits (80), Expect = 0.010
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 8/46 (17%)
Query: 111 PCPLDSY---CLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVYN 153
CP + G +C D+ C Y ++ + D Y
Sbjct: 624 ACPGLQLSNNPVKGRTCKERDS-----EGCWVAYTLEQQDGMDRYL 664
Score = 33.1 bits (75), Expect = 0.034
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 6/46 (13%)
Query: 102 NLRPDNMGGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
G P C G C VC+C GY+ C+
Sbjct: 552 QCERTTEGCLNPRRVECSGRGRCRCN------VCECHSGYQLPLCQ 591
Score = 32.4 bits (73), Expect = 0.062
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 106 DNMGGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
D + C G + G+ C+C G++G C+
Sbjct: 515 DTINCERYNGQVCGGPGRGLCFC--GK--CRCHPGFEGSACQ 552
Score = 31.2 bits (70), Expect = 0.15
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 111 PCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCES 148
C + C + +C+C GY G+ CE
Sbjct: 424 ECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCEC 461
Score = 28.1 bits (62), Expect = 1.7
Identities = 7/33 (21%), Positives = 10/33 (30%), Gaps = 7/33 (21%)
Query: 115 DSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
S C SC + +G G+ C
Sbjct: 597 PSPCGKYISCAE-------CLKFEKGPFGKNCS 622
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 34.8 bits (79), Expect = 0.010
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 73 IRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCTYYDTVGE 132
IR + + S P G CLNGG C+ +
Sbjct: 154 IRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEG-EGGVCLNGGVCS--VVDDQ 210
Query: 133 LVCQCAE-GYKGQRCESKDVYNRSSM 157
VC C+ G++G+ C ++
Sbjct: 211 AVCDCSRTGFRGKDCSQGKEEYIATF 236
Score = 27.5 bits (60), Expect = 3.2
Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 3/50 (6%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAE-GYKGQRCESKDVYNRSSMYKPYFSW 164
C N G C C C+ + G C S ++
Sbjct: 1023 DSCSNQGVCL--QQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITY 1070
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 34.4 bits (79), Expect = 0.010
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 17/83 (20%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFK------------DNVEITTNKRLKIQFKKKR 65
+ + L L C +G P + W++ + + R
Sbjct: 9 ATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASR 68
Query: 66 S-----TLIITRIRSEDAGRYEC 83
L ++ D+G Y C
Sbjct: 69 PQDRQFILSSKKLLLSDSGFYLC 91
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 34.1 bits (78), Expect = 0.014
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 2 SKGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKG----NPLPAVSWFKDNVEITTNKRL 57
S+ I P + + + + ++ C +P SWF D+VE+ T +
Sbjct: 13 SEVSSVFIFPPKTKDV----LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTH 68
Query: 58 KIQFKKK-----RSTLIITRIRSEDAGRYECR 84
+ + S L I + ++C+
Sbjct: 69 APEKQSNSTLRSVSELPIVERDWLNGKTFKCK 100
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1;
immunoglobulin-like folds, immune system; 1.80A {Homo
sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A
1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 34.0 bits (78), Expect = 0.014
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 33 RCKGNPLPA--VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
RC+G +++ R+ + KK I I E GRY C
Sbjct: 25 RCQG-GQETQEYRLYREKKTAPWITRIPQELVKK-GQFPIPSITWEHTGRYRCY 76
Score = 26.7 bits (59), Expect = 4.0
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 5/67 (7%)
Query: 22 VKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFK---KKRSTLIITRIRSEDA 78
V ++ L C + K+ E + L Q R+ + +
Sbjct: 112 VNSGGNVTLQCDSQVAF-DGFILCKEG-EDEHPQCLNSQPHARGSSRAIFSVGPVSPSRR 169
Query: 79 GRYECRG 85
Y C
Sbjct: 170 WWYRCYA 176
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 34.2 bits (78), Expect = 0.015
Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 20 VSVKLRQSLRLVCRCKG----NPLPAVSWFKDNVEITTNKRLKIQFKKK-----RSTLII 70
++ + ++ + C +P +W+ D VE+ K + + S L +
Sbjct: 34 DTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTV 93
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGP 111
+ Y+C+ V + A E +I+ P
Sbjct: 94 LHQDWLNGKEYKCK---VSNKALPAPIEKTISKAKGQPREP 131
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 33.4 bits (76), Expect = 0.017
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 35 KGNPLPAVSWFKDNVEITTNK---------RLKIQFKKKRSTLIITRIRSEDAGRYECR 84
+ V +++ + + LK + + L I +R D G Y C
Sbjct: 45 RSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCF 103
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D
3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 33.8 bits (77), Expect = 0.017
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 15/79 (18%)
Query: 20 VSVKLRQSLRLVCRCKG-NPLPAVSWFK--------------DNVEITTNKRLKIQFKKK 64
+ + + L C + + W++ + L I +K
Sbjct: 9 MESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRK 68
Query: 65 RSTLIITRIRSEDAGRYEC 83
STLI+ R DA Y C
Sbjct: 69 SSTLILHRATLRDAAVYYC 87
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor
system; 2.75A {Mus musculus}
Length = 256
Score = 33.9 bits (78), Expect = 0.018
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 17/83 (20%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFK---------------DNVEITTNKRLKIQFK 62
V+V SL+L C+ + P + W+ + + + +F
Sbjct: 11 ARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFS 70
Query: 63 KKRST--LIITRIRSEDAGRYEC 83
K S+ L + D+ Y C
Sbjct: 71 KSDSSFHLRKASVHRSDSAVYFC 93
Score = 25.8 bits (57), Expect = 7.4
Identities = 10/84 (11%), Positives = 20/84 (23%), Gaps = 19/84 (22%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFK-----------------DNVEITTNKRLKIQ 60
RN +++ L CR + + W++ + K
Sbjct: 145 RNKVTVTGENVTLSCRQTNSH-NYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKAT 203
Query: 61 FKKKRS-TLIITRIRSEDAGRYEC 83
+ L + Y C
Sbjct: 204 RTTQEDFFLTLESASPSQTSLYFC 227
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 33.5 bits (76), Expect = 0.020
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 16/82 (19%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFK--------------DNVEITTNKRLKIQFKK 63
+++ + ++ L C +P + W+K + +N R
Sbjct: 11 QSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDA 70
Query: 64 KR--STLIITRIRSEDAGRYEC 83
S+L IT + D+ Y C
Sbjct: 71 DTKQSSLHITASQLSDSASYIC 92
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 33.5 bits (76), Expect = 0.021
Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 16/80 (20%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFK--------------DNVEITTNKRLKIQFKK-- 63
+ V+ ++ L C P + W+K D + T+N R K
Sbjct: 11 LVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDA 70
Query: 64 KRSTLIITRIRSEDAGRYEC 83
K STL IT +D Y C
Sbjct: 71 KHSTLHITATLLDDTATYFC 90
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 32.6 bits (74), Expect = 0.022
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 18/89 (20%)
Query: 14 VSGLRNVSVKLRQSLRLVCR-------------CKGNPLPAVSWF---KDNVEITTNKRL 57
S + + Q+L + C+ CK + R
Sbjct: 14 QSKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRF 73
Query: 58 KIQFKKKRS--TLIITRIRSEDAGRYECR 84
