BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8426
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 111/138 (80%), Gaps = 1/138 (0%)
Query: 65 ELKPCYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMY 124
E+ PC RYS E N GA+IVAT++W++ND I LVGCIAEL++ EE LL G NDFSV Y
Sbjct: 134 EILPCNRYSSEQN-GAKIVATKEWKRNDKIELLVGCIAELSEIEENXLLRHGENDFSVXY 192
Query: 125 SCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFGD 184
S RKNCAQLWLGPAA+INHDCRPNC+FV+T RDTACVK LRDIE GEEI+C+YG+ FFG+
Sbjct: 193 STRKNCAQLWLGPAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGE 252
Query: 185 KNCLCECDTCEIRMKGAF 202
N CEC TCE R GAF
Sbjct: 253 NNEFCECYTCERRGTGAF 270
>pdb|3RQ4|A Chain A, Crystal Structure Of Suppressor Of Variegation 4-20
Homolog 2
Length = 247
Score = 194 bits (493), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 99/184 (53%), Positives = 128/184 (69%), Gaps = 7/184 (3%)
Query: 24 LNPSFWAFCVQALLAQRF-NIGRILDMGTQHHRYSYRIQYLPE----LKPCYRYSLEGNR 78
L ++ A + A+ F + G + + H Y Y +LPE + PC RYS+E N
Sbjct: 60 LEAAYRALTLGGWTARYFQSRGPRQEAALKTHVYRYLRAFLPESGFTILPCTRYSMETN- 118
Query: 79 GARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYSCRKNCAQLWLGPA 138
GA+IV+TR W+KN+ + LVGCIAEL +E ++ LL G NDFS+MYS RK AQLWLGPA
Sbjct: 119 GAKIVSTRAWKKNEKLELLVGCIAEL-READEGLLRAGENDFSIMYSTRKRSAQLWLGPA 177
Query: 139 AYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFGDKNCLCECDTCEIRM 198
A+INHDC+PNC+FV + + ACVKVLRDIE G+E+TCFYGE FFG+KN CEC TCE +
Sbjct: 178 AFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFGEKNEHCECHTCERKG 237
Query: 199 KGAF 202
+GAF
Sbjct: 238 EGAF 241
>pdb|1N3J|A Chain A, Structure And Substrate Of A Histone H3 Lysine
Methyltransferase From Paramecium Bursaria Chlorella
Virus 1
pdb|1N3J|B Chain B, Structure And Substrate Of A Histone H3 Lysine
Methyltransferase From Paramecium Bursaria Chlorella
Virus 1
pdb|2G46|A Chain A, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|2G46|B Chain B, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|3KMA|A Chain A, Crystal Structure Of Vset Under Condition A
pdb|3KMA|B Chain B, Crystal Structure Of Vset Under Condition A
pdb|3KMJ|A Chain A, Crystal Structure Of Vset Under Condition B
pdb|3KMT|A Chain A, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
pdb|3KMT|B Chain B, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
pdb|3KMT|C Chain C, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
Length = 119
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 115 TGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLR-----DIEQ 169
T L D+ ++S RKN + + LG A NH PN R TA +K +R I
Sbjct: 45 TALEDY--LFS-RKNMSAMALGFGAIFNHSKDPNAR----HELTAGLKRMRIFTIKPIAI 97
Query: 170 GEEITCFYGEDFF 182
GEEIT YG+D++
Sbjct: 98 GEEITISYGDDYW 110
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 139 AYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFG---------DKNCL- 188
+ +NH C PNC V ++ +RDIE GEE+T Y + D+ C
Sbjct: 202 SLLNHSCDPNCSIVFNGPHLL-LRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFE 260
Query: 189 CECDTCEIRMKGA 201
C+C C+ + K A
Sbjct: 261 CDCFRCQTQDKDA 273
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 139 AYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFG---------DKNCL- 188
+ +NH C PNC V ++ +RDIE GEE+T Y + D+ C
Sbjct: 203 SLLNHSCDPNCSIVFNGPHLL-LRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFE 261
Query: 189 CECDTCEIRMKGA 201
C+C C+ + K A
Sbjct: 262 CDCFRCQTQDKDA 274
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 139 AYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFG---------DKNCL- 188
+ +NH C PNC V ++ +RDIE GEE+T Y + D+ C
Sbjct: 202 SLLNHSCDPNCSIVFNGPHLL-LRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFE 260
Query: 189 CECDTCEIRMKGA 201
C+C C+ + K A
Sbjct: 261 CDCFRCQTQDKDA 273
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 139 AYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFG---------DKNCL- 188
