RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8426
(278 letters)
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor,
variegation 4-20 homolog 2, structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.80A
{Homo sapiens}
Length = 247
Score = 162 bits (411), Expect = 3e-49
Identities = 93/159 (58%), Positives = 115/159 (72%), Gaps = 6/159 (3%)
Query: 54 HRYSYRIQYLP----ELKPCYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEEE 109
H Y Y +LP + PC RYS+E GA+IV+TR W+KN+ + LVGCIAEL +E +
Sbjct: 91 HVYRYLRAFLPESGFTILPCTRYSMET-NGAKIVSTRAWKKNEKLELLVGCIAEL-READ 148
Query: 110 KRLLHTGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQ 169
+ LL G NDFS+MYS RK AQLWLGPAA+INHDC+PNC+FV + + ACVKVLRDIE
Sbjct: 149 EGLLRAGENDFSIMYSTRKRSAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEP 208
Query: 170 GEEITCFYGEDFFGDKNCLCECDTCEIRMKGAFAQSSVE 208
G+E+TCFYGE FFG+KN CEC TCE + +GAF E
Sbjct: 209 GDEVTCFYGEGFFGEKNEHCECHTCERKGEGAFRTRPRE 247
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone
methyltransferase, transcription regulat histone lysine,
SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo
sapiens}
Length = 273
Score = 162 bits (411), Expect = 6e-49
Identities = 102/207 (49%), Positives = 130/207 (62%), Gaps = 14/207 (6%)
Query: 1 MKSIVHNLILHVPIQLACHLLNKLNPSFWAFCVQALLAQRFNIGRILDMGTQHHRYSYRI 60
+K ++ ++ A L + + N ++ + + H + Y
Sbjct: 75 LKEVIERFKKDEHLEKAFKCLTSG-EWARHYFL--------NKNKMQEKLFKEHVFIYLR 125
Query: 61 QYLP----ELKPCYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTG 116
+ E+ PC RYS E GA+IVAT++W++ND I LVGCIAEL++ EE LL G
Sbjct: 126 MFATDSGFEILPCNRYSSE-QNGAKIVATKEWKRNDKIELLVGCIAELSEIEENMLLRHG 184
Query: 117 LNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCF 176
NDFSVMYS RKNCAQLWLGPAA+INHDCRPNC+FV+T RDTACVK LRDIE GEEI+C+
Sbjct: 185 ENDFSVMYSTRKNCAQLWLGPAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCY 244
Query: 177 YGEDFFGDKNCLCECDTCEIRMKGAFA 203
YG+ FFG+ N CEC TCE R GAF
Sbjct: 245 YGDGFFGENNEFCECYTCERRGTGAFK 271
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer;
NMR {Paramecium bursaria chlorella virus 1} SCOP:
b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Length = 119
Score = 73.1 bits (180), Expect = 1e-16
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 84 ATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYSCRKNCAQLWLGPAAYINH 143
A + +EK + + + + ++ L L M + LG A NH
Sbjct: 20 ARKSFEKGELVEECLCIV--RHNDDWGTALEDYLFSRKNMSAMA-------LGFGAIFNH 70
Query: 144 DCRPNCRFVATERD-TACVKVLRDIEQGEEITCFYGEDFFGDKN 186
PN R T + ++ I GEEIT YG+D++ +
Sbjct: 71 SKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRP 114
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET
domain, protein lysine methyltransferase, enzyme-
peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo
sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A*
3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A*
4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Length = 261
Score = 55.5 bits (133), Expect = 3e-09
Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 14/131 (10%)
Query: 73 SLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEE-EKRLLHTG-----LNDFSVMYSC 126
SL + G + + N +++ G +T +E + R L++ +V+
Sbjct: 116 SLISSAGEGLFSKVAVGPNTVMSFYNGVR--ITHQEVDSRDWALNGNTLSLDEETVIDVP 173
Query: 127 RKNC--AQLWLGPAAYINHDCRPNCRFVATER----DTACVKVLRDIEQGEEITCFYGED 180
++ NH PNC + C++ LR +E EE+T YG D
Sbjct: 174 EPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD 233
Query: 181 FFGDKNCLCEC 191
E
Sbjct: 234 HSPPGKSGPEA 244
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator,
alternative initiation, alternative splicing,
DNA-binding, metal-binding, nucleus; 1.79A {Homo
sapiens} PDB: 2jv0_A*
Length = 149
Score = 49.2 bits (117), Expect = 1e-07
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 4/136 (2%)