I T+ +T +R ED+G Y CR
Sbjct: 74 TIWDDPDAGFFTVTMTDLREEDSGHYWCR 102
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 32.9 bits (74), Expect = 0.023
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 65 RSTLIITRIRSEDAGRYECR 84
TL +T + +D GRY C+
Sbjct: 91 APTLRLTHVHPQDGGRYWCQ 110
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 32.6 bits (74), Expect = 0.024
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 11 PIEVSGLRNVSVKLR------QSLRLVCRCKGNPLPAVSWFK----DNVEITTNK----R 56
+EV G+ V L + + C +G + + +T K
Sbjct: 4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYN 63
Query: 57 LKIQFKKKRSTLIITRIRSEDAGRYECR 84
LK + +L I D+G Y CR
Sbjct: 64 LKGHISEGDVSLTIENSVESDSGLYCCR 91
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 33.0 bits (75), Expect = 0.026
Identities = 8/79 (10%), Positives = 27/79 (34%), Gaps = 15/79 (18%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFK-------------DNVEITTNKRLKIQFKKKR- 65
++ +++ C + + + W++ + R + +
Sbjct: 9 MTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKG 68
Query: 66 -STLIITRIRSEDAGRYEC 83
S L++ ++ +D+ Y C
Sbjct: 69 YSYLLLKELQMKDSASYLC 87
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm,
mouse IGG, zinc-finger, DNA-binding, RNA-binding,
tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC;
1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 32.9 bits (75), Expect = 0.028
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 22 VKLRQSLRLVCRCKG----NPLPAVSWFKDNVEITT--NKRLKIQFKKK---RSTLIITR 72
+ + + ++ C +P SWF D+VE+ T K + QF S L I
Sbjct: 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMH 74
Query: 73 IRSEDAGRYECRGTGVHKDVVS 94
+ ++CR +
Sbjct: 75 QDWLNGKEFKCRVN--SAAFPA 94
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 32.5 bits (74), Expect = 0.030
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 118 CLNGGSCTYYDTVGELVC-QCAEGYKGQRCE 147
C G SC E+VC C G G+RCE
Sbjct: 3 CPGGSSCAIVPKTKEVVCTHCPTGTAGKRCE 33
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 32.7 bits (74), Expect = 0.032
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 25/91 (27%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWF--KDNVEITTNKRL------------------ 57
+ + +L Q + LVC G+ SW + ++ +
Sbjct: 17 KKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNS 76
Query: 58 -KIQFKKKRS----TLIITRIRSEDAGRYEC 83
K+ + + L + + E+ G Y C
Sbjct: 77 SKLFSAMRDTNNKYVLTLNKFSKENEGYYFC 107
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 33.1 bits (75), Expect = 0.033
Identities = 10/84 (11%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 21 SVKLRQSLRLVCRCKGNPLPA---VSWFKDNVEITTNKRLKIQFKKK-----RSTLIITR 72
+ + +L C P + V+W ++ + +Q S + ++
Sbjct: 24 ELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVST 83
Query: 73 IRSEDAGRYECRGTGVHKDVVSAF 96
R+ C H+++
Sbjct: 84 QDWLSGERFTCTVQ--HEELPLPL 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.034
Identities = 32/272 (11%), Positives = 67/272 (24%), Gaps = 130/272 (47%)
Query: 12 IEVSGLRNVSVK---LRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRST- 67
++ R +++ L L +P S+F +L+ QF K
Sbjct: 1 MDAYSTRPLTLSHGSLEHVL---------LVPTASFF--IAS-----QLQEQFNKILPEP 44
Query: 68 ----------------------LIITRIRSEDAGRYEC--------------RGTGVH-- 89
+ + + G+++ G +H
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 90 ---------------KDVVSAF--AEVSINLRPDNMGGPCPLDS---------YCLNGG- 122
K+++ + A + RP + L + GG
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAK-RPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 123 --SCTY-------YDT----VGELVCQCAEGYKGQRCE--SKDVYNRSSMYKPYF---SW 164
+ Y Y T VG+L+ AE + + ++ W
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAE-----TLSELIRTTLDAEKVFTQGLNILEW 218
Query: 165 IK---------------------GTVQIFNYY 175
++ G +Q+ +Y
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like
receptor, structural genomics, PSI, protein structure
initiative; 2.10A {Mus musculus}
Length = 113
Score = 31.6 bits (72), Expect = 0.037
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 14 VSGLRNVSVKLRQSLRLVCR------------CKGNPLPAVSWF---KDNVEITTNKRLK 58
V+G VS + + SL + CR C+G P + + ++ R+
Sbjct: 5 VTGPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVS 64
Query: 59 IQFKKKRS--TLIITRIRSEDAGRYEC 83
I+ ++ T+ + +R DAG Y C
Sbjct: 65 IRDNQRDFIFTVTMEDLRMSDAGIYWC 91
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5
isoform 1; immunoglobulin-like fold, immune system;
1.85A {Homo sapiens}
Length = 196
Score = 32.5 bits (74), Expect = 0.039
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 33 RCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
RC+G K+ + + ++ K K + I + AGRY C
Sbjct: 25 RCQGTLEAQEYRLVKEGSPEPWDTQNPLEPKNK-ARFSIPSMTEHHAGRYRCY 76
Score = 27.9 bits (62), Expect = 1.5
Identities = 6/67 (8%), Positives = 17/67 (25%), Gaps = 3/67 (4%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEIT--TNKRLKIQFKKKRSTLIITRIRSEDA 78
V +++ L C + ++ T + ++ + +
Sbjct: 110 VVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHR 168
Query: 79 GRYECRG 85
C G
Sbjct: 169 WMLRCYG 175
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.039
Identities = 24/168 (14%), Positives = 46/168 (27%), Gaps = 43/168 (25%)
Query: 34 CKGNPLPAVSWFKDNV--EITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVHKD 91
NP +S +++ + T K K +T+I + + + E R
Sbjct: 323 LTTNPR-RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--AEYR------- 372
Query: 92 VVSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCTYYDTVGELVCQC------AEGYKGQR 145
F +S+ P + P L D V +V + + K
Sbjct: 373 --KMFDRLSV--FPPSA--HIPTILLSLIWFDVIKSD-VMVVVNKLHKYSLVEKQPKEST 425
Query: 146 CESKDVY--------NRSSM-------YKP---YFSWIKGTVQIFNYY 175
+Y N ++ Y + S + Y+
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 32.6 bits (74), Expect = 0.046
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 112 CPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKD 150
+ C +GG C + C C +GY G +CE D
Sbjct: 424 AKCEPACRHGGVCVRPNK-----CLCKKGYLGPQCEQVD 457
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 31.5 bits (71), Expect = 0.053
Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 22/116 (18%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCR---CKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRS 66
HP + +V+ + +++ C +G V W + + L+
Sbjct: 2 HPT-LKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQ 60
Query: 67 ------------------TLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLR 104
+L I ++ +D Y C T D + I LR
Sbjct: 61 QAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELR 116
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 32.2 bits (73), Expect = 0.055
Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 17/83 (20%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFK-------------DNVEITTNKRLKIQF--- 61
R V Q++ L C K + P +SW++ + K L
Sbjct: 9 RWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLA 68
Query: 62 -KKKRSTLIITRIRSEDAGRYEC 83
+ + L + C
Sbjct: 69 TRVTDTELRLQVANMSQGRTLYC 91
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 32.3 bits (73), Expect = 0.057
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 48 NVEITTNKRLKIQFKKKR--STLIITRIRSEDAGRYEC 83
