RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8426
         (278 letters)



>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific
           methyltransferase SET7/9 catalytic domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 171

 Score = 63.6 bits (154), Expect = 4e-13
 Identities = 22/139 (15%), Positives = 38/139 (27%), Gaps = 10/139 (7%)

Query: 77  NRGARIVATRKWEKNDNIAYLVGCI------AELTKEEEKRLLHTGLNDFSVMYSCRKNC 130
           + G  + +      N  +++  G                   L         +     + 
Sbjct: 32  SAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHV 91

Query: 131 AQLWLGPAAYINHDCRPNCRFVATERD----TACVKVLRDIEQGEEITCFYGEDFFGDKN 186
           ++         NH   PNC +            C++ LR +E  EE+T  YG D      
Sbjct: 92  SKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGK 151

Query: 187 CLCECDTCEIRMKGAFAQS 205
              E          AF  +
Sbjct: 152 SGPEAPEWYQVELKAFQAT 170


>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27
           Methyltransferase {Paramecium bursaria chlorella virus
           1, PBCV-1 [TaxId: 10506]}
          Length = 119

 Score = 60.2 bits (145), Expect = 2e-12
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 10/111 (9%)

Query: 76  GNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYSCRKNCAQLWL 135
              G  + A + +EK + +   +  +     ++    L             RKN + + L
Sbjct: 12  PLGGYGVFARKSFEKGELVEECLCIVRH--NDDWGTALED-------YLFSRKNMSAMAL 62

Query: 136 GPAAYINHDCRPNCRFVATERDTACVKV-LRDIEQGEEITCFYGEDFFGDK 185
           G  A  NH   PN R   T          ++ I  GEEIT  YG+D++  +
Sbjct: 63  GFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLSR 113


>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 269

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 16/121 (13%)

Query: 76  GNRGARIVATRKWEKNDNIAYLVGCIAELTKEEEKRLLHTGLNDFSVMYSCRKN------ 129
             +G  + + R       I   +G     + E  KR  +   +  + ++           
Sbjct: 144 KEKGWGVRSLRFAPAGTFITCYLG-EVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEY 202

Query: 130 --CAQLWLGPAAYINHDCRPNCRFVATERDTA-------CVKVLRDIEQGEEITCFYGED 180
              AQ +   + + NH C PN    +  R+             ++DI+  EE+T  Y   
Sbjct: 203 TVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGA 262

Query: 181 F 181
            
Sbjct: 263 K 263


>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId:
           5141]}
          Length = 284

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 13/78 (16%)

Query: 130 CAQLWLGPAAYINHDCRPNCRFVATERDTACVKV-------LRDIEQGEEITCFYGEDFF 182
             +   GP  +INH C PN    A   D A   +       ++DI +G E+T  Y     
Sbjct: 205 DGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLT 264

Query: 183 G------DKNCLCECDTC 194
           G      D + + E   C
Sbjct: 265 GLESDAHDPSKISEMTKC 282


>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden
           pea (Pisum sativum) [TaxId: 3888]}
          Length = 261

 Score = 34.2 bits (77), Expect = 0.012
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 10/54 (18%)

Query: 138 AAYINHDCRPNCRFVATERDTAC----------VKVLRDIEQGEEITCFYGEDF 181
           A  INH         A E   A           +K    ++ GE++   Y  + 
Sbjct: 189 ADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNK 242


>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC
           {Erwinia carotovora [TaxId: 554]}
          Length = 230

 Score = 25.3 bits (54), Expect = 7.6
 Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 12/107 (11%)

Query: 111 RLLHTGLNDFSVMYSCRKNCAQLWLGPAAYINHDCRPNCRFVATERDTACVKVLRDIEQG 170
            +      DFS    CR    +                   +          +    +Q 
Sbjct: 119 VITGVCETDFSGYPDCRDEFVKALNQAIVLGIARDIRFETPLMWLNKAETWALADYYQQL 178

Query: 171 EEI-----TCFYGEDFFGDKNCLC-ECDTCEIRMKGAFAQSSVEPQT 211
           + +     TC+ G    G     C +C  C +R  G  AQ   +  T
Sbjct: 179 DTVRYHTLTCYNGIKGDG-----CGQCAACHLRANG-LAQYQKDAAT 219


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.435 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,027,682
Number of extensions: 46880
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 11
Length of query: 278
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,254,276
Effective search space: 243329544
Effective search space used: 243329544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.1 bits)