+ +NH C PNC V ++ +RDIE GEE+T Y + D+ C
Sbjct: 204 SLLNHSCDPNCSIVFNGPHLL-LRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFE 262
Query: 189 CECDTCEIRMKGA 201
C+C C+ + K A
Sbjct: 263 CDCFRCQTQDKDA 275
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 139 AYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFG---------DKNCL- 188
+ +NH C PNC V ++ +RDIE GEE+T Y + D+ C
Sbjct: 238 SLLNHSCDPNCSIVFNGPHLL-LRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFE 296
Query: 189 CECDTCEIRMKGA 201
C+C C+ + K A
Sbjct: 297 CDCFRCQTQDKDA 309
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 139 AYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDF---------FGDKNCL- 188
+ +NH C PNC V ++ +RDIE GEE+T Y + D+ C
Sbjct: 203 SLLNHSCDPNCSIVFNGPHLL-LRAVRDIEVGEELTICYLDXLXTSEERRKQLRDQYCFE 261
Query: 189 CECDTCEIRMKGA 201
C+C C+ + K A
Sbjct: 262 CDCFRCQTQDKDA 274
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 101 IAELTKEEE--KRLLHTGLNDFSVMYSCRKNCAQLW-LGP----AAYINHDCRPNC---R 150
+ EL EEE R+ + +D + Y + ++ GP A ++NH C+PNC +
Sbjct: 122 VGELIDEEECRARIRYAQEHDITNFYMLTLDKDRIIDAGPKGNYARFMNHCCQPNCETQK 181
Query: 151 FVATERDTACVKVLRDIEQGEEITCFYGEDFFGDKNCLCEC 191
+ + L DI+ G E+T Y + G+ +C+C
Sbjct: 182 WSVNGDTRVGLFALSDIKAGTELTFNYNLECLGNGKTVCKC 222
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 131 AQLWLGPAAYINHDCRPNC--RFVATE-RDTACVKVLRDIEQGEEITCFYG---EDFFGD 184
A + A +INH C PNC R + + + + +R I +GEE+T Y ED
Sbjct: 118 ATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNK 177
Query: 185 KNCLCECDTC 194
C C C
Sbjct: 178 LPCNCGAKKC 187
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 136 GPAAYINHDCRPNCRFVATERDTA-------CVKVLRDIEQGEEITCFY 177
GP +INH C PN A D A + ++DI +G E+T Y
Sbjct: 219 GPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDY 267
>pdb|3M54|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
pdb|3M55|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10-K189me1 Peptide And
Adohcy
pdb|3M56|A Chain A, Set79 Y305F IN COMPLEX WITH TAF10-K189me2 Peptide And
Adohcy
Length = 261
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 28/111 (25%)
Query: 79 GARI----VATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYS-CRKNCAQL 133
G RI V +R W N N L+ +EE + D Y+ K CA L
Sbjct: 142 GVRITHQEVDSRDWALNGNT---------LSLDEETVI------DVPEPYNHVSKYCASL 186
Query: 134 WLGPAAYINHDCRPNCRF--VATER--DTACVKVLRDIEQGEEITCFYGED 180
NH PNC F R C++ LR +E EE+T YG D
Sbjct: 187 ----GHKANHSFTPNCIFDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD 233
>pdb|1XQH|A Chain A, Crystal Structure Of A Ternary Complex Of The
Methyltransferase Set9 (Also Known As Set79) WITH A P53
Peptide And Sah
pdb|1XQH|E Chain E, Crystal Structure Of A Ternary Complex Of The
Methyltransferase Set9 (Also Known As Set79) WITH A P53
Peptide And Sah
Length = 264
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 28/111 (25%)
Query: 79 GARI----VATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYS-CRKNCAQL 133
G RI V +R W N N L+ +EE + D Y+ K CA L
Sbjct: 145 GVRITHQEVDSRDWALNGNT---------LSLDEETVI------DVPEPYNHVSKYCASL 189
Query: 134 WLGPAAYINHDCRPNC---RFVATE-RDTACVKVLRDIEQGEEITCFYGED 180
NH PNC FV C++ LR +E EE+T YG D
Sbjct: 190 ----GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD 236
>pdb|2F69|A Chain A, Ternary Complex Of Set79 BOUND TO ADOHCY AND A TAF10
Peptide
pdb|3M53|A Chain A, Set79 IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
Length = 261
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 28/111 (25%)
Query: 79 GARI----VATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYS-CRKNCAQL 133
G RI V +R W N N L+ +EE + D Y+ K CA L
Sbjct: 142 GVRITHQEVDSRDWALNGNT---------LSLDEETVI------DVPEPYNHVSKYCASL 186
Query: 134 WLGPAAYINHDCRPNC---RFVATE-RDTACVKVLRDIEQGEEITCFYGED 180
NH PNC FV C++ LR +E EE+T YG D