N + RL++ + S+L+IT R+ D Y C
Sbjct: 52 NEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC 89
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2;
beta barrel, immunoglobulin fold, IGV domain, TIM,
immune system; 1.50A {Mus musculus}
Length = 115
Score = 31.5 bits (71), Expect = 0.059
Identities = 13/92 (14%), Positives = 23/92 (25%), Gaps = 21/92 (22%)
Query: 14 VSGLRNVSVKLRQSLRLVCR--CKGNPLPAVSWFK---------------DNVEITTNKR 56
+ V + L C + + W + +T +
Sbjct: 1 MESHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRN 60
Query: 57 LKIQFK----KKRSTLIITRIRSEDAGRYECR 84
+ Q K + +L I D G Y C
Sbjct: 61 SRYQLKGNISEGNVSLTIENTVVGDGGPYCCV 92
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, domain swapping, collagen
receptor, structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 31.2 bits (71), Expect = 0.060
Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 3/54 (5%)
Query: 33 RCKGNPLPAV--SWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
C + + + +T + K I + G Y C
Sbjct: 29 VCSY-SDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCI 81
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 32.2 bits (73), Expect = 0.061
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 22 VKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRST--LIITRIRSEDAG 79
VK +++ L +C + + RL + S I+R+ + AG
Sbjct: 19 VKSEETVIL--QCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAG 76
Query: 80 RYECRGTGVH 89
Y C G+ H
Sbjct: 77 TYRCYGSVTH 86
Score = 26.8 bits (59), Expect = 4.0
Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Query: 21 SVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGR 80
+V +++ L C + + ++ E + + G
Sbjct: 118 TVLAGENVTLSCSSRSSY-DMYHLSREG-EAHERRLPAGPKVNGTFQADFPLGPATHGGT 175
Query: 81 YECRG 85
Y C G
Sbjct: 176 YRCFG 180
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 32.5 bits (73), Expect = 0.064
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 116 SYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
+C NGG+C + C C Y G CE
Sbjct: 371 LHCQNGGTC-----HNNVRCLCPAAYTGILCE 397
Score = 31.0 bits (69), Expect = 0.17
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 107 NMGGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
+ G C C + YD +L C+C G C
Sbjct: 292 KVRGRCK----CNLHATVCVYDN-SKLTCECEHNTTGPDCG 327
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 32.2 bits (73), Expect = 0.065
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 22 VKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLK-IQFKKKRSTLIITRIRSEDAGR 80
VK + + L C K+ + ++ + I ++ I + AG
Sbjct: 130 VKSGERVILQCWSDIMF-EHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGT 188
Query: 81 YECRG 85
Y C G
Sbjct: 189 YRCYG 193
Score = 31.8 bits (72), Expect = 0.080
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 22 VKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRY 81
V + L C + +K++ I F+ + ++ + + AG Y
Sbjct: 35 VPRGGHVTLRCHYRH-RFNNFMLYKED-RIHIPIFHGRIFQ---ESFNMSPVTTAHAGNY 89
Query: 82 ECRGTGVH 89
CRG+ H
Sbjct: 90 TCRGSHPH 97
Score = 26.4 bits (58), Expect = 6.4
Identities = 9/77 (11%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
Query: 9 IHPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTL 68
+S V+ +S+ L C + + ++ + ++ +
Sbjct: 217 YEKPSLSAQPGPKVQAGESVTLSCSSRSSYDM-YHLSREGGA-HERRLPAVRKVNRTFQA 274
Query: 69 IITRIRSEDAGRYECRG 85
+ G Y C G
Sbjct: 275 DFPLGPATHGGTYRCFG 291
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 31.4 bits (71), Expect = 0.068
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 45 FKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR---GTGVHKDVVS 94
K V T+N K +++ +T ++ D G Y+C+ GV +
Sbjct: 73 LKGRVHFTSN-----DLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIH 120
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer
cell, HLA, major histocompatibility complex class I
(MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 257
Score = 31.9 bits (72), Expect = 0.069
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 22 VKLRQSLRLVCRCKGNPLPA-VSWFKDNVEITTNKRLKIQFKKKRS--TLIITRIRSEDA 78
VK +++ L +C + ++ + L + S I + + A
Sbjct: 18 VKSEETVIL--QCWSDVRFQHFLLHREG-KFKDTLHLIGEHHDGVSKANFSIGPMMQDLA 74
Query: 79 GRYECRGTGVH 89
G Y C G+ H
Sbjct: 75 GTYRCYGSVTH 85
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus}
SCOP: b.1.1.1 b.1.1.2
Length = 185
Score = 31.8 bits (72), Expect = 0.071
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 16/80 (20%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFK--------------DNVEITTNKRLKIQFKK-- 63
++V ++ L C + + W+ + R I F K
Sbjct: 10 LTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKRE 69
Query: 64 KRSTLIITRIRSEDAGRYEC 83
K+ +L I + D+ Y C
Sbjct: 70 KKFSLHIADSQPGDSATYFC 89
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody,
FAB, ternary complex, immune SY hydrolase; HET: PGE NAG
FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1
g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A*
1kdu_A
Length = 122
Score = 31.0 bits (69), Expect = 0.076
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 118 CLNGGSC-TYYDTVGELVCQCAEGYKGQRCESK 149
CLNGG+C + C C + + GQ CE
Sbjct: 3 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEID 35
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 31.0 bits (70), Expect = 0.077
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 21/90 (23%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSW-FKDNV-------------EITTNKR 56
V+G+ SV +++ + ++W K +V T++
Sbjct: 6 IFTVNGILGESVTFPVNIQE-----PRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRN 60
Query: 57 LK--IQFKKKRSTLIITRIRSEDAGRYECR 84
I L+I+ +R EDAG Y+
Sbjct: 61 YYERIHALGPNYNLVISDLRMEDAGDYKAD 90
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 31.0 bits (70), Expect = 0.081
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 19/87 (21%)
Query: 17 LRNVSVKLRQSLRLVCRCKGNPLPA-----VSWFKDN----VEITTNK----------RL 57
+ + ++ L C+ + + V W E+ K
Sbjct: 1 MLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMG 60
Query: 58 KIQFKKKRSTLIITRIRSEDAGRYECR 84
+ F TL + ++ +D G Y+C
Sbjct: 61 RTSFDSDSWTLRLHNLQIKDKGLYQCI 87
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 31.6 bits (71), Expect = 0.082
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 54 NKRLKIQFKKKR--STLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDN 107
N RLK F K STL I + ED+G Y C + + V + + P+
Sbjct: 58 NGRLKSAFDSKERYSTLHIRDAQLEDSGTYFCAAEASNTNKVVFGTGTRLQVLPNI 113
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 32.1 bits (73), Expect = 0.089
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 21 SVKLRQSLRLVCRCKG----NPLPAVSWFKDNVEITTNKRLKIQFKKK-----RSTLIIT 71
++ + ++ + C +P +W+ D V++ K + + S L +
Sbjct: 330 TLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVL 389
Query: 72 RIRSEDAGRYECR 84
D Y+C+
Sbjct: 390 HQNWLDGKEYKCK 402
Score = 28.3 bits (63), Expect = 1.4
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 14/78 (17%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFKDN--------VEITTNK------RLKIQFKKKR 65
S Q + + C + V+W++ + + R