Query: 51 TQHHRYSYRIQYLPELKPCYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEK 110
T + ++ LPE + S + AT+ K VG + + +
Sbjct: 15 TLAEVPEHVLRGLPE-EVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKK-RSQVKN 72
Query: 111 RLLHTGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACV--KVLRDIE 168
+ + ++ + C Y+N C + + + K L+ I
Sbjct: 73 NVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIA 132
Query: 169 QGEEITCFYGEDFFGD 184
GEE+ +Y + +
Sbjct: 133 PGEELLVWYNGEDNPE 148
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12,
structural genomics, structural genomics consortium,
SGC, DNA-binding; 2.10A {Homo sapiens}
Length = 170
Score = 48.5 bits (115), Expect = 3e-07
Identities = 16/135 (11%), Positives = 33/135 (24%), Gaps = 9/135 (6%)
Query: 69 CYRYSLEGNRGARIVATRKWEKNDNIAYLVGCI---AELTKEEEKRLLHTGLNDFSVMYS 125
S G I + + + G + + + L+ N+ +
Sbjct: 30 IIAQSSIPGEGLGIFSKTWIKAGTEMGPFTGRVIAPEHVDICKNNNLMWEVFNEDGTVRY 89
Query: 126 CRKNCAQLWLGPAAYINHDCRP---NCRFVATERDTACVKVLRDIEQGEEITCFYGEDF- 181
+ YI N V K + I +E+ +YG
Sbjct: 90 FIDASQEDHRSWMTYIKCARNEQEQNLEVVQIGTS-IFYKAIEMIPPDQELLVWYGNSHN 148
Query: 182 -FGDKNCLCECDTCE 195
F + + +
Sbjct: 149 TFLGIPGVPGLEEDQ 163
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 49.5 bits (117), Expect = 4e-07
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 138 AAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFG----------DKNC 187
+ +NH C PNC V ++ +RDIE GEE+T Y +
Sbjct: 202 ISLLNHSCDPNCSIV-FNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCF 260
Query: 188 LCECDTCE 195
C+C C+
Sbjct: 261 ECDCFRCQ 268
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation,
chromosomal rearrangement, protein lysine
methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo
sapiens} PDB: 2w5z_A*
Length = 192
Score = 47.7 bits (114), Expect = 7e-07
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 136 GPAAYINHDCRPNC--RFVATERDTACV-KVLRDIEQGEEITCFYGEDFFGDKN---CLC 189
A +INH C PNC R + + V +R I +GEE+T Y N C C
Sbjct: 123 NAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLPCNC 182
Query: 190 ECDTC 194
C
Sbjct: 183 GAKKC 187
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 48.7 bits (115), Expect = 8e-07
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 11/68 (16%)
Query: 138 AAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFG----------DKNC 187
A +NH C PN + A V+ +++I G+E+ Y + +
Sbjct: 202 VALMNHSCCPNVIVT-YKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFF 260
Query: 188 LCECDTCE 195
CEC C
Sbjct: 261 TCECRECT 268
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 48.4 bits (115), Expect = 8e-07
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 11/69 (15%)
Query: 137 PAAYINHDCRPNCRFVATERDTA-------CVKVLRDIEQGEEITCFYGEDFFGDKN--- 186
+ +INH C PN V R IE GE++ YGE F+ K
Sbjct: 216 VSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLF 275
Query: 187 -CLCECDTC 194
C C C
Sbjct: 276 SCRCGSPKC 284
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 47.2 bits (111), Expect = 3e-06
Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 28/150 (18%)
Query: 118 NDFSVMYSCRKNCAQLWLGP-AAYINHDCRPNCRFV------------ATERDTACVKVL 164
N F++ + + P +NHDC PNC + + ++ L
Sbjct: 180 NGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRAL 239
Query: 165 RDIEQGEEITCFYG----------EDFFGDKNCLCECDTC-----EIRMKGAFAQSSVEP 209
I +GEE+T Y C C+ C + A
Sbjct: 240 GKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGLKDDLFLAAKEDPKPSQ 299
Query: 210 QTTQPSRYCLRDTDMRLNKRKLHKKLNRLL 239
+ + +DT +++K + + ++
Sbjct: 300 EVVKEMIQFSKDTLEKIDKARSEGLYHEVV 329
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus;
HET: SAM; 2.90A {Homo sapiens}
Length = 222
Score = 45.0 bits (107), Expect = 6e-06
Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 20/68 (29%)
Query: 140 YINHDCRPNCRFVATERDTACVKV----------LRDIEQGEEITCFYGEDFFGDKN--- 186