Sbjct: 187 ----GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD 233
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 77 NRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLH-----TGLNDFSVMYSCRKNCA 131
+G ++AT+++ + D + G + E+T +++ L+ TG + Y + C
Sbjct: 38 GKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCV 97
Query: 132 QLWLGP---AAYINHDCRPNCRFVATERDTACVKVL---RDIEQGEEITCFYGE 179
INH NC+ + D +L RDI GEE+ YG+
Sbjct: 98 DATRETNRLGRLINHSKSGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGD 151
>pdb|4E47|A Chain A, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|B Chain B, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|C Chain C, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
pdb|4E47|D Chain D, Set79 IN COMPLEX WITH INHIBITOR
(R)-(3-(3-Cyanophenyl)-1-Oxo-1-
(Pyrrolidin-1-Yl)propan-2-Yl)-1,2,3,
4-Tetrahydroisoquinoline-6- Sulfonamide And
S-Adenosylmethionine
Length = 264
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 28/111 (25%)
Query: 79 GARI----VATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYS-CRKNCAQL 133
G RI V +R W N N L+ +EE + D Y+ K CA L
Sbjct: 139 GVRITHQEVDSRDWALNGNT---------LSLDEETVI------DVPEPYNHVSKYCASL 183
Query: 134 WLGPAAYINHDCRPNC---RFVATE-RDTACVKVLRDIEQGEEITCFYGED 180
NH PNC FV C++ LR +E EE+T YG D
Sbjct: 184 ----GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD 230
>pdb|3M57|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10 PEPTIDE AND ADOHCY
pdb|3M58|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10-K189me1 Peptide And
Adohcy
pdb|3M59|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10-K189me2 Peptide And
Adohcy
pdb|3M5A|A Chain A, Set79 Y245A IN COMPLEX WITH TAF10-K189me3 Peptide And
Adohcy
Length = 261
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 28/111 (25%)
Query: 79 GARI----VATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYS-CRKNCAQL 133
G RI V +R W N N L+ +EE + D Y+ K CA L
Sbjct: 142 GVRITHQEVDSRDWALNGNT---------LSLDEETVI------DVPEPYNHVSKYCASL 186
Query: 134 WLGPAAYINHDCRPNC---RFVATE-RDTACVKVLRDIEQGEEITCFYGED 180
NH PNC FV C++ LR +E EE+T YG D
Sbjct: 187 ----GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD 233
>pdb|1O9S|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Set79
pdb|1O9S|B Chain B, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Set79
Length = 259
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 28/111 (25%)
Query: 79 GARI----VATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYS-CRKNCAQL 133
G RI V +R W N N L+ +EE + D Y+ K CA L
Sbjct: 140 GVRITHQEVDSRDWALNGNT---------LSLDEETVI------DVPEPYNHVSKYCASL 184
Query: 134 WLGPAAYINHDCRPNC---RFVATE-RDTACVKVLRDIEQGEEITCFYGED 180
NH PNC FV C++ LR +E EE+T YG D
Sbjct: 185 ----GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD 231
>pdb|3CBM|A Chain A, Set79-Er-Adomet Complex
pdb|3CBO|A Chain A, Set7/9-er-adohcy Complex
pdb|3CBP|A Chain A, Set7/9-er-sinefungin Complex
pdb|3OS5|A Chain A, Set79-Dnmt1 K142me1 Complex
Length = 256
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 28/111 (25%)
Query: 79 GARI----VATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYS-CRKNCAQL 133
G RI V +R W N N L+ +EE + D Y+ K CA L
Sbjct: 137 GVRITHQEVDSRDWALNGNT---------LSLDEETVI------DVPEPYNHVSKYCASL 181
Query: 134 WLGPAAYINHDCRPNC---RFVATE-RDTACVKVLRDIEQGEEITCFYGED 180
NH PNC FV C++ LR +E EE+T YG D
Sbjct: 182 ----GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD 228
>pdb|1H3I|A Chain A, Crystal Structure Of The Histone Methyltransferase Set79
pdb|1H3I|B Chain B, Crystal Structure Of The Histone Methyltransferase Set79
Length = 293
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 28/111 (25%)
Query: 79 GARI----VATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYS-CRKNCAQL 133
G RI V +R W N N L+ +EE + D Y+ K CA L
Sbjct: 196 GVRITHQEVDSRDWALNGNT---------LSLDEETVI------DVPEPYNHVSKYCASL 240