Sbjct: 10 ASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTS 69
Query: 66 STLIITRIRSEDAGRYEC 83
++L I+ + +ED Y C
Sbjct: 70 ASLAISGLEAEDESDYYC 87
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 31.4 bits (71), Expect = 0.093
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 26 QSLRLVCRCKG-NPLPA---VSWFKDNVEITTNKRLKIQFKKK-----RSTLIITRIRSE 76
+ ++ C + +SWF +NVE+ T + + STL I
Sbjct: 27 LTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM 86
Query: 77 DAGRYECR 84
++C+
Sbjct: 87 SGKEFKCK 94
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 31.4 bits (71), Expect = 0.096
Identities = 8/78 (10%), Positives = 16/78 (20%), Gaps = 8/78 (10%)
Query: 20 VSVKLRQSLRLVCRCKGNPLP---AVSWFKDNVEITTNKRLKIQFKKK---RSTLIITRI 73
+ L L C G +W + + + S L
Sbjct: 14 EDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAE 73
Query: 74 RSEDAGRYECRGTGVHKD 91
+ C + +
Sbjct: 74 PWNHGKTFTCTAA--YPE 89
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 30.6 bits (69), Expect = 0.096
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 35 KGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
G+P F+ E+ N K L++ ++ ED+G Y R
Sbjct: 54 SGDPKLVDKRFRGRAELMGNMD------HKVCNLLLKDLKPEDSGTYNFR 97
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 31.8 bits (72), Expect = 0.097
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 28/90 (31%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFK--------------DNVEITTNKRLKIQFKK 63
V K S+++ CR + W++ + + T + +K
Sbjct: 32 SWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQ----GVEK 87
Query: 64 KR----------STLIITRIRSEDAGRYEC 83
+ STL +T ED+ Y C
Sbjct: 88 DKFLINHASLTLSTLTVTSAHPEDSSFYIC 117
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 30.7 bits (69), Expect = 0.11
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 35 KGNPLPAVSWFKDNVEITTNKRLKIQFKKKR---STLIITRIRSEDAGRYECR 84
G P+ + + + K+ Q + +TL + + ED G Y C
Sbjct: 59 MGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCE 111
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo
sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E
3mfg_B 2ij0_E
Length = 246
Score = 31.4 bits (71), Expect = 0.11
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 28/90 (31%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFK--------------DNVEITTNKRLKIQFKK 63
V K S+++ CR + W++ + + T + +K
Sbjct: 9 SWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQG----VEK 64
Query: 64 KR----------STLIITRIRSEDAGRYEC 83
+ STL +T ED+ Y C
Sbjct: 65 DKFLINHASLTLSTLTVTSAHPEDSSFYIC 94
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 31.2 bits (70), Expect = 0.12
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 23/87 (26%)
Query: 20 VSVKLRQSLRLVCRCKGNP-----LPAVSWF---------------KDNVEITTNKRLKI 59
L ++ + C + ++WF + + +
Sbjct: 13 QITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIV 72
Query: 60 QFKKKRS---TLIITRIRSEDAGRYEC 83
+ +S +L + I+ E+AG Y C
Sbjct: 73 SPWRLKSGDASLRLPGIQLEEAGEYRC 99
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 30.3 bits (68), Expect = 0.13
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 56 RLKIQFKKKRSTLIITRIRSEDAGRYECR 84
+LK K +LII + +D G Y CR
Sbjct: 62 QLKGDLNKGDVSLIIKNVTLDDHGTYCCR 90
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 31.3 bits (71), Expect = 0.13
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 16/82 (19%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFK--------------DNVEITTNKRLKIQF-- 61
++++V ++ L C + + W++ + + R I F
Sbjct: 135 QSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNK 194
Query: 62 KKKRSTLIITRIRSEDAGRYEC 83
++K+ +L I + D+ Y C
Sbjct: 195 REKKLSLHIADSQPGDSATYFC 216
Score = 28.6 bits (64), Expect = 0.90
Identities = 11/84 (13%), Positives = 21/84 (25%), Gaps = 19/84 (22%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFK-------------DNVEITTNKRLKIQF--- 61
RN + L C N + W++ T + +
Sbjct: 8 RNKVAVTGGKVTLSCNQTNN-HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKAS 66
Query: 62 --KKKRSTLIITRIRSEDAGRYEC 83
++ +LI+ Y C
Sbjct: 67 RPSQENFSLILELATPSQTSVYFC 90
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 31.2 bits (70), Expect = 0.13
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 26 QSLRLVCRCKG-NPLPA--VSWFKDNVEIT--TNKRLKIQFKKKRSTLIITRIRSEDAGR 80
++ L CR G P + ++ + E+ + + + T + R +
Sbjct: 105 ENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGAN 164
Query: 81 YECR 84
+ CR
Sbjct: 165 FSCR 168
Score = 28.1 bits (62), Expect = 1.4
Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 9/97 (9%)
Query: 11 PIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLII 70
++ R V+ SL L C T+ +R Q + +
Sbjct: 4 WADLQP-RVAFVERGGSLWLNCSTNCPRPERGGL------ETSLRRNGTQRGLRWLARQL 56
Query: 71 TRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDN 107
IR E + C + + A + RPD
Sbjct: 57 VDIR-EPETQPVCFFRCARR-TLQARGLIRTFQRPDR 91
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 31.2 bits (69), Expect = 0.13
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 9/55 (16%)
Query: 33 RCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTG 87
C ++W D + TL I DAG+Y C G
Sbjct: 27 TCDTPEEDGITWTLDQSS---------EVLGSGKTLTIQVKEFGDAGQYTCHKGG 72
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, extra celluar domain, domain
swappin nysgrc, structural genomics; 1.90A {Mus
musculus}
Length = 118
Score = 30.1 bits (68), Expect = 0.15
Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 3/54 (5%)
Query: 33 RCKGNPLPAV--SWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
C + + + +T + K I + G Y C
Sbjct: 29 VCSY-SDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCI 81
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin;
immune system/receptor, immune system/receptor/complex,
TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A
2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D
3qeq_D
Length = 215
Score = 30.7 bits (69), Expect = 0.16
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 48 NVEITTNKRLKIQFKKKR--STLIITRIRSEDAGRYEC 83
E+ KRL QF R S+L IT + D G Y C
Sbjct: 52 GGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLC 89
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 31.0 bits (70), Expect = 0.17
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 21 SVKLRQSLRLVCRCKG----NPLPAVSWFKDNVEITTNKRLKIQFKKK-----RSTLIIT 71
++ + + ++ C +P SWF DNVE+ T + + + S L I
Sbjct: 241 TLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIM 300
Query: 72 RIRSEDAGRYECRGTG 87
+ ++CR
Sbjct: 301 HQDWLNGKEFKCRVNS 316
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.18
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 8/30 (26%)
Query: 23 KLRQSLRLVCRCKGNP--LPAVSWFKDNVE 50
KL+ SL+L PA++ K +E
Sbjct: 24 KLQASLKLYA-----DDSAPALA-IKATME 47
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 29.7 bits (67), Expect = 0.22
Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 33 RCKGNPLPA--VSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECRGTGVHK 90
RC P A V + + ++ K Q + EDAG Y+CR
Sbjct: 25 RCHL-PRMAAWVQLWLNGTLRFDKEKDKEQDA---AEFSFAVTNLEDAGTYQCRYQVSEP 80
Query: 91 DVVSA 95
S
Sbjct: 81 LWTSN 85
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 30.4 bits (67), Expect = 0.28