+INH C PNC V L+D+ G E+T Y F +
Sbjct: 149 FINHSCDPNCE-------MQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQQL 201
Query: 187 CLCECDTC 194
C C + C
Sbjct: 202 CKCGFEKC 209
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20
specific; SET domain, S-adenosyl-L methionine; HET: SAM;
1.75A {Homo sapiens}
Length = 232
Score = 45.1 bits (107), Expect = 8e-06
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 19/71 (26%)
Query: 136 GPAAYINHDCRPNCRFVATERDTACVKV----------LRDIEQGEEITCFYGEDFFGDK 185
A ++NH C+PNC T V L DI+ G E+T Y + G+
Sbjct: 164 NYARFMNHCCQPNCE-------TQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLGNG 216
Query: 186 N--CLCECDTC 194
C C C
Sbjct: 217 KTVCKCGAPNC 227
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 44.4 bits (105), Expect = 1e-05
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 19/67 (28%)
Query: 140 YINHDCRPNCRFVATERDTACVKV----------LRDIEQGEEITCFYGEDFFGD--KNC 187
++NH C PNC T V + + G E+T Y +G + C
Sbjct: 193 FMNHSCEPNCE-------TQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKC 245
Query: 188 LCECDTC 194
C C
Sbjct: 246 FCGSANC 252
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati
regulator, DNA damage, DNA repair, DNA-binding, nucleus,
ST genomics; HET: SAH; 1.59A {Homo sapiens}
Length = 290
Score = 43.3 bits (102), Expect = 4e-05
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 19/74 (25%)
Query: 140 YINHDCRPNCRFVATERDTACVKV----LRDIEQGEEITCFYGEDFFGD----------- 184
++NH C PN + D+ K+ +DI EE++ Y +
Sbjct: 208 FLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDH 267
Query: 185 ----KNCLCECDTC 194
K C C +C
Sbjct: 268 GKLRKPCYCGAKSC 281
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9
methyltransferase 2, H3 lysine-9 specific 2, alternative
splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Length = 300
Score = 43.4 bits (102), Expect = 4e-05
Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 32/150 (21%)
Query: 75 EGNRGARIVATRKWEKNDNIAYLVGCIAELTKEE-EKRLLHTGLNDFSVMYSCRKNCAQL 133
RG + K ++ + VG + +T EE E+R + ++ +
Sbjct: 148 SNGRGWGVKTLVKIKRMSFVMEYVGEV--ITSEEAERRGQFYDNKGITYLFDLDYESDEF 205
Query: 134 WL------GPAAYINHDCRPNCRFVATERDTACVKV-------LRDIEQGEEITCFYGED 180
+ + ++NH C PN + D ++ R I GEE+T Y
Sbjct: 206 TVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMK 265
Query: 181 FFGD----------------KNCLCECDTC 194
GD C C TC
Sbjct: 266 GSGDISSDSIDHSPAKKRVRTVCKCGAVTC 295
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1,
structural genomics, structural genomics consortium,
SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Length = 196
Score = 42.4 bits (99), Expect = 5e-05
Identities = 13/118 (11%), Positives = 32/118 (27%), Gaps = 6/118 (5%)
Query: 69 CYRYSLEGNRGARIVATRKWEKNDNIAYLVGCIA---ELTKEEEKRLL--HTGLNDFSVM 123
++Y+ +++ K L+G I + K ++ +
Sbjct: 61 LFKYATNSEEVIGVMSKEYIPKGTRFGPLIGEIYTNDTVPKNANRKYFWRIYSRGELHHF 120
Query: 124 YSCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGEDF 181
W+ + N + ++ I +E+ +Y DF
Sbjct: 121 IDGFNEEKSNWMRYVNPAHSPREQNLAACQNGMNIY-FYTIKPIPANQELLVWYCRDF 177
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent
methyltransferase histone H3 lysine- 9 methylation;
1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Length = 302
Score = 41.9 bits (98), Expect = 1e-04
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 20/75 (26%)
Query: 140 YINHDCRPNCRFVATERDTACVKV-------LRDIEQGEEITCFYGEDFFGDKN------ 186
+INH C PN A D A + ++DI +G E+T Y G ++
Sbjct: 223 FINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPS 282
Query: 187 -------CLCECDTC 194
CLC C
Sbjct: 283 KISEMTKCLCGTAKC 297
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET,
lysine, alternative splicing, cell cycle, cell division,
chromatin regulator, chromosomal protein, coiled coil;
HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A*