Query: 134 WLGPAAYINHDCRPNC---RFVATE-RDTACVKVLRDIEQGEEITCFYGED 180
NH PNC FV C++ LR +E EE+T YG D
Sbjct: 241 ----GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD 287
>pdb|1N6C|A Chain A, Structure Of Set79
Length = 297
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 28/111 (25%)
Query: 79 GARI----VATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYS-CRKNCAQL 133
G RI V +R W N N L+ +EE + D Y+ K CA L
Sbjct: 178 GVRITHQEVDSRDWALNGNT---------LSLDEETVI------DVPEPYNHVSKYCASL 222
Query: 134 WLGPAAYINHDCRPNC---RFVATE-RDTACVKVLRDIEQGEEITCFYGED 180
NH PNC FV C++ LR +E EE+T YG D
Sbjct: 223 ----GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD 269
>pdb|1N6A|A Chain A, Structure Of Set7/9
Length = 259
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 28/111 (25%)
Query: 79 GARI----VATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYS-CRKNCAQL 133
G RI V +R W N N L+ +EE + D Y+ K CA L
Sbjct: 140 GVRITHQEVDSRDWALNGNT---------LSLDEETVI------DVPEPYNHVSKYCASL 184
Query: 134 WLGPAAYINHDCRPNC---RFVATE-RDTACVKVLRDIEQGEEITCFYGED 180
NH PNC FV C++ LR +E EE+T YG D
Sbjct: 185 ----GHKANHSFTPNCIYDXFVHPRFGPIKCIRTLRAVEADEELTVAYGYD 231
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 12 VPIQLACHLLNKLNP-SFWAFCVQALLAQRFNIGRILDMGTQHHRYSYRIQY 62
+PI++ + ++ F A C LL ++ ++DM T ++Y+++Y
Sbjct: 1 MPIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRY 52
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With
The Irreversible Iodoacetate Inhibitor
Length = 359
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 12 VPIQLACHLLNKLNP-SFWAFCVQALLAQRFNIGRILDMGTQHHRYSYRIQY 62
+PI++ + ++ F A C LL ++ ++DM T ++Y+++Y
Sbjct: 1 MPIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRY 52
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 12/49 (24%)
Query: 141 INHDCRPNCRFVATERDTACVK------------VLRDIEQGEEITCFY 177
+NHDC PNC + + VK L I +GEE+T Y
Sbjct: 204 VNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSY 252
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 131 AQLWLGPAAYINHDCRPN---CRFVATERDTACVKV----LRDIEQGEEITCFYGEDFFG 183
A+ + + +INH C PN R +D ++ R IE GE++ YGE F+
Sbjct: 208 ARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWD 267
Query: 184 DKNCLCEC 191
K L C
Sbjct: 268 IKGKLFSC 275
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 131 AQLWLGPAAYINHDCRPN---CRFVATERDTACVKV----LRDIEQGEEITCFYGEDFFG 183
A+ + + +INH C PN R +D ++ R IE GE++ YGE F+
Sbjct: 210 ARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWD 269
Query: 184 DKNCLCEC 191
K L C
Sbjct: 270 IKGKLFSC 277
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 77 NRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLH-----TGLNDFSVMYSCRKNCA 131
+G ++AT+++ + D + G + E+T +++ L+ TG + Y + C
Sbjct: 39 GKGRGVIATKQFSRGDFVVEFHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCV 98
Query: 132 QLWLGP---AAYINHDCRPNCRFVATERDTACVKVL---RDIEQGEEITCFYGE 179
INH NC+ + D +L RDI GEE+ YG+
Sbjct: 99 DATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGD 152
>pdb|3CAX|A Chain A, Crystal Structure Of Uncharacterized Protein Pf0695
Length = 369
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 78 RGARIVATRKWEKNDNIAYLVGCIAELTKEEEK 110
RG ++AT W K+D I ++ +AEL ++ E+
Sbjct: 80 RGLTVIATVLWTKHDEIRAMIKQLAELLRKREE 112
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 131 AQLWLGPAAYINHDCRPN---CRFVATERDTACVKV----LRDIEQGEEITCFYGEDFFG 183
A+ + + +INH C PN R +D ++ R IE GE++ YGE F+
Sbjct: 184 ARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWD 243
Query: 184 DKNCLCEC 191
K L C
Sbjct: 244 IKGKLFSC 251
>pdb|2JG0|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
1- Thiatrehazolin
pdb|2JJB|A Chain A, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|B Chain B, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|C Chain C, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2JJB|D Chain D, Family 37 Trehalase From Escherichia Coli In Complex With