Identities = 14/59 (23%), Positives = 16/59 (27%), Gaps = 6/59 (10%)
Query: 106 DNMGGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVYNRSSMYKPYFSW 164
D + P SYC G C VC C GY + S F
Sbjct: 186 DGVYISEPCPSYCSGHGDCISG------VCFCDLGYTAAQGTCVSNTPNHSEMFDRFEG 238
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 30.1 bits (67), Expect = 0.31
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 107 NMGGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
+GG C C S + +L+C C G CE
Sbjct: 250 AVGGRCK----CNGHASECVKNEFDKLMCNCKHNTYGVDCE 286
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 29.3 bits (66), Expect = 0.35
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 14/76 (18%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDN------VEITTNKRLKIQFKKKRS----T 67
R ++ K ++++ C +K R ++ ++ T
Sbjct: 26 RFIARKRGFTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGR----MEESQNESLAT 81
Query: 68 LIITRIRSEDAGRYEC 83
L I IR ED G Y C
Sbjct: 82 LTIQGIRFEDNGIYFC 97
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 29.8 bits (67), Expect = 0.37
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 20 VSVKLRQSLRLVCRCKGN-PLPAVSWFK--------------DNVEITTNKRLKIQFKKK 64
VS+ +R+++ L C + + + W+K + + + R + FKK
Sbjct: 146 VSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKA 205
Query: 65 RST--LIITRIRSEDAGRYEC 83
+ L I+ ++ ED+ +Y C
Sbjct: 206 AKSVALTISALQLEDSAKYFC 226
Score = 29.8 bits (67), Expect = 0.45
Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 21/85 (24%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFK-------------------DNVEITTNKRLKIQ 60
V + S + C + W+ +E +
Sbjct: 12 VIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDT 71
Query: 61 FKKKRST--LIITRIRSEDAGRYEC 83
+ R +I+ + D+G Y C
Sbjct: 72 YGSTRKNLRMILRNLIENDSGVYYC 96
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 29.4 bits (66), Expect = 0.38
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C G C +T+G C C G+ G CE
Sbjct: 127 CSKQGEC--LETIGNYTCSCYPGFYGPECE 154
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 29.0 bits (65), Expect = 0.39
Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 21/102 (20%)
Query: 20 VSVKLRQSLRLVCR-------------CKGNPLPAVSWFKDNVEITTNK------RLKIQ 60
+K Q+L + C + N R+ ++
Sbjct: 14 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILE 73
Query: 61 FKKKRS--TLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVS 100
+ + ++ ED+G Y+C K+ F +
Sbjct: 74 DYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIR 115
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 28.8 bits (64), Expect = 0.41
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 56 RLKIQFKKKRSTLIITRIRSEDAGRYECR 84
L + + +L I+ D+G Y CR
Sbjct: 63 TLLGKVQFGEVSLTISNTNRGDSGVYCCR 91
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 29.1 bits (65), Expect = 0.43
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 25/90 (27%)
Query: 19 NVSVKLRQSLRLVCRCKGNPLPAVSWF--KDNVEITTNKRL------------------- 57
+ +L Q + LVC G+ SW + ++ +
Sbjct: 13 KMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSS 72
Query: 58 KIQFKKKRS----TLIITRIRSEDAGRYEC 83
K+ + + L + + E+ G Y C
Sbjct: 73 KLFSAMRDTNNKYVLTLNKFSKENEGYYFC 102
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T
cell receptor delta, immune system; HET: NAG MAN FUC;
3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 29.2 bits (65), Expect = 0.51
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 16/79 (20%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFK------------DNVEITTNKRLKIQF---KKK 64
+S+ L C + +V WF+ N RLK F +++
Sbjct: 11 LSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERR 69
Query: 65 RSTLIITRIRSEDAGRYEC 83
STL I + ED+G Y C
Sbjct: 70 YSTLHIRDAQLEDSGTYFC 88
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 29.6 bits (66), Expect = 0.52
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 134 VCQCAEGYKGQRCESKDVYNRSSMY 158
C+C G++ CE K ++ +
Sbjct: 398 KCRCYPGWQAPWCERKSMWTGHHHH 422
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 29.0 bits (65), Expect = 0.52
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 115 DSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
++ C G C +T+ C+C G+ G +CE
Sbjct: 124 NTSCSGHGEC--VETINNYTCKCDPGFSGLKCE 154
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus}
PDB: 3kho_A*
Length = 133
Score = 28.8 bits (65), Expect = 0.55
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 16/76 (21%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWF-----KDNVE-ITTNKRLKIQFKKKRS----T 67
R + K ++ C N A++WF + E ++ R + ++ T
Sbjct: 25 RFAAKKRSSMVKF--HCYTNHSGALTWFRKRGSQQPQELVSEEGR----IVQTQNGSVYT 78
Query: 68 LIITRIRSEDAGRYEC 83
L I I+ ED G Y C
Sbjct: 79 LTIQNIQYEDNGIYFC 94
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 29.3 bits (65), Expect = 0.55
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 26 QSLRLVCRCKG-NPLPA--VSWFKDNVEITTNKRLKIQFKK--KRSTLIITRIRSEDAGR 80
+S + CR PL + + F+ N + K +T T R +
Sbjct: 104 KSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRN 163
Query: 81 YECR 84
+ C
Sbjct: 164 FSCL 167
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 29.6 bits (66), Expect = 0.56
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 4/56 (7%)
Query: 110 GPCPLDSYCLNGGSCTYYDTVGELVCQCAE-GYKGQRCESKDVYNRSSMYKPYFSW 164
C + C N G C C C+ + G C S ++
Sbjct: 186 TTC-QEDSCSNQGVCL--QQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITY 238
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N
2i26_N
Length = 121
Score = 28.5 bits (64), Expect = 0.61
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 18 RNVSVKLRQSLRLVCRCKG--NPLPAVSWF-----KDNVE-ITTNKRLKIQFKK--KRST 67
+ ++ + +SL + C + L W+ N E I+ R + K +
Sbjct: 8 QRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSKSFS 67
Query: 68 LIITRIRSEDAGRYEC 83
L I + +D+G Y C
Sbjct: 68 LRINDLTVKDSGTYRC 83
>1neu_A Myelin P0 protein; structural protein, glycoprotein,
transmembrane, phosphorylation, immunoglobulin fold,
signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 28.4 bits (63), Expect = 0.64
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 45 FKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
FK+ ++ + K +++I + D G + C
Sbjct: 66 FKERIQWVGDPS------WKDGSIVIHNLDYSDNGTFTCD 99
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II,
I immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 29.2 bits (65), Expect = 0.65
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 54 NKRLKIQFKKKR--STLIITRIRSEDAGRYEC 83
N RLK F K STL I + ED+G Y C
Sbjct: 56 NGRLKSTFNSKERYSTLHIKDAQLEDSGTYFC 87
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 28.2 bits (63), Expect = 0.91
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C G C + + C C GY G +C+
Sbjct: 127 CSGHGECV--EIINNYTCNCDVGYYGPQCQ 154
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 27.9 bits (62), Expect = 0.92
Identities = 15/111 (13%), Positives = 31/111 (27%), Gaps = 21/111 (18%)
Query: 20 VSVKLRQSLRLVCR-------------CKGNP------LPAVSWFKDNVEITTNKRLKIQ 60
+K Q+L + C L N R+ ++
Sbjct: 9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILE 68
