Query psy8428
Match_columns 328
No_of_seqs 195 out of 1515
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 18:36:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2603|consensus 100.0 8.8E-74 1.9E-78 523.5 25.6 296 32-327 26-329 (331)
2 PF04756 OST3_OST6: OST3 / OST 100.0 3.7E-34 8.1E-39 247.2 -0.1 139 160-298 1-145 (160)
3 cd03006 PDI_a_EFP1_N PDIa fami 99.8 3.7E-19 8E-24 145.0 11.6 106 44-165 7-113 (113)
4 cd03065 PDI_b_Calsequestrin_N 99.8 3.8E-18 8.1E-23 140.4 11.8 108 44-168 7-118 (120)
5 PF00085 Thioredoxin: Thioredo 99.8 7.3E-18 1.6E-22 132.8 12.7 103 48-168 1-103 (103)
6 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 4.7E-18 1E-22 135.4 11.3 103 46-165 1-104 (104)
7 cd02996 PDI_a_ERp44 PDIa famil 99.8 5.4E-18 1.2E-22 136.3 11.6 108 46-165 1-108 (108)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 6.2E-18 1.4E-22 134.2 11.4 100 46-164 1-100 (101)
9 KOG0910|consensus 99.8 4.3E-18 9.3E-23 143.0 10.7 105 48-170 45-149 (150)
10 PTZ00443 Thioredoxin domain-co 99.8 5.1E-17 1.1E-21 147.3 17.6 113 45-173 29-143 (224)
11 COG3118 Thioredoxin domain-con 99.7 1.6E-17 3.5E-22 153.3 11.1 110 46-171 23-132 (304)
12 cd02994 PDI_a_TMX PDIa family, 99.7 3.7E-17 8E-22 129.5 11.8 101 46-167 1-101 (101)
13 cd03002 PDI_a_MPD1_like PDI fa 99.7 4.3E-17 9.3E-22 130.6 11.4 107 47-166 1-109 (109)
14 cd03005 PDI_a_ERp46 PDIa famil 99.7 8.5E-17 1.8E-21 127.1 10.8 102 47-165 1-102 (102)
15 PRK09381 trxA thioredoxin; Pro 99.7 1.7E-16 3.8E-21 127.5 12.6 107 45-169 2-108 (109)
16 cd03001 PDI_a_P5 PDIa family, 99.7 2.5E-16 5.4E-21 124.6 11.6 101 48-165 2-102 (103)
17 cd02993 PDI_a_APS_reductase PD 99.7 3.8E-16 8.3E-21 126.0 10.9 105 47-165 2-109 (109)
18 cd03007 PDI_a_ERp29_N PDIa fam 99.7 5.3E-16 1.1E-20 126.5 11.0 103 46-169 1-116 (116)
19 cd02954 DIM1 Dim1 family; Dim1 99.7 1.5E-15 3.3E-20 123.5 12.8 77 53-140 2-78 (114)
20 PRK10996 thioredoxin 2; Provis 99.7 1.5E-15 3.3E-20 128.1 12.8 105 46-169 35-139 (139)
21 cd02963 TRX_DnaJ TRX domain, D 99.6 1.3E-15 2.8E-20 123.5 10.7 103 50-167 8-110 (111)
22 cd02998 PDI_a_ERp38 PDIa famil 99.6 1.5E-15 3.2E-20 120.2 10.4 104 47-165 1-105 (105)
23 cd02965 HyaE HyaE family; HyaE 99.6 2.1E-15 4.6E-20 121.9 11.2 101 43-162 7-109 (111)
24 cd02956 ybbN ybbN protein fami 99.6 2.1E-15 4.6E-20 118.2 10.9 96 54-166 1-96 (96)
25 TIGR01126 pdi_dom protein disu 99.6 2.3E-15 5E-20 118.4 10.6 102 51-169 1-102 (102)
26 cd02997 PDI_a_PDIR PDIa family 99.6 4.3E-15 9.3E-20 117.5 11.1 102 47-165 1-104 (104)
27 cd02957 Phd_like Phosducin (Ph 99.6 5.8E-15 1.3E-19 119.9 11.8 83 46-140 4-86 (113)
28 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 5.1E-15 1.1E-19 117.0 10.9 104 47-165 1-104 (104)
29 cd02962 TMX2 TMX2 family; comp 99.6 1E-14 2.2E-19 124.8 13.1 85 46-140 28-118 (152)
30 KOG0190|consensus 99.6 2.4E-15 5.3E-20 148.6 10.3 114 44-173 23-136 (493)
31 PHA02278 thioredoxin-like prot 99.6 8.7E-15 1.9E-19 117.3 10.8 92 54-164 5-100 (103)
32 cd02961 PDI_a_family Protein D 99.6 6.7E-15 1.5E-19 114.4 9.7 101 49-165 1-101 (101)
33 cd02999 PDI_a_ERp44_like PDIa 99.6 7.8E-15 1.7E-19 116.8 9.8 92 55-165 8-100 (100)
34 cd02987 Phd_like_Phd Phosducin 99.6 3.4E-14 7.5E-19 124.4 14.0 123 34-168 46-174 (175)
35 PLN02309 5'-adenylylsulfate re 99.6 1.3E-14 2.8E-19 143.8 12.5 113 43-168 342-456 (457)
36 cd02992 PDI_a_QSOX PDIa family 99.6 2.8E-14 6.1E-19 116.3 12.0 87 46-141 1-89 (114)
37 TIGR01068 thioredoxin thioredo 99.6 3.4E-14 7.4E-19 111.2 11.6 101 51-169 1-101 (101)
38 PTZ00102 disulphide isomerase; 99.6 4.3E-14 9.4E-19 141.2 14.6 112 46-174 32-143 (477)
39 cd02985 TRX_CDSP32 TRX family, 99.6 4.3E-14 9.3E-19 113.0 11.7 97 52-167 2-101 (103)
40 TIGR00424 APS_reduc 5'-adenyly 99.6 2.9E-14 6.3E-19 141.4 12.3 111 44-167 349-461 (463)
41 cd02948 TRX_NDPK TRX domain, T 99.6 5.5E-14 1.2E-18 112.1 11.6 96 52-167 6-101 (102)
42 PLN00410 U5 snRNP protein, DIM 99.5 5.7E-14 1.2E-18 118.5 12.0 114 53-182 11-137 (142)
43 KOG0907|consensus 99.5 8.6E-14 1.9E-18 112.0 11.1 85 66-168 21-105 (106)
44 cd02989 Phd_like_TxnDC9 Phosdu 99.5 1.3E-13 2.7E-18 112.3 12.0 105 47-165 5-112 (113)
45 cd02986 DLP Dim1 family, Dim1- 99.5 2E-13 4.4E-18 110.5 12.0 103 54-167 3-109 (114)
46 cd03000 PDI_a_TMX3 PDIa family 99.5 1.6E-13 3.5E-18 109.5 10.2 101 49-168 3-103 (104)
47 KOG0908|consensus 99.5 1.1E-13 2.5E-18 124.4 10.1 108 47-173 2-110 (288)
48 cd02988 Phd_like_VIAF Phosduci 99.5 4.5E-13 9.8E-18 119.0 13.3 122 33-168 66-191 (192)
49 cd02984 TRX_PICOT TRX domain, 99.5 2.9E-13 6.2E-18 106.0 10.6 96 52-165 1-96 (97)
50 TIGR01130 ER_PDI_fam protein d 99.5 3.3E-13 7.2E-18 133.7 13.0 112 47-173 2-113 (462)
51 PTZ00102 disulphide isomerase; 99.4 4.4E-13 9.4E-18 134.0 11.6 112 46-172 357-468 (477)
52 KOG0190|consensus 99.4 5E-13 1.1E-17 132.3 9.3 110 45-170 365-474 (493)
53 cd02949 TRX_NTR TRX domain, no 99.4 2.8E-12 6.1E-17 101.0 10.8 85 66-166 13-97 (97)
54 cd02953 DsbDgamma DsbD gamma f 99.4 1.8E-12 3.9E-17 103.2 9.7 95 54-166 2-104 (104)
55 cd02975 PfPDO_like_N Pyrococcu 99.4 2.6E-12 5.6E-17 104.6 10.6 91 66-171 22-112 (113)
56 cd02982 PDI_b'_family Protein 99.4 4.7E-12 1E-16 100.2 9.7 89 66-168 12-102 (103)
57 PTZ00051 thioredoxin; Provisio 99.4 8.7E-12 1.9E-16 97.8 10.9 79 48-140 2-81 (98)
58 cd02947 TRX_family TRX family; 99.3 8.7E-12 1.9E-16 94.8 10.4 92 54-165 1-92 (93)
59 cd02950 TxlA TRX-like protein 99.3 1.2E-11 2.6E-16 104.8 11.9 99 54-170 11-111 (142)
60 TIGR01295 PedC_BrcD bacterioci 99.3 2E-11 4.4E-16 100.8 11.3 100 46-166 6-121 (122)
61 cd02952 TRP14_like Human TRX-r 99.3 8.6E-12 1.9E-16 102.4 8.3 78 53-141 9-101 (119)
62 TIGR01130 ER_PDI_fam protein d 99.3 1.9E-11 4.1E-16 121.1 11.8 114 46-174 346-459 (462)
63 TIGR00411 redox_disulf_1 small 99.2 9.6E-11 2.1E-15 88.7 10.4 79 70-168 3-81 (82)
64 KOG4277|consensus 99.2 2.1E-11 4.5E-16 112.5 7.7 92 66-171 43-134 (468)
65 KOG0912|consensus 99.2 3.9E-11 8.5E-16 110.9 7.9 110 51-173 1-110 (375)
66 cd02951 SoxW SoxW family; SoxW 99.2 1.1E-10 2.4E-15 96.0 9.9 89 67-170 15-120 (125)
67 TIGR02187 GlrX_arch Glutaredox 99.2 6.6E-11 1.4E-15 106.9 7.8 103 52-172 9-114 (215)
68 KOG1731|consensus 99.1 5.8E-11 1.3E-15 117.9 7.0 88 44-140 37-126 (606)
69 KOG0191|consensus 99.1 3.2E-10 6.9E-15 111.0 9.8 111 46-174 29-139 (383)
70 KOG0191|consensus 99.1 6.7E-10 1.5E-14 108.7 10.4 110 48-172 146-255 (383)
71 TIGR02187 GlrX_arch Glutaredox 99.1 2.2E-09 4.8E-14 96.9 12.9 98 48-167 117-214 (215)
72 PRK00293 dipZ thiol:disulfide 99.0 1.5E-09 3.2E-14 111.5 11.4 107 48-168 454-569 (571)
73 PTZ00062 glutaredoxin; Provisi 99.0 2.6E-09 5.7E-14 95.7 11.0 91 52-170 5-95 (204)
74 KOG3356|consensus 99.0 1.7E-10 3.6E-15 91.8 2.4 114 208-321 26-145 (147)
75 cd02959 ERp19 Endoplasmic reti 99.0 6.5E-10 1.4E-14 91.1 5.8 69 65-143 18-89 (117)
76 cd02973 TRX_GRX_like Thioredox 99.0 2E-09 4.3E-14 78.7 7.4 56 70-136 3-58 (67)
77 PRK14018 trifunctional thiored 98.9 8.9E-09 1.9E-13 103.8 10.9 103 48-166 40-170 (521)
78 PRK11509 hydrogenase-1 operon 98.9 3.8E-08 8.1E-13 82.1 12.8 110 47-172 18-127 (132)
79 TIGR02738 TrbB type-F conjugat 98.8 6E-08 1.3E-12 83.2 12.3 86 69-168 53-152 (153)
80 PHA02125 thioredoxin-like prot 98.8 8.7E-09 1.9E-13 77.5 5.9 50 70-135 2-51 (75)
81 cd02955 SSP411 TRX domain, SSP 98.8 2.8E-08 6.2E-13 82.2 9.0 79 52-143 4-93 (124)
82 TIGR00412 redox_disulf_2 small 98.8 3.7E-08 8.1E-13 74.4 8.5 72 71-165 3-75 (76)
83 PRK03147 thiol-disulfide oxido 98.8 7.5E-08 1.6E-12 83.1 10.9 88 67-168 62-171 (173)
84 TIGR02740 TraF-like TraF-like 98.7 7E-08 1.5E-12 90.3 10.9 91 66-170 166-265 (271)
85 PF13098 Thioredoxin_2: Thiore 98.7 4.2E-08 9.2E-13 78.6 7.9 85 66-165 5-112 (112)
86 KOG0913|consensus 98.7 9E-09 1.9E-13 92.3 2.0 107 46-173 24-130 (248)
87 cd03009 TryX_like_TryX_NRX Try 98.6 2E-07 4.2E-12 77.1 8.8 70 66-142 18-111 (131)
88 cd02964 TryX_like_family Trypa 98.6 1.5E-07 3.3E-12 78.2 7.5 70 66-142 17-111 (132)
89 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 2.1E-07 4.6E-12 72.5 6.7 57 69-136 15-71 (89)
90 PRK15412 thiol:disulfide inter 98.5 2.2E-06 4.7E-11 75.6 13.1 86 66-169 68-176 (185)
91 TIGR00385 dsbE periplasmic pro 98.5 3.5E-07 7.7E-12 79.7 7.6 96 66-170 63-172 (173)
92 cd03008 TryX_like_RdCVF Trypar 98.5 6.8E-07 1.5E-11 76.0 9.0 73 66-142 25-124 (146)
93 PRK13728 conjugal transfer pro 98.5 2.9E-06 6.3E-11 74.5 12.8 92 66-172 70-174 (181)
94 cd02966 TlpA_like_family TlpA- 98.4 1.1E-06 2.4E-11 69.0 8.2 66 67-141 20-108 (116)
95 cd02958 UAS UAS family; UAS is 98.4 2.5E-06 5.4E-11 69.1 10.3 100 55-169 5-111 (114)
96 cd03010 TlpA_like_DsbE TlpA-li 98.4 1.6E-06 3.4E-11 71.2 8.8 72 66-141 25-111 (127)
97 PF07912 ERp29_N: ERp29, N-ter 98.4 9.5E-06 2.1E-10 66.3 12.8 113 46-174 4-124 (126)
98 COG4232 Thiol:disulfide interc 98.4 1.5E-06 3.2E-11 87.7 8.9 99 55-168 464-567 (569)
99 PF13848 Thioredoxin_6: Thiore 98.3 1E-05 2.3E-10 70.0 12.8 120 32-167 63-184 (184)
100 PF02114 Phosducin: Phosducin; 98.3 2.8E-06 6E-11 79.2 9.4 109 47-168 126-237 (265)
101 cd03011 TlpA_like_ScsD_MtbDsbE 98.3 3.7E-06 8.1E-11 68.3 9.1 86 67-163 21-120 (123)
102 PF01216 Calsequestrin: Calseq 98.3 4.9E-06 1.1E-10 78.9 10.3 120 41-176 29-151 (383)
103 PF13899 Thioredoxin_7: Thiore 98.3 8.5E-07 1.8E-11 67.6 4.0 63 66-139 17-82 (82)
104 PLN02919 haloacid dehalogenase 98.3 4.4E-06 9.5E-11 91.6 10.7 91 66-170 420-537 (1057)
105 PF13905 Thioredoxin_8: Thiore 98.2 7.5E-06 1.6E-10 63.5 8.6 66 68-141 3-93 (95)
106 KOG0914|consensus 98.2 5.3E-06 1.2E-10 73.9 8.5 83 48-140 126-215 (265)
107 smart00594 UAS UAS domain. 98.2 1.6E-05 3.5E-10 65.3 9.5 103 53-165 13-121 (122)
108 cd02967 mauD Methylamine utili 98.1 4.4E-06 9.5E-11 66.9 5.6 59 67-135 22-83 (114)
109 TIGR02196 GlrX_YruB Glutaredox 98.0 1.6E-05 3.5E-10 57.9 6.7 69 70-166 2-74 (74)
110 TIGR02661 MauD methylamine deh 98.0 3.9E-05 8.5E-10 67.9 10.0 87 65-167 73-177 (189)
111 cd01659 TRX_superfamily Thiore 98.0 2.2E-05 4.8E-10 53.9 6.5 60 70-140 1-63 (69)
112 cd03012 TlpA_like_DipZ_like Tl 98.0 3.6E-05 7.8E-10 63.2 8.5 67 67-142 24-117 (126)
113 cd02960 AGR Anterior Gradient 98.0 5.8E-05 1.3E-09 62.9 9.6 90 65-167 22-121 (130)
114 PF06110 DUF953: Eukaryotic pr 97.9 6.4E-05 1.4E-09 61.7 8.7 81 54-140 6-99 (119)
115 PF13728 TraF: F plasmid trans 97.9 9.5E-05 2.1E-09 66.9 10.0 83 68-164 122-213 (215)
116 COG0526 TrxA Thiol-disulfide i 97.9 4.2E-05 9E-10 59.1 6.6 65 66-140 32-99 (127)
117 TIGR02200 GlrX_actino Glutared 97.7 8.7E-05 1.9E-09 54.9 6.0 54 70-140 2-60 (77)
118 KOG3425|consensus 97.7 0.00015 3.3E-09 58.9 7.4 81 54-140 13-105 (128)
119 PF05768 DUF836: Glutaredoxin- 97.7 0.00016 3.4E-09 55.2 6.8 80 70-166 2-81 (81)
120 KOG1672|consensus 97.7 0.0005 1.1E-08 60.5 10.5 101 48-168 68-177 (211)
121 cd02969 PRX_like1 Peroxiredoxi 97.6 0.00034 7.4E-09 60.5 9.1 95 67-170 26-153 (171)
122 TIGR02180 GRX_euk Glutaredoxin 97.5 0.00016 3.5E-09 54.5 5.2 54 70-135 1-59 (84)
123 TIGR02739 TraF type-F conjugat 97.5 0.00077 1.7E-08 62.5 10.0 88 68-169 152-248 (256)
124 cd03072 PDI_b'_ERp44 PDIb' fam 97.5 0.0011 2.3E-08 53.8 9.7 103 48-169 1-108 (111)
125 PTZ00056 glutathione peroxidas 97.4 0.00085 1.8E-08 59.9 9.2 57 67-133 40-107 (199)
126 PLN02399 phospholipid hydroper 97.4 0.0011 2.4E-08 60.8 10.0 31 66-100 99-129 (236)
127 PF13192 Thioredoxin_3: Thiore 97.4 0.0015 3.2E-08 49.0 8.8 67 81-166 9-76 (76)
128 cd03073 PDI_b'_ERp72_ERp57 PDI 97.3 0.0021 4.5E-08 52.1 9.7 105 48-168 1-110 (111)
129 TIGR01626 ytfJ_HI0045 conserve 97.3 0.0017 3.7E-08 57.4 9.7 91 65-164 58-175 (184)
130 cd02983 P5_C P5 family, C-term 97.3 0.0013 2.8E-08 54.8 8.3 110 47-172 3-118 (130)
131 cd02976 NrdH NrdH-redoxin (Nrd 97.3 0.0008 1.7E-08 48.7 6.2 68 70-165 2-73 (73)
132 PF14595 Thioredoxin_9: Thiore 97.3 0.00059 1.3E-08 56.8 6.0 79 49-140 26-107 (129)
133 PRK11200 grxA glutaredoxin 1; 97.3 0.00064 1.4E-08 52.0 5.8 76 70-170 3-84 (85)
134 COG2143 Thioredoxin-related pr 97.3 0.0043 9.4E-08 52.9 11.1 94 63-165 39-145 (182)
135 PRK13703 conjugal pilus assemb 97.3 0.0019 4.1E-08 59.7 9.6 87 68-168 145-240 (248)
136 cd02991 UAS_ETEA UAS family, E 97.1 0.0036 7.8E-08 51.1 8.9 106 55-169 5-113 (116)
137 PLN02412 probable glutathione 97.1 0.0044 9.5E-08 53.7 9.9 41 67-116 30-70 (167)
138 PRK10877 protein disulfide iso 97.1 0.0017 3.6E-08 59.5 7.5 89 66-168 107-230 (232)
139 cd03015 PRX_Typ2cys Peroxiredo 97.1 0.0057 1.2E-07 53.0 10.5 106 68-182 31-171 (173)
140 KOG2501|consensus 97.0 0.0014 3.1E-08 56.0 5.6 72 66-142 33-127 (157)
141 cd00340 GSH_Peroxidase Glutath 97.0 0.0033 7.3E-08 53.3 8.0 40 67-116 23-62 (152)
142 PF08534 Redoxin: Redoxin; In 97.0 0.0033 7.1E-08 52.5 7.6 68 67-142 29-126 (146)
143 TIGR02540 gpx7 putative glutat 96.9 0.0081 1.8E-07 50.9 9.6 40 68-116 24-63 (153)
144 TIGR02183 GRXA Glutaredoxin, G 96.9 0.0062 1.3E-07 46.8 7.7 77 70-171 2-84 (86)
145 PF00462 Glutaredoxin: Glutare 96.8 0.0041 8.9E-08 44.1 6.0 51 70-136 1-55 (60)
146 TIGR03137 AhpC peroxiredoxin. 96.8 0.0069 1.5E-07 53.4 8.3 107 68-182 33-171 (187)
147 cd02981 PDI_b_family Protein D 96.7 0.024 5.2E-07 43.8 10.0 94 49-167 2-96 (97)
148 cd03020 DsbA_DsbC_DsbG DsbA fa 96.7 0.0037 8E-08 55.4 5.9 85 67-165 78-197 (197)
149 PRK10382 alkyl hydroperoxide r 96.6 0.012 2.6E-07 52.1 9.0 109 68-182 33-171 (187)
150 KOG0911|consensus 96.6 0.0019 4.1E-08 58.1 3.8 65 65-140 16-80 (227)
151 cd03419 GRX_GRXh_1_2_like Glut 96.6 0.004 8.8E-08 46.6 4.9 52 70-135 2-58 (82)
152 PRK15317 alkyl hydroperoxide r 96.6 0.018 3.8E-07 58.8 11.0 101 47-170 99-199 (517)
153 cd03016 PRX_1cys Peroxiredoxin 96.6 0.01 2.3E-07 53.0 8.1 106 67-182 27-168 (203)
154 PRK13190 putative peroxiredoxi 96.5 0.011 2.5E-07 52.8 8.0 110 67-182 29-168 (202)
155 TIGR03143 AhpF_homolog putativ 96.4 0.03 6.5E-07 57.7 11.4 96 47-165 459-554 (555)
156 PTZ00256 glutathione peroxidas 96.4 0.019 4.1E-07 50.4 8.5 38 69-115 44-81 (183)
157 TIGR02194 GlrX_NrdH Glutaredox 96.3 0.008 1.7E-07 44.3 5.1 66 71-163 2-70 (72)
158 cd02066 GRX_family Glutaredoxi 96.3 0.0086 1.9E-07 42.8 5.0 51 70-136 2-56 (72)
159 PRK13599 putative peroxiredoxi 96.3 0.017 3.7E-07 52.3 7.8 110 67-182 30-170 (215)
160 cd03017 PRX_BCP Peroxiredoxin 96.2 0.033 7.2E-07 45.8 8.8 29 68-100 25-54 (140)
161 PRK10329 glutaredoxin-like pro 96.1 0.029 6.2E-07 42.7 7.4 72 70-169 3-77 (81)
162 cd02970 PRX_like2 Peroxiredoxi 96.1 0.018 3.8E-07 47.8 6.7 46 67-121 25-70 (149)
163 PF13848 Thioredoxin_6: Thiore 96.1 0.04 8.6E-07 47.4 9.0 80 87-181 7-87 (184)
164 TIGR02181 GRX_bact Glutaredoxi 96.0 0.0089 1.9E-07 44.7 3.9 51 70-136 1-55 (79)
165 cd03418 GRX_GRXb_1_3_like Glut 96.0 0.02 4.4E-07 42.0 5.8 50 70-135 2-56 (75)
166 PF00578 AhpC-TSA: AhpC/TSA fa 96.0 0.027 5.9E-07 45.2 6.9 43 68-118 27-69 (124)
167 PRK15000 peroxidase; Provision 95.9 0.04 8.7E-07 49.2 8.3 111 67-182 35-176 (200)
168 TIGR03140 AhpF alkyl hydropero 95.9 0.082 1.8E-06 53.9 11.4 100 46-168 99-198 (515)
169 KOG3171|consensus 95.8 0.043 9.4E-07 49.2 8.0 107 48-168 140-250 (273)
170 TIGR02190 GlrX-dom Glutaredoxi 95.8 0.024 5.2E-07 42.6 5.5 55 66-136 6-63 (79)
171 PRK13189 peroxiredoxin; Provis 95.6 0.049 1.1E-06 49.5 7.9 111 66-182 36-177 (222)
172 PTZ00137 2-Cys peroxiredoxin; 95.6 0.073 1.6E-06 49.6 8.9 109 68-182 100-239 (261)
173 PRK00522 tpx lipid hydroperoxi 95.5 0.044 9.6E-07 47.3 6.9 28 68-99 46-74 (167)
174 cd03014 PRX_Atyp2cys Peroxired 95.5 0.049 1.1E-06 45.2 6.9 40 68-118 28-68 (143)
175 PF07449 HyaE: Hydrogenase-1 e 95.5 0.09 2E-06 42.3 7.9 88 42-140 5-92 (107)
176 PF03190 Thioredox_DsbH: Prote 95.5 0.027 5.8E-07 48.8 5.2 81 50-143 24-115 (163)
177 PRK13191 putative peroxiredoxi 95.3 0.079 1.7E-06 47.9 8.0 107 66-182 34-175 (215)
178 TIGR02189 GlrX-like_plant Glut 95.3 0.028 6E-07 44.5 4.4 50 70-135 10-66 (99)
179 cd02968 SCO SCO (an acronym fo 95.1 0.053 1.1E-06 44.7 5.9 44 68-117 24-68 (142)
180 cd03029 GRX_hybridPRX5 Glutare 95.1 0.062 1.4E-06 39.3 5.5 50 70-135 3-55 (72)
181 cd02972 DsbA_family DsbA famil 95.0 0.079 1.7E-06 39.8 6.2 59 70-138 1-91 (98)
182 cd03027 GRX_DEP Glutaredoxin ( 95.0 0.08 1.7E-06 38.9 6.0 50 70-135 3-56 (73)
183 KOG3414|consensus 95.0 0.33 7.1E-06 40.1 9.8 112 57-182 15-137 (142)
184 PRK09437 bcp thioredoxin-depen 95.0 0.13 2.9E-06 43.3 8.0 30 68-100 32-61 (154)
185 cd02971 PRX_family Peroxiredox 95.0 0.097 2.1E-06 42.9 7.0 41 68-117 24-65 (140)
186 cd03067 PDI_b_PDIR_N PDIb fami 94.9 0.2 4.4E-06 39.8 8.1 97 51-167 6-110 (112)
187 cd03018 PRX_AhpE_like Peroxire 94.7 0.083 1.8E-06 44.0 6.1 42 68-118 30-72 (149)
188 PTZ00253 tryparedoxin peroxida 94.7 0.17 3.8E-06 44.9 8.3 107 68-182 38-178 (199)
189 PHA03050 glutaredoxin; Provisi 94.5 0.083 1.8E-06 42.5 5.3 54 70-136 15-75 (108)
190 KOG3170|consensus 94.5 0.27 5.9E-06 43.8 8.7 118 35-169 74-201 (240)
191 COG0695 GrxC Glutaredoxin and 94.4 0.099 2.1E-06 39.7 5.3 51 70-136 3-59 (80)
192 PF11009 DUF2847: Protein of u 94.4 0.23 5E-06 39.8 7.5 93 53-161 7-104 (105)
193 PRK10638 glutaredoxin 3; Provi 94.4 0.095 2.1E-06 39.6 5.1 51 70-136 4-58 (83)
194 PRK10606 btuE putative glutath 94.2 0.19 4.1E-06 44.3 7.4 40 67-116 26-65 (183)
195 cd03028 GRX_PICOT_like Glutare 93.9 0.2 4.3E-06 38.7 6.2 57 68-136 9-69 (90)
196 cd03069 PDI_b_ERp57 PDIb famil 93.1 1.1 2.4E-05 35.4 9.3 97 49-168 3-103 (104)
197 cd03066 PDI_b_Calsequestrin_mi 93.0 1.4 3E-05 34.6 9.9 98 48-168 2-100 (102)
198 TIGR03143 AhpF_homolog putativ 92.5 0.81 1.8E-05 47.2 9.9 62 68-140 368-429 (555)
199 PRK11657 dsbG disulfide isomer 92.4 0.23 5E-06 46.0 5.2 43 119-167 208-250 (251)
200 TIGR00365 monothiol glutaredox 92.3 0.4 8.7E-06 37.6 5.8 44 81-136 26-73 (97)
201 KOG1752|consensus 91.4 0.72 1.6E-05 36.9 6.3 53 70-136 16-73 (104)
202 cd03023 DsbA_Com1_like DsbA fa 91.3 0.48 1E-05 39.1 5.5 29 67-99 6-34 (154)
203 PRK12759 bifunctional gluaredo 90.0 0.48 1E-05 47.1 5.1 51 70-136 4-66 (410)
204 cd03068 PDI_b_ERp72 PDIb famil 88.7 5.2 0.00011 31.9 9.4 100 48-168 2-107 (107)
205 TIGR02742 TrbC_Ftype type-F co 88.4 1.2 2.6E-05 37.1 5.6 55 114-168 55-114 (130)
206 PF09673 TrbC_Ftype: Type-F co 88.2 1.7 3.6E-05 35.3 6.2 71 53-139 10-80 (113)
207 PRK10824 glutaredoxin-4; Provi 88.0 0.87 1.9E-05 37.1 4.4 56 68-136 16-76 (115)
208 PF02966 DIM1: Mitosis protein 87.0 4.5 9.8E-05 33.7 8.1 69 57-137 12-81 (133)
209 PF13462 Thioredoxin_4: Thiore 86.4 2.3 4.9E-05 35.5 6.3 48 64-119 10-57 (162)
210 PTZ00062 glutaredoxin; Provisi 84.3 6.1 0.00013 35.5 8.3 57 68-136 114-174 (204)
211 cd03074 PDI_b'_Calsequestrin_C 84.1 21 0.00045 28.9 10.4 108 50-168 5-119 (120)
212 PRK10954 periplasmic protein d 78.7 2.1 4.6E-05 38.1 3.4 38 69-116 40-80 (207)
213 KOG4277|consensus 78.5 11 0.00024 35.9 8.0 82 81-168 266-350 (468)
214 cd03019 DsbA_DsbA DsbA family, 77.6 3.6 7.9E-05 34.9 4.4 29 67-99 16-44 (178)
215 cd03031 GRX_GRX_like Glutaredo 76.8 7.7 0.00017 33.0 6.1 56 69-136 2-66 (147)
216 COG1999 Uncharacterized protei 75.9 7.1 0.00015 35.0 5.9 76 49-128 50-127 (207)
217 PF01307 Plant_vir_prot: Plant 71.5 18 0.0004 28.9 6.6 57 177-255 3-63 (104)
218 PF02630 SCO1-SenC: SCO1/SenC; 67.2 9.8 0.00021 33.0 4.6 57 66-127 52-110 (174)
219 cd02978 KaiB_like KaiB-like fa 62.2 27 0.00059 26.0 5.5 62 70-140 4-65 (72)
220 PF01216 Calsequestrin: Calseq 61.1 1.6E+02 0.0035 28.8 11.8 129 29-180 129-258 (383)
221 PRK13730 conjugal transfer pil 60.1 17 0.00038 32.6 4.9 45 116-167 148-192 (212)
222 KOG2640|consensus 57.2 6.7 0.00014 37.3 1.8 106 48-170 56-163 (319)
223 TIGR02654 circ_KaiB circadian 56.0 40 0.00087 26.1 5.7 64 68-140 4-67 (87)
224 cd03040 GST_N_mPGES2 GST_N fam 53.9 40 0.00086 24.3 5.3 74 70-170 2-77 (77)
225 PRK09301 circadian clock prote 52.5 51 0.0011 26.3 5.9 66 66-140 5-70 (103)
226 PF00837 T4_deiodinase: Iodoth 51.1 15 0.00032 33.8 3.0 61 46-118 82-144 (237)
227 cd02977 ArsC_family Arsenate R 49.4 14 0.00031 28.9 2.4 88 71-179 2-94 (105)
228 PF03383 Serpentine_r_xa: Caen 49.2 28 0.00061 29.8 4.2 68 160-227 34-102 (153)
229 cd03060 GST_N_Omega_like GST_N 48.2 41 0.00089 23.9 4.5 51 71-135 2-53 (71)
230 PF13462 Thioredoxin_4: Thiore 47.7 33 0.00071 28.3 4.5 38 119-167 125-162 (162)
231 PF11287 DUF3088: Protein of u 46.4 1E+02 0.0022 25.0 6.8 88 78-172 20-110 (112)
232 cd03013 PRX5_like Peroxiredoxi 45.4 64 0.0014 27.2 6.0 55 69-128 32-88 (155)
233 cd03059 GST_N_SspA GST_N famil 44.3 74 0.0016 22.3 5.4 70 71-168 2-72 (73)
234 PF06570 DUF1129: Protein of u 42.3 40 0.00087 30.0 4.4 35 249-285 102-136 (206)
235 COG3088 CcmH Uncharacterized p 42.2 27 0.00059 29.8 3.0 40 150-189 72-111 (153)
236 PRK01655 spxA transcriptional 40.6 26 0.00057 28.9 2.8 89 70-179 2-94 (131)
237 PRK12559 transcriptional regul 40.2 26 0.00057 29.0 2.7 89 70-179 2-94 (131)
238 cd03041 GST_N_2GST_N GST_N fam 38.8 56 0.0012 23.7 4.1 70 71-168 3-76 (77)
239 cd00570 GST_N_family Glutathio 38.3 53 0.0011 22.0 3.7 51 72-136 3-55 (71)
240 CHL00036 ycf4 photosystem I as 38.2 73 0.0016 28.1 5.1 53 210-276 20-76 (184)
241 PRK03776 phosphoglycerol trans 37.3 1.6E+02 0.0035 31.8 8.6 75 197-279 15-92 (762)
242 COG1651 DsbG Protein-disulfide 36.0 1.6E+02 0.0035 26.4 7.5 42 48-94 67-108 (244)
243 COG2761 FrnE Predicted dithiol 35.7 71 0.0015 29.2 4.9 44 120-173 174-217 (225)
244 cd03036 ArsC_like Arsenate Red 35.1 35 0.00076 27.2 2.6 88 71-179 2-95 (111)
245 PRK02542 photosystem I assembl 34.9 86 0.0019 27.7 5.1 52 211-276 25-80 (188)
246 PF06764 DUF1223: Protein of u 33.2 51 0.0011 29.6 3.5 27 69-99 1-27 (202)
247 PRK13344 spxA transcriptional 32.9 40 0.00087 27.9 2.7 34 70-119 2-35 (132)
248 TIGR01617 arsC_related transcr 32.8 58 0.0013 26.0 3.6 34 71-120 2-35 (117)
249 PF13417 GST_N_3: Glutathione 32.6 1.9E+02 0.004 20.7 6.9 71 72-170 1-72 (75)
250 TIGR03147 cyt_nit_nrfF cytochr 32.0 96 0.0021 25.7 4.7 28 153-180 71-98 (126)
251 COG1331 Highly conserved prote 31.2 84 0.0018 33.3 5.2 80 51-143 31-121 (667)
252 cd03051 GST_N_GTT2_like GST_N 30.2 1.1E+02 0.0025 21.2 4.5 52 71-136 2-57 (74)
253 PF07689 KaiB: KaiB domain; I 30.0 35 0.00076 26.0 1.7 50 85-139 11-60 (82)
254 COG0295 Cdd Cytidine deaminase 29.4 68 0.0015 26.9 3.4 33 61-93 66-99 (134)
255 PLN02250 lipid phosphate phosp 27.6 3E+02 0.0065 26.4 7.9 25 216-240 104-128 (314)
256 cd02967 mauD Methylamine utili 26.9 61 0.0013 25.0 2.7 23 120-142 85-107 (114)
257 COG4713 Predicted membrane pro 26.8 52 0.0011 32.4 2.6 65 229-293 328-399 (489)
258 COG0382 UbiA 4-hydroxybenzoate 25.6 3.9E+02 0.0084 24.9 8.3 65 212-279 47-113 (289)
259 PRK10144 formate-dependent nit 25.5 1.4E+02 0.0031 24.7 4.6 28 153-180 71-98 (126)
260 KOG1364|consensus 24.9 1.2E+02 0.0025 29.6 4.5 58 108-169 132-189 (356)
261 cd03035 ArsC_Yffb Arsenate Red 24.6 52 0.0011 26.0 1.9 41 71-127 2-49 (105)
262 COG0838 NuoA NADH:ubiquinone o 24.4 4E+02 0.0088 21.9 8.6 67 214-285 20-86 (123)
263 PF01323 DSBA: DSBA-like thior 24.4 95 0.0021 26.4 3.7 41 116-166 153-193 (193)
264 cd03037 GST_N_GRX2 GST_N famil 24.2 1E+02 0.0022 21.7 3.2 50 72-135 3-52 (71)
265 PF13743 Thioredoxin_5: Thiore 23.2 1.2E+02 0.0027 26.1 4.1 25 72-100 2-26 (176)
266 COG1346 LrgB Putative effector 22.8 3E+02 0.0065 25.2 6.6 46 200-254 24-71 (230)
267 COG5429 Uncharacterized secret 22.5 88 0.0019 28.8 3.1 89 66-167 41-139 (261)
268 PF03929 PepSY_TM: PepSY-assoc 22.5 94 0.002 18.5 2.2 20 211-230 6-25 (27)
269 cd03032 ArsC_Spx Arsenate Redu 22.5 1.2E+02 0.0025 24.2 3.6 89 70-179 2-94 (115)
270 PF09323 DUF1980: Domain of un 22.3 1E+02 0.0022 26.8 3.5 24 37-60 146-169 (182)
271 PF11085 YqhR: Conserved membr 21.6 1.5E+02 0.0033 25.9 4.2 16 296-311 133-148 (173)
272 PF08806 Sep15_SelM: Sep15/Sel 21.2 1.3E+02 0.0028 22.6 3.3 36 130-169 41-76 (78)
273 PF13743 Thioredoxin_5: Thiore 20.8 81 0.0018 27.3 2.5 22 118-139 135-156 (176)
274 PF06220 zf-U1: U1 zinc finger 20.3 35 0.00077 22.0 0.1 12 78-89 2-13 (38)
275 PF10810 DUF2545: Protein of u 20.2 80 0.0017 23.4 1.9 21 212-234 3-23 (80)
276 PF12273 RCR: Chitin synthesis 20.1 1.2E+02 0.0026 24.8 3.3 19 218-236 9-27 (130)
277 PRK07668 hypothetical protein; 20.1 4.1E+02 0.0089 24.7 7.0 34 211-244 142-175 (254)
No 1
>KOG2603|consensus
Probab=100.00 E-value=8.8e-74 Score=523.50 Aligned_cols=296 Identities=47% Similarity=0.877 Sum_probs=278.7
Q ss_pred hHHHHHHHHhhhhCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCC--cE
Q psy8428 32 LGDRVLHLSEMNAKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSN--KL 109 (328)
Q Consensus 32 ~~~~~~~L~~l~~~~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~--~v 109 (328)
+++++.+|.+|.++++||++||++|.++++.+||||+++|+|||.+|+..|+.|++++.||+.||++|..++++++ ++
T Consensus 26 ls~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tkl 105 (331)
T KOG2603|consen 26 LSNKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKL 105 (331)
T ss_pred HHHHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceE
Confidence 7999999999999999999999999999998899999999999999999999999999999999999998766555 89
Q ss_pred EEEEEECcCChhhHHHcCCCcCceEEEecCC-CCCCCCCceeeeecccCHHHHHHHHHhhcCCcc-eeeCCCCCchhHHH
Q psy8428 110 FFILVDFDEGSDVFQMLRLNTAPIFMHFPAK-GKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI-RVFRPPNYSGPMAF 187 (328)
Q Consensus 110 ~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~-g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~i-~i~~p~~~~~~~~~ 187 (328)
+|++||++|.|++||+++++++||+.+|+|. ++++++++++.++.+.+||++++|++++|++++ .|.||+||++.++.