3f9z_A* 1zkk_A* 2bqz_A*
Length = 166
Score = 38.8 bits (91), Expect = 5e-04
Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 17/60 (28%)
Query: 140 YINHDCRPNCRFVATERDTACVKV----------LRDIEQGEEITCFYGEDFFGDKNCLC 189
INH NC+ T + RDI GEE+ YG+
Sbjct: 110 LINHSKCGNCQ-------TKLHDIDGVPHLILIASRDIAAGEELLFDYGDRSKASIEAHP 162
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4,
structural genomics, structural GE consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.15A {Homo
sapiens}
Length = 151
Score = 38.4 bits (89), Expect = 6e-04
Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 14/136 (10%)
Query: 56 YSYRIQYLPELKPCYRYSLEGNRGARIVATRKWEKNDNIAYLVG------CIAELTKEEE 109
S LP+ + R S+ G + L+G +AE T +
Sbjct: 14 ESRARLSLPK-QLVLRQSIVG-AEVGVWTGETIPVRTCFGPLIGQQSHSMEVAEWTDKAV 71
Query: 110 KRLLHTGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRP---NCRFVATERDTACVKVLRD 166
+ N + + ++ N + +D
Sbjct: 72 NHIWKIYHNGVLEFCIITTDENEC--NWMMFVRKARNREEQNLVAYPHDGKIF-FCTSQD 128
Query: 167 IEQGEEITCFYGEDFF 182
I E+ +Y D+
Sbjct: 129 IPPENELLFYYSRDYA 144
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4,
SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP:
b.85.7.1 PDB: 1mvx_A
Length = 299
Score = 39.8 bits (93), Expect = 6e-04
Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 23/78 (29%)
Query: 140 YINHDCRPNCRFVATERDTACVKV-------LRDIEQGEEITCFYGEDFFGD-------- 184
+ NH C PN + R+ + ++DI+ EE+T Y
Sbjct: 216 FFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQ 275
Query: 185 --------KNCLCECDTC 194
+ C C C
Sbjct: 276 QNRISKLRRQCKCGSANC 293
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.002
Identities = 42/263 (15%), Positives = 86/263 (32%), Gaps = 58/263 (22%)
Query: 47 LDMGTQHHRYSYRIQYLPELKPCYRYSLEGNR---GARIVATRKWEKNDNIA-------- 95
+D T H+Y Y+ L + + + + + + ++ E+ D+I
Sbjct: 7 MDFETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSK--EEIDHIIMSKDAVSG 63
Query: 96 --YLVGCIAELTKEEE--KRLLHTGLN-DFSVMYS-CRKNCAQLWLGPAAYI---NHDCR 146
L + L+K+EE ++ + L ++ + S + Q + YI +
Sbjct: 64 TLRLFWTL--LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 147 PNCRF----VATERDTACVK-VLRDIEQGEEITCFYGEDFFGDKNCLCECDTCEIRMKGA 201
N F V+ + ++ L ++ + + G G K + D C
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVLGSG-KTWVA-LDVC------- 171
Query: 202 FAQSSVEPQTTQPS-------RYCLRDTDMRLNKRKLHKKLNRLLLASDKNDTNSSDNSS 254
S + Q + C + + L +LL D N T+ SD+SS
Sbjct: 172 ---LSYKVQCKMDFKIFWLNLKNCNSPET-------VLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 255 KYSL-VQWNNNSKENIFDLGTFP 276
L + + +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYE 244
Score = 36.0 bits (82), Expect = 0.012
Identities = 43/265 (16%), Positives = 78/265 (29%), Gaps = 73/265 (27%)
Query: 61 QYLPELKPCYRYSLEGNRG-------ARIVATRKWEK--NDNIAYL-VG--CIAELTKEE 108
Q L EL+P ++G G + + K + + I +L + E E
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 109 EKRLLH------TGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVK 162
++LL+ T +D S R + Q L R + ++ C+
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-------------RLLKSKPYENCLL 248
Query: 163 VLRDIEQGEEITCFYGEDFFGDKNC--------------LCECDTCEIRMKGAFAQSSVE 208
VL +++ + F + +C L T I + + +
Sbjct: 249 VLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDH-HSMTLTP 300
Query: 209 PQTTQPSRYCLRDTDMRLNK-RKLHKKLNRLLL----ASDKNDTNSSDNSSKY------- 256
+ L+ D R + N L S ++ + DN
Sbjct: 301 DEVKS---LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 257 ----SL-VQWNNNSKENIFDLGTFP 276
SL V ++ L FP
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFP 382
Score = 35.6 bits (81), Expect = 0.016
Identities = 47/314 (14%), Positives = 84/314 (26%), Gaps = 76/314 (24%)
Query: 28 FWA-----FCVQALLAQRFNIGRILD-MGTQHHRYSYRIQYLPE----------LKPCYR 71
FW + +L + +D T +S I+ Y
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 72 YSL------------EG-NRGARI-VATRKWEKNDNIA-------YLVGCIAELTKEEEK 110