Query: 61 FKKKRS--TLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMG 109
+ + ++ ED+G Y+C K+ F + + + G
Sbjct: 69 DYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTKGFSG 119
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 28.9 bits (64), Expect = 0.98
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 21 SVKLRQSLRLVCRCKGNPLPA----VSWFKDNVEITTNKRLKIQFKKK-----RSTLIIT 71
+ +R+S + C ++W + + + + K + ++ STL +
Sbjct: 124 DLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVG 183
Query: 72 RIRSEDAGRYECR 84
+ Y+CR
Sbjct: 184 TRDWIEGETYQCR 196
Score = 27.3 bits (60), Expect = 2.5
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 21 SVKLRQSLRLVCRCKG-NPLPA-VSWFKDNVEITTNKRLKIQFKKK-----RSTLIITRI 73
+++L+C G P ++W +D + + ++ +S L +++
Sbjct: 20 GGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQK 79
Query: 74 RSEDAGRYECR 84
Y C+
Sbjct: 80 HWLSDRTYTCQ 90
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 27.5 bits (61), Expect = 1.00
Identities = 12/84 (14%), Positives = 21/84 (25%), Gaps = 15/84 (17%)
Query: 15 SGLRNVSVKLRQSLRLVCR------------CKGNPLP-AVSWFKDNVEITTNKRLKIQF 61
S + + S+ + C C+ P R
Sbjct: 2 SLPEVLQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLT 61
Query: 62 KKKRS--TLIITRIRSEDAGRYEC 83
+ + ++ EDAG Y C
Sbjct: 62 DLGGGLLQVEMVTLQEEDAGEYGC 85
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 28.1 bits (63), Expect = 1.0
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 45 FKDNVEITTNKRLKIQFKK--KRSTLIITRIRSEDAGRYEC 83
E T + F+K LIIT + ED+ Y C
Sbjct: 51 DSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFC 91
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 28.4 bits (63), Expect = 1.1
Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 19/85 (22%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFK-------------DNVEITTNKRLKIQFKKK 64
RN + L C+ N + W++ T + +K
Sbjct: 7 RNKVAVTGGKVTLSCQQTNNH-NNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKAS 65
Query: 65 RS-----TLIITRIRSEDAGRYECR 84
R +LI+ Y C
Sbjct: 66 RPSQEQFSLILELATPSQTSVYFCA 90
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 28.9 bits (64), Expect = 1.1
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 111 PCPLDSYCLNGGSCTYYDTVGELV-----CQCAEGYKGQRCE 147
PC D G T + C+C +G+RC+
Sbjct: 380 PCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCD 421
Score = 26.6 bits (58), Expect = 5.9
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 118 CLNGGSCTYYDTVGELVCQCAEGYKGQRCES-KDVYNR 154
G + + C C KG CE D Y+
Sbjct: 264 APVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHD 301
Score = 25.8 bits (56), Expect = 9.1
Identities = 10/36 (27%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 112 CPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C G C G C C GQRC+
Sbjct: 443 CNPLGTIPGGNPC--DSETGY--CYCKRLVTGQRCD 474
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 28.8 bits (64), Expect = 1.1
Identities = 8/70 (11%), Positives = 14/70 (20%), Gaps = 6/70 (8%)
Query: 21 SVKLRQSLRLVCRCKG---NPLPAVSWFKDNVEITTNKRLKIQFKKKRST---LIITRIR 74
+ L L C G +W + + + S L
Sbjct: 258 DLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEP 317
Query: 75 SEDAGRYECR 84
+ C
Sbjct: 318 WNHGKTFTCT 327
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable
domain, human constant...; natural killer T cell
receptor, immune system; 1.60A {Mus musculus} PDB:
4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D
3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D
2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 28.5 bits (63), Expect = 1.1
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 2/34 (5%)
Query: 52 TTNKRLKIQFKK--KRSTLIITRIRSEDAGRYEC 83
R K +L I + D+ Y C
Sbjct: 57 KKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFC 90
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 28.0 bits (62), Expect = 1.2
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 25/99 (25%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFK--------------DNVEITTNKRLKIQFKKKR 65
V++ L + C P + W+ +++ + + K
Sbjct: 10 VTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGT 69
Query: 66 S--TLIITRIRSEDAGRYECR---------GTGVHKDVV 93
+ L T ++ D+ Y C GTG VV
Sbjct: 70 TSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQVV 108
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 28.3 bits (62), Expect = 1.3
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 112 CPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCES 148
C + C + +C+C GY G+ CE
Sbjct: 186 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCEC 222
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 28.4 bits (63), Expect = 1.3
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 106 DNMGGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKG 143
+ C + C+ G + C+C GY G
Sbjct: 106 KDKTHNCHKHAECIYLGH----FSDPMYKCECQTGYAG 139
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 28.3 bits (62), Expect = 1.4
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 134 VCQCAEGYKGQRCE 147
VC+C G+ G +CE
Sbjct: 459 VCRCGPGWLGSQCE 472
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 27.3 bits (61), Expect = 1.4
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 45 FKDNVEITTNKRLKIQFKK--KRSTLIITRIRSEDAGRYEC 83
E T + F+K LIIT + ED+ Y C
Sbjct: 51 DSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFC 91
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 27.9 bits (62), Expect = 1.4
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 10 HPIEVSGLRNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLI 69
+S +V + L C+ + + +K+ K + R++
Sbjct: 93 AKPSLSAQPGPAVSSGGDVTLQCQTR-YGFDQFALYKEG----DPAPYKNPERWYRASFP 147
Query: 70 ITRIRSEDAGRYECRG 85
I + + +G Y C
Sbjct: 148 IITVTAAHSGTYRCYS 163
Score = 27.5 bits (61), Expect = 2.0
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 13/54 (24%)
Query: 33 RCKGNPLPAV--SWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSEDAGRYECR 84
RC+G P K + ++ + L I ++ AGRY C
Sbjct: 28 RCQG-PPGVDLYRLEKLSSSRYQDQ----------AVLFIPAMKRSLAGRYRCS 70
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 28.4 bits (62), Expect = 1.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 134 VCQCAEGYKGQRCE 147
VC CA G G+ CE
Sbjct: 480 VCSCAPGRLGRLCE 493
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 27.2 bits (61), Expect = 1.5
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 16/81 (19%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFK------------DNVEITTNKRLKIQF---K 62
+S+ L C + +V WF+ N RLK F +
Sbjct: 9 SALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSER 67
Query: 63 KKRSTLIITRIRSEDAGRYEC 83
+ STL I + ED+G Y C
Sbjct: 68 ARYSTLHIRDAQLEDSGTYFC 88
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 28.5 bits (62), Expect = 1.6
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 6/46 (13%)
Query: 105 PDNMGGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKD 150
DN+ C G C + C C E + G C+ +
Sbjct: 528 IDNVYIGDGCLDMCSGHGRCV------QGSCVCDEQWGGLYCDEPE 567
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 27.7 bits (61), Expect = 2.0