T Consensus 106 FF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~si~rPp~~s~~iiv 185 (331)
T KOG2603|consen 106 FFCMVDYDESPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVRSIQRPPNYSKPIIV 185 (331)
T ss_pred EEEEEeccccHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheeeeeecCCcccchhHH
Confidence 9999999999999999999999999999776 555677888887778889999999999999997 59999999999998
Q ss_pred HHHHHHHHhhhheeccccchhcchhhHHHHHHHHHHHHhhhhhhhhhcCCCceeccCC-c-eEEEcCCCccchhhHHHHH
Q psy8428 188 IMLFAIVAVFLYVKRNNLEFLYNKLMWGVAAVLFCFAMISGQMWNHIRGPPFIHKNQN-G-IAYIHGSSQGQFVLETYIV 265 (328)
Q Consensus 188 ~~~~~~~~~~~~~~k~~~~~~~~r~~w~~~sl~~i~~~isG~mfn~Ir~~P~~~~~~~-G-~~y~~~g~~~QfgiE~~iv 265 (328)
+++++++.++++.||+.++++.||.+|+++|++++++|+||+|||+|||+||+++||+ | ++||+|++|+|||+||++|
T Consensus 186 aliva~i~~li~~k~~~l~fl~~r~~w~~lsl~i~f~~iSG~M~n~IR~~P~~~~dp~~~~~~f~~g~Sq~Qf~aEtfiV 265 (331)
T KOG2603|consen 186 ALIVALIGGLIYKKRSNLTFLSNRTIWAVLSLFIVFFMISGQMWNHIRGPPYAIKDPHTGKVVFIHGSSQAQFGAETFIV 265 (331)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHhheeeeechhHHHHhcCCcceeeCCCCCeEEEEeCCcchhhhhhhHHH
Confidence 9999988888999999999999999999999999999999999999999999999985 5 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccccCcc--cchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCccccc
Q psy8428 266 ILLNAAIVVGMILISEAATRKNDVR--VRRTMAVVGLGLVAFFFSVILSIFRSKAHGYPYSFLI 327 (328)
Q Consensus 266 ~~~Y~~l~~~~i~L~~~~p~~~~~~--~~~~~~~~~~~~i~~~fs~l~sif~~K~~~YPf~l~~ 327 (328)
+++|+++++++++|++.+...++.. +++.+.+.++.+.+++||+++++||+|+|||||.++.
T Consensus 266 ~lly~~v~ll~vll~~~~~~~~~~~~~k~~~l~~~~i~~~~vFfs~~ls~f~~ky~gYPy~~l~ 329 (331)
T KOG2603|consen 266 GLLYGVVSLLMVLLTEAATSSKSIDYQKRKMLLIAGLSCVAVFFSVLLSVFRIKYPGYPYSFLS 329 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCcCccc
Confidence 9999999999999999998887766 7788899999999999999999999999999999875
No 2
>PF04756 OST3_OST6: OST3 / OST6 family; InterPro: IPR021149 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex.; PDB: 3G7Y_A 3G9B_A 3GA4_A.
Probab=99.98 E-value=3.7e-34 Score=247.21 Aligned_cols=139 Identities=40% Similarity=0.751 Sum_probs=12.8
Q ss_pred HHHHHHHhhcCCcc-eeeCCCCCchh-HHHHHHHHHHHhhhheeccccchhcchhhHHHHHHHHHHHHhhhhhhhhhcCC
Q psy8428 160 AIVKWIADRTDIQI-RVFRPPNYSGP-MAFIMLFAIVAVFLYVKRNNLEFLYNKLMWGVAAVLFCFAMISGQMWNHIRGP 237 (328)
Q Consensus 160 ~l~~fl~~~t~~~i-~i~~p~~~~~~-~~~~~~~~~~~~~~~~~k~~~~~~~~r~~w~~~sl~~i~~~isG~mfn~Ir~~ 237 (328)
++++|++++++++. +|+||+||+.. ..++++++++++++++||..++.++||.+|+++|++++++++||+|||+|||+
T Consensus 1 ~~a~f~~~~t~i~~~~i~~P~~~~~~~~~i~~~i~~~~~~~~~k~~~~~~~~~r~lw~~~sl~~~~~~~SG~mfn~Ir~~ 80 (160)
T PF04756_consen 1 QIAPFVKFRTGIPIFKIYRPPNYSKPSIFITFFIVFVAVFLYIKRSILPFLRSRFLWAVLSLIIILLSTSGYMFNIIRGP 80 (160)
T ss_dssp -HHHHHHHHHHHHT-------S----------------------------------------------------------
T ss_pred ChhhHHHHHcCCCeeEEeCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 58999999999885 99999999875 55556666566677778888888999999999999999999999999999999
Q ss_pred CceeccCCc---eEEEcCCCccchhhHHHHHHHHHHHHHHHHHHhhhccccccCcccc-hhhhhh
Q psy8428 238 PFIHKNQNG---IAYIHGSSQGQFVLETYIVILLNAAIVVGMILISEAATRKNDVRVR-RTMAVV 298 (328)
Q Consensus 238 P~~~~~~~G---~~y~~~g~~~QfgiE~~iv~~~Y~~l~~~~i~L~~~~p~~~~~~~~-~~~~~~ 298 (328)
||+++|+|| ++|++||+|+|||+||+++|++|+++|+++++|++.+|+..+..++ +...+.
T Consensus 81 P~~~~~~~g~~~i~f~~g~~~~QfgiE~~iv~~ly~~la~~~i~L~~~~~~~~~~~~~~~~~~~~ 145 (160)
T PF04756_consen 81 PFIGRDPDGSRPIYFFSGGSQGQFGIEGQIVSFLYGVLALGFILLIYAAPKKKNSPKQRRILLIS 145 (160)
T ss_dssp -----------------------------------------------------------------
T ss_pred CccccCCCCCCceEEecCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhccccCCcchhhhhHHHH
Confidence 999999987 8999999999999999999999999999999999999877655544 444433
No 3
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.80 E-value=3.7e-19 Score=145.01 Aligned_cols=106 Identities=13% Similarity=0.116 Sum_probs=88.6
Q ss_pred hCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhH
Q psy8428 44 AKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVF 123 (328)
Q Consensus 44 ~~~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf 123 (328)
+.++|++||++||++.+.-..++..++|+|||+ ||++|+.+.|+|+++|+.+. +.+.|+++|++++++++
T Consensus 7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~----WC~~Ck~l~p~~~~la~~~~------~~v~~~~Vd~d~~~~l~ 76 (113)
T cd03006 7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAP----WDAQSQAARQEFEQVAQKLS------DQVLFVAINCWWPQGKC 76 (113)
T ss_pred CCCCeEEechhhhHHHHhcccCCCEEEEEEECC----CCHHHHHHHHHHHHHHHHhc------CCeEEEEEECCCChHHH
Confidence 456799999999999742123466799999999 99999999999999999985 46999999999999999
Q ss_pred -HHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHH
Q psy8428 124 -QMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 124 -~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl 165 (328)
++|+|+++||+.+|++|.. ...| .|++++++|.+|+
T Consensus 77 ~~~~~I~~~PTl~lf~~g~~---~~~y---~G~~~~~~i~~~~ 113 (113)
T cd03006 77 RKQKHFFYFPVIHLYYRSRG---PIEY---KGPMRAPYMEKFV 113 (113)
T ss_pred HHhcCCcccCEEEEEECCcc---ceEE---eCCCCHHHHHhhC
Confidence 5899999999999987632 1223 5889999999874
No 4
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.77 E-value=3.8e-18 Score=140.35 Aligned_cols=108 Identities=16% Similarity=0.243 Sum_probs=92.8
Q ss_pred hCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCcc--ch--hhHHHHHHHHHHcccccCCCCcEEEEEEECcCC
Q psy8428 44 AKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHI--CV--SASDEYTIVANSFRYSQMYSNKLFFILVDFDEG 119 (328)
Q Consensus 44 ~~~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~--C~--~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~ 119 (328)
.++.|++||++||++.+.++ +..++++|+|+ ||++ |+ .++|.++++|..+.+. +++.|++||++++
T Consensus 7 ~~~~v~~lt~~nF~~~v~~~--~~~vvv~f~a~----wc~p~~Ck~~~~~p~~~~~aa~~l~~----~~v~~~kVD~d~~ 76 (120)
T cd03065 7 GKDRVIDLNEKNYKQVLKKY--DVLCLLYHEPV----ESDKEAQKQFQMEELVLELAAQVLED----KGIGFGLVDSKKD 76 (120)
T ss_pred CCcceeeCChhhHHHHHHhC--CceEEEEECCC----cCChhhChhhcchhhHHHHHHHHhhc----CCCEEEEEeCCCC
Confidence 35679999999999998754 66899999999 9987 99 8899999999888421 5699999999999
Q ss_pred hhhHHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhh
Q psy8428 120 SDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 120 ~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
++++++|||+++||+++|+.| + ..+ ..|.++++++.+||++.
T Consensus 77 ~~La~~~~I~~iPTl~lfk~G-~-----~v~-~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 77 AKVAKKLGLDEEDSIYVFKDD-E-----VIE-YDGEFAADTLVEFLLDL 118 (120)
T ss_pred HHHHHHcCCccccEEEEEECC-E-----EEE-eeCCCCHHHHHHHHHHH
Confidence 999999999999999999987 2 234 35888999999999875
No 5
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.77 E-value=7.3e-18 Score=132.83 Aligned_cols=103 Identities=17% Similarity=0.382 Sum_probs=90.7
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcC
Q psy8428 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (328)
Q Consensus 48 VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~ 127 (328)
|+.+|+++|++.+.+ .+..++|+|+++ ||++|+.+.|.++++++.+. +++.|+++|++++++++++++
T Consensus 1 v~~lt~~~f~~~i~~--~~~~vvv~f~~~----~C~~C~~~~~~~~~~~~~~~------~~v~~~~vd~~~~~~l~~~~~ 68 (103)
T PF00085_consen 1 VIVLTDENFEKFINE--SDKPVVVYFYAP----WCPPCKAFKPILEKLAKEYK------DNVKFAKVDCDENKELCKKYG 68 (103)
T ss_dssp SEEESTTTHHHHHTT--TSSEEEEEEEST----TSHHHHHHHHHHHHHHHHTT------TTSEEEEEETTTSHHHHHHTT
T ss_pred CEECCHHHHHHHHHc--cCCCEEEEEeCC----CCCccccccceecccccccc------cccccchhhhhccchhhhccC
Confidence 678999999999853 356899999999 99999999999999999985 379999999999999999999
Q ss_pred CCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhh
Q psy8428 128 LNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 128 v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
++++|++++|.+|. ......|..++++|.+||+++
T Consensus 69 v~~~Pt~~~~~~g~------~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 69 VKSVPTIIFFKNGK------EVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp CSSSSEEEEEETTE------EEEEEESSSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCc------EEEEEECCCCHHHHHHHHHcC
Confidence 99999999999872 223335778999999999875
No 6
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.76 E-value=4.7e-18 Score=135.42 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=86.9
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
++++++|++||++.+.++ +..++|.|||+ ||++|+.+.|.|+++|+.+. +.+.|+++|++++++++++
T Consensus 1 ~~v~~l~~~~f~~~i~~~--~~~v~v~f~a~----wC~~C~~~~p~~~~~~~~~~------~~~~~~~vd~~~~~~~~~~ 68 (104)
T cd03004 1 PSVITLTPEDFPELVLNR--KEPWLVDFYAP----WCGPCQALLPELRKAARALK------GKVKVGSVDCQKYESLCQQ 68 (104)
T ss_pred CcceEcCHHHHHHHHhcC--CCeEEEEEECC----CCHHHHHHHHHHHHHHHHhc------CCcEEEEEECCchHHHHHH
Confidence 358899999999998643 33799999999 99999999999999999984 4699999999999999999
Q ss_pred cCCCcCceEEEecCCCCCCCCCceeeeecccC-HHHHHHHH
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYS-AEAIVKWI 165 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~-a~~l~~fl 165 (328)
++|+++||+++|++|++. .....|..+ +++|.+||
T Consensus 69 ~~i~~~Pt~~~~~~g~~~-----~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 69 ANIRAYPTIRLYPGNASK-----YHSYNGWHRDADSILEFI 104 (104)
T ss_pred cCCCcccEEEEEcCCCCC-----ceEccCCCCCHHHHHhhC
Confidence 999999999999987332 122246665 89999885
No 7
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.76 E-value=5.4e-18 Score=136.29 Aligned_cols=108 Identities=18% Similarity=0.213 Sum_probs=88.7
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
++|++++++||++.+. . +..++|.|+|+ ||++|+++.|.|+++|+.+.+..+..+++.|+++|++++++++++
T Consensus 1 ~~v~~l~~~~f~~~i~-~--~~~vlv~F~a~----wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~ 73 (108)
T cd02996 1 SEIVSLTSGNIDDILQ-S--AELVLVNFYAD----WCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADR 73 (108)
T ss_pred CceEEcCHhhHHHHHh-c--CCEEEEEEECC----CCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHh
Confidence 4689999999999873 3 34689999999 999999999999999998754333234699999999999999999
Q ss_pred cCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHH
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl 165 (328)
+|++++||+++|++|... ...+ .|.++.++|.+||
T Consensus 74 ~~v~~~Ptl~~~~~g~~~--~~~~---~g~~~~~~l~~fi 108 (108)
T cd02996 74 YRINKYPTLKLFRNGMMM--KREY---RGQRSVEALAEFV 108 (108)
T ss_pred CCCCcCCEEEEEeCCcCc--ceec---CCCCCHHHHHhhC
Confidence 999999999999886311 1222 4788899999985
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.76 E-value=6.2e-18 Score=134.20 Aligned_cols=100 Identities=15% Similarity=0.251 Sum_probs=85.4
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
+.|++||++||++.+. . +..++|+|||+ ||++|+++.|+|+++|+.+. +.+.|+++|++++++++++
T Consensus 1 ~~~~~l~~~~f~~~v~-~--~~~~~v~f~a~----wC~~C~~~~p~~~~~a~~~~------~~~~~~~vd~~~~~~~~~~ 67 (101)
T cd03003 1 PEIVTLDRGDFDAAVN-S--GEIWFVNFYSP----RCSHCHDLAPTWREFAKEMD------GVIRIGAVNCGDDRMLCRS 67 (101)
T ss_pred CCeEEcCHhhHHHHhc-C--CCeEEEEEECC----CChHHHHhHHHHHHHHHHhc------CceEEEEEeCCccHHHHHH
Confidence 3589999999999874 3 35799999999 99999999999999999885 4699999999999999999
Q ss_pred cCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHH
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKW 164 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~f 164 (328)
++++++||+++|+.|.. ...| .|..+.++|.+|
T Consensus 68 ~~v~~~Pt~~~~~~g~~---~~~~---~G~~~~~~l~~f 100 (101)
T cd03003 68 QGVNSYPSLYVFPSGMN---PEKY---YGDRSKESLVKF 100 (101)
T ss_pred cCCCccCEEEEEcCCCC---cccC---CCCCCHHHHHhh
Confidence 99999999999987621 1223 477888988887
No 9
>KOG0910|consensus
Probab=99.76 E-value=4.3e-18 Score=142.98 Aligned_cols=105 Identities=15% Similarity=0.209 Sum_probs=92.9
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcC
Q psy8428 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (328)
Q Consensus 48 VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~ 127 (328)
+-.+++++|++.|.++ +-+|+|+|+|+ ||+||+.+.|..++++..|. +++.|+++|+|+++++..+|+
T Consensus 45 ~~~~s~~~~~~~Vi~S--~~PVlVdF~A~----WCgPCk~l~P~l~~~~~~~~------g~~k~~kvdtD~~~ela~~Y~ 112 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVINS--DVPVLVDFHAE----WCGPCKMLGPILEELVSEYA------GKFKLYKVDTDEHPELAEDYE 112 (150)
T ss_pred ccccCHHHHHHHHHcc--CCCEEEEEecC----cCccHhHhhHHHHHHHHhhc------CeEEEEEEccccccchHhhcc
Confidence 5557889999999866 55799999999 99999999999999999985 689999999999999999999
Q ss_pred CCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcC
Q psy8428 128 LNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (328)
Q Consensus 128 v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~ 170 (328)
|+++||+++|+.| +..+.-.|..+.+.+.+||++.++
T Consensus 113 I~avPtvlvfknG------e~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 113 ISAVPTVLVFKNG------EKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eeeeeEEEEEECC------EEeeeecccCCHHHHHHHHHHHhc
Confidence 9999999999987 234444678899999999998754
No 10
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.75 E-value=5.1e-17 Score=147.32 Aligned_cols=113 Identities=12% Similarity=0.214 Sum_probs=95.3
Q ss_pred CCCeEEeChhhHHHHHHcC--CCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhh
Q psy8428 45 KKAVLRFDGQKYKEYIKNG--PRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDV 122 (328)
Q Consensus 45 ~~~VI~L~~~nf~~~v~~~--~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~l 122 (328)
+++|+++|++||++.+..+ ..+..++|.|||+ ||++|+.++|+|+++|+.+. +.+.|+++|+++++++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyAp----WC~~Ck~~~P~~e~la~~~~------~~v~~~~VD~~~~~~l 98 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAP----WCSHCRKMAPAWERLAKALK------GQVNVADLDATRALNL 98 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECC----CChHHHHHHHHHHHHHHHcC------CCeEEEEecCcccHHH
Confidence 4679999999999987532 1245789999999 99999999999999999985 4699999999999999
Q ss_pred HHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCcc
Q psy8428 123 FQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI 173 (328)
Q Consensus 123 f~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~i 173 (328)
+++|+|+++||+++|+.| + .++...|..+.+++.+|+.+......
T Consensus 99 ~~~~~I~~~PTl~~f~~G-~-----~v~~~~G~~s~e~L~~fi~~~~~~~~ 143 (224)
T PTZ00443 99 AKRFAIKGYPTLLLFDKG-K-----MYQYEGGDRSTEKLAAFALGDFKKAL 143 (224)
T ss_pred HHHcCCCcCCEEEEEECC-E-----EEEeeCCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999976 2 23444466899999999998875443
No 11
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.6e-17 Score=153.28 Aligned_cols=110 Identities=14% Similarity=0.245 Sum_probs=99.2
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
.+|+++|+.||++.|....+.-+|+|+|||| ||++|+++.|..++++.+|. +++.+++||+|++|.+..+
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap----~~~~c~qL~p~Lekla~~~~------G~f~LakvN~D~~p~vAaq 92 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAP----WCGPCKQLTPTLEKLAAEYK------GKFKLAKVNCDAEPMVAAQ 92 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCC----CCchHHHHHHHHHHHHHHhC------CceEEEEecCCcchhHHHH
Confidence 4599999999999998788888999999999 99999999999999999996 7899999999999999999
Q ss_pred cCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCC
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDI 171 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~ 171 (328)
|||+++||++.|++| .+. +.+ .|....+++.+|+.++.+.
T Consensus 93 fgiqsIPtV~af~dG-qpV--dgF---~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 93 FGVQSIPTVYAFKDG-QPV--DGF---QGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred hCcCcCCeEEEeeCC-cCc--ccc---CCCCcHHHHHHHHHHhcCh
Confidence 999999999999997 222 222 4677888999999999887
No 12
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.73 E-value=3.7e-17 Score=129.53 Aligned_cols=101 Identities=14% Similarity=0.208 Sum_probs=85.6
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
++|++||++||++.+ .+ + ++|.|||+ ||++|+++.|.|+++|+.+. ..++.|+++|++++++++++
T Consensus 1 ~~v~~l~~~~f~~~~-~~--~--~lv~f~a~----wC~~C~~~~p~~~~l~~~~~-----~~~v~~~~vd~~~~~~~~~~ 66 (101)
T cd02994 1 SNVVELTDSNWTLVL-EG--E--WMIEFYAP----WCPACQQLQPEWEEFADWSD-----DLGINVAKVDVTQEPGLSGR 66 (101)
T ss_pred CceEEcChhhHHHHh-CC--C--EEEEEECC----CCHHHHHHhHHHHHHHHhhc-----cCCeEEEEEEccCCHhHHHH
Confidence 468999999999976 33 2 68999999 99999999999999998753 23699999999999999999
Q ss_pred cCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHh
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~ 167 (328)
++++++||+++|++| + .....|..+.++|.+|+++
T Consensus 67 ~~i~~~Pt~~~~~~g-~------~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 67 FFVTALPTIYHAKDG-V------FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred cCCcccCEEEEeCCC-C------EEEecCCCCHHHHHHHHhC
Confidence 999999999999775 2 1223578899999999864
No 13
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.72 E-value=4.3e-17 Score=130.59 Aligned_cols=107 Identities=23% Similarity=0.338 Sum_probs=88.5
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC--ChhhHH
Q psy8428 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE--GSDVFQ 124 (328)
Q Consensus 47 ~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~--~~~lf~ 124 (328)
+|++||+++|++.+.+. +..++|.|+|+ ||++|+++.|+|+++|+.+. +.+.|+.+|+++ ++++++
T Consensus 1 ~v~~l~~~~~~~~i~~~--~~~~lv~f~a~----wC~~C~~~~~~~~~~a~~~~------~~~~~~~v~~~~~~~~~~~~ 68 (109)
T cd03002 1 PVYELTPKNFDKVVHNT--NYTTLVEFYAP----WCGHCKNLKPEYAKAAKELD------GLVQVAAVDCDEDKNKPLCG 68 (109)
T ss_pred CeEEcchhhHHHHHhcC--CCeEEEEEECC----CCHHHHhhChHHHHHHHHhc------CCceEEEEecCccccHHHHH
Confidence 47899999999998643 45699999999 99999999999999999885 468899999999 899999
Q ss_pred HcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHH
Q psy8428 125 MLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIA 166 (328)
Q Consensus 125 ~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~ 166 (328)
+++++++|++++|+++++........+ .|+.+.+++.+||.