L N +I + TR + D ++ L LT +E K
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 111 RL----LHTGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRP-NCRFVATERDTACVKV-L 164
L L D N +L + + + N + V ++ T ++ L
Sbjct: 305 SLLLKYLDCRPQDLPRE-VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 165 RDIEQGEEITCFYGEDF--FGD-----KNCLC------ECDTCEIRMKGAFAQSSVEPQT 211
+E E F + F L + + S VE Q
Sbjct: 364 NVLEPAEYRKMF--DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 212 TQPSRYCLRDTDMRL-----NKRKLHKKL---NRLLLASDKNDTNSSDNSSKYS------ 257
+ S + + L N+ LH+ + + D +D +Y
Sbjct: 422 -KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL-IPPYLDQYFYSHIGH 479
Query: 258 -LVQWNNNSKENIF 270
L + + +F
Sbjct: 480 HLKNIEHPERMTLF 493
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens}
SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Length = 293
Score = 37.4 bits (87), Expect = 0.003
Identities = 34/119 (28%), Positives = 43/119 (36%), Gaps = 28/119 (23%)
Query: 71 RYSLEGNRGARI----VATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMY-S 125
+ G RI V +R W N N L +EE + D Y
Sbjct: 188 NTVMSFYNGVRITHQEVDSRDWALNGNTLSL---------DEETVI------DVPEPYNH 232
Query: 126 CRKNCAQLWLGPAAYINHDCRPNCRFVATER----DTACVKVLRDIEQGEEITCFYGED 180
K CA L G A NH PNC + C++ LR +E EE+T YG D
Sbjct: 233 VSKYCASL--GHKA--NHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD 287
>3smt_A Histone-lysine N-methyltransferase SETD3; histone
methyltransferase, histone modification, LYSI
translational modification, structural genomics; HET:
SAM; 2.04A {Homo sapiens}
Length = 497
Score = 37.1 bits (85), Expect = 0.004
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 138 AAYINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGE 179
NH E D L+D GE+I FYG
Sbjct: 273 WDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGT 314
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.006
Identities = 57/338 (16%), Positives = 96/338 (28%), Gaps = 134/338 (39%)
Query: 5 VHNLILHVP-------------IQ---LACHLLN----KLNPSFWAFCVQALL--AQRFN 42
+H L + I+ A + K + S AL N
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-------ALFRAVGEGN 153
Query: 43 IGRILDMGTQHHRYSYRIQYLPELKPCYR-YSLEGNRGARIVATRKWEKNDNIAYLVGCI 101
+ G Q Y EL+ Y+ Y + +V D I + +
Sbjct: 154 AQLVAIFGGQ----GNTDDYFEELRDLYQTYHV-------LVG-------DLIKFSAETL 195
Query: 102 AELTKE--EEKRLLHTGLN--------------DF--SVMYSCRKNC-AQLWLGPAAYI- 141
+EL + + +++ GLN D+ S+ SC QL A Y+
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL----AHYVV 251
Query: 142 ---NHDCRPNCRFVATERDTACVKVL---RDIEQGEEITCFYGEDFFG-DKNCL------ 188
P + T + L I + + E FF + +
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS-----WESFFVSVRKAITVLFFI 306
Query: 189 -CECDTCEIRMKGAFAQSSVEPQTTQ---------PSRYCLRDTDM----RLNKRKLHKK 234
C A+ +S+ P + PS M L + ++
Sbjct: 307 GVRC-------YEAYPNTSLPPSILEDSLENNEGVPSP-------MLSISNLTQEQVQDY 352
Query: 235 LNRLLLASDKNDTNSSDNSSKY---SLVQWNNNSKENI 269
+N+ TNS + K SLV N +N+
Sbjct: 353 VNK---------TNSHLPAGKQVEISLV----NGAKNL 377
Score = 32.3 bits (73), Expect = 0.21
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 42/104 (40%)
Query: 2 KSIVHNL---ILHVPIQLACHLLNKLNPSFWAFCVQALLAQRFNIGRILDMG----TQHH 54
SI + I+ +P++ W +F ILD G +
Sbjct: 473 GSISERIVDCIIRLPVK-------------WE------TTTQFKATHILDFGPGGASGLG 513
Query: 55 RYSYRIQYLPELKPCYRYSLEGNRGARIV--ATRKWEKNDNIAY 96
++R +G G R++ T +D+ +
Sbjct: 514 VLTHRN-------------KDG-TGVRVIVAGTLDINPDDDYGF 543
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase,
structural genomics, structural G consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.50A {Homo
sapiens}
Length = 152
Score = 35.4 bits (81), Expect = 0.008
Identities = 4/50 (8%), Positives = 14/50 (28%), Gaps = 4/50 (8%)
Query: 136 GPAAYINHDCRP---NCRFVATERDTACVKVLRDIEQGEEITCFYGEDFF 182
++ N ++++E +E+ +Y +