Casuarine-6-O-Alpha-Glucopyranose
pdb|2WYN|A Chain A, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|B Chain B, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|C Chain C, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
pdb|2WYN|D Chain D, Structure Of Family 37 Trehalase From Escherichia Coli In
Complex With A Casuarine-6-O-A-D-Glucoside Analogue
Length = 535
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 14/66 (21%)
Query: 11 HVPIQLACHLLNKLNPSFWAFCVQALLAQRFNIGRILDMGTQHHRYSYRIQYLPELKPCY 70
H+P + L++ P F+A V+ L QH + QYLP+++ Y
Sbjct: 163 HIPNGNRSYYLSRSQPPFFALMVELL--------------AQHEGDAALKQYLPQMQKEY 208
Query: 71 RYSLEG 76
Y ++G
Sbjct: 209 AYWMDG 214
>pdb|1MT6|A Chain A, Structure Of Histone H3 K4-Specific Methyltransferase
Set79 WITH ADOHCY
Length = 280
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 42/109 (38%), Gaps = 28/109 (25%)
Query: 79 GARI----VATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYS-CRKNCAQL 133
G RI V +R W N N L+ +EE + D Y+ K CA L
Sbjct: 190 GVRITHQEVDSRDWALNGNT---------LSLDEETVI------DVPEPYNHVSKYCASL 234
Query: 134 WLGPAAYINHDCRPNC---RFVATE-RDTACVKVLRDIEQGEEITCFYG 178
NH PNC FV C++ LR +E EE+T YG
Sbjct: 235 ----GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYG 279
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 28 FWAFCVQALLAQRFNIGRILDMGTQHHRYSYRIQY 62
F A C LL ++ ++DM T ++Y+++Y
Sbjct: 18 FQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKY 52
>pdb|1MUF|A Chain A, Structure Of Histone H3 K4-Specific Methyltransferase
Set79
Length = 257
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 42/109 (38%), Gaps = 28/109 (25%)
Query: 79 GARI----VATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYS-CRKNCAQL 133
G RI V +R W N N L+ +EE + D Y+ K CA L
Sbjct: 167 GVRITHQEVDSRDWALNGNT---------LSLDEETVI------DVPEPYNHVSKYCASL 211
Query: 134 WLGPAAYINHDCRPNC---RFVATE-RDTACVKVLRDIEQGEEITCFYG 178
NH PNC FV C++ LR +E EE+T YG
Sbjct: 212 ----GHKANHSFTPNCIYDXFVHPRFGPIKCIRTLRAVEADEELTVAYG 256
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 77 NRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLH-----TGLNDFSVMYSCRKNCA 131
+G ++AT+++ + D + G + E+T +++ L+ TG + Y + C
Sbjct: 34 GKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCV 93
Query: 132 QLWLGP---AAYINHDCRPNCRFVATERDTACVKVL---RDIEQGEEITCFYGE 179
INH NC+ + D +L RDI GEE+ YG+
Sbjct: 94 DATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGD 147
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 77 NRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLH-----TGLNDFSVMYSCRKNCA 131
+G ++AT+++ + D + G + E+T +++ L+ TG + Y + C
Sbjct: 39 GKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCV 98
Query: 132 QLWLGP---AAYINHDCRPNCRFVATERDTACVKVL---RDIEQGEEITCFYGE 179
INH NC+ + D +L RDI GEE+ YG+
Sbjct: 99 DATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGD 152
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 77 NRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLH-----TGLNDFSVMYSCRKNCA 131
+G ++AT+++ + D + G + E+T +++ L+ TG + Y + C
Sbjct: 40 GKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCV 99
Query: 132 QLWLGP---AAYINHDCRPNCRFVATERDTACVKVL---RDIEQGEEITCFYGE 179
INH NC+ + D +L RDI GEE+ YG+
Sbjct: 100 DATRETNRLGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGD 153
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 138 AAYINHDCRPNCRFVATERDTA---CVKVLRDIEQGEEITCFYG-EDFFGDKNCLCEC 191
A +INH C PNC + + L+D+ G E+T Y F +K LC+C
Sbjct: 147 ARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQQLCKC 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,500,818
Number of Sequences: 62578
Number of extensions: 275668
Number of successful extensions: 632
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 43
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)