T Consensus 69 ~~~i~~~Pt~~~~~~~~~~~~~~~~~~-~G~~~~~~l~~fi~ 109 (109)
T cd03002 69 KYGVQGFPTLKVFRPPKKASKHAVEDY-NGERSAKAIVDFVL 109 (109)
T ss_pred HcCCCcCCEEEEEeCCCcccccccccc-cCccCHHHHHHHhC
Confidence 999999999999998852111111222 47889999999973
No 14
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.71 E-value=8.5e-17 Score=127.06 Aligned_cols=102 Identities=16% Similarity=0.300 Sum_probs=85.7
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHc
Q psy8428 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (328)
Q Consensus 47 ~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l 126 (328)
++++||+++|++.+.++ .++|.|||+ ||++|+++.|+++++|+++.. .+.++.|+++|+++++++++++
T Consensus 1 ~~~~l~~~~f~~~~~~~----~~lv~f~a~----wC~~C~~~~p~~~~~~~~~~~---~~~~~~~~~vd~~~~~~~~~~~ 69 (102)
T cd03005 1 GVLELTEDNFDHHIAEG----NHFVKFFAP----WCGHCKRLAPTWEQLAKKFNN---ENPSVKIAKVDCTQHRELCSEF 69 (102)
T ss_pred CeeECCHHHHHHHhhcC----CEEEEEECC----CCHHHHHhCHHHHHHHHHHhc---cCCcEEEEEEECCCChhhHhhc
Confidence 47899999999998532 389999999 999999999999999999863 1236999999999999999999
Q ss_pred CCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHH
Q psy8428 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 127 ~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl 165 (328)
+++++||+++|++|. ......|..+.+++.+||
T Consensus 70 ~v~~~Pt~~~~~~g~------~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 70 QVRGYPTLLLFKDGE------KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CCCcCCEEEEEeCCC------eeeEeeCCCCHHHHHhhC
Confidence 999999999998762 122235778899998885
No 15
>PRK09381 trxA thioredoxin; Provisional
Probab=99.71 E-value=1.7e-16 Score=127.48 Aligned_cols=107 Identities=11% Similarity=0.221 Sum_probs=91.6
Q ss_pred CCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHH
Q psy8428 45 KKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQ 124 (328)
Q Consensus 45 ~~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~ 124 (328)
+++|+++++++|++.+.+. +..+++.||++ ||++|+.+.|.++++++.+. +++.|+.+|+++++++++
T Consensus 2 ~~~v~~~~~~~~~~~v~~~--~~~vvv~f~~~----~C~~C~~~~p~~~~l~~~~~------~~~~~~~vd~~~~~~~~~ 69 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKA--DGAILVDFWAE----WCGPCKMIAPILDEIADEYQ------GKLTVAKLNIDQNPGTAP 69 (109)
T ss_pred CCcceeeChhhHHHHHhcC--CCeEEEEEECC----CCHHHHHHhHHHHHHHHHhC------CCcEEEEEECCCChhHHH
Confidence 4679999999999887643 55799999999 99999999999999999985 469999999999999999
Q ss_pred HcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhc
Q psy8428 125 MLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (328)
Q Consensus 125 ~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t 169 (328)
+++++++|++++|++| + ......|..+.+++.+|+.+++
T Consensus 70 ~~~v~~~Pt~~~~~~G-~-----~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 70 KYGIRGIPTLLLFKNG-E-----VAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred hCCCCcCCEEEEEeCC-e-----EEEEecCCCCHHHHHHHHHHhc
Confidence 9999999999999876 2 2223346678999999998875
No 16
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.69 E-value=2.5e-16 Score=124.61 Aligned_cols=101 Identities=22% Similarity=0.257 Sum_probs=86.6
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcC
Q psy8428 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (328)
Q Consensus 48 VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~ 127 (328)
|+++++++|++.+.+. +..++++|+|+ ||++|+++.|.|+++|+.+. +++.|+.+|++++++++++++
T Consensus 2 v~~l~~~~~~~~i~~~--~~~vlv~f~a~----~C~~C~~~~~~~~~~~~~~~------~~~~~~~id~~~~~~~~~~~~ 69 (103)
T cd03001 2 VVELTDSNFDKKVLNS--DDVWLVEFYAP----WCGHCKNLAPEWKKAAKALK------GIVKVGAVDADVHQSLAQQYG 69 (103)
T ss_pred eEEcCHHhHHHHHhcC--CCcEEEEEECC----CCHHHHHHhHHHHHHHHHhc------CCceEEEEECcchHHHHHHCC
Confidence 7899999999988533 34689999999 99999999999999999885 469999999999999999999
Q ss_pred CCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHH
Q psy8428 128 LNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 128 v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl 165 (328)
++++|++++|+++.. ..+++ .|+.+.+++.+|+
T Consensus 70 i~~~P~~~~~~~~~~----~~~~~-~g~~~~~~l~~~~ 102 (103)
T cd03001 70 VRGFPTIKVFGAGKN----SPQDY-QGGRTAKAIVSAA 102 (103)
T ss_pred CCccCEEEEECCCCc----ceeec-CCCCCHHHHHHHh
Confidence 999999999998721 12233 4789999999997
No 17
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.67 E-value=3.8e-16 Score=126.02 Aligned_cols=105 Identities=17% Similarity=0.336 Sum_probs=86.5
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC-ChhhHH-
Q psy8428 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE-GSDVFQ- 124 (328)
Q Consensus 47 ~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~-~~~lf~- 124 (328)
.|++++.++|++++....++.+++|.|+|+ ||++|+++.|+|+++|+.+.. .++.|+++|++. +.++++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~----wC~~C~~~~~~~~~la~~~~~-----~~~~~~~vd~d~~~~~~~~~ 72 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAP----WCPFCQAMEASYEELAEKLAG-----SNVKVAKFNADGEQREFAKE 72 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECC----CCHHHHHHhHHHHHHHHHhcc-----CCeEEEEEECCccchhhHHh
Confidence 489999999999985445667899999999 999999999999999998862 359999999998 577776
Q ss_pred HcCCCcCceEEEecCCCCCCCCCceeeeec-ccCHHHHHHHH
Q psy8428 125 MLRLNTAPIFMHFPAKGKPKPSDTLDIQRV-GYSAEAIVKWI 165 (328)
Q Consensus 125 ~l~v~svP~l~~f~p~g~~~~~~~~~~~~~-~~~a~~l~~fl 165 (328)
.++++++||+++|+++++. .+.+ .+ .+++++|.+||
T Consensus 73 ~~~v~~~Pti~~f~~~~~~----~~~y-~g~~~~~~~l~~f~ 109 (109)
T cd02993 73 ELQLKSFPTILFFPKNSRQ----PIKY-PSEQRDVDSLLMFV 109 (109)
T ss_pred hcCCCcCCEEEEEcCCCCC----ceec-cCCCCCHHHHHhhC
Confidence 5999999999999987431 2333 24 47999999885
No 18
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.67 E-value=5.3e-16 Score=126.52 Aligned_cols=103 Identities=12% Similarity=0.175 Sum_probs=79.8
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEee--CCCCCCCc---cchhhHHHHHHHHHHcccccCCCCcEEEEEEECc---
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTA--LAPQRNCH---ICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD--- 117 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA--~~~~~~C~---~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~--- 117 (328)
.|+++||++||++.|. + +..++|.|+| | ||+ +|+++.|+|++.| +.+.+++||++
T Consensus 1 ~g~v~L~~~nF~~~v~-~--~~~vlV~F~A~~P----wc~k~~~~~~LA~e~~~aa----------~~v~lakVd~~d~~ 63 (116)
T cd03007 1 KGCVDLDTVTFYKVIP-K--FKYSLVKFDTAYP----YGEKHEAFTRLAESSASAT----------DDLLVAEVGIKDYG 63 (116)
T ss_pred CCeeECChhhHHHHHh-c--CCcEEEEEeCCCC----CCCChHHHHHHHHHHHhhc----------CceEEEEEeccccc
Confidence 3789999999999884 3 3459999999 7 888 5555555555443 24999999994
Q ss_pred --CChhhHHHcCCC--cCceEEEecCCCCCCCCCceeeeecc-cCHHHHHHHHHhhc
Q psy8428 118 --EGSDVFQMLRLN--TAPIFMHFPAKGKPKPSDTLDIQRVG-YSAEAIVKWIADRT 169 (328)
Q Consensus 118 --~~~~lf~~l~v~--svP~l~~f~p~g~~~~~~~~~~~~~~-~~a~~l~~fl~~~t 169 (328)
++.+++++|+|+ ++||+++|+.|+. .++..| .|+ +++++|++||++++
T Consensus 64 ~~~~~~L~~~y~I~~~gyPTl~lF~~g~~-~~~~~Y---~G~~r~~~~lv~~v~~~~ 116 (116)
T cd03007 64 EKLNMELGERYKLDKESYPVIYLFHGGDF-ENPVPY---SGADVTVDALQRFLKGNT 116 (116)
T ss_pred chhhHHHHHHhCCCcCCCCEEEEEeCCCc-CCCccC---CCCcccHHHHHHHHHhcC
Confidence 578999999999 9999999998631 112334 365 99999999999874
No 19
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.66 E-value=1.5e-15 Score=123.45 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=68.7
Q ss_pred hhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCc
Q psy8428 53 GQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAP 132 (328)
Q Consensus 53 ~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP 132 (328)
.++|++.+. ...+..++|.|+|+ ||+||+.+.|.++++|+.+. +.+.|+++|+|+++++.++++|+++|
T Consensus 2 ~~~~~~~i~-~~~~~~vVV~F~A~----WCgpCk~m~P~le~la~~~~------~~v~f~kVDvD~~~~la~~~~V~~iP 70 (114)
T cd02954 2 GWAVDQAIL-SEEEKVVVIRFGRD----WDPVCMQMDEVLAKIAEDVS------NFAVIYLVDIDEVPDFNKMYELYDPP 70 (114)
T ss_pred HHHHHHHHh-ccCCCEEEEEEECC----CChhHHHHHHHHHHHHHHcc------CceEEEEEECCCCHHHHHHcCCCCCC
Confidence 467888875 32355799999999 99999999999999999885 46899999999999999999999999
Q ss_pred eEEEecCC
Q psy8428 133 IFMHFPAK 140 (328)
Q Consensus 133 ~l~~f~p~ 140 (328)
|+++|+.|
T Consensus 71 Tf~~fk~G 78 (114)
T cd02954 71 TVMFFFRN 78 (114)
T ss_pred EEEEEECC
Confidence 99999987
No 20
>PRK10996 thioredoxin 2; Provisional
Probab=99.65 E-value=1.5e-15 Score=128.07 Aligned_cols=105 Identities=16% Similarity=0.324 Sum_probs=90.2
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
..++++++++|++.+. . +..++|.|||+ ||++|+++.|.|+++++.+. +++.|+++|.+++++++++
T Consensus 35 ~~~i~~~~~~~~~~i~-~--~k~vvv~F~a~----wC~~C~~~~~~l~~l~~~~~------~~v~~~~vd~~~~~~l~~~ 101 (139)
T PRK10996 35 GEVINATGETLDKLLQ-D--DLPVVIDFWAP----WCGPCRNFAPIFEDVAAERS------GKVRFVKVNTEAERELSAR 101 (139)
T ss_pred CCCEEcCHHHHHHHHh-C--CCeEEEEEECC----CCHHHHHHHHHHHHHHHHhC------CCeEEEEEeCCCCHHHHHh
Confidence 3488999999999863 3 56799999999 99999999999999998875 4699999999999999999
Q ss_pred cCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhc
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t 169 (328)
++|+++|++++|++| +..+...|..+.+++.+|+++.+
T Consensus 102 ~~V~~~Ptlii~~~G------~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 102 FRIRSIPTIMIFKNG------QVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred cCCCccCEEEEEECC------EEEEEEcCCCCHHHHHHHHHHhC
Confidence 999999999999865 23444457788999999998753
No 21
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.64 E-value=1.3e-15 Score=123.47 Aligned_cols=103 Identities=10% Similarity=0.150 Sum_probs=85.5
Q ss_pred EeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCC
Q psy8428 50 RFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLN 129 (328)
Q Consensus 50 ~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~ 129 (328)
.++.++|++.+.+...+-.++|.|||+ ||++|+.+.|+++++++.+.. .++.|+++|+++++++.+++||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~----wC~~C~~~~p~~~~l~~~~~~-----~~v~~~~vd~d~~~~l~~~~~V~ 78 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSD----WCFSCIHIEPVWKEVIQELEP-----LGVGIATVNAGHERRLARKLGAH 78 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECC----ccHhHHHhhHHHHHHHHHHHh-----cCceEEEEeccccHHHHHHcCCc
Confidence 467888987664333456899999999 999999999999999999852 35999999999999999999999
Q ss_pred cCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHh
Q psy8428 130 TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (328)
Q Consensus 130 svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~ 167 (328)
++||+++|+.| + ......|..+.+++.+||.+
T Consensus 79 ~~Pt~~i~~~g-~-----~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 79 SVPAIVGIING-Q-----VTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred cCCEEEEEECC-E-----EEEEecCCCCHHHHHHHHhc
Confidence 99999999865 1 23333466789999999975
No 22
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.64 E-value=1.5e-15 Score=120.15 Aligned_cols=104 Identities=21% Similarity=0.378 Sum_probs=86.9
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC-ChhhHHH
Q psy8428 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE-GSDVFQM 125 (328)
Q Consensus 47 ~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~-~~~lf~~ 125 (328)
+|+++|+++|++.+. .+ +..+++.|||+ ||++|+++.|.++.+++.+.. .+++.|+++|+++ +++++++
T Consensus 1 ~~~~l~~~~~~~~~~-~~-~~~~~v~f~a~----~C~~C~~~~~~~~~~~~~~~~----~~~~~~~~id~~~~~~~~~~~ 70 (105)
T cd02998 1 NVVELTDSNFDKVVG-DD-KKDVLVEFYAP----WCGHCKNLAPEYEKLAAVFAN----EDDVVIAKVDADEANKDLAKK 70 (105)
T ss_pred CeEEcchhcHHHHhc-CC-CCcEEEEEECC----CCHHHHhhChHHHHHHHHhCC----CCCEEEEEEECCCcchhhHHh
Confidence 468999999999874 33 34699999999 999999999999999998852 2469999999999 9999999
Q ss_pred cCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHH
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl 165 (328)
++++++|++++|+++++. ... ..|+.+.+++.+|+
T Consensus 71 ~~i~~~P~~~~~~~~~~~----~~~-~~g~~~~~~l~~~i 105 (105)
T cd02998 71 YGVSGFPTLKFFPKGSTE----PVK-YEGGRDLEDLVKFV 105 (105)
T ss_pred CCCCCcCEEEEEeCCCCC----ccc-cCCccCHHHHHhhC
Confidence 999999999999987421 122 24778999999885
No 23
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.64 E-value=2.1e-15 Score=121.93 Aligned_cols=101 Identities=7% Similarity=0.107 Sum_probs=84.3
Q ss_pred hhCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCC--CccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCCh
Q psy8428 43 NAKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRN--CHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS 120 (328)
Q Consensus 43 ~~~~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~--C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~ 120 (328)
+..-+.-++|.+||++.+. . +-.++++|+|+ | |++|++++|.++++|+.|. +.+.|+++|+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-~--~~~~v~~f~~~----~~~cp~c~~i~P~leela~e~~------~~v~f~kVdid~~~ 73 (111)
T cd02965 7 QTRHGWPRVDAATLDDWLA-A--GGDLVLLLAGD----PVRFPEVLDVAVVLPELLKAFP------GRFRAAVVGRADEQ 73 (111)
T ss_pred HHhcCCcccccccHHHHHh-C--CCCEEEEecCC----cccCcchhhhHhHHHHHHHHCC------CcEEEEEEECCCCH
Confidence 4456678999999999873 3 45689999999 8 9999999999999999985 56999999999999
Q ss_pred hhHHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHH
Q psy8428 121 DVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIV 162 (328)
Q Consensus 121 ~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~ 162 (328)
++..+|+|+++||+++|+.| ...+...|..+.+++.
T Consensus 74 ~la~~f~V~sIPTli~fkdG------k~v~~~~G~~~~~e~~ 109 (111)
T cd02965 74 ALAARFGVLRTPALLFFRDG------RYVGVLAGIRDWDEYV 109 (111)
T ss_pred HHHHHcCCCcCCEEEEEECC------EEEEEEeCccCHHHHh
Confidence 99999999999999999987 2344445666666553
No 24
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.64 E-value=2.1e-15 Score=118.16 Aligned_cols=96 Identities=14% Similarity=0.200 Sum_probs=80.8
Q ss_pred hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCce
Q psy8428 54 QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPI 133 (328)
Q Consensus 54 ~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~ 133 (328)
++|++.+. .+++..++|.|||+ ||++|+.+.|.++++++.+. +.+.|+++|++++++++++|+++++|+
T Consensus 1 ~~f~~~i~-~~~~~~vlv~f~a~----wC~~C~~~~~~~~~~~~~~~------~~~~~~~vd~~~~~~l~~~~~i~~~Pt 69 (96)
T cd02956 1 QNFQQVLQ-ESTQVPVVVDFWAP----RSPPSKELLPLLERLAEEYQ------GQFVLAKVNCDAQPQIAQQFGVQALPT 69 (96)
T ss_pred CChHHHHH-hcCCCeEEEEEECC----CChHHHHHHHHHHHHHHHhC------CcEEEEEEeccCCHHHHHHcCCCCCCE
Confidence 46888875 34566899999999 99999999999999999885 469999999999999999999999999
Q ss_pred EEEecCCCCCCCCCceeeeecccCHHHHHHHHH
Q psy8428 134 FMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIA 166 (328)
Q Consensus 134 l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~ 166 (328)
+++|+.| + ..+...|..+.+++.+||+
T Consensus 70 ~~~~~~g-~-----~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 70 VYLFAAG-Q-----PVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred EEEEeCC-E-----EeeeecCCCCHHHHHHHhC
Confidence 9999865 2 2233346778999999873
No 25
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.63 E-value=2.3e-15 Score=118.38 Aligned_cols=102 Identities=22% Similarity=0.393 Sum_probs=86.6
Q ss_pred eChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCc
Q psy8428 51 FDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNT 130 (328)
Q Consensus 51 L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~s 130 (328)
||+++|++.+. ++..++++||++ ||++|+.+.|.++++|+.+.. .+++.|+.+|++++++++++|++++
T Consensus 1 l~~~~~~~~~~---~~~~~~i~f~~~----~C~~c~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~i~~ 69 (102)
T TIGR01126 1 LTASNFDDIVL---SNKDVLVEFYAP----WCGHCKNLAPEYEKLAKELKG----DPDIVLAKVDATAEKDLASRFGVSG 69 (102)
T ss_pred CchhhHHHHhc---cCCcEEEEEECC----CCHHHHhhChHHHHHHHHhcc----CCceEEEEEEccchHHHHHhCCCCc
Confidence 67899999874 356799999999 999999999999999998853 1269999999999999999999999
Q ss_pred CceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhc
Q psy8428 131 APIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (328)
Q Consensus 131 vP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t 169 (328)
+|++++|++++. .+.+ .|..+.++|.+|+.+++
T Consensus 70 ~P~~~~~~~~~~-----~~~~-~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 70 FPTIKFFPKGKK-----PVDY-EGGRDLEAIVEFVNEKS 102 (102)
T ss_pred CCEEEEecCCCc-----ceee-cCCCCHHHHHHHHHhcC
Confidence 999999998742 1222 46788999999998763
No 26
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.62 E-value=4.3e-15 Score=117.53 Aligned_cols=102 Identities=21% Similarity=0.362 Sum_probs=85.3
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC--ChhhHH
Q psy8428 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE--GSDVFQ 124 (328)
Q Consensus 47 ~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~--~~~lf~ 124 (328)
.++++++++|++.+. .++ .++|.|||+ ||++|+.+.|.++++++.+.. .+.+.|+++|+++ ++++++
T Consensus 1 ~~~~l~~~~~~~~~~-~~~--~~~v~f~a~----wC~~C~~~~~~~~~~~~~~~~----~~~~~~~~id~~~~~~~~~~~ 69 (104)
T cd02997 1 DVVHLTDEDFRKFLK-KEK--HVLVMFYAP----WCGHCKKMKPEFTKAATELKE----DGKGVLAAVDCTKPEHDALKE 69 (104)
T ss_pred CeEEechHhHHHHHh-hCC--CEEEEEECC----CCHHHHHhCHHHHHHHHHHhh----CCceEEEEEECCCCccHHHHH
Confidence 378999999999875 333 789999999 999999999999999988753 2458999999999 999999
Q ss_pred HcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHH
Q psy8428 125 MLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 125 ~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl 165 (328)
+++++++|++++|++| +. .....|..+++++.+|+
T Consensus 70 ~~~i~~~Pt~~~~~~g-~~-----~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 70 EYNVKGFPTFKYFENG-KF-----VEKYEGERTAEDIIEFM 104 (104)
T ss_pred hCCCccccEEEEEeCC-Ce-----eEEeCCCCCHHHHHhhC
Confidence 9999999999999876 21 22334778899999885
No 27
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.62 E-value=5.8e-15 Score=119.92 Aligned_cols=83 Identities=11% Similarity=0.249 Sum_probs=74.7
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
..+.++++++|++.+.+.+.+..++|.|||+ ||++|+.+.|.++++|+.+. ++.|+++|++++ ++.++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~----~c~~C~~l~~~l~~la~~~~-------~v~f~~vd~~~~-~l~~~ 71 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEP----GFPRCKILDSHLEELAAKYP-------ETKFVKINAEKA-FLVNY 71 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCC----CCCcHHHHHHHHHHHHHHCC-------CcEEEEEEchhh-HHHHh
Confidence 3588999999999986544457899999999 99999999999999999874 488999999999 99999
Q ss_pred cCCCcCceEEEecCC
Q psy8428 126 LRLNTAPIFMHFPAK 140 (328)
Q Consensus 126 l~v~svP~l~~f~p~ 140 (328)
++|+++||+++|+.|
T Consensus 72 ~~i~~~Pt~~~f~~G 86 (113)
T cd02957 72 LDIKVLPTLLVYKNG 86 (113)
T ss_pred cCCCcCCEEEEEECC
Confidence 999999999999987
No 28
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.61 E-value=5.1e-15 Score=116.98 Aligned_cols=104 Identities=20% Similarity=0.357 Sum_probs=85.1
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHc
Q psy8428 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (328)
Q Consensus 47 ~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l 126 (328)
+|.+|++++|++.+.+. +..++|+|+|+ ||++|+.+.|+++++|+.+.. ..++.|+++|++++ ++...+
T Consensus 1 ~v~~l~~~~f~~~i~~~--~~~~~v~f~~~----~C~~C~~~~~~~~~~~~~~~~----~~~~~~~~id~~~~-~~~~~~ 69 (104)
T cd02995 1 PVKVVVGKNFDEVVLDS--DKDVLVEFYAP----WCGHCKALAPIYEELAEKLKG----DDNVVIAKMDATAN-DVPSEF 69 (104)
T ss_pred CeEEEchhhhHHHHhCC--CCcEEEEEECC----CCHHHHHHhhHHHHHHHHhcC----CCCEEEEEEeCcch-hhhhhc
Confidence 47899999999987533 35799999999 999999999999999998752 13699999999987 578899
Q ss_pred CCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHH
Q psy8428 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 127 ~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl 165 (328)
+++++|++++|++|++. .... ..|..+.+++.+||
T Consensus 70 ~~~~~Pt~~~~~~~~~~---~~~~-~~g~~~~~~l~~fi 104 (104)
T cd02995 70 VVDGFPTILFFPAGDKS---NPIK-YEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCCCEEEEEcCCCcC---CceE-ccCCcCHHHHHhhC
Confidence 99999999999987421 1122 24778899999885
No 29
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.61 E-value=1e-14 Score=124.80 Aligned_cols=85 Identities=18% Similarity=0.276 Sum_probs=75.9
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
+.+.++++++|++.+. ..++..++|.|||+ ||++|+++.|.++++|+.+.. +++.|+++|+++++++.++
T Consensus 28 ~~v~~l~~~~f~~~l~-~~~~~~vvV~Fya~----wC~~Ck~l~p~l~~la~~~~~-----~~v~f~~VDvd~~~~la~~ 97 (152)
T cd02962 28 EHIKYFTPKTLEEELE-RDKRVTWLVEFFTT----WSPECVNFAPVFAELSLKYNN-----NNLKFGKIDIGRFPNVAEK 97 (152)
T ss_pred CccEEcCHHHHHHHHH-hcCCCEEEEEEECC----CCHHHHHHHHHHHHHHHHccc-----CCeEEEEEECCCCHHHHHH
Confidence 5688999999999874 33456799999999 999999999999999998852 3599999999999999999
Q ss_pred cCCCc------CceEEEecCC
Q psy8428 126 LRLNT------APIFMHFPAK 140 (328)
Q Consensus 126 l~v~s------vP~l~~f~p~ 140 (328)
++|++ +||+++|+.|
T Consensus 98 ~~V~~~~~v~~~PT~ilf~~G 118 (152)
T cd02962 98 FRVSTSPLSKQLPTIILFQGG 118 (152)
T ss_pred cCceecCCcCCCCEEEEEECC
Confidence 99998 9999999976
No 30
>KOG0190|consensus
Probab=99.61 E-value=2.4e-15 Score=148.57 Aligned_cols=114 Identities=24% Similarity=0.341 Sum_probs=98.8
Q ss_pred hCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhH
Q psy8428 44 AKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVF 123 (328)
Q Consensus 44 ~~~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf 123 (328)
.++.|.+||.+||++.+. + +-.++|.|||| ||++|+.+.|+|++.|...... +..+..++||++++.+++
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~-~--~~~vlVeFYAP----WCghck~LaPey~kAA~~Lke~---~s~i~LakVDat~~~~~~ 92 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETIN-G--HEFVLVEFYAP----WCGHCKALAPEYEKAATELKEE---GSPVKLAKVDATEESDLA 92 (493)
T ss_pred cccceEEEecccHHHHhc-c--CceEEEEEEch----hhhhhhhhCcHHHHHHHHhhcc---CCCceeEEeecchhhhhH
Confidence 456799999999999984 4 44689999999 9999999999999999988642 346999999999999999
Q ss_pred HHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCcc
Q psy8428 124 QMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI 173 (328)
Q Consensus 124 ~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~i 173 (328)
.+|+|+++||+.+|..|.. ...| .|+++++.+++|+.+++|...
T Consensus 93 ~~y~v~gyPTlkiFrnG~~---~~~Y---~G~r~adgIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 93 SKYEVRGYPTLKIFRNGRS---AQDY---NGPREADGIVKWLKKQSGPAS 136 (493)
T ss_pred hhhcCCCCCeEEEEecCCc---ceec---cCcccHHHHHHHHHhccCCCc
Confidence 9999999999999999832 2334 489999999999999999664
No 31
>PHA02278 thioredoxin-like protein
Probab=99.60 E-value=8.7e-15 Score=117.33 Aligned_cols=92 Identities=13% Similarity=0.213 Sum_probs=75.5
Q ss_pred hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC----hhhHHHcCCC
Q psy8428 54 QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG----SDVFQMLRLN 129 (328)
Q Consensus 54 ~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~----~~lf~~l~v~ 129 (328)
++|++.+. . +-.++|+|||+ ||+||+.+.|.++++|+.+. .++.|.++|++++ +++.++++|+
T Consensus 5 ~~~~~~i~-~--~~~vvV~F~A~----WCgpCk~m~p~l~~l~~~~~------~~~~~~~vdvd~~~~d~~~l~~~~~I~ 71 (103)
T PHA02278 5 VDLNTAIR-Q--KKDVIVMITQD----NCGKCEILKSVIPMFQESGD------IKKPILTLNLDAEDVDREKAVKLFDIM 71 (103)
T ss_pred HHHHHHHh-C--CCcEEEEEECC----CCHHHHhHHHHHHHHHhhhc------CCceEEEEECCccccccHHHHHHCCCc
Confidence 57888873 3 45799999999 99999999999999998753 3467899999975 7899999999
Q ss_pred cCceEEEecCCCCCCCCCceeeeecccCHHHHHHH
Q psy8428 130 TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKW 164 (328)
Q Consensus 130 svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~f 164 (328)
++||+++|+.| +..+...|..+.+++.+|
T Consensus 72 ~iPT~i~fk~G------~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 72 STPVLIGYKDG------QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred cccEEEEEECC------EEEEEEeCCCCHHHHHhh
Confidence 99999999987 344554566778887775
No 32
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.59 E-value=6.7e-15 Score=114.42 Aligned_cols=101 Identities=21% Similarity=0.344 Sum_probs=84.0
Q ss_pred EEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCC
Q psy8428 49 LRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRL 128 (328)
Q Consensus 49 I~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v 128 (328)
++||+++|++.+. +++ +++|+||++ ||++|+.+.|.++++|+.+.. .+++.|+.+|+++++++++++++
T Consensus 1 ~~l~~~~~~~~i~-~~~--~~~v~f~~~----~C~~C~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~i 69 (101)
T cd02961 1 VELTDDNFDELVK-DSK--DVLVEFYAP----WCGHCKALAPEYEKLAKELKG----DGKVVVAKVDCTANNDLCSEYGV 69 (101)
T ss_pred CcccHHHHHHHHh-CCC--cEEEEEECC----CCHHHHhhhHHHHHHHHHhcc----CCceEEEEeeccchHHHHHhCCC
Confidence 4789999999985 433 799999999 999999999999999998841 25799999999999999999999
Q ss_pred CcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHH
Q psy8428 129 NTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 129 ~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl 165 (328)
+++|++++|++++. ......++.+++++.+|+
T Consensus 70 ~~~Pt~~~~~~~~~-----~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 70 RGYPTIKLFPNGSK-----EPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCCCEEEEEcCCCc-----ccccCCCCcCHHHHHhhC
Confidence 99999999998741 112224667889998885
No 33
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.59 E-value=7.8e-15 Score=116.83 Aligned_cols=92 Identities=10% Similarity=0.133 Sum_probs=76.9
Q ss_pred hHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECc-CChhhHHHcCCCcCce
Q psy8428 55 KYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD-EGSDVFQMLRLNTAPI 133 (328)
Q Consensus 55 nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~-~~~~lf~~l~v~svP~ 133 (328)
++.+++. ..++..++|.|||+ ||++|+.+.|+|+++|+.+. ++.|+++|.+ ++++++++++++++||
T Consensus 8 ~~~~~~~-~~~g~~vlV~F~a~----WC~~C~~~~p~l~~la~~~~-------~~~~~~vd~~~~~~~l~~~~~V~~~PT 75 (100)
T cd02999 8 IALDLMA-FNREDYTAVLFYAS----WCPFSASFRPHFNALSSMFP-------QIRHLAIEESSIKPSLLSRYGVVGFPT 75 (100)
T ss_pred HHHHHHH-hcCCCEEEEEEECC----CCHHHHhHhHHHHHHHHHhc-------cCceEEEECCCCCHHHHHhcCCeecCE
Confidence 4556654 45677899999999 99999999999999999874 3788999999 7999999999999999
Q ss_pred EEEecCCCCCCCCCceeeeecccCHHHHHHHH
Q psy8428 134 FMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 134 l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl 165 (328)
+++|++| .. ....|.++.+++.+|+
T Consensus 76 ~~lf~~g-~~------~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 76 ILLFNST-PR------VRYNGTRTLDSLAAFY 100 (100)
T ss_pred EEEEcCC-ce------eEecCCCCHHHHHhhC
Confidence 9999876 21 2235778999999885
No 34
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.58 E-value=3.4e-14 Score=124.45 Aligned_cols=123 Identities=9% Similarity=0.153 Sum_probs=92.2
Q ss_pred HHHHHHHhhhhC----CCeEEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCc
Q psy8428 34 DRVLHLSEMNAK----KAVLRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNK 108 (328)
Q Consensus 34 ~~~~~L~~l~~~----~~VI~L~~-~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~ 108 (328)
+|+++|.+...+ ..++++++ ++|.+.+.+.+.+..++|.|||+ ||++|+.+.|.++++|+.+. .
T Consensus 46 ~R~~el~~~~~~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~----wc~~Ck~m~~~l~~LA~~~~-------~ 114 (175)
T cd02987 46 QRMQEMHAKLPFGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEP----GIPGCAALNSSLLCLAAEYP-------A 114 (175)
T ss_pred HHHHHHHHhccccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECC----CCchHHHHHHHHHHHHHHCC-------C
Confidence 455555543222 34999999 99999986544456899999999 99999999999999999873 5
Q ss_pred EEEEEEECcCChhhHHHcCCCcCceEEEecCCCCCCCCCce-eeeecccCHHHHHHHHHhh
Q psy8428 109 LFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTL-DIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 109 v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~-~~~~~~~~a~~l~~fl~~~ 168 (328)
+.|+++|++++ ++.++|+++++||+++|+.|.....-... +.....+++++|..+|.+.
T Consensus 115 vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 115 VKFCKIRASAT-GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred eEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 99999999998 99999999999999999987211000000 0111246789999888764
No 35
>PLN02309 5'-adenylylsulfate reductase
Probab=99.58 E-value=1.3e-14 Score=143.84 Aligned_cols=113 Identities=13% Similarity=0.246 Sum_probs=93.7
Q ss_pred hhCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECc-CChh
Q psy8428 43 NAKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD-EGSD 121 (328)
Q Consensus 43 ~~~~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~-~~~~ 121 (328)
-++..|++|+++||++++...+++..++|+|||+ ||++|+.++|+|+++|+.+.. .++.|+++|++ ++.+
T Consensus 342 ~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyAp----WC~~Cq~m~p~~e~LA~~~~~-----~~V~f~kVD~d~~~~~ 412 (457)
T PLN02309 342 FNSQNVVALSRAGIENLLKLENRKEPWLVVLYAP----WCPFCQAMEASYEELAEKLAG-----SGVKVAKFRADGDQKE 412 (457)
T ss_pred cCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECC----CChHHHHHHHHHHHHHHHhcc-----CCeEEEEEECCCcchH
Confidence 3456799999999999985455677899999999 999999999999999999852 35999999999 7788
Q ss_pred hHH-HcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhh
Q psy8428 122 VFQ-MLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 122 lf~-~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
+++ +++|+++||+++|+++.+ ....+..+.++++.|.+|+++.
T Consensus 413 la~~~~~I~~~PTil~f~~g~~----~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 413 FAKQELQLGSFPTILLFPKNSS----RPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred HHHhhCCCceeeEEEEEeCCCC----CeeecCCCCcCHHHHHHHHHHh
Confidence 886 699999999999998732 1223323568999999999864
No 36
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.57 E-value=2.8e-14 Score=116.33 Aligned_cols=87 Identities=16% Similarity=0.241 Sum_probs=75.0
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC--ChhhH
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE--GSDVF 123 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~--~~~lf 123 (328)
++++++++++|++.+.++ + .+++|.|||+ ||++|+.+.|.|+++|+.+... .+.+.|+++|++. +++++
T Consensus 1 ~~v~~l~~~~f~~~i~~~-~-~~vvV~f~a~----wC~~C~~~~~~~~~la~~~~~~---~~~v~~~~vd~~~~~~~~~~ 71 (114)
T cd02992 1 DPVIVLDAASFNSALLGS-P-SAWLVEFYAS----WCGHCRAFAPTWKKLARDLRKW---RPVVRVAAVDCADEENVALC 71 (114)
T ss_pred CCeEECCHHhHHHHHhcC-C-CeEEEEEECC----CCHHHHHHhHHHHHHHHHHHhc---CCceEEEEEeccchhhHHHH
Confidence 468999999999998643 3 5799999999 9999999999999999987521 2459999999864 78999
Q ss_pred HHcCCCcCceEEEecCCC
Q psy8428 124 QMLRLNTAPIFMHFPAKG 141 (328)
Q Consensus 124 ~~l~v~svP~l~~f~p~g 141 (328)
++++++++|++++|+++.