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 42 VSWFKDNVEITTNKRLKIQFKK--KRSTLIITRIRSEDAGRYECRGTGVH 89
+ + + + R F+K IT + D+ Y C +G +
Sbjct: 51 IRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFY 100
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 27.6 bits (62), Expect = 2.0
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 19/83 (22%)
Query: 20 VSVKLRQSLRLVCRCKGNPLP-AVSWFK------------DNVEITTNKRLKIQ--FKKK 64
S L S +L C + W++ + + + I F
Sbjct: 10 ASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGS 69
Query: 65 RS----TLIITRIRSEDAGRYEC 83
S L I+ I+ ED Y C
Sbjct: 70 SSGADRYLSISNIQPEDEAIYIC 92
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 25.8 bits (57), Expect = 2.1
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 120 NGGSCTYY--DTVGELVCQCAEGYK----GQRCESKDVY 152
NGG C + + E+ C CA GY + C S + +
Sbjct: 5 NGG-CDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 27.3 bits (60), Expect = 2.2
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 112 CPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCES 148
C + C + +C+C GY G+ CE
Sbjct: 86 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCEC 122
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune
system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 229
Score = 27.3 bits (61), Expect = 2.3
Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 30/88 (34%)
Query: 20 VSVKLRQSLRLVCRCKGNPLP--AVSW----------------------FKDNVEITTNK 55
V V + L C KG + ++W FKDN + +
Sbjct: 11 VPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDI 70
Query: 56 RLKIQFKKKRSTLIITRIRSEDAGRYEC 83
K + L I D G Y C
Sbjct: 71 ------AKNLAVLKILAPSERDEGSYYC 92
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 26.9 bits (60), Expect = 2.4
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 21/82 (25%)
Query: 20 VSVKLRQSLRLVCRCKGN-PLPAVSWFKDNVEITTNKRLKIQFK-------------KKR 65
VSV +S L C P+ + WF+ + L K KR
Sbjct: 13 VSVAAGESATLRCAMTSLIPVGPIMWFRGAG---AGRELIYNQKEGHFPRVTTVSELTKR 69
Query: 66 S----TLIITRIRSEDAGRYEC 83
+ ++ I+ I DAG Y C
Sbjct: 70 NNLDFSISISNITPADAGTYYC 91
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I
3e2h_B 3e3q_D
Length = 226
Score = 27.3 bits (60), Expect = 2.5
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 17/81 (20%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPAVSWFK---------------DNVEITTNKRLKIQFKK- 63
V+V SL+L C+ + P + W+ + + + +F K
Sbjct: 19 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKS 78
Query: 64 -KRSTLIITRIRSEDAGRYEC 83
L + D+ Y C
Sbjct: 79 DSSFHLRKASVHWSDSAVYFC 99
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 27.2 bits (60), Expect = 2.6
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 110 GPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCE 147
C + ++ +G C C GY R +
Sbjct: 125 DECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNK 162
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, cell membrane, glycoprotein;
1.80A {Homo sapiens} PDB: 3rp1_A
Length = 106
Score = 26.6 bits (59), Expect = 2.6
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 33 RCKGNPLPAVSWF--KDNVEITTNKRLKIQFKKKRST--LIITRIRSEDAGRYECRG 85
C+G P+ ++ +++ + Q S I + +AG Y C
Sbjct: 29 VCRG-PVGVQTFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGPYRCIY 84
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 27.0 bits (60), Expect = 2.7
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 67 TLIITRIRSEDAGRYEC 83
TL I++ ++ D Y C
Sbjct: 71 TLTISKAQAGDEADYYC 87
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 26.9 bits (59), Expect = 2.9
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 48 NVEITTNKRLKIQFKKKRST--LIITRIRSEDAGRYEC 83
+ + ++ K S+ L + + D+ Y C
Sbjct: 53 DNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYC 90
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune
system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A*
3uyp_A* 3uzv_B 1dzb_A
Length = 253
Score = 27.3 bits (61), Expect = 3.0
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 26/86 (30%)
Query: 20 VSVKLRQSLRLVCRCKGNPLPA----VSWFK--------------DNVEITTNKRLKIQF 61
++V L Q + CR N + W++ N+E R F
Sbjct: 143 LAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPAR----F 198
Query: 62 KKKRS----TLIITRIRSEDAGRYEC 83
S TL I + ++D Y C
Sbjct: 199 SGSGSRTDFTLTINPVEADDVATYFC 224
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 26.4 bits (58), Expect = 3.0
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 48 NVEITTNKRLKI--QFKKKRSTLIITRIRSEDAGRYECR 84
V+ T R + + K TL I R DAGRY R
Sbjct: 68 AVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFR 106
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics,
protein initiative, northeast structural genomics
consortium; NMR {Salmonella enterica subsp}
Length = 121
Score = 26.5 bits (59), Expect = 3.1
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 5 LRATIHPIEVSGLRNVSVKLRQSLRLVCR-------CKGNPLPAVS 43
L A I ++ SG +V+ +L+Q + + R NP ++
Sbjct: 56 LLAPIKEVDTSGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMA 101
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 27.1 bits (60), Expect = 3.3
Identities = 5/44 (11%), Positives = 10/44 (22%), Gaps = 2/44 (4%)
Query: 110 GPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDVYN 153
S L+G S + C + + +
Sbjct: 266 STRIKKSKALSGFSLQ--SCRHSIPVFCHSSFYHDTDFLGEELD 307
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 27.1 bits (59), Expect = 3.4
Identities = 18/114 (15%), Positives = 26/114 (22%), Gaps = 29/114 (25%)
Query: 58 KIQFKKKRSTLIITRIRSEDAGRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPLDSY 117
I + I + + + C G V + V G PC
Sbjct: 378 NIPRLGELDGEITSTLVVQQGRTLNCSGGHVKLEEDVDLGYV-------EDGTPCGPQMM 430
Query: 118 CLNGGSCTYYDTVG---------------------ELVCQCAEGYKGQRCESKD 150
CL C + EL C C + G C +
Sbjct: 431 CLEH-RCLPVASFNFSTCLSSKEGTICSGNGVCSNELKCVCNRHWIGSDCNTYF 483
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 26.9 bits (59), Expect = 3.6
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 60 QFKKKRSTLIITRIRSEDAGRYEC 83
QF S + ++ + ED+ Y C
Sbjct: 69 QFDDYHSEMNMSALELEDSAMYFC 92
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 26.6 bits (59), Expect = 4.1
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 120 NGGSCTYY--DTVGELVCQCAEGYK----GQRCESKDVYNRSSM 157
C ++ C CA+GY+ ++C D +
Sbjct: 9 RTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVL 52
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 26.2 bits (58), Expect = 4.1
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 115 DSYCLNGGSCTYYDTVGELVCQCAEGYKGQRCESKDV 151
S C+NG C ++ G +C+C+ ++ +
Sbjct: 9 SSPCING-VCK--NSPGSFICECSSESTLDPTKTICI 42
Score = 26.2 bits (58), Expect = 4.7
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 112 CPLDSYCLNGGSCTYYDTVGELVCQCAEGYKGQ 144
C + G C +T G CQC G
Sbjct: 110 CEVFPGVCKNGLCV--NTRGSFKCQCPSGMTLD 140
>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 131
Score = 26.0 bits (57), Expect = 4.4
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 77 DAGRYECRGTGVHKDVVSAFAEVSINLRPDNMG-------GPCPLDSYCLNGGSCTY 126
D + + G G+ +V AE +I+ + G GPC C + G T