Sbjct: 95 NWMMFVRPAQNHLEQNLVAYQYGHHVY-YTTIKNVEPKQELKVWYAASYA 143
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine
methyltransferase, transferase, network VIA methyllysine
signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Length = 449
Score = 33.3 bits (75), Expect = 0.076
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 140 YINHDCRPNCRFVATERDTACVKVLRDIEQGEEITCFYGE 179
+NH N + + + + I +G EI YG+
Sbjct: 225 ILNHLANHNANLEYSA-NCLRMVATQPIPKGHEIFNTYGQ 263
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain,
protein lysine methyltransferase, transferase; HET: SAM;
2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB:
2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Length = 440
Score = 32.5 bits (73), Expect = 0.12
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 11/58 (18%)
Query: 132 QLWLGPAA-YINHDCRPNCRFVATER----------DTACVKVLRDIEQGEEITCFYG 178
L + P A INH A E +K ++ GE++ Y
Sbjct: 183 NLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYD 240
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.2 bits (67), Expect = 0.55
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 140 YINHDCRP---NCRFVATERDTACVKVLRDIEQGEEITCFYGEDFFGDKNCLCECDTCE 195
Y+ N + RDI GE + +Y ED+ + + +
Sbjct: 143 YVVISREEREQNLLAFQHSERIY-FRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHR 200
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Length = 394
Score = 28.8 bits (65), Expect = 1.9
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 35 ALLAQRFNIGRILDMGTQHHRYSYRIQYLPELKPCYRYSLEGNRGARIVATRKWEKNDNI 94
A LA++ RI + T H + P L R+ + + + A N+
Sbjct: 115 AYLAKQMIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGI--EQSDVVTAVSHSLINETH 172
Query: 95 AYLV 98
+
Sbjct: 173 ELVK 176
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate,
rossmann fold, alpha-aminoadipate pathway, fungal lysine
biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB:
2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Length = 394
Score = 27.7 bits (61), Expect = 4.7
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 79 GARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHT 115
GA IV W+ ++G + E+ + + L+H
Sbjct: 76 GAIIVPAGSWKTAPRDRIIIG-LKEMPETDTFPLVHE 111
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1
PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A*
1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Length = 1247
Score = 27.7 bits (61), Expect = 5.5
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 217 YCLRDTDM----RLNKRKLHKKLNRLLLASDKNDTNSSDNSSKYSLVQWNNNSK 266
Y R TDM L +R + R+L A+D D +N+ ++ V +N N +
Sbjct: 330 YVRRYTDMPMLVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGE 383
>3otn_A SUSD superfamily protein; putative outer membrane protein,
carbohydrate binding, structural genomics; HET: MSE;
1.95A {Parabacteroides distasonis}
Length = 482
Score = 27.4 bits (61), Expect = 6.3
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 8/29 (27%)
Query: 252 NSSKYSLVQW--------NNNSKENIFDL 272
S++Y+L NN E I+ +
Sbjct: 225 KSNEYTLFTDYESLRLPSQNNKGEFIYQV 253
>3iv0_A SUSD homolog; NP_809186.1, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Length = 481
Score = 27.1 bits (60), Expect = 8.5
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Query: 251 DNSSKYSLVQ-------WNNNSKENIFDL 272
N+ YSL+ + S E +F++
Sbjct: 240 RNNGAYSLLDINRSSVIFAGGSDEGLFEI 268
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.435
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,111,843
Number of extensions: 230579
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 41
Length of query: 278
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 186
Effective length of database: 4,133,061
Effective search space: 768749346
Effective search space used: 768749346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.3 bits)