T Consensus 72 ~~~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 72 RDFGVTGYPTLRYFPPFS 89 (114)
T ss_pred HhCCCCCCCEEEEECCCC
Confidence 999999999999999874
No 37
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.57 E-value=3.4e-14 Score=111.19 Aligned_cols=101 Identities=19% Similarity=0.313 Sum_probs=83.9
Q ss_pred eChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCc
Q psy8428 51 FDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNT 130 (328)
Q Consensus 51 L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~s 130 (328)
+|+++|++.+.+. +-.+++.||++ ||++|+.+.|.++++++.+. +++.|+++|+++++++.++|++++
T Consensus 1 i~~~~~~~~~~~~--~~~vvi~f~~~----~C~~C~~~~~~l~~~~~~~~------~~~~~~~vd~~~~~~~~~~~~v~~ 68 (101)
T TIGR01068 1 LTDANFDETIASS--DKPVLVDFWAP----WCGPCKMIAPILEELAKEYE------GKVKFVKLNVDENPDIAAKYGIRS 68 (101)
T ss_pred CCHHHHHHHHhhc--CCcEEEEEECC----CCHHHHHhCHHHHHHHHHhc------CCeEEEEEECCCCHHHHHHcCCCc
Confidence 4678899987532 44689999999 99999999999999998885 469999999999999999999999
Q ss_pred CceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhc
Q psy8428 131 APIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (328)
Q Consensus 131 vP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t 169 (328)
+|++++|+.| + ......|..+.+++.+|+++.+
T Consensus 69 ~P~~~~~~~g-~-----~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 69 IPTLLLFKNG-K-----EVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred CCEEEEEeCC-c-----EeeeecCCCCHHHHHHHHHhhC
Confidence 9999999765 2 1222235678899999998763
No 38
>PTZ00102 disulphide isomerase; Provisional
Probab=99.56 E-value=4.3e-14 Score=141.20 Aligned_cols=112 Identities=21% Similarity=0.333 Sum_probs=95.7
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
+.++.|++++|++.+. .+ ..++|.|||+ ||++|+++.|+|+++|+.+... ..++.|+++|++++++++++
T Consensus 32 ~~v~~l~~~~f~~~i~-~~--~~~lv~f~a~----wC~~Ck~~~p~~~~~a~~~~~~---~~~i~~~~vd~~~~~~l~~~ 101 (477)
T PTZ00102 32 EHVTVLTDSTFDKFIT-EN--EIVLVKFYAP----WCGHCKRLAPEYKKAAKMLKEK---KSEIVLASVDATEEMELAQE 101 (477)
T ss_pred CCcEEcchhhHHHHHh-cC--CcEEEEEECC----CCHHHHHhhHHHHHHHHHHHhc---CCcEEEEEEECCCCHHHHHh
Confidence 5699999999999875 32 3699999999 9999999999999999887531 24699999999999999999
Q ss_pred cCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCcce
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQIR 174 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~i~ 174 (328)
++++++|++++|.+|+. .. ..|+++++++.+|+.+.++..+.
T Consensus 102 ~~i~~~Pt~~~~~~g~~------~~-y~g~~~~~~l~~~l~~~~~~~~~ 143 (477)
T PTZ00102 102 FGVRGYPTIKFFNKGNP------VN-YSGGRTADGIVSWIKKLTGPAVT 143 (477)
T ss_pred cCCCcccEEEEEECCce------EE-ecCCCCHHHHHHHHHHhhCCCce
Confidence 99999999999998731 22 24789999999999999987754
No 39
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.56 E-value=4.3e-14 Score=112.97 Aligned_cols=97 Identities=12% Similarity=0.242 Sum_probs=78.4
Q ss_pred ChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCCh---hhHHHcCC
Q psy8428 52 DGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS---DVFQMLRL 128 (328)
Q Consensus 52 ~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~---~lf~~l~v 128 (328)
+.++|++.+. ..++-.++|.|||+ ||++|+.+.|.++++|+.+. ++.|+++|.++++ +++++++|
T Consensus 2 ~~~~~~~~i~-~~~~k~vvv~F~a~----wC~~C~~~~p~l~~la~~~~-------~v~~~~vd~d~~~~~~~l~~~~~V 69 (103)
T cd02985 2 SVEELDEALK-KAKGRLVVLEFALK----HSGPSVKIYPTMVKLSRTCN-------DVVFLLVNGDENDSTMELCRREKI 69 (103)
T ss_pred CHHHHHHHHH-HcCCCEEEEEEECC----CCHhHHHHhHHHHHHHHHCC-------CCEEEEEECCCChHHHHHHHHcCC
Confidence 4678889885 34566899999999 99999999999999999882 5899999999874 89999999
Q ss_pred CcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHh
Q psy8428 129 NTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (328)
Q Consensus 129 ~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~ 167 (328)
+++||+++|++| + ..+.. .|...+++.+-+..
T Consensus 70 ~~~Pt~~~~~~G-~-----~v~~~-~G~~~~~l~~~~~~ 101 (103)
T cd02985 70 IEVPHFLFYKDG-E-----KIHEE-EGIGPDELIGDVLY 101 (103)
T ss_pred CcCCEEEEEeCC-e-----EEEEE-eCCCHHHHHHHHHh
Confidence 999999999876 1 22322 35667777776654
No 40
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.55 E-value=2.9e-14 Score=141.37 Aligned_cols=111 Identities=14% Similarity=0.230 Sum_probs=90.0
Q ss_pred hCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCCh-hh
Q psy8428 44 AKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS-DV 122 (328)
Q Consensus 44 ~~~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~-~l 122 (328)
.++.|++||++||++.+....++..++|.|||+ ||++|+.+.|+|+++|+.+.. ..+.|+++|+|.++ ++
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyAp----WC~~Ck~m~P~~eelA~~~~~-----~~v~~~kVdvD~~~~~~ 419 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAP----WCPFCQAMEASYLELAEKLAG-----SGVKVAKFRADGDQKEF 419 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECC----CChHHHHHHHHHHHHHHHhcc-----CCcEEEEEECCCCccHH
Confidence 445799999999999984345677899999999 999999999999999999852 24899999999764 34
Q ss_pred -HHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHh
Q psy8428 123 -FQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (328)
Q Consensus 123 -f~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~ 167 (328)
.++++|+++||+++|+++.. ....| ..+.++++.|..||+.
T Consensus 420 ~~~~~~I~~~PTii~Fk~g~~--~~~~Y--~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 420 AKQELQLGSFPTILFFPKHSS--RPIKY--PSEKRDVDSLMSFVNL 461 (463)
T ss_pred HHHHcCCCccceEEEEECCCC--CceeC--CCCCCCHHHHHHHHHh
Confidence 47899999999999998732 11223 2356999999999975
No 41
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.55 E-value=5.5e-14 Score=112.11 Aligned_cols=96 Identities=17% Similarity=0.304 Sum_probs=79.4
Q ss_pred ChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcC
Q psy8428 52 DGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTA 131 (328)
Q Consensus 52 ~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~sv 131 (328)
|.++|++.+. + +..++|.|||+ ||++|+.+.|+++++++.+. ++.+.|+++|.| ++++.++|+++++
T Consensus 6 ~~~~~~~~i~-~--~~~vvv~F~a~----wC~~Ck~~~p~l~~~~~~~~-----~~~~~~~~vd~d-~~~~~~~~~v~~~ 72 (102)
T cd02948 6 NQEEWEELLS-N--KGLTVVDVYQE----WCGPCKAVVSLFKKIKNELG-----DDLLHFATAEAD-TIDTLKRYRGKCE 72 (102)
T ss_pred CHHHHHHHHc-c--CCeEEEEEECC----cCHhHHHHhHHHHHHHHHcC-----CCcEEEEEEeCC-CHHHHHHcCCCcC
Confidence 6789999863 3 45799999999 99999999999999999885 135889999999 8889999999999
Q ss_pred ceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHh
Q psy8428 132 PIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (328)
Q Consensus 132 P~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~ 167 (328)
|++++|++| +..+.. .|.+++.+.++|.+
T Consensus 73 Pt~~~~~~g------~~~~~~-~G~~~~~~~~~i~~ 101 (102)
T cd02948 73 PTFLFYKNG------ELVAVI-RGANAPLLNKTITE 101 (102)
T ss_pred cEEEEEECC------EEEEEE-ecCChHHHHHHHhh
Confidence 999999876 233443 34688999998865
No 42
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.55 E-value=5.7e-14 Score=118.49 Aligned_cols=114 Identities=19% Similarity=0.199 Sum_probs=85.9
Q ss_pred hhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCc
Q psy8428 53 GQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAP 132 (328)
Q Consensus 53 ~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP 132 (328)
.+.|++.+.+ ..+..++|.|+|+ ||+||+.+.|.++++|+.+. +.+.|+++|+|+++++.++|+|++.|
T Consensus 11 ~~e~d~~I~~-~~~~lVVvdF~A~----WCgpCk~m~p~l~~la~~~~------~~~~~~kVDVDe~~dla~~y~I~~~~ 79 (142)
T PLN00410 11 GWAVDQAILA-EEERLVVIRFGHD----WDETCMQMDEVLASVAETIK------NFAVIYLVDITEVPDFNTMYELYDPC 79 (142)
T ss_pred HHHHHHHHHh-cCCCEEEEEEECC----CChhHHHHHHHHHHHHHHcC------CceEEEEEECCCCHHHHHHcCccCCC
Confidence 4688888752 3466799999999 99999999999999999985 56999999999999999999999887
Q ss_pred eEE-EecCCCCCCCCCceeeeec--------ccCHHHHHHHHHhhcC----CcceeeCCCCCc
Q psy8428 133 IFM-HFPAKGKPKPSDTLDIQRV--------GYSAEAIVKWIADRTD----IQIRVFRPPNYS 182 (328)
Q Consensus 133 ~l~-~f~p~g~~~~~~~~~~~~~--------~~~a~~l~~fl~~~t~----~~i~i~~p~~~~ 182 (328)
+++ +|+.|. ...+...| ..+.++|.+-++.... -.--+..|.||+
T Consensus 80 t~~~ffk~g~-----~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~~~~~~~~~~ 137 (142)
T PLN00410 80 TVMFFFRNKH-----IMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVISPKDYS 137 (142)
T ss_pred cEEEEEECCe-----EEEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCeEEECCCccc
Confidence 777 888762 13444434 3567777777765332 112244577775
No 43
>KOG0907|consensus
Probab=99.53 E-value=8.6e-14 Score=112.04 Aligned_cols=85 Identities=24% Similarity=0.418 Sum_probs=71.4
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecCCCCCCC
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKP 145 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~ 145 (328)
+-.++|+|||+ ||+||+.++|.|+++|+.|. ++.|.++|+|++++++++++++++||+.+|++|
T Consensus 21 ~kliVvdF~a~----wCgPCk~i~P~~~~La~~y~-------~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g----- 84 (106)
T KOG0907|consen 21 DKLVVVDFYAT----WCGPCKAIAPKFEKLAEKYP-------DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGG----- 84 (106)
T ss_pred CCeEEEEEECC----CCcchhhhhhHHHHHHHHCC-------CCEEEEEecccCHhHHHhcCceEeeEEEEEECC-----
Confidence 56789999999 99999999999999999995 399999999999999999999999999999887
Q ss_pred CCceeeeecccCHHHHHHHHHhh
Q psy8428 146 SDTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
++.+. .-|.+.+++.+.+++.
T Consensus 85 -~~~~~-~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 85 -EEVDE-VVGANKAELEKKIAKH 105 (106)
T ss_pred -EEEEE-EecCCHHHHHHHHHhc
Confidence 22332 2355666777776543
No 44
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.53 E-value=1.3e-13 Score=112.35 Aligned_cols=105 Identities=14% Similarity=0.208 Sum_probs=82.4
Q ss_pred CeEEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 47 AVLRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 47 ~VI~L~~-~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
.+.++++ ++|++.+. .+ -.++|.||++ ||++|+.+.|.++++|+.+. ++.|+++|.++++++.++
T Consensus 5 ~v~~i~~~~~~~~~i~-~~--~~vvV~f~a~----~c~~C~~~~p~l~~la~~~~-------~i~f~~Vd~~~~~~l~~~ 70 (113)
T cd02989 5 KYREVSDEKEFFEIVK-SS--ERVVCHFYHP----EFFRCKIMDKHLEILAKKHL-------ETKFIKVNAEKAPFLVEK 70 (113)
T ss_pred CeEEeCCHHHHHHHHh-CC--CcEEEEEECC----CCccHHHHHHHHHHHHHHcC-------CCEEEEEEcccCHHHHHH
Confidence 4788888 89999885 32 3699999999 99999999999999999873 489999999999999999
Q ss_pred cCCCcCceEEEecCCCCCCCC-Cceeeee-cccCHHHHHHHH
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPS-DTLDIQR-VGYSAEAIVKWI 165 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~-~~~~~~~-~~~~a~~l~~fl 165 (328)
++++++||+++|+.|...... ...++.. +..+++++.+||
T Consensus 71 ~~v~~vPt~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 71 LNIKVLPTVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred CCCccCCEEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 999999999999987211000 0111111 245688888887
No 45
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.51 E-value=2e-13 Score=110.52 Aligned_cols=103 Identities=15% Similarity=0.158 Sum_probs=78.2
Q ss_pred hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCce
Q psy8428 54 QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPI 133 (328)
Q Consensus 54 ~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~ 133 (328)
+.|++.+.+. .+..++|.|+|+ ||+||+.+.|.++++|+.+. +.+.|.+||+|+.+++.++|+|++.||
T Consensus 3 ~~~d~~i~~~-~~klVVVdF~a~----WC~pCk~mdp~l~ela~~~~------~~~~f~kVDVDev~dva~~y~I~amPt 71 (114)
T cd02986 3 KEVDQAIKST-AEKVLVLRFGRD----EDAVCLQLDDILSKTSHDLS------KMASIYLVDVDKVPVYTQYFDISYIPS 71 (114)
T ss_pred HHHHHHHHhc-CCCEEEEEEeCC----CChhHHHHHHHHHHHHHHcc------CceEEEEEeccccHHHHHhcCceeCcE
Confidence 5677777533 467899999999 99999999999999999984 349999999999999999999999999
Q ss_pred EEEecCCCCCC----CCCceeeeecccCHHHHHHHHHh
Q psy8428 134 FMHFPAKGKPK----PSDTLDIQRVGYSAEAIVKWIAD 167 (328)
Q Consensus 134 l~~f~p~g~~~----~~~~~~~~~~~~~a~~l~~fl~~ 167 (328)
+++|..|.... .++...++--..+.+++++-++.
T Consensus 72 fvffkngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 72 TIFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred EEEEECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHH
Confidence 99999872110 11122222122356777776643
No 46
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.50 E-value=1.6e-13 Score=109.47 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=80.8
Q ss_pred EEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCC
Q psy8428 49 LRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRL 128 (328)
Q Consensus 49 I~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v 128 (328)
.+++ ++|++. . . +..++|.|||+ ||++|+.+.|+++++|+.+... ...+.++++|+++.+++++++++
T Consensus 3 ~~~~-~~~~~~-~-~--~~~vlv~f~a~----wC~~C~~~~p~l~~l~~~~~~~---~~~~~~~~vd~~~~~~~~~~~~I 70 (104)
T cd03000 3 LDLD-DSFKDV-R-K--EDIWLVDFYAP----WCGHCKKLEPVWNEVGAELKSS---GSPVRVGKLDATAYSSIASEFGV 70 (104)
T ss_pred eech-hhhhhh-c-c--CCeEEEEEECC----CCHHHHhhChHHHHHHHHHHhc---CCcEEEEEEECccCHhHHhhcCC
Confidence 3444 678874 3 2 23689999999 9999999999999999988521 23599999999999999999999
Q ss_pred CcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhh
Q psy8428 129 NTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 129 ~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
+++||+++|+.+ . ... ..|..+.+++.+|+++.
T Consensus 71 ~~~Pt~~l~~~~-~-----~~~-~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 71 RGYPTIKLLKGD-L-----AYN-YRGPRTKDDIVEFANRV 103 (104)
T ss_pred ccccEEEEEcCC-C-----cee-ecCCCCHHHHHHHHHhh
Confidence 999999999643 1 122 24678899999999864
No 47
>KOG0908|consensus
Probab=99.49 E-value=1.1e-13 Score=124.38 Aligned_cols=108 Identities=20% Similarity=0.306 Sum_probs=90.1
Q ss_pred CeEEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 47 AVLRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 47 ~VI~L~~-~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
+||.+++ ++|+..+. ......++|+|||. ||+||+...|.|+.+|+.|. +.+|.+||+|+.++++..
T Consensus 2 ~Vi~v~~d~df~~~ls-~ag~k~v~Vdfta~----wCGPCk~IaP~Fs~lankYp-------~aVFlkVdVd~c~~taa~ 69 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELS-AAGGKLVVVDFTAS----WCGPCKRIAPIFSDLANKYP-------GAVFLKVDVDECRGTAAT 69 (288)
T ss_pred CeEEecCcHHHHHhhh-ccCceEEEEEEEec----ccchHHhhhhHHHHhhhhCc-------ccEEEEEeHHHhhchhhh
Confidence 5788877 48888874 33345799999999 99999999999999999994 689999999999999999
Q ss_pred cCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCcc
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI 173 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~i 173 (328)
+||++.||+++|..|. +.+. ..|.++..|.+-++++...+-
T Consensus 70 ~gV~amPTFiff~ng~------kid~-~qGAd~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 70 NGVNAMPTFIFFRNGV------KIDQ-IQGADASGLEEKVAKYASTSA 110 (288)
T ss_pred cCcccCceEEEEecCe------Eeee-ecCCCHHHHHHHHHHHhccCc
Confidence 9999999999999872 2332 257888888888888877553
No 48
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.49 E-value=4.5e-13 Score=119.03 Aligned_cols=122 Identities=11% Similarity=0.155 Sum_probs=89.8
Q ss_pred HHHHHHHHhhhhCC---CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcE
Q psy8428 33 GDRVLHLSEMNAKK---AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKL 109 (328)
Q Consensus 33 ~~~~~~L~~l~~~~---~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v 109 (328)
.+|+++|.+.+.++ .|.++++++|.+.+.+.+++..|+|.||++ ||++|+.+.|.++++|+.|. .+
T Consensus 66 ~kRl~el~~~~~~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~----wc~~C~~m~~~l~~LA~k~~-------~v 134 (192)
T cd02988 66 RKRLAEMKALAEKSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKD----GIPLCRLLNQHLSELARKFP-------DT 134 (192)
T ss_pred HHHHHHHHHhhhhCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECC----CCchHHHHHHHHHHHHHHCC-------CC
Confidence 34555555544332 499999999998876555567899999999 99999999999999999873 58
Q ss_pred EEEEEECcCChhhHHHcCCCcCceEEEecCCCCCCCC-CceeeeecccCHHHHHHHHHhh
Q psy8428 110 FFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPS-DTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 110 ~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~~-~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
.|+++|+++. ...|+++++||+++|+.|....+- ...++.....+.++|..+|.+.
T Consensus 135 kFvkI~ad~~---~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 135 KFVKIISTQC---IPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEEEEEhHHh---HhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 9999999864 578999999999999987211000 0011111145788888887653
No 49
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.48 E-value=2.9e-13 Score=106.02 Aligned_cols=96 Identities=15% Similarity=0.305 Sum_probs=78.8
Q ss_pred ChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcC
Q psy8428 52 DGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTA 131 (328)
Q Consensus 52 ~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~sv 131 (328)
+.++|++.+.+.+ +..++|.||++ ||++|+.+.|.++++++.+. +++.|+++|.+++++++++|+++++
T Consensus 1 s~~~~~~~~~~~~-~~~v~v~f~~~----~C~~C~~~~~~l~~l~~~~~------~~i~~~~vd~~~~~~~~~~~~i~~~ 69 (97)
T cd02984 1 SEEEFEELLKSDA-SKLLVLHFWAP----WAEPCKQMNQVFEELAKEAF------PSVLFLSIEAEELPEISEKFEITAV 69 (97)
T ss_pred CHHHHHHHHhhCC-CCEEEEEEECC----CCHHHHHHhHHHHHHHHHhC------CceEEEEEccccCHHHHHhcCCccc
Confidence 3578888876443 56799999999 99999999999999998863 4799999999999999999999999
Q ss_pred ceEEEecCCCCCCCCCceeeeecccCHHHHHHHH
Q psy8428 132 PIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 132 P~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl 165 (328)
|++++|+.| + .... ..|.+.++|.+.|
T Consensus 70 Pt~~~~~~g-~-----~~~~-~~g~~~~~l~~~~ 96 (97)
T cd02984 70 PTFVFFRNG-T-----IVDR-VSGADPKELAKKV 96 (97)
T ss_pred cEEEEEECC-E-----EEEE-EeCCCHHHHHHhh
Confidence 999999865 2 2222 2456778887765
No 50
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.48 E-value=3.3e-13 Score=133.65 Aligned_cols=112 Identities=22% Similarity=0.325 Sum_probs=94.0
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHc
Q psy8428 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (328)
Q Consensus 47 ~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l 126 (328)
.|++||++||++.+. . +..++|.|||+ ||++|+.+.|+++++|+.+... ..++.|+++|+++++++++++
T Consensus 2 ~v~~l~~~~~~~~i~-~--~~~~~v~f~a~----wC~~c~~~~~~~~~~a~~~~~~---~~~v~~~~vd~~~~~~l~~~~ 71 (462)
T TIGR01130 2 DVLVLTKDNFDDFIK-S--HEFVLVEFYAP----WCGHCKSLAPEYEKAADELKKK---GPPIKLAKVDATEEKDLAQKY 71 (462)
T ss_pred CceECCHHHHHHHHh-c--CCCEEEEEECC----CCHHHHhhhHHHHHHHHHHhhc---CCceEEEEEECCCcHHHHHhC
Confidence 578999999999885 3 23589999999 9999999999999999988632 246999999999999999999
Q ss_pred CCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCcc
Q psy8428 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI 173 (328)
Q Consensus 127 ~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~i 173 (328)
+|+++||+++|++|+.. ...+ .|+.+++++.+|+.+.++..+
T Consensus 72 ~i~~~Pt~~~~~~g~~~----~~~~-~g~~~~~~l~~~i~~~~~~~~ 113 (462)
T TIGR01130 72 GVSGYPTLKIFRNGEDS----VSDY-NGPRDADGIVKYMKKQSGPAV 113 (462)
T ss_pred CCccccEEEEEeCCccc----eeEe-cCCCCHHHHHHHHHHhcCCCc
Confidence 99999999999977310 1222 578899999999999988664
No 51
>PTZ00102 disulphide isomerase; Provisional
Probab=99.45 E-value=4.4e-13 Score=133.99 Aligned_cols=112 Identities=9% Similarity=0.194 Sum_probs=94.4
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
++|.+|+.++|++.+.+. +.+++|.|||+ ||++|+.++|+|+++|+.+.. .+.+.|+++|.+++...+++
T Consensus 357 ~~v~~l~~~~f~~~v~~~--~k~vlv~f~a~----wC~~C~~~~p~~~~~a~~~~~----~~~v~~~~id~~~~~~~~~~ 426 (477)
T PTZ00102 357 GPVKVVVGNTFEEIVFKS--DKDVLLEIYAP----WCGHCKNLEPVYNELGEKYKD----NDSIIVAKMNGTANETPLEE 426 (477)
T ss_pred CCeEEecccchHHHHhcC--CCCEEEEEECC----CCHHHHHHHHHHHHHHHHhcc----CCcEEEEEEECCCCccchhc
Confidence 358899999999987544 55799999999 999999999999999998753 24699999999999999999
Q ss_pred cCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCc
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ 172 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~ 172 (328)
++++++||+++|++|++. ... ..|..+.+++.+||+++....
T Consensus 427 ~~v~~~Pt~~~~~~~~~~----~~~-~~G~~~~~~l~~~i~~~~~~~ 468 (477)
T PTZ00102 427 FSWSAFPTILFVKAGERT----PIP-YEGERTVEGFKEFVNKHATNP 468 (477)
T ss_pred CCCcccCeEEEEECCCcc----eeE-ecCcCCHHHHHHHHHHcCCCC
Confidence 999999999999987421 112 247789999999999988653
No 52
>KOG0190|consensus
Probab=99.42 E-value=5e-13 Score=132.27 Aligned_cols=110 Identities=17% Similarity=0.313 Sum_probs=91.3
Q ss_pred CCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHH
Q psy8428 45 KKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQ 124 (328)
Q Consensus 45 ~~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~ 124 (328)
+++|..|-.+||++++.+. ...|+|.|||| ||+||++++|.|+++|+.|.. .+++.++++|.+.|. ..
T Consensus 365 ~~pVkvvVgknfd~iv~de--~KdVLvEfyAP----WCgHCk~laP~~eeLAe~~~~----~~~vviAKmDaTaNd--~~ 432 (493)
T KOG0190|consen 365 RSPVKVVVGKNFDDIVLDE--GKDVLVEFYAP----WCGHCKALAPIYEELAEKYKD----DENVVIAKMDATAND--VP 432 (493)
T ss_pred cCCeEEEeecCHHHHhhcc--ccceEEEEcCc----ccchhhhhhhHHHHHHHHhcC----CCCcEEEEecccccc--Cc
Confidence 3569999999999999754 45699999999 999999999999999999974 357999999999875 23
Q ss_pred HcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcC
Q psy8428 125 MLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (328)
Q Consensus 125 ~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~ 170 (328)
..+++++||+++||.|++. ++..| .|+++.+++..|+.+.-+
T Consensus 433 ~~~~~~fPTI~~~pag~k~-~pv~y---~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 433 SLKVDGFPTILFFPAGHKS-NPVIY---NGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred cccccccceEEEecCCCCC-CCccc---CCCcchHHHHhhhccCCC
Confidence 4678889999999998432 23344 488999999999988765
No 53
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.40 E-value=2.8e-12 Score=101.04 Aligned_cols=85 Identities=16% Similarity=0.295 Sum_probs=72.9
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecCCCCCCC
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKP 145 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~ 145 (328)
+-.++++|+++ ||+.|+.+.|.++++++.+. +++.+.++|.++++++.++++++++|++++|++| +
T Consensus 13 ~~~vlv~f~a~----~C~~C~~~~~~l~~l~~~~~------~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g-~--- 78 (97)
T cd02949 13 DRLILVLYTSP----TCGPCRTLKPILNKVIDEFD------GAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK-E--- 78 (97)
T ss_pred CCeEEEEEECC----CChhHHHHHHHHHHHHHHhC------CceEEEEEECCCCHHHHHHCCCeeccEEEEEECC-e---
Confidence 45789999999 99999999999999998874 4699999999999999999999999999999865 2
Q ss_pred CCceeeeecccCHHHHHHHHH
Q psy8428 146 SDTLDIQRVGYSAEAIVKWIA 166 (328)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fl~ 166 (328)
......+..+.+++.+|++
T Consensus 79 --~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 79 --LVKEISGVKMKSEYREFIE 97 (97)
T ss_pred --EEEEEeCCccHHHHHHhhC
Confidence 2344456778888988873
No 54
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.40 E-value=1.8e-12 Score=103.24 Aligned_cols=95 Identities=11% Similarity=0.163 Sum_probs=75.5
Q ss_pred hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHH---HHHHHHcccccCCCCcEEEEEEECcC----ChhhHHHc
Q psy8428 54 QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEY---TIVANSFRYSQMYSNKLFFILVDFDE----GSDVFQML 126 (328)
Q Consensus 54 ~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef---~~vA~s~~~~~~~~~~v~F~~vD~~~----~~~lf~~l 126 (328)
++|++.+. . +.+++|.|+|+ ||++|+.+.|.+ +++++.+. +++.++.+|.++ ++++.+++
T Consensus 2 ~~~~~~~~-~--~k~vlv~f~a~----wC~~C~~~~~~~~~~~~~~~~~~------~~~~~~~vd~~~~~~~~~~~~~~~ 68 (104)
T cd02953 2 AALAQALA-Q--GKPVFVDFTAD----WCVTCKVNEKVVFSDPEVQAALK------KDVVLLRADWTKNDPEITALLKRF 68 (104)
T ss_pred HHHHHHHH-c--CCeEEEEEEcc----hhHHHHHHHHHhcCCHHHHHHHh------CCeEEEEEecCCCCHHHHHHHHHc
Confidence 46777663 3 45799999999 999999999998 67887764 369999999987 57899999
Q ss_pred CCCcCceEEEecC-CCCCCCCCceeeeecccCHHHHHHHHH
Q psy8428 127 RLNTAPIFMHFPA-KGKPKPSDTLDIQRVGYSAEAIVKWIA 166 (328)
Q Consensus 127 ~v~svP~l~~f~p-~g~~~~~~~~~~~~~~~~a~~l~~fl~ 166 (328)
+++++|++++|.+ +|+. .....|..+.+++.++|+
T Consensus 69 ~i~~~Pti~~~~~~~g~~-----~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 69 GVFGPPTYLFYGPGGEPE-----PLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCEEEEECCCCCCC-----CcccccccCHHHHHHHhC
Confidence 9999999999987 3322 222346788999988873
No 55
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.39 E-value=2.6e-12 Score=104.57 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=75.1
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecCCCCCCC
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKP 145 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~ 145 (328)
+..++|+|+|+ ||++|+.++|.++++|+.+ +++.|.++|.++++++.++|+++++|++++|++|++.
T Consensus 22 ~~~vvv~f~a~----wC~~C~~~~~~l~~la~~~-------~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~-- 88 (113)
T cd02975 22 PVDLVVFSSKE----GCQYCEVTKQLLEELSELS-------DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKD-- 88 (113)
T ss_pred CeEEEEEeCCC----CCCChHHHHHHHHHHHHhc-------CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeec--
Confidence 45688999999 9999999999999999764 3589999999999999999999999999999976321
Q ss_pred CCceeeeecccCHHHHHHHHHhhcCC
Q psy8428 146 SDTLDIQRVGYSAEAIVKWIADRTDI 171 (328)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fl~~~t~~ 171 (328)
....+ .|..+.+++.+||....+.
T Consensus 89 -~~~~~-~G~~~~~el~~~i~~i~~~ 112 (113)
T cd02975 89 -GGIRY-YGLPAGYEFASLIEDIVRV 112 (113)
T ss_pred -ceEEE-EecCchHHHHHHHHHHHhc
Confidence 22233 3556678999999887653
No 56
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.36 E-value=4.7e-12 Score=100.17 Aligned_cols=89 Identities=18% Similarity=0.310 Sum_probs=75.9
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCC--cCceEEEecCCCCC
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLN--TAPIFMHFPAKGKP 143 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~--svP~l~~f~p~g~~ 143 (328)
+.+++++|+++ ||++|+++.|.++++|+.+. +++.|+.+|.++++++.+++|++ ++|++.+++.+.+
T Consensus 12 ~~~~~~~f~~~----~~~~~~~~~~~~~~vA~~~~------~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~- 80 (103)
T cd02982 12 GKPLLVLFYNK----DDSESEELRERFKEVAKKFK------GKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDG- 80 (103)
T ss_pred CCCEEEEEEcC----ChhhHHHHHHHHHHHHHHhC------CeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccc-
Confidence 45799999999 99999999999999999996 57999999999999999999999 9999999998411
Q ss_pred CCCCceeeeecccCHHHHHHHHHhh
Q psy8428 144 KPSDTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 144 ~~~~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
..|....+..+.+++.+|+++.