Sbjct: 30 DPSKVKAHGPGLEGGLVGKPAEFTIDTKGAGTGGLGLTVEGPCEAKIECSDNGDGTC 86
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 26.5 bits (57), Expect = 4.4
Identities = 11/72 (15%), Positives = 16/72 (22%), Gaps = 3/72 (4%)
Query: 79 GRYECRGTGVHKDVVSAFAEVSINLRPDNMGGPCPLDSYCLNGGSCTYYDTVGELVCQCA 138
+ C + E + +G C C+ V C C
Sbjct: 23 NHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIEN---PDPAQVNMYXCGCI 79
Query: 139 EGYKGQRCESKD 150
EGY
Sbjct: 80 EGYTLXEDTCVL 91
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 26.3 bits (58), Expect = 4.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 67 TLIITRIRSEDAGRYEC 83
TL I+R+ +ED G Y C
Sbjct: 114 TLKISRVEAEDLGIYYC 130
Score = 25.5 bits (56), Expect = 9.8
Identities = 15/75 (20%), Positives = 20/75 (26%), Gaps = 9/75 (12%)
Query: 21 SVKLRQSLRLVCRCKG-NPLPA-VSWFKDNVEITTNKRLKIQFKKKR-------STLIIT 71
+VC P V W D E + + STL +T
Sbjct: 165 EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT 224
Query: 72 RIRSEDAGRYECRGT 86
+ E Y C T
Sbjct: 225 KDEYERHNSYTCEAT 239
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 24.7 bits (54), Expect = 5.0
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 9/40 (22%)
Query: 120 NGG---SCTYYDTVGELVCQCAEGYK----GQRCESKDVY 152
NG C + +VC CA GY G+ C Y
Sbjct: 8 NGDCDQFCH--EEQNSVVCSCARGYTLADNGKACIPTGPY 45
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 25.9 bits (57), Expect = 5.3
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 18 RNVSVKLRQSLRLVCRCKG--NPLPAVSWFK------DNVEITTNKRLKIQFKK--KRST 67
R + + +SL + C + L W++ + I+ R K K +
Sbjct: 8 RTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFS 67
Query: 68 LIITRIRSEDAGRYEC 83
L I+ +R ED+G Y+C
Sbjct: 68 LRISDLRVEDSGTYKC 83
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 26.2 bits (58), Expect = 5.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 67 TLIITRIRSEDAGRYEC 83
TL I+R+ +ED G Y C
Sbjct: 110 TLRISRVEAEDLGVYYC 126
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 26.4 bits (57), Expect = 5.5
Identities = 9/90 (10%), Positives = 27/90 (30%), Gaps = 8/90 (8%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFKDNVEITTNKRLKIQFKKKRSTLIITRIRSED 77
V + S+ + C + + E K+ + R ++ ++ +
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPKLLGI-----ETPLPKKELLLPGNNRKVYELSNVQ--E 59
Query: 78 AGRYECRGTGVHKDVVSAFAEVSINLRPDN 107
+ C +A +++ P+
Sbjct: 60 DSQPMCYSN-CPDGQSTAKTFLTVYWTPER 88
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 26.4 bits (58), Expect = 6.4
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 7/39 (17%)
Query: 105 PDNMGGPCPLDSYCLNGGSCTYYDTVGELVCQCAEGYKG 143
PD C + C+ + G C CA G+ G
Sbjct: 22 PDGSPSECHEHADCVL-------ERDGSRSCVCAVGWAG 53
>3m7p_A FN1 protein; fibronectin, extracellular matrix, modular protein,
zinc BIN dimer, conformational change, cell adhesion;
HET: NAG 12P; 2.50A {Homo sapiens} PDB: 3mql_A* 1e88_A*
1e8b_A* 1qo6_A 2fn2_A*
Length = 308
Score = 26.1 bits (56), Expect = 6.5
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 105 PDNMGGPCPLDSYCLNGGSC--TYYDTVGELVCQCAEGYKGQ-RCESKDVYNRSSMYKPY 161
+ C +D N ++ L C C +G+ +C+ D S Y
Sbjct: 215 YSQLRDQCIVDDITYNVNDTFHKRHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFY 274
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, MHC class I molecule from B21
chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 25.4 bits (56), Expect = 7.1
Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 10/90 (11%)
Query: 2 SKGLRATIHPIEVSGLRNVSVKLRQSLRLVCRCKG--NPLPAVSWFKDNVEITTNKRLKI 59
GL +V L C G P +++ KD V + + +
Sbjct: 15 LLGLAQADLTPKVQVYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDM 74
Query: 60 QFKK-----KRSTLIITRIRSEDAGRYECR 84
F + T S Y C+
Sbjct: 75 SFNDDWTFQRLVHADFT-PSSGS--TYACK 101
>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction
with GP1BA, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 115
Score = 25.2 bits (55), Expect = 7.1
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 77 DAGRYECRGTGVHKDVVSAFAEVSINLRPDNMG-------GPCPLDSYCLNGGSCTY 126
++G G G+ V + A +I G GP + C++ T
Sbjct: 20 NSGSVSAYGPGLVYGVANKTATFTIVTEDAGEGGLDLAIEGPSKAEISCIDNKDGTC 76
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 25.5 bits (56), Expect = 7.2
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 64 KRSTLIITRIRSEDAGRYEC 83
+ I R D+G Y C
Sbjct: 81 HDFHMNILDTRRNDSGIYLC 100
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 26.0 bits (58), Expect = 8.8
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 18/82 (21%)
Query: 20 VSVKLRQSLRLVCRCKG----NPLPAVSWFK--------------DNVEITTNKRLKIQF 61
++V L Q + CR + + W++ N+E R
Sbjct: 11 LAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSG 70
Query: 62 KKKRSTLIITRIRSEDAGRYEC 83
+ TL I + ++D Y C
Sbjct: 71 SRTDFTLTIDPVEADDVATYYC 92
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment,
immune system; HET: PG4; 1.60A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L*
1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L*
1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K*
1mfe_L* 1mfb_L* ...
Length = 212
Score = 25.7 bits (57), Expect = 9.1
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 67 TLIITRIRSEDAGRYEC 83
L IT ++ED Y C
Sbjct: 74 ALTITGAQTEDEAIYFC 90
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable
domain, human constant...; natural killer T cell
receptor, immune system; 1.60A {Mus musculus} PDB:
4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E*
3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 25.8 bits (56), Expect = 9.1
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 20/85 (23%)
Query: 18 RNVSVKLRQSLRLVCRCKGNPLPAVSWFK--------------DNVEITTNKRLKIQFKK 63
+ + + Q + L C N W+K + + +K K QF
Sbjct: 10 SHQIIDMGQMVTLNCDPVSNH-LYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSV 68
Query: 64 KR-----STLIITRIRSEDAGRYEC 83
+R TL I ED+ Y C
Sbjct: 69 ERPDGSYFTLKIQPTALEDSAVYFC 93
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC
I, secreted, immune system; 2.10A {Ctenopharyngodon
idella}
Length = 97
Score = 24.6 bits (54), Expect = 9.3
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 10/71 (14%)
Query: 21 SVKLRQSLRLVCRCKG-NPLP-AVSWFKDNVEITTNKRLKIQFKK-----KRSTLIITRI 73
+ + L+C G +P ++ K+ I ++ + F+K ++
Sbjct: 14 PGEYGKENTLICYVSGFHPPDISIELLKNGEVIADAQQTDLAFEKGWQFHLTKSVSFK-P 72
Query: 74 RSEDAGRYECR 84
D Y C
Sbjct: 73 EKSD--EYSCS 81
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 25.8 bits (56), Expect = 9.6
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 22/86 (25%)
Query: 18 RNVSVKLRQSLRLVCRCKGNP-LPAVSWFK-------------------DNVEITTNKRL 57
R + Q ++ RC P V W++ +++T +
Sbjct: 35 RYLVKGQGQKAKM--RCIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFS 92
Query: 58 KIQFKKKRSTLIITRIRSEDAGRYEC 83
+L I + D+ Y C
Sbjct: 93 AECPSNSPCSLEIQSSEAGDSALYLC 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.427
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,650,149
Number of extensions: 144999
Number of successful extensions: 1333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 995
Number of HSP's successfully gapped: 631
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)