T Consensus 81 ---~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 81 ---KKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred ---cccCCCccccCHHHHHHHHHhh
Confidence 2344433445899999999864
No 57
>PTZ00051 thioredoxin; Provisional
Probab=99.35 E-value=8.7e-12 Score=97.83 Aligned_cols=79 Identities=25% Similarity=0.365 Sum_probs=67.9
Q ss_pred eEEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHc
Q psy8428 48 VLRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (328)
Q Consensus 48 VI~L~~-~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l 126 (328)
+.++++ ++|++.+. . +..+++.||++ ||++|+.+.|.++++++.+. ++.|+.+|.++++++.+++
T Consensus 2 v~~i~~~~~~~~~~~-~--~~~vli~f~~~----~C~~C~~~~~~l~~l~~~~~-------~~~~~~vd~~~~~~~~~~~ 67 (98)
T PTZ00051 2 VHIVTSQAEFESTLS-Q--NELVIVDFYAE----WCGPCKRIAPFYEECSKEYT-------KMVFVKVDVDELSEVAEKE 67 (98)
T ss_pred eEEecCHHHHHHHHh-c--CCeEEEEEECC----CCHHHHHHhHHHHHHHHHcC-------CcEEEEEECcchHHHHHHC
Confidence 456665 57777653 3 55799999999 99999999999999998752 5899999999999999999
Q ss_pred CCCcCceEEEecCC
Q psy8428 127 RLNTAPIFMHFPAK 140 (328)
Q Consensus 127 ~v~svP~l~~f~p~ 140 (328)
+++++|++++|+.|
T Consensus 68 ~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 68 NITSMPTFKVFKNG 81 (98)
T ss_pred CCceeeEEEEEeCC
Confidence 99999999999876
No 58
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.35 E-value=8.7e-12 Score=94.75 Aligned_cols=92 Identities=22% Similarity=0.352 Sum_probs=75.7
Q ss_pred hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCce
Q psy8428 54 QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPI 133 (328)
Q Consensus 54 ~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~ 133 (328)
++|++.+. .. ..++++||++ ||++|+++.|.++++++. . +++.|+.+|++++++++++++++++|+
T Consensus 1 ~~~~~~~~-~~--~~~ll~~~~~----~C~~C~~~~~~~~~~~~~-~------~~~~~~~i~~~~~~~~~~~~~v~~~P~ 66 (93)
T cd02947 1 EEFEELIK-SA--KPVVVDFWAP----WCGPCKAIAPVLEELAEE-Y------PKVKFVKVDVDENPELAEEYGVRSIPT 66 (93)
T ss_pred CchHHHHh-cC--CcEEEEEECC----CChhHHHhhHHHHHHHHH-C------CCceEEEEECCCChhHHHhcCcccccE
Confidence 36777764 32 5689999999 999999999999999987 2 469999999999999999999999999
Q ss_pred EEEecCCCCCCCCCceeeeecccCHHHHHHHH
Q psy8428 134 FMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 134 l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl 165 (328)
+++|++|+ ......+..+.+++.+|+
T Consensus 67 ~~~~~~g~------~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 67 FLFFKNGK------EVDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEECCE------EEEEEecCCCHHHHHHHh
Confidence 99998762 223334666778898887
No 59
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.34 E-value=1.2e-11 Score=104.77 Aligned_cols=99 Identities=11% Similarity=0.223 Sum_probs=77.9
Q ss_pred hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC--hhhHHHcCCCcC
Q psy8428 54 QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG--SDVFQMLRLNTA 131 (328)
Q Consensus 54 ~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~--~~lf~~l~v~sv 131 (328)
..|++.+. . +-.++|.|||+ ||++|+.+.|.++++++.|. +++.|+.+|++++ +++.++|+|+++
T Consensus 11 ~~~~~a~~-~--gk~vvV~F~A~----WC~~C~~~~p~l~~l~~~~~------~~~~~v~v~vd~~~~~~~~~~~~V~~i 77 (142)
T cd02950 11 TPPEVALS-N--GKPTLVEFYAD----WCTVCQEMAPDVAKLKQKYG------DQVNFVMLNVDNPKWLPEIDRYRVDGI 77 (142)
T ss_pred CCHHHHHh-C--CCEEEEEEECC----cCHHHHHhHHHHHHHHHHhc------cCeeEEEEEcCCcccHHHHHHcCCCCC
Confidence 45566543 3 34699999999 99999999999999999885 3577888888764 689999999999
Q ss_pred ceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcC
Q psy8428 132 PIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (328)
Q Consensus 132 P~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~ 170 (328)
|++++|.++|+ ......|..+.+++.+++.+...
T Consensus 78 Pt~v~~~~~G~-----~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 78 PHFVFLDREGN-----EEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred CEEEEECCCCC-----EEEEEeCCCCHHHHHHHHHHHHc
Confidence 99999965443 23334566778889999988765
No 60
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.31 E-value=2e-11 Score=100.75 Aligned_cols=100 Identities=14% Similarity=0.159 Sum_probs=74.9
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC------
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG------ 119 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~------ 119 (328)
.++++++.+++++.+.++ -.++|+|+++ ||++|+.+.|.++++++.. ++-|..+|++.+
T Consensus 6 ~~~~~it~~~~~~~i~~~---~~~iv~f~~~----~Cp~C~~~~P~l~~~~~~~--------~~~~y~vdvd~~~~~~~~ 70 (122)
T TIGR01295 6 KGLEVTTVVRALEALDKK---ETATFFIGRK----TCPYCRKFSGTLSGVVAQT--------KAPIYYIDSENNGSFEMS 70 (122)
T ss_pred ccceecCHHHHHHHHHcC---CcEEEEEECC----CChhHHHHhHHHHHHHHhc--------CCcEEEEECCCccCcCcc
Confidence 467889999999988533 3589999999 9999999999999999873 244666666632
Q ss_pred -----hhhHHHcC----CCcCceEEEecCCCCCCCCCceeeeec-ccCHHHHHHHHH
Q psy8428 120 -----SDVFQMLR----LNTAPIFMHFPAKGKPKPSDTLDIQRV-GYSAEAIVKWIA 166 (328)
Q Consensus 120 -----~~lf~~l~----v~svP~l~~f~p~g~~~~~~~~~~~~~-~~~a~~l~~fl~ 166 (328)
+++.++++ +.++||+++|+.| ...+...| ..+.++|.+|+.
T Consensus 71 ~~~~~~~~~~~~~i~~~i~~~PT~v~~k~G------k~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 71 SLNDLTAFRSRFGIPTSFMGTPTFVHITDG------KQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cHHHHHHHHHHcCCcccCCCCCEEEEEeCC------eEEEEEeCCCCCHHHHHHHhh
Confidence 24556655 5569999999987 23444445 356999999874
No 61
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.30 E-value=8.6e-12 Score=102.41 Aligned_cols=78 Identities=14% Similarity=0.261 Sum_probs=65.8
Q ss_pred hhhHHHHHHcCCCCccEEEEEee-------CCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC-------
Q psy8428 53 GQKYKEYIKNGPRNYSAIVMFTA-------LAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE------- 118 (328)
Q Consensus 53 ~~nf~~~v~~~~r~y~vvV~ftA-------~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~------- 118 (328)
.++|++.+.+ .++-+++|.|+| + ||++|+.++|.++++++.+. +++.|.++|+++
T Consensus 9 ~~~f~~~i~~-~~~~~vvV~F~A~~~~~~~~----WC~pCr~~~P~l~~l~~~~~------~~v~fv~Vdvd~~~~w~d~ 77 (119)
T cd02952 9 YEEFLKLLKS-HEGKPIFILFYGDKDPDGQS----WCPDCVKAEPVVREALKAAP------EDCVFIYCDVGDRPYWRDP 77 (119)
T ss_pred HHHHHHHHHh-cCCCeEEEEEEccCCCCCCC----CCHhHHhhchhHHHHHHHCC------CCCEEEEEEcCCcccccCc
Confidence 4677777753 334579999999 8 99999999999999999874 368999999986
Q ss_pred ChhhHHHcCCC-cCceEEEecCCC
Q psy8428 119 GSDVFQMLRLN-TAPIFMHFPAKG 141 (328)
Q Consensus 119 ~~~lf~~l~v~-svP~l~~f~p~g 141 (328)
+.++.++++|+ ++||+++|..++
T Consensus 78 ~~~~~~~~~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 78 NNPFRTDPKLTTGVPTLLRWKTPQ 101 (119)
T ss_pred chhhHhccCcccCCCEEEEEcCCc
Confidence 46999999999 999999997663
No 62
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.29 E-value=1.9e-11 Score=121.08 Aligned_cols=114 Identities=17% Similarity=0.266 Sum_probs=91.0
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
++|..|+.+||++.+.+. +..++|+|+|+ ||++|+.+.|.++++|+.+... +.++.|+++|++.+.- ..
T Consensus 346 ~~v~~l~~~~f~~~v~~~--~~~vlv~f~a~----wC~~C~~~~p~~~~~~~~~~~~---~~~i~~~~id~~~n~~-~~- 414 (462)
T TIGR01130 346 GPVKVLVGKNFDEIVLDE--TKDVLVEFYAP----WCGHCKNLAPIYEELAEKYKDA---ESDVVIAKMDATANDV-PP- 414 (462)
T ss_pred CccEEeeCcCHHHHhccC--CCeEEEEEECC----CCHhHHHHHHHHHHHHHHhhcC---CCcEEEEEEECCCCcc-CC-
Confidence 358899999999998643 56799999999 9999999999999999988621 1369999999998753 33
Q ss_pred cCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCcce
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQIR 174 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~i~ 174 (328)
++++++||+++|++|++. +. ... .|+.+.+++.+||.++....++
T Consensus 415 ~~i~~~Pt~~~~~~~~~~-~~--~~~-~g~~~~~~l~~~l~~~~~~~~~ 459 (462)
T TIGR01130 415 FEVEGFPTIKFVPAGKKS-EP--VPY-DGDRTLEDFSKFIAKHATFPLE 459 (462)
T ss_pred CCccccCEEEEEeCCCCc-Cc--eEe-cCcCCHHHHHHHHHhcCCCCCc
Confidence 999999999999987421 11 222 4678899999999998876654
No 63
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.23 E-value=9.6e-11 Score=88.71 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=66.6
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecCCCCCCCCCce
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTL 149 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~ 149 (328)
+..|+++ ||++|+.+.|.++++++.+. +++.+.++|.++++++.+++|++++|++++ .| + .
T Consensus 3 v~~f~~~----~C~~C~~~~~~l~~l~~~~~------~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g-~------~ 63 (82)
T TIGR00411 3 IELFTSP----TCPYCPAAKRVVEEVAKEMG------DAVEVEYINVMENPQKAMEYGIMAVPAIVI--NG-D------V 63 (82)
T ss_pred EEEEECC----CCcchHHHHHHHHHHHHHhc------CceEEEEEeCccCHHHHHHcCCccCCEEEE--CC-E------E
Confidence 5689999 99999999999999998874 459999999999999999999999999986 33 1 1
Q ss_pred eeeecccCHHHHHHHHHhh
Q psy8428 150 DIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 150 ~~~~~~~~a~~l~~fl~~~ 168 (328)
...|..+.+++.+++.+.
T Consensus 64 -~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 64 -EFIGAPTKEELVEAIKKR 81 (82)
T ss_pred -EEecCCCHHHHHHHHHhh
Confidence 224666899999998764
No 64
>KOG4277|consensus
Probab=99.23 E-value=2.1e-11 Score=112.51 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=78.7
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecCCCCCCC
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKP 145 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~ 145 (328)
+--++|.|||| ||.+|+.++|+|.+|.-.... .+.++..+++|++.-|.++.++||+++||+.+|+.+
T Consensus 43 ddiW~VdFYAP----WC~HCKkLePiWdeVG~elkd---ig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd----- 110 (468)
T KOG4277|consen 43 DDIWFVDFYAP----WCAHCKKLEPIWDEVGHELKD---IGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD----- 110 (468)
T ss_pred CCeEEEEeech----hhhhcccccchhHHhCcchhh---cCCceeecccccccchhhHhhhccCCCceEEEecCC-----
Confidence 44588999999 999999999999999977653 235799999999999999999999999999999865
Q ss_pred CCceeeeecccCHHHHHHHHHhhcCC
Q psy8428 146 SDTLDIQRVGYSAEAIVKWIADRTDI 171 (328)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fl~~~t~~ 171 (328)
..++. .||++.+++++|..+-.+.
T Consensus 111 -~a~dY-RG~R~Kd~iieFAhR~a~a 134 (468)
T KOG4277|consen 111 -HAIDY-RGGREKDAIIEFAHRCAAA 134 (468)
T ss_pred -eeeec-CCCccHHHHHHHHHhcccc
Confidence 34555 4899999999998876663
No 65
>KOG0912|consensus
Probab=99.20 E-value=3.9e-11 Score=110.88 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=93.7
Q ss_pred eChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCc
Q psy8428 51 FDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNT 130 (328)
Q Consensus 51 L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~s 130 (328)
|+.+|.+..+ +. +--++|-|||. ||+..+.++|+|++.|..+.+..++ +++.+++||++.+.++.++|.|+.
T Consensus 1 lt~~N~~~il-~s--~elvfv~FyAd----WCrFSq~L~piF~EAa~~~~~e~P~-~kvvwg~VDcd~e~~ia~ky~I~K 72 (375)
T KOG0912|consen 1 LTSENIDSIL-DS--NELVFVNFYAD----WCRFSQMLKPIFEEAAAKFKQEFPE-GKVVWGKVDCDKEDDIADKYHINK 72 (375)
T ss_pred CccccHHHhh-cc--ceEEeeeeehh----hchHHHHHhHHHHHHHHHHHHhCCC-cceEEEEcccchhhHHhhhhcccc
Confidence 4678888876 34 45788999999 9999999999999999999865555 789999999999999999999999
Q ss_pred CceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCcc
Q psy8428 131 APIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI 173 (328)
Q Consensus 131 vP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~i 173 (328)
+||+.+|..|.-.+ .+|. |.++++.+.+||++.+..++
T Consensus 73 yPTlKvfrnG~~~~--rEYR---g~RsVeaL~efi~kq~s~~i 110 (375)
T KOG0912|consen 73 YPTLKVFRNGEMMK--REYR---GQRSVEALIEFIEKQLSDPI 110 (375)
T ss_pred Cceeeeeeccchhh--hhhc---cchhHHHHHHHHHHHhccHH
Confidence 99999999873222 2453 77899999999999988775
No 66
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.20 E-value=1.1e-10 Score=96.05 Aligned_cols=89 Identities=12% Similarity=0.335 Sum_probs=71.6
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHH---HHHHHcccccCCCCcEEEEEEECcCC-------------hhhHHHcCCCc
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYT---IVANSFRYSQMYSNKLFFILVDFDEG-------------SDVFQMLRLNT 130 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~---~vA~s~~~~~~~~~~v~F~~vD~~~~-------------~~lf~~l~v~s 130 (328)
..++|.|+|+ ||++|+.++|++. .+++.+. +++.+.++|++++ +++..+|++++
T Consensus 15 k~vlv~f~a~----wC~~C~~~~~~~~~~~~~~~~~~------~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 15 KPLLLLFSQP----GCPYCDKLKRDYLNDPAVQAYIR------AHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred CcEEEEEeCC----CCHHHHHHHHHhcCcHHHHHHHH------hheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 4799999999 9999999999985 5666554 3588999999874 68999999999
Q ss_pred CceEEEecCC-CCCCCCCceeeeecccCHHHHHHHHHhhcC
Q psy8428 131 APIFMHFPAK-GKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (328)
Q Consensus 131 vP~l~~f~p~-g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~ 170 (328)
+||+++|.++ |+. .....|..+.+++.++++...+
T Consensus 85 ~Pt~~~~~~~gg~~-----~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 85 TPTVIFLDPEGGKE-----IARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred ccEEEEEcCCCCce-----eEEecCCCCHHHHHHHHHHHHh
Confidence 9999999986 432 3333566778889998887654
No 67
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.17 E-value=6.6e-11 Score=106.86 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=76.3
Q ss_pred ChhhHHHHHHcCCCCccEEEEEee---CCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCC
Q psy8428 52 DGQKYKEYIKNGPRNYSAIVMFTA---LAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRL 128 (328)
Q Consensus 52 ~~~nf~~~v~~~~r~y~vvV~ftA---~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v 128 (328)
..+.|.+.+. + +. .+++|++ + ||++|+.+.|.++++|+.+. +-++.+.++|.++++++.++|+|
T Consensus 9 ~~~~~~~~~~-~--~~-~i~~f~~~~a~----wC~~C~~~~p~l~~la~~~~-----~~~i~~v~vd~~~~~~l~~~~~V 75 (215)
T TIGR02187 9 LKELFLKELK-N--PV-EIVVFTDNDKE----GCQYCKETEQLLEELSEVSP-----KLKLEIYDFDTPEDKEEAEKYGV 75 (215)
T ss_pred HHHHHHHhcC-C--Ce-EEEEEcCCCCC----CCCchHHHHHHHHHHHhhCC-----CceEEEEecCCcccHHHHHHcCC
Confidence 3455444442 3 33 4566777 6 99999999999999998873 12467888888899999999999
Q ss_pred CcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCc
Q psy8428 129 NTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ 172 (328)
Q Consensus 129 ~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~ 172 (328)
+++||+++|++|. .......|..+.+++.+||++.++.+
T Consensus 76 ~~~Pt~~~f~~g~-----~~~~~~~G~~~~~~l~~~i~~~~~~~ 114 (215)
T TIGR02187 76 ERVPTTIILEEGK-----DGGIRYTGIPAGYEFAALIEDIVRVS 114 (215)
T ss_pred CccCEEEEEeCCe-----eeEEEEeecCCHHHHHHHHHHHHHhc
Confidence 9999999999862 11112346667788999998887644
No 68
>KOG1731|consensus
Probab=99.15 E-value=5.8e-11 Score=117.86 Aligned_cols=88 Identities=15% Similarity=0.288 Sum_probs=75.6
Q ss_pred hCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC--Chh
Q psy8428 44 AKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE--GSD 121 (328)
Q Consensus 44 ~~~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~--~~~ 121 (328)
.+++|++|+.++|+..+. ++| ...+|.|+++ ||++|+.|+|.|+++|+...+= ..-|..+.||+.+ |.+
T Consensus 37 ~~D~ii~Ld~~tf~~~v~-~~~-~~~lVEFy~s----wCGhCr~FAPtfk~~A~dl~~W---~~vv~vaaVdCA~~~N~~ 107 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVF-GSR-KAKLVEFYNS----WCGHCRAFAPTFKKFAKDLEKW---RPVVRVAAVDCADEENVK 107 (606)
T ss_pred CCCCeEEeehhhhHHHhc-ccc-hhHHHHHHHh----hhhhhhhcchHHHHHHHHHhcc---cceeEEEEeeccchhhhh
Confidence 458899999999999986 444 3467999999 9999999999999999764320 1458999999987 899
Q ss_pred hHHHcCCCcCceEEEecCC
Q psy8428 122 VFQMLRLNTAPIFMHFPAK 140 (328)
Q Consensus 122 lf~~l~v~svP~l~~f~p~ 140 (328)
+|++++|++.|++.+|||+
T Consensus 108 lCRef~V~~~Ptlryf~~~ 126 (606)
T KOG1731|consen 108 LCREFSVSGYPTLRYFPPD 126 (606)
T ss_pred hHhhcCCCCCceeeecCCc
Confidence 9999999999999999997
No 69
>KOG0191|consensus
Probab=99.10 E-value=3.2e-10 Score=110.98 Aligned_cols=111 Identities=17% Similarity=0.271 Sum_probs=90.1
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
+...+++..+|....... +..++|+|+|+ ||++|+.+.|+|+++|+.+. +.+.++.+|++++++++++
T Consensus 29 ~~~~~~~~~~~~~~~~~~--~~~~~v~fyap----wc~~c~~l~~~~~~~~~~l~------~~~~~~~vd~~~~~~~~~~ 96 (383)
T KOG0191|consen 29 GVVSELTLDSFFDFLLKD--DSPWLVEFYAP----WCGHCKKLAPTYKKLAKALK------GKVKIGAVDCDEHKDLCEK 96 (383)
T ss_pred cchhhhhccccHHHhhcc--CCceEEEEECC----CCcchhhhchHHHHHHHHhc------CceEEEEeCchhhHHHHHh
Confidence 345555666666665433 55789999999 99999999999999999986 4799999999999999999
Q ss_pred cCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCcce
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQIR 174 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~i~ 174 (328)
+++++.||+.+|.++.+ ..++ .+..+++++++|+.+.+...+.
T Consensus 97 y~i~gfPtl~~f~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~ 139 (383)
T KOG0191|consen 97 YGIQGFPTLKVFRPGKK---PIDY---SGPRNAESLAEFLIKELEPSVK 139 (383)
T ss_pred cCCccCcEEEEEcCCCc---eeec---cCcccHHHHHHHHHHhhccccc
Confidence 99999999999998721 1222 3578899999999988876654
No 70
>KOG0191|consensus
Probab=99.06 E-value=6.7e-10 Score=108.70 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=94.3
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcC
Q psy8428 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (328)
Q Consensus 48 VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~ 127 (328)
+.+++++||++.+.+. +-.++|.|+|| ||++|+.+.|+|+++|+.... ...+..+++|++.++.++++++
T Consensus 146 v~~l~~~~~~~~~~~~--~~~~lv~f~aP----wc~~ck~l~~~~~~~a~~~~~----~~~v~~~~~d~~~~~~~~~~~~ 215 (383)
T KOG0191|consen 146 VFELTKDNFDETVKDS--DADWLVEFYAP----WCGHCKKLAPEWEKLAKLLKS----KENVELGKIDATVHKSLASRLE 215 (383)
T ss_pred eEEccccchhhhhhcc--CcceEEEEecc----ccHHhhhcChHHHHHHHHhcc----CcceEEEeeccchHHHHhhhhc
Confidence 9999999999988644 55688999999 999999999999999998752 3579999999999999999999
Q ss_pred CCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCc
Q psy8428 128 LNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ 172 (328)
Q Consensus 128 v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~ 172 (328)
++..|++.+|+++.+ .... ..+.++.+.+.+|+++..+.+
T Consensus 216 v~~~Pt~~~f~~~~~--~~~~---~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 216 VRGYPTLKLFPPGEE--DIYY---YSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred ccCCceEEEecCCCc--cccc---ccccccHHHHHHHHHhhcCCC
Confidence 999999999999843 1112 247789999999999988875
No 71
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.06 E-value=2.2e-09 Score=96.91 Aligned_cols=98 Identities=13% Similarity=0.149 Sum_probs=76.8
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcC
Q psy8428 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (328)
Q Consensus 48 VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~ 127 (328)
--.|++++.+.+ .+.. +-..++.|||+ ||++|+.+.|.+++++... +++.+.++|.++++++.++++
T Consensus 117 ~~~L~~~~~~~l-~~~~-~pv~I~~F~a~----~C~~C~~~~~~l~~l~~~~-------~~i~~~~vD~~~~~~~~~~~~ 183 (215)
T TIGR02187 117 EPGLSEKTVELL-QSLD-EPVRIEVFVTP----TCPYCPYAVLMAHKFALAN-------DKILGEMIEANENPDLAEKYG 183 (215)
T ss_pred CCCCCHHHHHHH-HhcC-CCcEEEEEECC----CCCCcHHHHHHHHHHHHhc-------CceEEEEEeCCCCHHHHHHhC
Confidence 346777766654 3222 33456669999 9999999999999998763 469999999999999999999
Q ss_pred CCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHh
Q psy8428 128 LNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (328)
Q Consensus 128 v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~ 167 (328)
++++||++++..+ .. ..|..+.+++.+|+.+
T Consensus 184 V~~vPtl~i~~~~------~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 184 VMSVPKIVINKGV------EE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred CccCCEEEEecCC------EE---EECCCCHHHHHHHHHh
Confidence 9999999998654 11 2466788999999875
No 72
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.03 E-value=1.5e-09 Score=111.48 Aligned_cols=107 Identities=12% Similarity=0.151 Sum_probs=80.2
Q ss_pred eEEeC-hhhHHHHHHc-CCCCccEEEEEeeCCCCCCCccchhhHHHH---HHHHHHcccccCCCCcEEEEEEECcC----
Q psy8428 48 VLRFD-GQKYKEYIKN-GPRNYSAIVMFTALAPQRNCHICVSASDEY---TIVANSFRYSQMYSNKLFFILVDFDE---- 118 (328)
Q Consensus 48 VI~L~-~~nf~~~v~~-~~r~y~vvV~ftA~~~~~~C~~C~~~~pef---~~vA~s~~~~~~~~~~v~F~~vD~~~---- 118 (328)
..+++ .+++++.+.+ ..++..++|+|||+ ||.+|++++|+. +++++.+. ++.+.++|+++
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~----WC~~Ck~~e~~~~~~~~v~~~l~-------~~~~v~vDvt~~~~~ 522 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYAD----WCVACKEFEKYTFSDPQVQQALA-------DTVLLQADVTANNAE 522 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECC----cCHhHHHHHHHhcCCHHHHHHhc-------CCEEEEEECCCCChh
Confidence 44554 4677777642 22356799999999 999999999975 66776652 48899999986
Q ss_pred ChhhHHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhh
Q psy8428 119 GSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 119 ~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
++++.++++++++|++++|+++|+..+ .....|..+++++.+++++.
T Consensus 523 ~~~l~~~~~v~g~Pt~~~~~~~G~~i~---~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 523 DVALLKHYNVLGLPTILFFDAQGQEIP---DARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred hHHHHHHcCCCCCCEEEEECCCCCCcc---cccccCCCCHHHHHHHHHHh
Confidence 368899999999999999987654311 12224668899999999875
No 73
>PTZ00062 glutaredoxin; Provisional
Probab=99.01 E-value=2.6e-09 Score=95.66 Aligned_cols=91 Identities=12% Similarity=0.176 Sum_probs=72.8
Q ss_pred ChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcC
Q psy8428 52 DGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTA 131 (328)
Q Consensus 52 ~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~sv 131 (328)
+.+.|++.+. +++ -.++++|+|+ ||++|+.+.|.++++|+.+. ++.|++||.+ ++|.++
T Consensus 5 ~~ee~~~~i~-~~~-g~~vl~f~a~----w~~~C~~m~~vl~~l~~~~~-------~~~F~~V~~d--------~~V~~v 63 (204)
T PTZ00062 5 KKEEKDKLIE-SNT-GKLVLYVKSS----KEPEYEQLMDVCNALVEDFP-------SLEFYVVNLA--------DANNEY 63 (204)
T ss_pred CHHHHHHHHh-cCC-CcEEEEEeCC----CCcchHHHHHHHHHHHHHCC-------CcEEEEEccc--------cCcccc
Confidence 4567777764 222 3488999999 99999999999999999883 5999999988 999999
Q ss_pred ceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcC
Q psy8428 132 PIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (328)
Q Consensus 132 P~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~ 170 (328)
|++++|..| ..++.. .|.++.++.+++++..+
T Consensus 64 Ptfv~~~~g------~~i~r~-~G~~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 64 GVFEFYQNS------QLINSL-EGCNTSTLVSFIRGWAQ 95 (204)
T ss_pred eEEEEEECC------EEEeee-eCCCHHHHHHHHHHHcC
Confidence 999999987 234432 46678888888877765
No 74
>KOG3356|consensus
Probab=99.00 E-value=1.7e-10 Score=91.84 Aligned_cols=114 Identities=23% Similarity=0.360 Sum_probs=90.8
Q ss_pred hcchhhHHHHHHHHHHHHhhhhhhhhhcCCCceec--cCCc----eEEEcCCCccchhhHHHHHHHHHHHHHHHHHHhhh
Q psy8428 208 LYNKLMWGVAAVLFCFAMISGQMWNHIRGPPFIHK--NQNG----IAYIHGSSQGQFVLETYIVILLNAAIVVGMILISE 281 (328)
Q Consensus 208 ~~~r~~w~~~sl~~i~~~isG~mfn~Ir~~P~~~~--~~~G----~~y~~~g~~~QfgiE~~iv~~~Y~~l~~~~i~L~~ 281 (328)
+.++.....+-+..+++.++|..|+.|-.||-++. |.+| +.|.+|.-++||.+||..-|+++..-++++|.|..
T Consensus 26 lps~mtv~alivvsyflv~~g~iydvivepp~igs~~d~~g~~rpv~fla~rvngqyimeglas~flf~lgglg~imld~ 105 (147)
T KOG3356|consen 26 LPSPMTVYALIVVSYFLVTGGIIYDVIVEPPSIGSMTDEHGHQRPVAFLAGRVNGQYIMEGLASSFLFTLGGLGFIMLDR 105 (147)
T ss_pred CCCchHHHHHHHHHHHHhcccEEEEEEecCCCCCcccccCCcCcceEEEeccccceeeehhhcccceEeecCcEEEEEec
Confidence 45667777788889999999999999999999984 4457 79999999999999999999999999999999988
Q ss_pred ccccccCcccchhhhhhHHHHHHHHHHHHHHHHhhcCCCC
Q psy8428 282 AATRKNDVRVRRTMAVVGLGLVAFFFSVILSIFRSKAHGY 321 (328)
Q Consensus 282 ~~p~~~~~~~~~~~~~~~~~~i~~~fs~l~sif~~K~~~Y 321 (328)
...++..+..|.....++..++.+.|-.-.-..|+|-|||
T Consensus 106 a~~~n~~k~~r~~~~~~g~~~vlls~~ma~vfmrmklpgy 145 (147)
T KOG3356|consen 106 ANAPNIPKLNRFLLLFIGFVCVLLSFFMARVFMRMKLPGY 145 (147)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence 6644433334444455555555555555556789999999
No 75
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.99 E-value=6.5e-10 Score=91.08 Aligned_cols=69 Identities=9% Similarity=0.217 Sum_probs=53.2
Q ss_pred CCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCCh-hhHHHcCCCc--CceEEEecCCC
Q psy8428 65 RNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS-DVFQMLRLNT--APIFMHFPAKG 141 (328)
Q Consensus 65 r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~-~lf~~l~v~s--vP~l~~f~p~g 141 (328)
++.+++|.|+|+ ||++|+.++|.+++.++... .+..|..+|+++++ ...+++++.+ +|++++|.+.|
T Consensus 18 ~~kpVlV~F~a~----WC~~C~~~~~~~~~~~~~~~------~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~G 87 (117)
T cd02959 18 SGKPLMLLIHKT----WCGACKALKPKFAESKEISE------LSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSG 87 (117)
T ss_pred cCCcEEEEEeCC----cCHHHHHHHHHHhhhHHHHh------hcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCC
Confidence 356799999999 99999999999999877543 12345666776654 4457899987 99999998765
Q ss_pred CC
Q psy8428 142 KP 143 (328)
Q Consensus 142 ~~ 143 (328)
+.
T Consensus 88 k~ 89 (117)
T cd02959 88 DV 89 (117)
T ss_pred CC
Confidence 54
No 76
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.98 E-value=2e-09 Score=78.70 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=51.2
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEE
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMH 136 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~ 136 (328)
+++|+++ ||++|+.++|.++++++.. +++.|.++|+++++++.+++|++++|++++
T Consensus 3 v~~f~~~----~C~~C~~~~~~l~~l~~~~-------~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSP----TCPYCPDAVQAANRIAALN-------PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECC----CCCCcHHHHHHHHHHHHhC-------CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 5789999 9999999999999998764 369999999999999999999999999875
No 77
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.89 E-value=8.9e-09 Score=103.81 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=75.5
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEE----------------
Q psy8428 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFF---------------- 111 (328)
Q Consensus 48 VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F---------------- 111 (328)
-+.+.|.+=+...++ ++.+++|.|||+ ||++|+...|+++++++.+.. +++.+
T Consensus 40 ~f~l~D~dG~~v~ls--kGKpVvV~FWAT----WCppCk~emP~L~eL~~e~k~-----~~v~VI~Vs~~~~~~e~~~~~ 108 (521)
T PRK14018 40 TLKTADNRPASVYLK--KDKPTLIKFWAS----WCPLCLSELGETEKWAQDAKF-----SSANLITVASPGFLHEKKDGD 108 (521)
T ss_pred CeEeecCCCceeecc--CCCEEEEEEEcC----CCHHHHHHHHHHHHHHHHhcc-----CCeEEEEEecccccccccHHH
Confidence 344444443444432 456799999999 999999999999999998752 12222
Q ss_pred ------------EEEECcCChhhHHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHH
Q psy8428 112 ------------ILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIA 166 (328)
Q Consensus 112 ------------~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~ 166 (328)
..++.|.+.++.+.|+++++|+.+++.+.|+ ......|..+.+++.++|+
T Consensus 109 ~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGk-----IV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 109 FQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGD-----VQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCe-----EEEEEeCCCCHHHHHHHHH
Confidence 2356677888999999999999988866543 2344467788999999987
No 78
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.89 E-value=3.8e-08 Score=82.07 Aligned_cols=110 Identities=6% Similarity=0.098 Sum_probs=87.7
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHc
Q psy8428 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (328)
Q Consensus 47 ~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l 126 (328)
|.-.++.++.+.++. .++ ..+++| +.+|. .++-+....=+.+++|++|. ++++.|+++|+|+++++.++|
T Consensus 18 g~~~~~~~~~~~~~~-~~~--~~vl~~-~gdp~-r~~E~~D~avvleELa~e~~-----~~~v~~akVDiD~~~~LA~~f 87 (132)
T PRK11509 18 GWTPVSESRLDDWLT-QAP--DGVVLL-SSDPK-RTPEVSDNPVMIGELLREFP-----DYTWQVAIADLEQSEAIGDRF 87 (132)
T ss_pred CCCccccccHHHHHh-CCC--cEEEEe-CCCCC-cCCccccHHHHHHHHHHHhc-----CCceEEEEEECCCCHHHHHHc
Confidence 667788899999974 433 345555 44444 45778889999999999985 246999999999999999999
Q ss_pred CCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCc
Q psy8428 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ 172 (328)
Q Consensus 127 ~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~ 172 (328)
||+++||+++|++| +..+...|..+.+++.+||++.+...
T Consensus 88 gV~siPTLl~FkdG------k~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 88 GVFRFPATLVFTGG------NYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred CCccCCEEEEEECC------EEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 99999999999987 33455557789999999999987644
No 79
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.82 E-value=6e-08 Score=83.17 Aligned_cols=86 Identities=12% Similarity=0.227 Sum_probs=61.1
Q ss_pred EEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC----------ChhhH-HHc---CCCcCceE
Q psy8428 69 AIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE----------GSDVF-QML---RLNTAPIF 134 (328)
Q Consensus 69 vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~----------~~~lf-~~l---~v~svP~l 134 (328)
.++.|||+ ||++|++..|.++++++.|. -++....+|-+. .++.. ..+ ++.++|+.
T Consensus 53 ~lvnFWAs----WCppCr~e~P~L~~l~~~~~------~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt 122 (153)
T TIGR02738 53 ALVFFYQS----TCPYCHQFAPVLKRFSQQFG------LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPAT 122 (153)
T ss_pred EEEEEECC----CChhHHHHHHHHHHHHHHcC------CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeE
Confidence 58999999 99999999999999998873 234444444221 12333 344 89999999
Q ss_pred EEecCCCCCCCCCceeeeecccCHHHHHHHHHhh
Q psy8428 135 MHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 135 ~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
+++.+.|+ ..+....|..+.+++.+.+.+.
T Consensus 123 ~LID~~G~----~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 123 FLVNVNTR----KAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EEEeCCCC----EEEEEeecccCHHHHHHHHHHh
Confidence 99987643 1233445778888888887764
No 80
>PHA02125 thioredoxin-like protein
Probab=98.81 E-value=8.7e-09 Score=77.52 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=45.1
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEE
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFM 135 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~ 135 (328)
+++|||+ ||++|+.++|.+++++ ..++++|.++++++.++++++++||++
T Consensus 2 iv~f~a~----wC~~Ck~~~~~l~~~~------------~~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAE----WCANCKMVKPMLANVE------------YTYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECC----CCHhHHHHHHHHHHHh------------heEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 6899999 9999999999987653 347899999999999999999999998
No 81
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.79 E-value=2.8e-08 Score=82.23 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=59.5
Q ss_pred ChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHH-H--HHHHHHcccccCCCCcEEEEEEECcCChhhHHH---
Q psy8428 52 DGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDE-Y--TIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM--- 125 (328)
Q Consensus 52 ~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pe-f--~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~--- 125 (328)
+++.+++... . +.++++.|+|+ ||++|+.++++ | .++++... ++..++++|.++++++.++
T Consensus 4 ~~eal~~Ak~-~--~KpVll~f~a~----WC~~Ck~me~~~f~~~~V~~~l~------~~fv~VkvD~~~~~~~~~~~~~ 70 (124)
T cd02955 4 GEEAFEKARR-E--DKPIFLSIGYS----TCHWCHVMEHESFEDEEVAAILN------ENFVPIKVDREERPDVDKIYMN 70 (124)
T ss_pred CHHHHHHHHH-c--CCeEEEEEccC----CCHhHHHHHHHccCCHHHHHHHh------CCEEEEEEeCCcCcHHHHHHHH
Confidence 3455555432 3 45799999999 99999999874 3 24555443 3689999999998877653
Q ss_pred -----cCCCcCceEEEecCCCCC
Q psy8428 126 -----LRLNTAPIFMHFPAKGKP 143 (328)
Q Consensus 126 -----l~v~svP~l~~f~p~g~~ 143 (328)
+|+.+.|+++++.|.|++
T Consensus 71 ~~~~~~~~~G~Pt~vfl~~~G~~ 93 (124)
T cd02955 71 AAQAMTGQGGWPLNVFLTPDLKP 93 (124)
T ss_pred HHHHhcCCCCCCEEEEECCCCCE
Confidence 589999999999887654
No 82
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.78 E-value=3.7e-08 Score=74.35 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=54.4
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecCCCCCCCCCcee
Q psy8428 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLD 150 (328)
Q Consensus 71 V~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~ 150 (328)
+.|+|+ ||++|+.+.|.++++++++. .++.|.++| +++...++|+.++|++++ +| + ..
T Consensus 3 i~~~a~----~C~~C~~~~~~~~~~~~e~~------~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G-~-----~~- 60 (76)
T TIGR00412 3 IQIYGT----GCANCQMTEKNVKKAVEELG------IDAEFEKVT---DMNEILEAGVTATPGVAV--DG-E-----LV- 60 (76)
T ss_pred EEEECC----CCcCHHHHHHHHHHHHHHcC------CCeEEEEeC---CHHHHHHcCCCcCCEEEE--CC-E-----EE-
Confidence 678899 99999999999999999885 458887777 344478899999999999 44 1 12
Q ss_pred eeecc-cCHHHHHHHH
Q psy8428 151 IQRVG-YSAEAIVKWI 165 (328)
Q Consensus 151 ~~~~~-~~a~~l~~fl 165 (328)
+ .|. .+.+++.+++
T Consensus 61 ~-~G~~~~~~~l~~~l 75 (76)
T TIGR00412 61 I-MGKIPSKEEIKEIL 75 (76)
T ss_pred E-EeccCCHHHHHHHh
Confidence 2 232 3457777765
No 83
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.76 E-value=7.5e-08 Score=83.12 Aligned_cols=88 Identities=14% Similarity=0.240 Sum_probs=69.8
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECc----------------------CChhhHH
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD----------------------EGSDVFQ 124 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~----------------------~~~~lf~ 124 (328)
..+++.||++ ||++|+...|.+.++++++.+ .++.+..++.+ ++.++.+
T Consensus 62 k~~~l~f~a~----~C~~C~~~~~~l~~~~~~~~~-----~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 132 (173)
T PRK03147 62 KGVFLNFWGT----WCKPCEKEMPYMNELYPKYKE-----KGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVID 132 (173)
T ss_pred CEEEEEEECC----cCHHHHHHHHHHHHHHHHhhc-----CCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHH
Confidence 3588999999 999999999999999999863 24666677654 3467889
Q ss_pred HcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhh
Q psy8428 125 MLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 125 ~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
+++++++|+.+++.++|+. .....|..+.+++.+++++.
T Consensus 133 ~~~v~~~P~~~lid~~g~i-----~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 133 AYGVGPLPTTFLIDKDGKV-----VKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred HcCCCCcCeEEEECCCCcE-----EEEEeCCCCHHHHHHHHHHh
Confidence 9999999999999876532 33335778889999998764
No 84
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.74 E-value=7e-08 Score=90.28 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=67.9
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC---------ChhhHHHcCCCcCceEEE
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE---------GSDVFQMLRLNTAPIFMH 136 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~---------~~~lf~~l~v~svP~l~~ 136 (328)
+.+++++|||+ ||++|+.+.|.++.+++.|. -.+..+.+|-+. +..+.+++||+++|++++
T Consensus 166 ~k~~Lv~F~As----wCp~C~~~~P~L~~la~~yg------~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 166 KKSGLFFFFKS----DCPYCHQQAPILQAFEDRYG------IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred CCeEEEEEECC----CCccHHHHhHHHHHHHHHcC------cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 34689999999 99999999999999999873 234444444321 457899999999999999
Q ss_pred ecCCCCCCCCCceeeeecccCHHHHHHHHHhhcC
Q psy8428 137 FPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (328)
Q Consensus 137 f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~ 170 (328)
+.++++ .......|..+.++|.+.+...+.
T Consensus 236 v~~~~~----~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 236 ADPDPN----QFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EECCCC----EEEEEEeCCCCHHHHHHHHHHHhc
Confidence 998422 112233356788999998876654
No 85
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.73 E-value=4.2e-08 Score=78.62 Aligned_cols=85 Identities=20% Similarity=0.313 Sum_probs=60.0
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHH---HHcccccCCCCcEEEEEEECcCC--------------------hhh
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVA---NSFRYSQMYSNKLFFILVDFDEG--------------------SDV 122 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA---~s~~~~~~~~~~v~F~~vD~~~~--------------------~~l 122 (328)
+.+++++|+++ ||+.|+.+.++..... +... +++.+..+|+++. .++
T Consensus 5 ~k~~v~~F~~~----~C~~C~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 74 (112)
T PF13098_consen 5 GKPIVVVFTDP----WCPYCKKLEKELFPDNDVARYLK------DDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKEL 74 (112)
T ss_dssp SSEEEEEEE-T----T-HHHHHHHHHHHHHHHHHCEEH------CECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHH
T ss_pred CCEEEEEEECC----CCHHHHHHHHHHHHHHHHHHHhh------cCeEEEEEecCCcccccccccccccchhhhHHHHHH
Confidence 45789999999 9999999999998643 3332 3578888888763 368
Q ss_pred HHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHH
Q psy8428 123 FQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 123 f~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl 165 (328)
.+++|+++.|+++++.+.|+ .+....|..++++|.++|
T Consensus 75 ~~~~~v~gtPt~~~~d~~G~-----~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 75 AQRYGVNGTPTIVFLDKDGK-----IVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHTT--SSSEEEECTTTSC-----EEEEEESS--HHHHHHHH
T ss_pred HHHcCCCccCEEEEEcCCCC-----EEEEecCCCCHHHHHhhC
Confidence 99999999999999975443 234445778899998875
No 86
>KOG0913|consensus
Probab=98.65 E-value=9e-09 Score=92.30 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=89.5
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
+.++.+|++|+.+++. + ..+++|.|+ ||+.|+...|+++..|. +.. +-.+..+++|++.||-+..+
T Consensus 24 s~~~~~~eenw~~~l~-g----ewmi~~~ap----~~psc~~~~~~~~~~a~-~s~----dL~v~va~VDvt~npgLsGR 89 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLT-G----EWMIEFGAP----WCPSCSDLIPHLENFAT-VSL----DLGVKVAKVDVTTNPGLSGR 89 (248)
T ss_pred ceeEEecccchhhhhc-h----HHHHHhcCC----CCccccchHHHHhccCC-ccC----CCceeEEEEEEEecccccee
Confidence 3789999999999863 4 368899999 99999999999998884 432 24699999999999999999
Q ss_pred cCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCcc
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI 173 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~i 173 (328)
|-+...|||.+.++| ++.+..+.++..++.+|++.+--..+
T Consensus 90 F~vtaLptIYHvkDG-------eFrrysgaRdk~dfisf~~~r~w~~i 130 (248)
T KOG0913|consen 90 FLVTALPTIYHVKDG-------EFRRYSGARDKNDFISFEEHREWQSI 130 (248)
T ss_pred eEEEecceEEEeecc-------ccccccCcccchhHHHHHHhhhhhcc
Confidence 999999999999987 24444688999999999987654433
No 87
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.61 E-value=2e-07 Score=77.10 Aligned_cols=70 Identities=14% Similarity=0.328 Sum_probs=53.0
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC------------------------hh
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG------------------------SD 121 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~------------------------~~ 121 (328)
+..++|.|||+ ||++|++..|+++++.+.+... .+++.+.-++.+++ ..
T Consensus 18 gk~vll~Fwa~----wC~~C~~~~p~l~~~~~~~~~~---~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T cd03009 18 GKTVGLYFSAS----WCPPCRAFTPKLVEFYEKLKES---GKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSR 90 (131)
T ss_pred CcEEEEEEECC----CChHHHHHhHHHHHHHHHHHhc---CCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHH
Confidence 34699999999 9999999999999999887631 11343444444322 46
Q ss_pred hHHHcCCCcCceEEEecCCCC
Q psy8428 122 VFQMLRLNTAPIFMHFPAKGK 142 (328)
Q Consensus 122 lf~~l~v~svP~l~~f~p~g~ 142 (328)
+.++|+++++|+++++.++|+
T Consensus 91 ~~~~~~v~~~P~~~lid~~G~ 111 (131)
T cd03009 91 LNRTFKIEGIPTLIILDADGE 111 (131)
T ss_pred HHHHcCCCCCCEEEEECCCCC
Confidence 788999999999999987754
No 88
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.59 E-value=1.5e-07 Score=78.16 Aligned_cols=70 Identities=11% Similarity=0.236 Sum_probs=53.0
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC-------------------------h
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG-------------------------S 120 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~-------------------------~ 120 (328)
+..++|.|+|+ ||++|++..|+++++++.+... ..++.+.-++++++ .
T Consensus 17 Gk~vll~F~at----wC~~C~~~~p~l~~l~~~~~~~---~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 89 (132)
T cd02964 17 GKTVGLYFSAS----WCPPCRAFTPKLVEFYEKLKEE---GKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRE 89 (132)
T ss_pred CCEEEEEEECC----CCchHHHHHHHHHHHHHHHhhc---CCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHH
Confidence 44699999999 9999999999999999888531 02344544544432 2
Q ss_pred hhHHHcCCCcCceEEEecCCCC
Q psy8428 121 DVFQMLRLNTAPIFMHFPAKGK 142 (328)
Q Consensus 121 ~lf~~l~v~svP~l~~f~p~g~ 142 (328)
.+.+.|+++++|+.+++.++|+
T Consensus 90 ~~~~~~~v~~iPt~~lid~~G~ 111 (132)
T cd02964 90 LLEKQFKVEGIPTLVVLKPDGD 111 (132)
T ss_pred HHHHHcCCCCCCEEEEECCCCC
Confidence 4567799999999999987654
No 89
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.54 E-value=2.1e-07 Score=72.50 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=52.0
Q ss_pred EEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEE
Q psy8428 69 AIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMH 136 (328)
Q Consensus 69 vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~ 136 (328)
-+..|+++ ||++|+...+.++++++.+ +++.+..+|.++.++++++|||.++|++++
T Consensus 15 ~i~~F~~~----~C~~C~~~~~~~~~l~~~~-------~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 15 NFETYVSL----SCHNCPDVVQALNLMAVLN-------PNIEHEMIDGALFQDEVEERGIMSVPAIFL 71 (89)
T ss_pred EEEEEECC----CCCCcHHHHHHHHHHHHHC-------CCceEEEEEhHhCHHHHHHcCCccCCEEEE
Confidence 46778999 9999999999999999765 369999999999999999999999999975
No 90
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.51 E-value=2.2e-06 Score=75.61 Aligned_cols=86 Identities=9% Similarity=0.011 Sum_probs=61.1
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECc-----------------------CChhh
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD-----------------------EGSDV 122 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~-----------------------~~~~l 122 (328)
+..++|.|||+ ||++|++..|.++++++. ++.+.-++.+ .+.++
T Consensus 68 gk~vvv~Fwat----wC~~C~~e~p~l~~l~~~---------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 134 (185)
T PRK15412 68 GKPVLLNVWAT----WCPTCRAEHQYLNQLSAQ---------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGML 134 (185)
T ss_pred CCEEEEEEECC----CCHHHHHHHHHHHHHHHc---------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccH
Confidence 44699999999 999999999999988642 1333334333 23345
Q ss_pred HHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhc
Q psy8428 123 FQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (328)
Q Consensus 123 f~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t 169 (328)
.++||+.++|+.+++.+.|+. .....|..+.+++.+++++.+
T Consensus 135 ~~~~gv~~~P~t~vid~~G~i-----~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 135 GLDLGVYGAPETFLIDGNGII-----RYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred HHhcCCCcCCeEEEECCCceE-----EEEEecCCCHHHHHHHHHHHH
Confidence 668999999988888766532 233346778888888887654
No 91
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.49 E-value=3.5e-07 Score=79.68 Aligned_cols=96 Identities=11% Similarity=-0.018 Sum_probs=67.0
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHccc------ccCC--------CCcEEEEEEECcCChhhHHHcCCCcC
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRY------SQMY--------SNKLFFILVDFDEGSDVFQMLRLNTA 131 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~------~~~~--------~~~v~F~~vD~~~~~~lf~~l~v~sv 131 (328)
+..+++.||++ ||++|++..|.++++++.-.. +... +..+-|-.+..|.+.++.++|++.++
T Consensus 63 gk~vll~F~a~----wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 63 GKPVLLNVWAS----WCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCEEEEEEECC----cCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 34799999999 999999999999998764100 0000 01122333555667788899999999
Q ss_pred ceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcC
Q psy8428 132 PIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (328)
Q Consensus 132 P~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~ 170 (328)
|+.+++.+.|+. .....|..+.+++.+++.+.++
T Consensus 139 P~~~~id~~G~i-----~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 139 PETFLVDGNGVI-----LYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CeEEEEcCCceE-----EEEEeccCCHHHHHHHHHHHhh
Confidence 988888665432 2223467889999999988764
No 92
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.49 E-value=6.8e-07 Score=76.04 Aligned_cols=73 Identities=14% Similarity=0.203 Sum_probs=53.3
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccC--CCCcEEEEEEECcC-------------------------
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQM--YSNKLFFILVDFDE------------------------- 118 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~--~~~~v~F~~vD~~~------------------------- 118 (328)
+..+++.|||+ ||++|++..|.++++.+.+.+.++ .++++.+.-|+.++
T Consensus 25 gk~vlL~FwAs----WCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~ 100 (146)
T cd03008 25 NRVLLLFFGAV----VSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEF 100 (146)
T ss_pred CCEEEEEEECC----CChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchH
Confidence 45799999999 999999999999998877653210 11234444444442
Q ss_pred ChhhHHHcCCCcCceEEEecCCCC
Q psy8428 119 GSDVFQMLRLNTAPIFMHFPAKGK 142 (328)
Q Consensus 119 ~~~lf~~l~v~svP~l~~f~p~g~ 142 (328)
..++.++|++.++|+.+++.+.|+
T Consensus 101 ~~~l~~~y~v~~iPt~vlId~~G~ 124 (146)
T cd03008 101 RRELEAQFSVEELPTVVVLKPDGD 124 (146)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCc
Confidence 125778899999999999988754
No 93
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.47 E-value=2.9e-06 Score=74.55 Aligned_cols=92 Identities=11% Similarity=0.163 Sum_probs=66.2
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECc----------C-ChhhHHHcCC--CcCc
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD----------E-GSDVFQMLRL--NTAP 132 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~----------~-~~~lf~~l~v--~svP 132 (328)
+|. +|.||++ ||++|++..|+++++++.|. -.+.-..+|-+ + ...+.+.||+ .++|
T Consensus 70 d~~-lV~Fwas----wCp~C~~e~P~L~~l~~~~g------~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iP 138 (181)
T PRK13728 70 DWK-VVLFMQG----HCPYCHQFDPVLKQLAQQYG------FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATP 138 (181)
T ss_pred Hce-EEEEECC----CCHhHHHHHHHHHHHHHHcC------CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCC
Confidence 444 6779999 99999999999999999873 12333333311 1 2346778995 6999
Q ss_pred eEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCc
Q psy8428 133 IFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ 172 (328)
Q Consensus 133 ~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~ 172 (328)
+.+++.+.|+. .+....|..+.+++.+.+.+.++..
T Consensus 139 ttfLId~~G~i----~~~~~~G~~~~~~L~~~I~~ll~~~ 174 (181)
T PRK13728 139 TTFLVNVNTLE----ALPLLQGATDAAGFMARMDTVLQMY 174 (181)
T ss_pred eEEEEeCCCcE----EEEEEECCCCHHHHHHHHHHHHhhh
Confidence 99999876531 2344468889999999998887764
No 94
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.43 E-value=1.1e-06 Score=68.96 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=58.3
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC-----------------------hhhH
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG-----------------------SDVF 123 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~-----------------------~~lf 123 (328)
..++++|+++ ||++|+...|.+.++.+.+.+ +++.++.++.+.+ .++.
T Consensus 20 k~~ll~f~~~----~C~~C~~~~~~l~~~~~~~~~-----~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (116)
T cd02966 20 KVVLVNFWAS----WCPPCRAEMPELEALAKEYKD-----DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELA 90 (116)
T ss_pred CEEEEEeecc----cChhHHHHhHHHHHHHHHhCC-----CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHH
Confidence 4689999999 999999999999999998852 4689999999886 7899
Q ss_pred HHcCCCcCceEEEecCCC
Q psy8428 124 QMLRLNTAPIFMHFPAKG 141 (328)
Q Consensus 124 ~~l~v~svP~l~~f~p~g 141 (328)
+.|++.++|+++++.++|
T Consensus 91 ~~~~~~~~P~~~l~d~~g 108 (116)
T cd02966 91 KAYGVRGLPTTFLIDRDG 108 (116)
T ss_pred HhcCcCccceEEEECCCC
Confidence 999999999999998765
No 95
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.42 E-value=2.5e-06 Score=69.06 Aligned_cols=100 Identities=12% Similarity=0.215 Sum_probs=73.9
Q ss_pred hHHHHHH-cCCCCccEEEEEeeCCCCCCCccchhhHHH-H--HHHHHHcccccCCCCcEEEEEEECcC--ChhhHHHcCC
Q psy8428 55 KYKEYIK-NGPRNYSAIVMFTALAPQRNCHICVSASDE-Y--TIVANSFRYSQMYSNKLFFILVDFDE--GSDVFQMLRL 128 (328)
Q Consensus 55 nf~~~v~-~~~r~y~vvV~ftA~~~~~~C~~C~~~~pe-f--~~vA~s~~~~~~~~~~v~F~~vD~~~--~~~lf~~l~v 128 (328)
+|++.+. ...++..++|+|+++ ||.+|+.+..+ | +.|.+... +...+.++|+++ +.++.+.|++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~----~c~~c~~~~~~vl~~~~v~~~l~------~~~v~~~~d~~~~e~~~~~~~~~~ 74 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSE----DEFDSQVLNRDLWSNESVKEFIR------ENFIFWQCDIDSSEGQRFLQSYKV 74 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecC----CcchHHHHHHHHcCCHHHHHHHH------hCEEEEEecCCCccHHHHHHHhCc
Confidence 4555542 223467899999999 99999998764 2 34444443 358888899984 6789999999
Q ss_pred CcCceEEEecC-CCCCCCCCceeeeecccCHHHHHHHHHhhc
Q psy8428 129 NTAPIFMHFPA-KGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (328)
Q Consensus 129 ~svP~l~~f~p-~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t 169 (328)
.++|++.++.| +|+ ......|..+++++.+-|++..
T Consensus 75 ~~~P~~~~i~~~~g~-----~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 75 DKYPHIAIIDPRTGE-----VLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred cCCCeEEEEeCccCc-----EeEEEcCCCCHHHHHHHHHHHH
Confidence 99999999988 443 2444457788999999887754
No 96
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.40 E-value=1.6e-06 Score=71.19 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=51.6
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHccc--------ccC-------CCCcEEEEEEECcCChhhHHHcCCCc
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRY--------SQM-------YSNKLFFILVDFDEGSDVFQMLRLNT 130 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~--------~~~-------~~~~v~F~~vD~~~~~~lf~~l~v~s 130 (328)
+..++|.|+|+ ||++|++..|+++++++.+.- ... ...++-|..+.+|++.++.+.|++++
T Consensus 25 gk~vvv~F~a~----~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~ 100 (127)
T cd03010 25 GKPYLLNVWAS----WCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG 100 (127)
T ss_pred CCEEEEEEEcC----cCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC
Confidence 34689999999 999999999999999887620 000 01112233455567778999999999
Q ss_pred CceEEEecCCC
Q psy8428 131 APIFMHFPAKG 141 (328)
Q Consensus 131 vP~l~~f~p~g 141 (328)
+|+.+++.+.|
T Consensus 101 ~P~~~~ld~~G 111 (127)
T cd03010 101 VPETFLIDGDG 111 (127)
T ss_pred CCeEEEECCCc
Confidence 99877776554
No 97
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.39 E-value=9.5e-06 Score=66.26 Aligned_cols=113 Identities=13% Similarity=0.241 Sum_probs=80.3
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC-----Ch
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE-----GS 120 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~-----~~ 120 (328)
.|.+.|++-+|++.+. |...++|-|... =|--+-+.+|.++|++-.+ .++++.+|.|-+.+ |.
T Consensus 4 ~G~v~LD~~tFdKvi~---kf~~~LVKFD~a------yPyGeKhd~F~~~A~e~~~---~~~dLLvAeVGikDYGek~N~ 71 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIP---KFKYVLVKFDVA------YPYGEKHDAFKKLAKEASA---SSDDLLVAEVGIKDYGEKENM 71 (126)
T ss_dssp TTSEEESTTHHHHHGG---GSSEEEEEEEES------S--CHHHHHHHHHHHHHHC---C-SSEEEEEEECBSSSS-CCH
T ss_pred Cceeeccceehhheec---cCceEEEEEecc------CCCcchHHHHHHHHHHHhc---CCCceEEEEeCcccccchhHH
Confidence 5789999999999984 345799999765 3456778999999944321 24679999998875 89
Q ss_pred hhHHHcCC--CcCceEEEecCCCCCCCCCceeee-ecccCHHHHHHHHHhhcCCcce
Q psy8428 121 DVFQMLRL--NTAPIFMHFPAKGKPKPSDTLDIQ-RVGYSAEAIVKWIADRTDIQIR 174 (328)
Q Consensus 121 ~lf~~l~v--~svP~l~~f~p~g~~~~~~~~~~~-~~~~~a~~l~~fl~~~t~~~i~ 174 (328)
++.++|++ ++.|.+.+|..+. . +...++ .++.+++.|..|+++++++.+.
T Consensus 72 ~Laery~i~ke~fPv~~LF~~~~--~--~pv~~p~~~~~t~~~l~~fvk~~t~~yig 124 (126)
T PF07912_consen 72 ELAERYKIDKEDFPVIYLFVGDK--E--EPVRYPFDGDVTADNLQRFVKSNTGLYIG 124 (126)
T ss_dssp HHHHHTT-SCCC-SEEEEEESST--T--SEEEE-TCS-S-HHHHHHHHHHTSS--TT
T ss_pred HHHHHhCCCcccCCEEEEecCCC--C--CCccCCccCCccHHHHHHHHHhCCCeeec
Confidence 99999999 6799999999432 1 223322 3568999999999999997653
No 98
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.35 E-value=1.5e-06 Score=87.67 Aligned_cols=99 Identities=11% Similarity=0.187 Sum_probs=74.0
Q ss_pred hHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHH-HHHHHcccccCCCCcEEEEEEECcCC----hhhHHHcCCC
Q psy8428 55 KYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYT-IVANSFRYSQMYSNKLFFILVDFDEG----SDVFQMLRLN 129 (328)
Q Consensus 55 nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~-~vA~s~~~~~~~~~~v~F~~vD~~~~----~~lf~~l~v~ 129 (328)
..++.+. ..|+.+|+++|||. ||-.||++++.-- +.....+ -.++...++|.++| .++-+++|+-
T Consensus 464 ~L~~~la-~~~~~pVmlDfyAd----WCvtCK~~e~~tfsd~~v~~~-----~~~~vlLqaDvT~~~p~~~~lLk~~~~~ 533 (569)
T COG4232 464 ELDQALA-EAKAKPVMLDFYAD----WCVTCKENEKYTFSDPQVQQA-----LQDVVLLQADVTANDPAITALLKRLGVF 533 (569)
T ss_pred HHHHHHH-hCCCCcEEEeeehh----HHHHhHhhhhhccCcHHHHHh-----cCCeEEEEeeecCCCHHHHHHHHHcCCC
Confidence 4556553 45667899999999 9999999988532 2211111 24699999999983 4778999999
Q ss_pred cCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhh
Q psy8428 130 TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 130 svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
++|++++|+++|++. .. ..+-.+++.+.+++++.
T Consensus 534 G~P~~~ff~~~g~e~--~~---l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 534 GVPTYLFFGPQGSEP--EI---LTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCEEEEECCCCCcC--cC---CcceecHHHHHHHHHHh
Confidence 999999999875432 11 24778999999999875
No 99
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.33 E-value=1e-05 Score=70.00 Aligned_cols=120 Identities=15% Similarity=0.306 Sum_probs=90.2
Q ss_pred hHHHHHHHHhhhhCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEE
Q psy8428 32 LGDRVLHLSEMNAKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFF 111 (328)
Q Consensus 32 ~~~~~~~L~~l~~~~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F 111 (328)
..+.+.+..+...-..|.++|++|++++. ++++ ..++++|... .......+...++.+|+++. +++.|
T Consensus 63 ~~~~l~~fI~~~~~P~v~~~t~~n~~~~~-~~~~-~~~~~~~~~~----~~~~~~~~~~~l~~~a~~~~------~~~~f 130 (184)
T PF13848_consen 63 TPEELKKFIKKNSFPLVPELTPENFEKLF-SSPK-PPVLILFDNK----DNESTEAFKKELQDIAKKFK------GKINF 130 (184)
T ss_dssp SHHHHHHHHHHHSSTSCEEESTTHHHHHH-STSS-EEEEEEEETT----THHHHHHHHHHHHHHHHCTT------TTSEE
T ss_pred CHHHHHHHHHHhccccccccchhhHHHHh-cCCC-ceEEEEEEcC----CchhHHHHHHHHHHHHHhcC------CeEEE
Confidence 45555555554444569999999999986 3433 2356666555 56668899999999999986 57999
Q ss_pred EEEECcCChhhHHHcCCC--cCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHh
Q psy8428 112 ILVDFDEGSDVFQMLRLN--TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (328)
Q Consensus 112 ~~vD~~~~~~lf~~l~v~--svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~ 167 (328)
+.+|.+..+++.+.+|++ .+|++.++.+... ..+-...+..+.+.+.+|+++
T Consensus 131 ~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~----~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 131 VYVDADDFPRLLKYFGIDEDDLPALVIFDSNKG----KYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEEETTTTHHHHHHTTTTTSSSSEEEEEETTTS----EEEE--SSCGCHHHHHHHHHH
T ss_pred EEeehHHhHHHHHHcCCCCccCCEEEEEECCCC----cEEcCCCCCCCHHHHHHHhcC
Confidence 999999999999999999 9999999986521 111223567889999999974
No 100
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.32 E-value=2.8e-06 Score=79.21 Aligned_cols=109 Identities=9% Similarity=0.170 Sum_probs=77.1
Q ss_pred CeEEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 47 AVLRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 47 ~VI~L~~-~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
.|.++++ +.|-+.+...+++-.|||.||-+ .++.|+.+...++.+|+.|. .+.|+++..+..+ ....
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~----~~~~C~~mn~~L~~LA~kyp-------~vKFvkI~a~~~~-~~~~ 193 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEP----GFPRCEIMNSCLECLARKYP-------EVKFVKIRASKCP-ASEN 193 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-T----TSCCHHHHHHHHHHHHHH-T-------TSEEEEEEECGCC-TTTT
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeC----CCchHHHHHHHHHHHHHhCC-------ceEEEEEehhccC-cccC
Confidence 4899975 78888875445567799999999 99999999999999999985 6999999998876 7788
Q ss_pred cCCCcCceEEEecCCCCCCCC--CceeeeecccCHHHHHHHHHhh
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPS--DTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~--~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
|....+|++++|+.| ..... .-.+.....++++++..||.++
T Consensus 194 f~~~~LPtllvYk~G-~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 194 FPDKNLPTLLVYKNG-DLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp S-TTC-SEEEEEETT-EEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CcccCCCEEEEEECC-EEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 999999999999976 21000 0011112246789999999876
No 101
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.32 E-value=3.7e-06 Score=68.29 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=57.7
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHccc-----ccC---------CCCcEEEEEEECcCChhhHHHcCCCcCc
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRY-----SQM---------YSNKLFFILVDFDEGSDVFQMLRLNTAP 132 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~-----~~~---------~~~~v~F~~vD~~~~~~lf~~l~v~svP 132 (328)
-.+++.|+++ ||++|+.+.|.++++++++.- +.. ...++.|- +-.+++.++.++|++.++|
T Consensus 21 k~~vl~F~~~----~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~i~~~P 95 (123)
T cd03011 21 KPVLVYFWAT----WCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFP-VINDPDGVISARWGVSVTP 95 (123)
T ss_pred CEEEEEEECC----cChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCcc-EEECCCcHHHHhCCCCccc
Confidence 3588999999 999999999999999887421 000 00011221 2224567899999999999
Q ss_pred eEEEecCCCCCCCCCceeeeecccCHHHHHH
Q psy8428 133 IFMHFPAKGKPKPSDTLDIQRVGYSAEAIVK 163 (328)
Q Consensus 133 ~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~ 163 (328)
+++++.++| . .....|-.+.+++.+
T Consensus 96 ~~~vid~~g-i-----~~~~~g~~~~~~~~~ 120 (123)
T cd03011 96 AIVIVDPGG-I-----VFVTTGVTSEWGLRL 120 (123)
T ss_pred EEEEEcCCC-e-----EEEEeccCCHHHHHh
Confidence 999998874 2 122235556666654
No 102
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.29 E-value=4.9e-06 Score=78.86 Aligned_cols=120 Identities=14% Similarity=0.248 Sum_probs=78.4
Q ss_pred hhhhCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhh---HHHHHHHHHHcccccCCCCcEEEEEEECc
Q psy8428 41 EMNAKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSA---SDEYTIVANSFRYSQMYSNKLFFILVDFD 117 (328)
Q Consensus 41 ~l~~~~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~---~pef~~vA~s~~~~~~~~~~v~F~~vD~~ 117 (328)
+.-.++.|+.||..||++.++ .|.+++.++-.++.-.=..=+++ +-..+..|+-.. +..+-|+.||..
T Consensus 29 ~YDGkDRVi~LneKNfk~~lK----kyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE-----~~gigfg~VD~~ 99 (383)
T PF01216_consen 29 EYDGKDRVIDLNEKNFKRALK----KYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLE-----DKGIGFGMVDSK 99 (383)
T ss_dssp S-SSS--CEEE-TTTHHHHHH----H-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCG-----GCTEEEEEEETT
T ss_pred cCCCccceEEcchhHHHHHHH----hhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhcc-----ccCcceEEeccH
Confidence 344467899999999999875 45666544433222111112222 334555666554 357999999999
Q ss_pred CChhhHHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCcceee
Q psy8428 118 EGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQIRVF 176 (328)
Q Consensus 118 ~~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~i~i~ 176 (328)
+..++++++|+.-.+++.+|+.+ ..+++ .|.++++.+++||-+.+.-++++.
T Consensus 100 Kd~klAKKLgv~E~~SiyVfkd~------~~IEy-dG~~saDtLVeFl~dl~edPVeiI 151 (383)
T PF01216_consen 100 KDAKLAKKLGVEEEGSIYVFKDG------EVIEY-DGERSADTLVEFLLDLLEDPVEII 151 (383)
T ss_dssp TTHHHHHHHT--STTEEEEEETT------EEEEE--S--SHHHHHHHHHHHHSSSEEEE
T ss_pred HHHHHHHhcCccccCcEEEEECC------cEEEe-cCccCHHHHHHHHHHhcccchhhh
Confidence 99999999999999999999987 33454 378999999999999888777543
No 103
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.27 E-value=8.5e-07 Score=67.63 Aligned_cols=63 Identities=21% Similarity=0.319 Sum_probs=48.5
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHH---HHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecC
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEY---TIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPA 139 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef---~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p 139 (328)
+.+++|+|+|+ ||+.|+.++.++ ..+.+.+. ++....++|.++...-.+ +.-+++|+++++.|
T Consensus 17 ~kpvlv~f~a~----wC~~C~~l~~~~~~~~~v~~~~~------~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 17 GKPVLVDFGAD----WCPPCKKLEREVFSDPEVQEALN------KNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLDP 82 (82)
T ss_dssp TSEEEEEEETT----TTHHHHHHHHHTTTSHHHHHHHH------HCSEEEEEETTTHHHHHH-HHHCSSSEEEEEET
T ss_pred CCCEEEEEECC----CCHhHHHHHHHHcCCHHHHHHHH------CCEEEEEEEcCCCChhHH-hCCccCCEEEEeCC
Confidence 56799999999 999999999988 56665454 469999999988543222 22267999999875
No 104
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.26 E-value=4.4e-06 Score=91.59 Aligned_cols=91 Identities=13% Similarity=0.225 Sum_probs=69.2
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEE---C------------------------cC
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVD---F------------------------DE 118 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD---~------------------------~~ 118 (328)
+..++|.|||+ ||++|+...|+++++++.|.. +++.+..+. + |.
T Consensus 420 GK~vll~FWAs----WC~pC~~e~P~L~~l~~~y~~-----~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~ 490 (1057)
T PLN02919 420 GKVVILDFWTY----CCINCMHVLPDLEFLEKKYKD-----QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDG 490 (1057)
T ss_pred CCEEEEEEECC----cChhHHhHhHHHHHHHHHcCC-----CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECC
Confidence 45799999999 999999999999999998852 235555552 1 23
Q ss_pred ChhhHHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcC
Q psy8428 119 GSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (328)
Q Consensus 119 ~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~ 170 (328)
+.++.++|+++++|+.+++.+.|+. .....|....+++.+++++.+.
T Consensus 491 ~~~~~~~~~V~~iPt~ilid~~G~i-----v~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 491 DMYLWRELGVSSWPTFAVVSPNGKL-----IAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred chHHHHhcCCCccceEEEECCCCeE-----EEEEecccCHHHHHHHHHHHHH
Confidence 4568889999999999999766532 3334566778888998887643
No 105
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.23 E-value=7.5e-06 Score=63.54 Aligned_cols=66 Identities=18% Similarity=0.416 Sum_probs=49.2
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC-------------------------Chhh
Q psy8428 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE-------------------------GSDV 122 (328)
Q Consensus 68 ~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~-------------------------~~~l 122 (328)
.++++|||+ ||++|++..|...++.+.+.+ ++++.|.-|..|+ ..++
T Consensus 3 ~~ll~fwa~----~c~~c~~~~~~l~~l~~~~~~----~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 74 (95)
T PF13905_consen 3 PVLLYFWAS----WCPPCKKELPKLKELYKKYKK----KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSEL 74 (95)
T ss_dssp EEEEEEE-T----TSHHHHHHHHHHHHHHHHHTT----TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHH
T ss_pred EEEEEEECC----CCHHHHHHHHHHHHHHHHhCC----CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHH
Confidence 588999999 999999999999999999872 1344444444433 2457
Q ss_pred HHHcCCCcCceEEEecCCC
Q psy8428 123 FQMLRLNTAPIFMHFPAKG 141 (328)
Q Consensus 123 f~~l~v~svP~l~~f~p~g 141 (328)
.+.|+++++|++++..+.|
T Consensus 75 ~~~~~i~~iP~~~lld~~G 93 (95)
T PF13905_consen 75 LKKYGINGIPTLVLLDPDG 93 (95)
T ss_dssp HHHTT-TSSSEEEEEETTS
T ss_pred HHHCCCCcCCEEEEECCCC
Confidence 7888999999999998764
No 106
>KOG0914|consensus
Probab=98.22 E-value=5.3e-06 Score=73.89 Aligned_cols=83 Identities=22% Similarity=0.259 Sum_probs=71.0
Q ss_pred eEEe-ChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHc
Q psy8428 48 VLRF-DGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (328)
Q Consensus 48 VI~L-~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l 126 (328)
+-.+ |++.+++.+ ++++.-++++.|.|. |-+.|+.+.|.|.+++..|.. +.+.|+++|+..-+++.++|
T Consensus 126 ikyf~~~q~~deel-~rnk~t~WlIeFfa~----ws~~Cv~~spvfaeLS~kyn~-----~~lkFGkvDiGrfpd~a~kf 195 (265)
T KOG0914|consen 126 IKYFTNMQLEDEEL-DRNKRTYWLIEFFAC----WSPKCVRFSPVFAELSIKYNN-----NLLKFGKVDIGRFPDVAAKF 195 (265)
T ss_pred eeeecchhhHHHHh-ccCCceEEEEEEEee----cChhhcccccccHHHHHHhCC-----CCCcccceeeccCcChHHhe
Confidence 5566 667777776 456666688888899 999999999999999999863 56999999999999999999
Q ss_pred CCC------cCceEEEecCC
Q psy8428 127 RLN------TAPIFMHFPAK 140 (328)
Q Consensus 127 ~v~------svP~l~~f~p~ 140 (328)
+|+ ..||+.+|..|
T Consensus 196 ris~s~~srQLPT~ilFq~g 215 (265)
T KOG0914|consen 196 RISLSPGSRQLPTYILFQKG 215 (265)
T ss_pred eeccCcccccCCeEEEEccc
Confidence 997 48999999987
No 107
>smart00594 UAS UAS domain.
Probab=98.15 E-value=1.6e-05 Score=65.33 Aligned_cols=103 Identities=13% Similarity=0.181 Sum_probs=69.7
Q ss_pred hhhHHHHHHcC-CCCccEEEEEeeCCCCCCCccchhhHHHH---HHHHHHcccccCCCCcEEEEEEECcC--ChhhHHHc
Q psy8428 53 GQKYKEYIKNG-PRNYSAIVMFTALAPQRNCHICVSASDEY---TIVANSFRYSQMYSNKLFFILVDFDE--GSDVFQML 126 (328)
Q Consensus 53 ~~nf~~~v~~~-~r~y~vvV~ftA~~~~~~C~~C~~~~pef---~~vA~s~~~~~~~~~~v~F~~vD~~~--~~~lf~~l 126 (328)
..+|++.+... .++..++|+|+++ ||..|+.+.-+. ++|.+... ++..+..+|+++ +.++..+|
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~----~c~~c~~~~r~vl~~~~V~~~i~------~~fv~~~~dv~~~eg~~l~~~~ 82 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQ----DSPDSQVFNRDVLCNEAVKSLIR------ENFIFWQVDVDTSEGQRVSQFY 82 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCC----CCchHHHHHHHHccCHHHHHHHH------cCEEEEEecCCChhHHHHHHhc
Confidence 34566655322 2345799999999 999999987642 22333222 358888889876 67899999
Q ss_pred CCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHH
Q psy8428 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 127 ~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl 165 (328)
++++.|++.++.|.+............|..++++++++|
T Consensus 83 ~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 83 KLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 999999999998764211111122234667889998876
No 108
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.13 E-value=4.4e-06 Score=66.94 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=41.6
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEE-E--CcCChhhHHHcCCCcCceEE
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILV-D--FDEGSDVFQMLRLNTAPIFM 135 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~v-D--~~~~~~lf~~l~v~svP~l~ 135 (328)
..+++.||++ ||++|++..|.++++++.+. +++.+..+ | .++..+..+++++.+.|++.
T Consensus 22 k~vvl~F~~~----wC~~C~~~~p~l~~~~~~~~------~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 22 RPTLLFFLSP----TCPVCKKLLPVIRSIARAEA------DWLDVVLASDGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred CeEEEEEECC----CCcchHhHhHHHHHHHHHhc------CCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence 4689999999 99999999999999988764 23333333 2 22345667777777777653
No 109
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.04 E-value=1.6e-05 Score=57.95 Aligned_cols=69 Identities=22% Similarity=0.389 Sum_probs=52.3
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChh----hHHHcCCCcCceEEEecCCCCCCC
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD----VFQMLRLNTAPIFMHFPAKGKPKP 145 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~----lf~~l~v~svP~l~~f~p~g~~~~ 145 (328)
+.+|+++ ||++|+..++.+++ .++-+..+|++++++ +.+.+++.++|++.+. + +
T Consensus 2 i~lf~~~----~C~~C~~~~~~l~~------------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~-~--- 59 (74)
T TIGR02196 2 VKVYTTP----WCPPCKKAKEYLTS------------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H-K--- 59 (74)
T ss_pred EEEEcCC----CChhHHHHHHHHHH------------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C-E---
Confidence 5689999 99999999887754 147788899988654 4567999999999975 3 1
Q ss_pred CCceeeeecccCHHHHHHHHH
Q psy8428 146 SDTLDIQRVGYSAEAIVKWIA 166 (328)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fl~ 166 (328)
. ..|.+.+++.+|++
T Consensus 60 --~----~~g~~~~~i~~~i~ 74 (74)
T TIGR02196 60 --I----IVGFDPEKLDQLLE 74 (74)
T ss_pred --E----EeeCCHHHHHHHhC
Confidence 1 24467888888863
No 110
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.02 E-value=3.9e-05 Score=67.88 Aligned_cols=87 Identities=14% Similarity=0.214 Sum_probs=59.1
Q ss_pred CCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEE-------------C-----cCChhhHHHc
Q psy8428 65 RNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVD-------------F-----DEGSDVFQML 126 (328)
Q Consensus 65 r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD-------------~-----~~~~~lf~~l 126 (328)
++.++++.|||+ ||++|++..|.++++.+.+. .++.++..| + ....++.++|
T Consensus 73 ~gk~vvl~F~at----wCp~C~~~lp~l~~~~~~~~------~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y 142 (189)
T TIGR02661 73 PGRPTLLMFTAP----SCPVCDKLFPIIKSIARAEE------TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAF 142 (189)
T ss_pred CCCEEEEEEECC----CChhHHHHHHHHHHHHHhcC------CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhc
Confidence 345689999999 99999999999999886542 234444311 1 1246788999
Q ss_pred CCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHh
Q psy8428 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (328)
Q Consensus 127 ~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~ 167 (328)
+++++|+.+++.+.|+. .........+++.+.+++
T Consensus 143 ~v~~~P~~~lID~~G~I------~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 143 QVGKIPYGVLLDQDGKI------RAKGLTNTREHLESLLEA 177 (189)
T ss_pred cCCccceEEEECCCCeE------EEccCCCCHHHHHHHHHH
Confidence 99999999998776532 111112345667777654
No 111
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.00 E-value=2.2e-05 Score=53.89 Aligned_cols=60 Identities=20% Similarity=0.326 Sum_probs=50.0
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHH---HcCCCcCceEEEecCC
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQ---MLRLNTAPIFMHFPAK 140 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~---~l~v~svP~l~~f~p~ 140 (328)
+++|+++ ||++|+++.+.++++ +.. .+++.+..+|.++..+..+ .+++.++|+++++.++
T Consensus 1 l~~~~~~----~c~~c~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAP----WCPFCQALRPVLAEL-ALL------NKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECC----CChhHHhhhhHHHHH-Hhh------CCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 3678888 999999999999998 222 2579999999999776554 8999999999999875
No 112
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.99 E-value=3.6e-05 Score=63.21 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=50.1
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEEC---------------------------cCC
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDF---------------------------DEG 119 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~---------------------------~~~ 119 (328)
..+++.|+++ ||++|+...|.++++.+.+.. .++.+.-++. |..
T Consensus 24 k~vvl~F~a~----~C~~C~~~~p~l~~l~~~~~~-----~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~ 94 (126)
T cd03012 24 KVVLLDFWTY----CCINCLHTLPYLTDLEQKYKD-----DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDND 94 (126)
T ss_pred CEEEEEEECC----CCccHHHHHHHHHHHHHHcCc-----CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCc
Confidence 3689999999 999999999999999999863 2344444422 223
Q ss_pred hhhHHHcCCCcCceEEEecCCCC
Q psy8428 120 SDVFQMLRLNTAPIFMHFPAKGK 142 (328)
Q Consensus 120 ~~lf~~l~v~svP~l~~f~p~g~ 142 (328)
.++.+.|+++++|+.+++.+.|+
T Consensus 95 ~~~~~~~~v~~~P~~~vid~~G~ 117 (126)
T cd03012 95 YATWRAYGNQYWPALYLIDPTGN 117 (126)
T ss_pred hHHHHHhCCCcCCeEEEECCCCc
Confidence 45677788889999999876543
No 113
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.98 E-value=5.8e-05 Score=62.91 Aligned_cols=90 Identities=6% Similarity=0.076 Sum_probs=53.9
Q ss_pred CCccEEEEEeeCCCCCCCccchhhHHHH---HHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecCCC
Q psy8428 65 RNYSAIVMFTALAPQRNCHICVSASDEY---TIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKG 141 (328)
Q Consensus 65 r~y~vvV~ftA~~~~~~C~~C~~~~pef---~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~g 141 (328)
++.+++|+|++. ||++|+.++.++ .++++... ++....++|.+....-....+ +.+|+++++.+.|
T Consensus 22 ~~Kpvmv~f~sd----wC~~Ck~l~k~~f~~~eV~~~l~------~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g 90 (130)
T cd02960 22 SNKPLMVIHHLE----DCPHSQALKKAFAEHKEIQKLAQ------EDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSL 90 (130)
T ss_pred CCCeEEEEEeCC----cCHhHHHHHHHhhCCHHHHHHHH------hCeEEEEEEeccCCCCcCccC-cccCeEEEECCCC
Confidence 356799999999 999999999864 23333222 245556777653211111234 6899999998876
Q ss_pred CCCCC-------CceeeeecccCHHHHHHHHHh
Q psy8428 142 KPKPS-------DTLDIQRVGYSAEAIVKWIAD 167 (328)
Q Consensus 142 ~~~~~-------~~~~~~~~~~~a~~l~~fl~~ 167 (328)
+.... ..|.. .+.+.+++++-+++
T Consensus 91 ~vi~~i~Gy~~~~~~~y--~~~~~~~~~~~m~~ 121 (130)
T cd02960 91 TVRADITGRYSNRLYTY--EPADIPLLIENMKK 121 (130)
T ss_pred CCcccccccccCcccee--CcCcHHHHHHHHHH
Confidence 43211 12222 24456666666554
No 114
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.92 E-value=6.4e-05 Score=61.71 Aligned_cols=81 Identities=15% Similarity=0.318 Sum_probs=52.4
Q ss_pred hhHHHHHHcC-CCCccEEEEEeeCC---CCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC-----Ch-hhH
Q psy8428 54 QKYKEYIKNG-PRNYSAIVMFTALA---PQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE-----GS-DVF 123 (328)
Q Consensus 54 ~nf~~~v~~~-~r~y~vvV~ftA~~---~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~-----~~-~lf 123 (328)
++|.+.+.+. ..+..+.++|+++. .+-||+.|+..+|..+++-+.-. ++..|..+.+.+ +| ..|
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~------~~~~lv~v~VG~r~~Wkdp~n~f 79 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP------ENARLVYVEVGDRPEWKDPNNPF 79 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S------TTEEEEEEE---HHHHC-TTSHH
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC------CCceEEEEEcCCHHHhCCCCCCc
Confidence 4566666431 23467889999764 46799999999999999876632 468888888854 22 367
Q ss_pred HH---cCCCcCceEEEecCC
Q psy8428 124 QM---LRLNTAPIFMHFPAK 140 (328)
Q Consensus 124 ~~---l~v~svP~l~~f~p~ 140 (328)
++ ++|++|||++-+..+
T Consensus 80 R~~p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 80 RTDPDLKLKGIPTLIRWETG 99 (119)
T ss_dssp HH--CC---SSSEEEECTSS
T ss_pred eEcceeeeeecceEEEECCC
Confidence 66 999999999999754
No 115
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.88 E-value=9.5e-05 Score=66.94 Aligned_cols=83 Identities=11% Similarity=0.159 Sum_probs=62.8
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECc---------CChhhHHHcCCCcCceEEEec
Q psy8428 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD---------EGSDVFQMLRLNTAPIFMHFP 138 (328)
Q Consensus 68 ~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~---------~~~~lf~~l~v~svP~l~~f~ 138 (328)
+-+++|+.. .|+.|+.+.|.++.+|+.|. =++..+.+|=. .++.+++++||+.+|++++..
T Consensus 122 ~gL~~F~~~----~C~~C~~~~pil~~~~~~yg------~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~ 191 (215)
T PF13728_consen 122 YGLFFFYRS----DCPYCQQQAPILQQFADKYG------FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVN 191 (215)
T ss_pred eEEEEEEcC----CCchhHHHHHHHHHHHHHhC------CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEE
Confidence 467888888 99999999999999999984 23555555511 367899999999999999998
Q ss_pred CCCCCCCCCceeeeecccCHHHHHHH
Q psy8428 139 AKGKPKPSDTLDIQRVGYSAEAIVKW 164 (328)
Q Consensus 139 p~g~~~~~~~~~~~~~~~~a~~l~~f 164 (328)
+++. +.+.+..|-.+.++|.+-
T Consensus 192 ~~~~----~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 192 PNTK----KWYPVSQGFMSLDELEDR 213 (215)
T ss_pred CCCC----eEEEEeeecCCHHHHHHh
Confidence 8731 234444566778887764
No 116
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.87 E-value=4.2e-05 Score=59.14 Aligned_cols=65 Identities=18% Similarity=0.314 Sum_probs=57.4
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECc-CChhhHHHcC--CCcCceEEEecCC
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD-EGSDVFQMLR--LNTAPIFMHFPAK 140 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~-~~~~lf~~l~--v~svP~l~~f~p~ 140 (328)
+..+++.|+++ ||++|+...|.++++++.+. ..+.+..+|.. .+++....++ +..+|++..+.++
T Consensus 32 ~~~~~v~f~~~----~C~~C~~~~~~l~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 99 (127)
T COG0526 32 GKPVLVDFWAP----WCPPCRAEAPLLEELAEEYG------GDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDG 99 (127)
T ss_pred CceEEEEEEcC----cCHHHHhhchhHHHHHHHhc------CCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCc
Confidence 44677888899 99999999999999999885 26899999997 7899999999 9999999988776
No 117
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.73 E-value=8.7e-05 Score=54.92 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=40.7
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH-----cCCCcCceEEEecCC
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM-----LRLNTAPIFMHFPAK 140 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~-----l~v~svP~l~~f~p~ 140 (328)
+++|+++ ||++|+.+++.+++.. +-|-.+|++++++..+. ++..++|++ ++..|
T Consensus 2 v~ly~~~----~C~~C~~~~~~L~~~~------------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g 60 (77)
T TIGR02200 2 ITVYGTT----WCGYCAQLMRTLDKLG------------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADG 60 (77)
T ss_pred EEEEECC----CChhHHHHHHHHHHcC------------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCC
Confidence 5689999 9999999999876553 33446888887666555 389999997 46554
No 118
>KOG3425|consensus
Probab=97.71 E-value=0.00015 Score=58.88 Aligned_cols=81 Identities=16% Similarity=0.274 Sum_probs=57.7
Q ss_pred hhHHHHHHcCCCCccEEEEEeeCC-C---CCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC-------hhh
Q psy8428 54 QKYKEYIKNGPRNYSAIVMFTALA-P---QRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG-------SDV 122 (328)
Q Consensus 54 ~nf~~~v~~~~r~y~vvV~ftA~~-~---~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~-------~~l 122 (328)
+.|++.+.+-..+..+.++|+++. + |-||+.|...+|.+.+.-+.. ..++.|..+|+.+- ...
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a------p~~~~~v~v~VG~rp~Wk~p~n~F 86 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA------PEDVHFVHVYVGNRPYWKDPANPF 86 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC------CCceEEEEEEecCCCcccCCCCcc
Confidence 345555532212234889999987 3 789999999999999887733 25799999999862 233
Q ss_pred HHHcCC-CcCceEEEecCC
Q psy8428 123 FQMLRL-NTAPIFMHFPAK 140 (328)
Q Consensus 123 f~~l~v-~svP~l~~f~p~ 140 (328)
=...++ +.+||++-+..+
T Consensus 87 R~d~~~lt~vPTLlrw~~~ 105 (128)
T KOG3425|consen 87 RKDPGILTAVPTLLRWKRQ 105 (128)
T ss_pred ccCCCceeecceeeEEcCc
Confidence 344555 999999999743
No 119
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.67 E-value=0.00016 Score=55.16 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=59.3
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecCCCCCCCCCce
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTL 149 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~ 149 (328)
+++||.+ +|+.|.+++...+.++.. .++.+-.+|+++++++.++|+. .||.+.+=.+.+. .+ -
T Consensus 2 l~l~~k~----~C~LC~~a~~~L~~~~~~--------~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~-~~---~ 64 (81)
T PF05768_consen 2 LTLYTKP----GCHLCDEAKEILEEVAAE--------FPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQF-KE---Q 64 (81)
T ss_dssp EEEEE-S----SSHHHHHHHHHHHHCCTT--------STCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGG-CT---S
T ss_pred EEEEcCC----CCChHHHHHHHHHHHHhh--------cCceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccc-cc---c
Confidence 6789999 999999999988876543 3588999999999999999996 7999776543211 11 1
Q ss_pred eeeecccCHHHHHHHHH
Q psy8428 150 DIQRVGYSAEAIVKWIA 166 (328)
Q Consensus 150 ~~~~~~~~a~~l~~fl~ 166 (328)
....+..+.+++.+||+
T Consensus 65 ~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 65 EELKWRFDEEQLRAWLE 81 (81)
T ss_dssp EEEESSB-HHHHHHHHH
T ss_pred ceeCCCCCHHHHHHHhC
Confidence 22246789999999985
No 120
>KOG1672|consensus
Probab=97.66 E-value=0.0005 Score=60.47 Aligned_cols=101 Identities=16% Similarity=0.231 Sum_probs=78.4
Q ss_pred eEEeChh-hHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHc
Q psy8428 48 VLRFDGQ-KYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (328)
Q Consensus 48 VI~L~~~-nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l 126 (328)
.-++.++ +|-+.++.++ -||+-||-+ .-..|+-+...++.+|+.+- .-.|.+||.+..|=++.++
T Consensus 68 y~ev~~Ekdf~~~~~kS~---kVVcHFY~~----~f~RCKimDkhLe~LAk~h~-------eTrFikvnae~~PFlv~kL 133 (211)
T KOG1672|consen 68 YEEVASEKDFFEEVKKSE---KVVCHFYRP----EFFRCKIMDKHLEILAKRHV-------ETRFIKVNAEKAPFLVTKL 133 (211)
T ss_pred EEEeccHHHHHHHhhcCc---eEEEEEEcC----CCcceehHHHHHHHHHHhcc-------cceEEEEecccCceeeeee
Confidence 7778754 6666665443 499999999 77889999999999999875 4799999999999999999
Q ss_pred CCCcCceEEEecCCCCCCCCCceeeee--------cccCHHHHHHHHHhh
Q psy8428 127 RLNTAPIFMHFPAKGKPKPSDTLDIQR--------VGYSAEAIVKWIADR 168 (328)
Q Consensus 127 ~v~svP~l~~f~p~g~~~~~~~~~~~~--------~~~~a~~l~~fl~~~ 168 (328)
+|+-+|++.+|+.|. ..++.. .+++.+.|..-|.+.
T Consensus 134 ~IkVLP~v~l~k~g~------~~D~iVGF~dLGnkDdF~te~LE~rL~~S 177 (211)
T KOG1672|consen 134 NIKVLPTVALFKNGK------TVDYVVGFTDLGNKDDFTTETLENRLAKS 177 (211)
T ss_pred eeeEeeeEEEEEcCE------EEEEEeeHhhcCCCCcCcHHHHHHHHhhc
Confidence 999999999999872 122211 235667777666554
No 121
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.63 E-value=0.00034 Score=60.47 Aligned_cols=95 Identities=14% Similarity=0.208 Sum_probs=64.0
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC----------------------------
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE---------------------------- 118 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~---------------------------- 118 (328)
..++++|+++ ||+.|....|++.++.+.+.+ +++.|.-+..+.
T Consensus 26 k~~ll~f~~t----~Cp~c~~~~~~l~~l~~~~~~-----~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D 96 (171)
T cd02969 26 KALVVMFICN----HCPYVKAIEDRLNRLAKEYGA-----KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLD 96 (171)
T ss_pred CEEEEEEECC----CCccHHHHHHHHHHHHHHHhh-----CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEEC
Confidence 3689999999 999999999999999998862 346666665542
Q ss_pred -ChhhHHHcCCCcCceEEEecCCCCCCCCCceeee----ecccCHHHHHHHHHhhcC
Q psy8428 119 -GSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQ----RVGYSAEAIVKWIADRTD 170 (328)
Q Consensus 119 -~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~----~~~~~a~~l~~fl~~~t~ 170 (328)
..++.+.|++.+.|+.+++.++|+..-...++-. ....+.+++.+-|++.+.
T Consensus 97 ~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 97 ETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred CchHHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 2356778999999999999877543100001100 122355667777766543
No 122
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.54 E-value=0.00016 Score=54.49 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=41.2
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCCh-----hhHHHcCCCcCceEE
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS-----DVFQMLRLNTAPIFM 135 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~-----~lf~~l~v~svP~l~ 135 (328)
+++|+++ ||++|+.+++.++++. .. ++..+..+|.++++ .+.+..|..++|+++
T Consensus 1 V~~f~~~----~Cp~C~~~~~~L~~~~--i~------~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~ 59 (84)
T TIGR02180 1 VVVFSKS----YCPYCKKAKEILAKLN--VK------PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF 59 (84)
T ss_pred CEEEECC----CChhHHHHHHHHHHcC--CC------CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 4679999 9999999999998875 21 23667777776543 266677999999985
No 123
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.49 E-value=0.00077 Score=62.52 Aligned_cols=88 Identities=15% Similarity=0.064 Sum_probs=64.4
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC---------ChhhHHHcCCCcCceEEEec
Q psy8428 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE---------GSDVFQMLRLNTAPIFMHFP 138 (328)
Q Consensus 68 ~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~---------~~~lf~~l~v~svP~l~~f~ 138 (328)
+-+++|+.. .|+.|+.+.|..+.+|+.|. =.+..+.+|=.- +...++++|++.+|++++..
T Consensus 152 ~gL~fFy~~----~C~~C~~~apil~~fa~~yg------i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~ 221 (256)
T TIGR02739 152 YGLFFFYRG----KSPISQKMAPVIQAFAKEYG------ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVN 221 (256)
T ss_pred eeEEEEECC----CCchhHHHHHHHHHHHHHhC------CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEE
Confidence 467788888 99999999999999999984 234444444331 24578999999999999998
Q ss_pred CCCCCCCCCceeeeecccCHHHHHHHHHhhc
Q psy8428 139 AKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (328)
Q Consensus 139 p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t 169 (328)
++.+ +.+.+..|-.+.++|.+-+-..+
T Consensus 222 ~~t~----~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 222 PKSQ----KMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred CCCC----cEEEEeeccCCHHHHHHHHHHHH
Confidence 8732 23444456678888887765543
No 124
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.49 E-value=0.0011 Score=53.76 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=75.4
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHH---cccccCCCCcEEEEEEECcCChhhHH
Q psy8428 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANS---FRYSQMYSNKLFFILVDFDEGSDVFQ 124 (328)
Q Consensus 48 VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s---~~~~~~~~~~v~F~~vD~~~~~~lf~ 124 (328)
|-++|.+|++++. +++- +..++|..+ ..=..+.+.++++|++ +. +++.|+.+|.++.....+
T Consensus 1 ~~e~t~e~~~~~~-~~~~--~~~~l~f~~------~~~~~~~~~~~~vAk~~~~~k------gki~Fv~~d~~~~~~~~~ 65 (111)
T cd03072 1 VREITFENAEELT-EEGL--PFLILFHDK------DDLESLKEFKQAVARQLISEK------GAINFLTADGDKFRHPLL 65 (111)
T ss_pred CcccccccHHHHh-cCCC--CeEEEEecc------hHHHHHHHHHHHHHHHHHhcC------ceEEEEEEechHhhhHHH
Confidence 4578999998876 4533 333333322 1136789999999999 75 679999999999877999
Q ss_pred HcCCCc--CceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhc
Q psy8428 125 MLRLNT--APIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (328)
Q Consensus 125 ~l~v~s--vP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t 169 (328)
.+|++. .|.+.+..-.+ . ..|....+..+++.|.+|+++..
T Consensus 66 ~fgl~~~~~P~i~i~~~~~-~---~Ky~~~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 66 HLGKTPADLPVIAIDSFRH-M---YLFPDFEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred HcCCCHhHCCEEEEEcchh-c---CcCCCCccccCHHHHHHHHHHHh
Confidence 999997 99999886542 1 23442345678999999998864
No 125
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.43 E-value=0.00085 Score=59.95 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=41.3
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECc--------C---ChhhHHHcCCCcCce
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD--------E---GSDVFQMLRLNTAPI 133 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~--------~---~~~lf~~l~v~svP~ 133 (328)
..++|.|||+ ||++|+.-.|.++++.+.|.. +.+.+.-++++ + ..+..+++++ +.|.
T Consensus 40 kvvlv~fwAs----wC~~C~~e~p~L~~l~~~~~~-----~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~-~fpv 107 (199)
T PTZ00056 40 KVLMITNSAS----KCGLTKKHVDQMNRLHSVFNP-----LGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI-KYNF 107 (199)
T ss_pred CEEEEEEECC----CCCChHHHHHHHHHHHHHHhc-----CceEEEEecchhccCCCCCCHHHHHHHHHHcCC-Ccee
Confidence 3689999999 999999999999999999863 34666666542 1 3455666665 3454
No 126
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.42 E-value=0.0011 Score=60.84 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=28.2
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcc
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFR 100 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~ 100 (328)
+..+++.|||+ ||++|+.-.|+++++.+.|.
T Consensus 99 GK~vvl~FwAs----wCp~c~~e~p~L~~L~~~~~ 129 (236)
T PLN02399 99 GKVLLIVNVAS----KCGLTSSNYSELSHLYEKYK 129 (236)
T ss_pred CCeEEEEEEcC----CCcchHHHHHHHHHHHHHHh
Confidence 34699999999 99999999999999999886
No 127
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.39 E-value=0.0015 Score=49.01 Aligned_cols=67 Identities=10% Similarity=0.188 Sum_probs=49.0
Q ss_pred CCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecCCCCCCCCCceeeeec-ccCHH
Q psy8428 81 NCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRV-GYSAE 159 (328)
Q Consensus 81 ~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~-~~~a~ 159 (328)
+|+.|..+....+++++.+ ++..-..|.++.+++ ++||+.++|++++ +| +..+ .| .-+.+
T Consensus 9 ~C~~C~~~~~~~~~~~~~~--------~i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng-------~~~~-~G~~p~~~ 69 (76)
T PF13192_consen 9 GCPYCPELVQLLKEAAEEL--------GIEVEIIDIEDFEEI-EKYGVMSVPALVI--NG-------KVVF-VGRVPSKE 69 (76)
T ss_dssp SCTTHHHHHHHHHHHHHHT--------TEEEEEEETTTHHHH-HHTT-SSSSEEEE--TT-------EEEE-ESS--HHH
T ss_pred CCCCcHHHHHHHHHHHHhc--------CCeEEEEEccCHHHH-HHcCCCCCCEEEE--CC-------EEEE-EecCCCHH
Confidence 8999999999999998876 266677788777887 9999999999954 23 2333 24 34578
Q ss_pred HHHHHHH
Q psy8428 160 AIVKWIA 166 (328)
Q Consensus 160 ~l~~fl~ 166 (328)
++.+||+
T Consensus 70 el~~~l~ 76 (76)
T PF13192_consen 70 ELKELLE 76 (76)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 8888874
No 128
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.34 E-value=0.0021 Score=52.10 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=72.5
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcC
Q psy8428 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (328)
Q Consensus 48 VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~ 127 (328)
|.++|.+|+..... . + .++.|..-+-...=..=..+.+.+.++|+.+.. +++.|+.+|.++.....+.||
T Consensus 1 v~~~~~en~~~~~~-~--~--l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~-----gki~Fv~~D~~~~~~~l~~fg 70 (111)
T cd03073 1 VGHRTKDNRAQFTK-K--P--LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD-----RKLNFAVADKEDFSHELEEFG 70 (111)
T ss_pred CCeeccchHHHhcc-C--C--eEEEEEeccccCChhHHHHHHHHHHHHHHHCcC-----CeEEEEEEcHHHHHHHHHHcC
Confidence 35788999988742 3 3 333332110000112246789999999999851 379999999999888999999
Q ss_pred CCc----CceEEEecCCCCCCCCCceeeeeccc-CHHHHHHHHHhh
Q psy8428 128 LNT----APIFMHFPAKGKPKPSDTLDIQRVGY-SAEAIVKWIADR 168 (328)
Q Consensus 128 v~s----vP~l~~f~p~g~~~~~~~~~~~~~~~-~a~~l~~fl~~~ 168 (328)
++. .|++.+....+ ..|.. .+.. +++.|.+|+++.
T Consensus 71 l~~~~~~~P~~~i~~~~~-----~KY~~-~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 71 LDFSGGEKPVVAIRTAKG-----KKYVM-EEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCcccCCCCEEEEEeCCC-----CccCC-CcccCCHHHHHHHHHHh
Confidence 985 99999987432 23442 3456 899999999864
No 129
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.33 E-value=0.0017 Score=57.37 Aligned_cols=91 Identities=14% Similarity=0.046 Sum_probs=58.6
Q ss_pred CCccEEEEEeeCCCCCCCccchhhHHHHHHHHHH-ccc---------ccCCC--C------------cEE--EEEEECcC
Q psy8428 65 RNYSAIVMFTALAPQRNCHICVSASDEYTIVANS-FRY---------SQMYS--N------------KLF--FILVDFDE 118 (328)
Q Consensus 65 r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s-~~~---------~~~~~--~------------~v~--F~~vD~~~ 118 (328)
++...+|.|+|+ ||++|+.-.|..+.+++. +.. +..+. + +.- +..+=.|+
T Consensus 58 ~GKV~lvn~~As----wc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 58 AGKVRVVHHIAG----RTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred CCCEEEEEEEec----CCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 456789999999 999999999999999864 211 00000 0 001 11122334
Q ss_pred ChhhHHHcCCCcCceE-EEecCCCCCCCCCceeeeecccCHHHHHHH
Q psy8428 119 GSDVFQMLRLNTAPIF-MHFPAKGKPKPSDTLDIQRVGYSAEAIVKW 164 (328)
Q Consensus 119 ~~~lf~~l~v~svP~l-~~f~p~g~~~~~~~~~~~~~~~~a~~l~~f 164 (328)
+..+..++|++++|+- +++.+.|+. .....|+.+.+++.+.
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkV-----v~~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKV-----KFVKEGALSDSDIQTV 175 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcE-----EEEEeCCCCHHHHHHH
Confidence 5567889999999888 788776542 2333567777766653
No 130
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.30 E-value=0.0013 Score=54.79 Aligned_cols=110 Identities=12% Similarity=0.247 Sum_probs=79.8
Q ss_pred CeEEeChhhH-HHHHHcCCCCccEEEEEeeCCCCCCCcc-c-hhhHHHHHHHHHHcccccCCCCc-EEEEEEECcCChhh
Q psy8428 47 AVLRFDGQKY-KEYIKNGPRNYSAIVMFTALAPQRNCHI-C-VSASDEYTIVANSFRYSQMYSNK-LFFILVDFDEGSDV 122 (328)
Q Consensus 47 ~VI~L~~~nf-~~~v~~~~r~y~vvV~ftA~~~~~~C~~-C-~~~~pef~~vA~s~~~~~~~~~~-v~F~~vD~~~~~~l 122 (328)
.|++|++++. ++... + ...-++.++-. ...|.. + .+..+.++++|+++. ++ +.|+.+|.++.+.+
T Consensus 3 ~~~~l~~~~~~~~~C~-~-~~~C~i~~l~~---~~d~~~e~~~~~~~~l~~vAk~~k------gk~i~Fv~vd~~~~~~~ 71 (130)
T cd02983 3 EIIELTSEDVFEETCE-E-KQLCIIAFLPH---ILDCQASCRNKYLEILKSVAEKFK------KKPWGWLWTEAGAQLDL 71 (130)
T ss_pred ceEEecCHHHHHhhcc-C-CCeEEEEEcCc---cccCCHHHHHHHHHHHHHHHHHhc------CCcEEEEEEeCcccHHH
Confidence 4889998765 33442 2 34434444321 123444 3 478999999999997 45 99999999999999
Q ss_pred HHHcCCCc--CceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCc
Q psy8428 123 FQMLRLNT--APIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ 172 (328)
Q Consensus 123 f~~l~v~s--vP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~ 172 (328)
.+.|||.+ .|++.++...+ ..|....+..+++.+.+|+++.+.-.
T Consensus 72 ~~~fgl~~~~~P~v~i~~~~~-----~KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 72 EEALNIGGFGYPAMVAINFRK-----MKFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred HHHcCCCccCCCEEEEEeccc-----CccccccCccCHHHHHHHHHHHHcCC
Confidence 99999964 99999998752 14654457889999999999987543
No 131
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.29 E-value=0.0008 Score=48.70 Aligned_cols=68 Identities=16% Similarity=0.354 Sum_probs=46.7
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHc----CCCcCceEEEecCCCCCCC
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML----RLNTAPIFMHFPAKGKPKP 145 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l----~v~svP~l~~f~p~g~~~~ 145 (328)
+++|+++ ||++|+.+.+.+++. ++-+..+|++.+++..+++ +..++|++.+. +
T Consensus 2 v~l~~~~----~c~~c~~~~~~l~~~------------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~--~----- 58 (73)
T cd02976 2 VTVYTKP----DCPYCKATKRFLDER------------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIG--D----- 58 (73)
T ss_pred EEEEeCC----CChhHHHHHHHHHHC------------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEEC--C-----
Confidence 5778999 999999988776641 3566778888766544444 68999999762 2
Q ss_pred CCceeeeecccCHHHHHHHH
Q psy8428 146 SDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fl 165 (328)
. . .++.+.+++.+++
T Consensus 59 -~--~--i~g~~~~~l~~~~ 73 (73)
T cd02976 59 -E--H--LSGFRPDKLRALL 73 (73)
T ss_pred -E--E--EecCCHHHHHhhC
Confidence 1 1 2456667777653
No 132
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.28 E-value=0.00059 Score=56.83 Aligned_cols=79 Identities=14% Similarity=0.271 Sum_probs=47.2
Q ss_pred EEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH---
Q psy8428 49 LRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM--- 125 (328)
Q Consensus 49 I~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~--- 125 (328)
++++++.-+. +.+..+++.++| |+.+ ||+.|...-|.+.++|+.- +++-+-.+.-|+++++-++
T Consensus 26 ~~l~~~~~~~-l~~~~~~~~ilv-i~e~----WCgD~~~~vP~l~kiae~~-------p~i~~~~i~rd~~~el~~~~lt 92 (129)
T PF14595_consen 26 FQLSEEQIEK-LKSIQKPYNILV-ITET----WCGDCARNVPVLAKIAEAN-------PNIEVRIILRDENKELMDQYLT 92 (129)
T ss_dssp HH--HHHHHH-HHT--S-EEEEE-E--T----T-HHHHHHHHHHHHHHHH--------TTEEEEEE-HHHHHHHTTTTTT
T ss_pred cCCCHHHHHH-HHhcCCCcEEEE-EECC----CchhHHHHHHHHHHHHHhC-------CCCeEEEEEecCChhHHHHHHh
Confidence 4566665444 344566775555 7888 9999999999999999864 2466666666777665443
Q ss_pred cCCCcCceEEEecCC
Q psy8428 126 LRLNTAPIFMHFPAK 140 (328)
Q Consensus 126 l~v~svP~l~~f~p~ 140 (328)
.|.++||+++++..+
T Consensus 93 ~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 93 NGGRSIPTFIFLDKD 107 (129)
T ss_dssp -SS--SSEEEEE-TT
T ss_pred CCCeecCEEEEEcCC
Confidence 578899999999654
No 133
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.28 E-value=0.00064 Score=51.96 Aligned_cols=76 Identities=16% Similarity=0.310 Sum_probs=55.9
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC----hhhHHHcC--CCcCceEEEecCCCCC
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG----SDVFQMLR--LNTAPIFMHFPAKGKP 143 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~----~~lf~~l~--v~svP~l~~f~p~g~~ 143 (328)
+++|+.+ ||+.|+...+.+++++..+ +++.+..+|+++. .++.+..+ .+++|++++ +| +
T Consensus 3 v~iy~~~----~C~~C~~a~~~L~~l~~~~-------~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g-~- 67 (85)
T PRK11200 3 VVIFGRP----GCPYCVRAKELAEKLSEER-------DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQ-K- 67 (85)
T ss_pred EEEEeCC----CChhHHHHHHHHHhhcccc-------cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CC-E-
Confidence 6789999 9999999999999998654 2588889999874 35665555 489999863 33 1
Q ss_pred CCCCceeeeecccCHHHHHHHHHhhcC
Q psy8428 144 KPSDTLDIQRVGYSAEAIVKWIADRTD 170 (328)
Q Consensus 144 ~~~~~~~~~~~~~~a~~l~~fl~~~t~ 170 (328)
. .+ .-+++.++++++.+
T Consensus 68 ----~----ig--g~~~~~~~~~~~~~ 84 (85)
T PRK11200 68 ----H----IG--GCTDFEAYVKENLG 84 (85)
T ss_pred ----E----Ec--CHHHHHHHHHHhcc
Confidence 1 12 34778888887765
No 134
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0043 Score=52.92 Aligned_cols=94 Identities=20% Similarity=0.389 Sum_probs=62.3
Q ss_pred CCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHH--ccc--------ccCCCCcEEEEEEECcC---ChhhHHHcCCC
Q psy8428 63 GPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANS--FRY--------SQMYSNKLFFILVDFDE---GSDVFQMLRLN 129 (328)
Q Consensus 63 ~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s--~~~--------~~~~~~~v~F~~vD~~~---~~~lf~~l~v~ 129 (328)
.|.+.+.+++|.++ .|..|..+..+....-+- +.. ....++++.|..-|-++ ..++++.++++
T Consensus 39 ~~~~Kylllmfes~----~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vr 114 (182)
T COG2143 39 SPNDKYLLLMFESN----GCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVR 114 (182)
T ss_pred CccCcEEEEEEcCC----CChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccc
Confidence 45677799999999 999999998765433321 111 12234566666655533 46999999999
Q ss_pred cCceEEEecCCCCCCCCCceeeeecccCHHHHHHHH
Q psy8428 130 TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 130 svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl 165 (328)
+.||+++|...|+. .+.+ .|-.++++++.-+
T Consensus 115 stPtfvFfdk~Gk~----Il~l-PGY~ppe~Fl~vl 145 (182)
T COG2143 115 STPTFVFFDKTGKT----ILEL-PGYMPPEQFLAVL 145 (182)
T ss_pred cCceEEEEcCCCCE----EEec-CCCCCHHHHHHHH
Confidence 99999999876532 2333 3556666655443
No 135
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.26 E-value=0.0019 Score=59.67 Aligned_cols=87 Identities=11% Similarity=0.024 Sum_probs=64.0
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC---------ChhhHHHcCCCcCceEEEec
Q psy8428 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE---------GSDVFQMLRLNTAPIFMHFP 138 (328)
Q Consensus 68 ~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~---------~~~lf~~l~v~svP~l~~f~ 138 (328)
+-+++|+.. .|+.|+++.|..+.+|+.|. =.+.-+.+|=.- +....+++|++.+|++++..
T Consensus 145 ~GL~fFy~s----~Cp~C~~~aPil~~fa~~yg------~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~ 214 (248)
T PRK13703 145 YGLMFFYRG----QDPIDGQLAQVINDFRDTYG------LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVD 214 (248)
T ss_pred ceEEEEECC----CCchhHHHHHHHHHHHHHhC------CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEE
Confidence 467888888 99999999999999999985 245555555322 22356799999999999998
Q ss_pred CCCCCCCCCceeeeecccCHHHHHHHHHhh
Q psy8428 139 AKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 139 p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
++.+ +.+.+..|-.+.++|.+-+...
T Consensus 215 ~~t~----~~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 215 PKSG----SVRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred CCCC----cEEEEeeccCCHHHHHHHHHHH
Confidence 8731 2344444667888887766543
No 136
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.12 E-value=0.0036 Score=51.14 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=72.4
Q ss_pred hHHHHHHc-CCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC--ChhhHHHcCCCcC
Q psy8428 55 KYKEYIKN-GPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE--GSDVFQMLRLNTA 131 (328)
Q Consensus 55 nf~~~v~~-~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~--~~~lf~~l~v~sv 131 (328)
.|++.+.. ......++|+++++.-..||..|++.-.. +++.+-.. .+..+...|++. +.++...++++++
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln------~~fv~w~~dv~~~eg~~la~~l~~~~~ 77 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYIN------TRMLFWACSVAKPEGYRVSQALRERTY 77 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHH------cCEEEEEEecCChHHHHHHHHhCCCCC
Confidence 34454421 22345788999999777799999754322 23332222 358888999976 5789999999999
Q ss_pred ceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhc
Q psy8428 132 PIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (328)
Q Consensus 132 P~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t 169 (328)
|++.+..+..+ +-+......|..+++++.+.|+...
T Consensus 78 P~~~~l~~~~~--~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 78 PFLAMIMLKDN--RMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred CEEEEEEecCC--ceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 99999965421 1122444567889999999887654
No 137
>PLN02412 probable glutathione peroxidase
Probab=97.11 E-value=0.0044 Score=53.67 Aligned_cols=41 Identities=10% Similarity=0.189 Sum_probs=32.4
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEEC
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDF 116 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~ 116 (328)
..+++.|||+ ||++|+.-.|+++++.+.|.. .++.+.-+..
T Consensus 30 k~vlv~f~a~----~C~~c~~e~~~l~~l~~~~~~-----~g~~vvgv~~ 70 (167)
T PLN02412 30 KVLLIVNVAS----KCGLTDSNYKELNVLYEKYKE-----QGFEILAFPC 70 (167)
T ss_pred CEEEEEEeCC----CCCChHHHHHHHHHHHHHHhh-----CCcEEEEecc
Confidence 4688999999 999999999999999999863 2355555543
No 138
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.09 E-value=0.0017 Score=59.50 Aligned_cols=89 Identities=9% Similarity=0.121 Sum_probs=62.3
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHH-------------------------cccccC--------CCC--cEE
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANS-------------------------FRYSQM--------YSN--KLF 110 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s-------------------------~~~~~~--------~~~--~v~ 110 (328)
....++.||-+ .|+.|+.++++.+++-+. |-+.++ ..+ +-.
T Consensus 107 ~k~~I~vFtDp----~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 107 EKHVITVFTDI----TCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCEEEEEEECC----CChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 34578889999 999999999999887531 000000 001 112
Q ss_pred EEEEECcCChhhHHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhh
Q psy8428 111 FILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 111 F~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
.++.+++++.++++++|+++.|+++ +++| . . ..|..++++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G-~-----~---~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNG-T-----L---VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCC-e-----E---eeCCCCHHHHHHHHHHc
Confidence 3456777899999999999999999 6655 1 1 14667899999999864
No 139
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.09 E-value=0.0057 Score=53.04 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=65.0
Q ss_pred cEEEEEe-eCCCCCCCccchhhHHHHHHHHHHcccccC-------CC-----------------CcEEEEEEECcCChhh
Q psy8428 68 SAIVMFT-ALAPQRNCHICVSASDEYTIVANSFRYSQM-------YS-----------------NKLFFILVDFDEGSDV 122 (328)
Q Consensus 68 ~vvV~ft-A~~~~~~C~~C~~~~pef~~vA~s~~~~~~-------~~-----------------~~v~F~~vD~~~~~~l 122 (328)
.+++.|| +. ||++|..-.|+++++++.+...+- +. ..+-| .+=.|...++
T Consensus 31 ~vvl~F~~~~----~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f-~~l~D~~~~~ 105 (173)
T cd03015 31 WVVLFFYPLD----FTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINF-PLLADPKKKI 105 (173)
T ss_pred EEEEEEECCC----CCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcce-eEEECCchhH
Confidence 5778888 78 999999999999999988863100 00 00111 1112345677
Q ss_pred HHHcCCC------cCceEEEecCCCCCCCCCceeee---ecccCHHHHHHHHHhhcCCc-ceeeCCCCCc
Q psy8428 123 FQMLRLN------TAPIFMHFPAKGKPKPSDTLDIQ---RVGYSAEAIVKWIADRTDIQ-IRVFRPPNYS 182 (328)
Q Consensus 123 f~~l~v~------svP~l~~f~p~g~~~~~~~~~~~---~~~~~a~~l~~fl~~~t~~~-i~i~~p~~~~ 182 (328)
.++||+. ..|+.+++.+.|... +... ..+.+.+++.+.|++.-.+. =....|.||+
T Consensus 106 ~~~~gv~~~~~~~~~p~~~lID~~G~I~----~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 171 (173)
T cd03015 106 SRDYGVLDEEEGVALRGTFIIDPEGIIR----HITVNDLPVGRSVDETLRVLDALQFVEEHGEVCPANWK 171 (173)
T ss_pred HHHhCCccccCCceeeEEEEECCCCeEE----EEEecCCCCCCCHHHHHHHHHHhhhhhhcCCCcCCCCC
Confidence 8888886 578899888775431 1111 11345778888886543222 1344577875
No 140
>KOG2501|consensus
Probab=97.00 E-value=0.0014 Score=56.04 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=50.6
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC-----------------------Chhh
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE-----------------------GSDV 122 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~-----------------------~~~l 122 (328)
+..+.++|.|. ||+|||+|-|...++=+...++++ .=.|.|+.-|-++ .+++
T Consensus 33 gKvV~lyFsA~----wC~pCR~FTP~Lk~fYe~l~~~~~-~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l 107 (157)
T KOG2501|consen 33 GKVVGLYFSAH----WCPPCRDFTPILKDFYEELKDNAA-PFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKL 107 (157)
T ss_pred CcEEEEEEEEE----ECCchhhCCchHHHHHHHHHhcCC-ceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHH
Confidence 46788999999 999999998887666554433211 1235555555442 2456
Q ss_pred HHHcCCCcCceEEEecCCCC
Q psy8428 123 FQMLRLNTAPIFMHFPAKGK 142 (328)
Q Consensus 123 f~~l~v~svP~l~~f~p~g~ 142 (328)
.++|++.++|.+.+..|.|.
T Consensus 108 ~~ky~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 108 SEKYEVKGIPALVILKPDGT 127 (157)
T ss_pred HHhcccCcCceeEEecCCCC
Confidence 67999999999999988753
No 141
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=96.99 E-value=0.0033 Score=53.29 Aligned_cols=40 Identities=8% Similarity=0.134 Sum_probs=32.1
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEEC
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDF 116 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~ 116 (328)
..+++.|||+ ||+ |+.-.|+++++.+.|.+ +++.+.-+..
T Consensus 23 k~vvl~fwat----wC~-C~~e~p~l~~l~~~~~~-----~~~~vv~v~~ 62 (152)
T cd00340 23 KVLLIVNVAS----KCG-FTPQYEGLEALYEKYKD-----RGLVVLGFPC 62 (152)
T ss_pred CEEEEEEEcC----CCC-chHHHHHHHHHHHHhcC-----CCEEEEEecc
Confidence 4689999999 999 99999999999999863 3466655543
No 142
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.96 E-value=0.0033 Score=52.54 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=49.5
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECc---------------------CChhhHHH
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD---------------------EGSDVFQM 125 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~---------------------~~~~lf~~ 125 (328)
..++|.||++ .||++|+.-.|.++++++.|.. +++.+.-+..+ .+.++.++
T Consensus 29 k~~vv~f~~~---~~Cp~C~~~~p~l~~l~~~~~~-----~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 100 (146)
T PF08534_consen 29 KPVVVNFWAS---AWCPPCRKELPYLNELQEKYKD-----KGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKA 100 (146)
T ss_dssp SEEEEEEEST---TTSHHHHHHHHHHHHHHHHHHT-----TTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHH
T ss_pred CeEEEEEEcc---CCCCcchhhhhhHHhhhhhhcc-----CceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHH
Confidence 3577888875 3999999999999999988763 12333322222 34578889
Q ss_pred cCCC---------cCceEEEecCCCC
Q psy8428 126 LRLN---------TAPIFMHFPAKGK 142 (328)
Q Consensus 126 l~v~---------svP~l~~f~p~g~ 142 (328)
|++. ++|+.+++.+.|+
T Consensus 101 ~~~~~~~~~~~~~~~P~~~lId~~G~ 126 (146)
T PF08534_consen 101 LGVTIMEDPGNGFGIPTTFLIDKDGK 126 (146)
T ss_dssp TTCEEECCTTTTSSSSEEEEEETTSB
T ss_pred hCCccccccccCCeecEEEEEECCCE
Confidence 9988 9999999987753
No 143
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.91 E-value=0.0081 Score=50.92 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=32.6
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEEC
Q psy8428 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDF 116 (328)
Q Consensus 68 ~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~ 116 (328)
.++|.|+|+ ||++|+.-.|+++++.+.|.. +++.+.-++.
T Consensus 24 ~vvv~~~as----~C~~c~~~~~~l~~l~~~~~~-----~~~~v~~i~~ 63 (153)
T TIGR02540 24 VSLVVNVAS----ECGFTDQNYRALQELHRELGP-----SHFNVLAFPC 63 (153)
T ss_pred EEEEEEeCC----CCCchhhhHHHHHHHHHHHhh-----CCeEEEEEec
Confidence 488899999 999999999999999999863 3466665553
No 144
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.86 E-value=0.0062 Score=46.80 Aligned_cols=77 Identities=19% Similarity=0.284 Sum_probs=53.4
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC----hhhHHHcCC--CcCceEEEecCCCCC
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG----SDVFQMLRL--NTAPIFMHFPAKGKP 143 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~----~~lf~~l~v--~svP~l~~f~p~g~~ 143 (328)
+++|+.+ ||+.|++.+..++++.... ..+.+-.+|+++. .++.+..|- +++|.+++ .+ +
T Consensus 2 V~vys~~----~Cp~C~~ak~~L~~~~~~~-------~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g-~- 66 (86)
T TIGR02183 2 VVIFGRP----GCPYCVRAKQLAEKLAIER-------ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DE-K- 66 (86)
T ss_pred EEEEeCC----CCccHHHHHHHHHHhCccc-------CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CC-E-
Confidence 5678888 9999999998888765332 2477888888753 356666664 89999953 33 1
Q ss_pred CCCCceeeeecccCHHHHHHHHHhhcCC
Q psy8428 144 KPSDTLDIQRVGYSAEAIVKWIADRTDI 171 (328)
Q Consensus 144 ~~~~~~~~~~~~~~a~~l~~fl~~~t~~ 171 (328)
. .+ ..+++.++++++.++
T Consensus 67 -----~---ig--G~~dl~~~~~~~~~~ 84 (86)
T TIGR02183 67 -----H---VG--GCTDFEQLVKENFDI 84 (86)
T ss_pred -----E---ec--CHHHHHHHHHhcccc
Confidence 1 12 357888888887654
No 145
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.82 E-value=0.0041 Score=44.09 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=39.3
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH----cCCCcCceEEE
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM----LRLNTAPIFMH 136 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~----l~v~svP~l~~ 136 (328)
+++|+.+ ||+.|+..+..++ + .++-|-.+|+++.++..+. .|..++|++++
T Consensus 1 V~vy~~~----~C~~C~~~~~~L~----~--------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKP----GCPYCKKAKEFLD----E--------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEEST----TSHHHHHHHHHHH----H--------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcC----CCcCHHHHHHHHH----H--------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999 9999999888763 2 2477889999986544333 39999999986
No 146
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.75 E-value=0.0069 Score=53.41 Aligned_cols=107 Identities=9% Similarity=0.098 Sum_probs=63.7
Q ss_pred cEEEEEe-eCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEE-----------------------CcCChhhH
Q psy8428 68 SAIVMFT-ALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVD-----------------------FDEGSDVF 123 (328)
Q Consensus 68 ~vvV~ft-A~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD-----------------------~~~~~~lf 123 (328)
.+++.|| +. ||++|+.-.|+++++.+.+... +-.+..+..| .|...++.
T Consensus 33 ~vvl~F~p~~----~cp~C~~el~~l~~~~~~~~~~---gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a 105 (187)
T TIGR03137 33 WSVFFFYPAD----FTFVCPTELEDLADKYAELKKL---GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLT 105 (187)
T ss_pred EEEEEEECCC----cCCcCHHHHHHHHHHHHHHHhc---CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHH
Confidence 5788888 88 9999999999999998887531 0112222222 22345788
Q ss_pred HHcCCC------cCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcC--CcceeeCCCCCc
Q psy8428 124 QMLRLN------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD--IQIRVFRPPNYS 182 (328)
Q Consensus 124 ~~l~v~------svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~--~~i~i~~p~~~~ 182 (328)
+.||+. +.|+.+++.+.|.... ..+.....+.+++++.+.|++..- .+....-|.||.
T Consensus 106 ~~~gv~~~~~g~~~p~tfiID~~G~I~~-~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~ 171 (187)
T TIGR03137 106 RNFGVLIEEAGLADRGTFVIDPEGVIQA-VEITDNGIGRDASELLRKIKAAQYVAAHPGEVCPAKWK 171 (187)
T ss_pred HHhCCcccCCCceeeEEEEECCCCEEEE-EEEeCCCCCCCHHHHHHHHHHhhhHHhcCCeeeCCCCC
Confidence 899986 4699999977654310 000001123477888777743221 111233477774
No 147
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.67 E-value=0.024 Score=43.79 Aligned_cols=94 Identities=15% Similarity=0.244 Sum_probs=60.9
Q ss_pred EEeChhh-HHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcC
Q psy8428 49 LRFDGQK-YKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (328)
Q Consensus 49 I~L~~~n-f~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~ 127 (328)
.++++.+ .++++. ..+. ++|-|... +|. ....+|.++|+... +.+.|+.++ +++++++++
T Consensus 2 ~~i~s~~~l~~~~~--~~~~-~vvg~f~~----~~~---~~~~~f~~~A~~~r------~~~~F~~~~---~~~~~~~~~ 62 (97)
T cd02981 2 KELTSKEELEKFLD--KDDV-VVVGFFKD----EES---EEYKTFEKVAESLR------DDYGFGHTS---DKEVAKKLK 62 (97)
T ss_pred eecCCHHHHHHHhc--cCCe-EEEEEECC----CCc---HHHHHHHHHHHhcc------cCCeEEEEC---hHHHHHHcC
Confidence 3455543 444442 2343 44555555 554 67889999999886 357787766 567788887
Q ss_pred CCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHh
Q psy8428 128 LNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (328)
Q Consensus 128 v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~ 167 (328)
++. |++.+|.+..+ ....| .|..+.++|.+|+..
T Consensus 63 ~~~-~~i~l~~~~~~--~~~~y---~g~~~~~~l~~fi~~ 96 (97)
T cd02981 63 VKP-GSVVLFKPFEE--EPVEY---DGEFTEESLVEFIKD 96 (97)
T ss_pred CCC-CceEEeCCccc--CCccC---CCCCCHHHHHHHHHh
Confidence 765 99999987521 11223 356778999999975
No 148
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.66 E-value=0.0037 Score=55.43 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=57.1
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHH-----------------------cccccC--------CC----CcEEE
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANS-----------------------FRYSQM--------YS----NKLFF 111 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s-----------------------~~~~~~--------~~----~~v~F 111 (328)
...++.||.+ .|++|+.+.++.++.... |-.... .+ .....
T Consensus 78 ~~~i~~f~D~----~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 78 KRVVYVFTDP----DCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CEEEEEEECC----CCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 4578889999 999999999988741100 100000 00 12345
Q ss_pred EEEECcCChhhHHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHH
Q psy8428 112 ILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 112 ~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl 165 (328)
+..+++++.++.+++|+++.|+++ ++.| . . ..|..++++|.+||
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G-~-----~---~~G~~~~~~l~~~L 197 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADG-R-----V---VPGAPPAAQLEALL 197 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCC-e-----E---ecCCCCHHHHHhhC
Confidence 667777899999999999999997 7665 1 1 13556778887764
No 149
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.64 E-value=0.012 Score=52.13 Aligned_cols=109 Identities=10% Similarity=0.109 Sum_probs=68.3
Q ss_pred cEEEEEe-eCCCCCCCccchhhHHHHHHHHHHcccccC-------C-----------C---CcEEEEEEECcCChhhHHH
Q psy8428 68 SAIVMFT-ALAPQRNCHICVSASDEYTIVANSFRYSQM-------Y-----------S---NKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 68 ~vvV~ft-A~~~~~~C~~C~~~~pef~~vA~s~~~~~~-------~-----------~---~~v~F~~vD~~~~~~lf~~ 125 (328)
++++.|+ +. ||+.|..-.++|++..+.+.+.+- + . .++-|-.+ .|.+.++.+.
T Consensus 33 ~vvL~F~P~~----~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpll-sD~~~~ia~~ 107 (187)
T PRK10382 33 WSVFFFYPAD----FTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMI-GDPTGALTRN 107 (187)
T ss_pred eEEEEEECCC----CCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEE-EcCchHHHHH
Confidence 5788888 88 999999999999999988853110 0 0 12322222 2356788999
Q ss_pred cCC----CcC--ceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCc--ceeeCCCCCc
Q psy8428 126 LRL----NTA--PIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ--IRVFRPPNYS 182 (328)
Q Consensus 126 l~v----~sv--P~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~--i~i~~p~~~~ 182 (328)
||+ .++ |+.++..+.|........+. ..+.+++++.+.|+..--+. -...-|.||.
T Consensus 108 ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~-~~~~~~~eil~~l~alq~~~~~~g~~~p~~w~ 171 (187)
T PRK10382 108 FDNMREDEGLADRATFVVDPQGIIQAIEVTAE-GIGRDASDLLRKIKAAQYVASHPGEVCPAKWK 171 (187)
T ss_pred cCCCcccCCceeeEEEEECCCCEEEEEEEeCC-CCCCCHHHHHHHHHhhhhHhhcCCeEeCCCCC
Confidence 998 356 99999987764321111111 23468899998885432211 1234588886
No 150
>KOG0911|consensus
Probab=96.64 E-value=0.0019 Score=58.12 Aligned_cols=65 Identities=14% Similarity=0.276 Sum_probs=59.5
Q ss_pred CCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecCC
Q psy8428 65 RNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAK 140 (328)
Q Consensus 65 r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~ 140 (328)
++...++.|+|+ ||.+|+.+...++.+|+.. .++.|++.|.++.+++...+.+.++|++..+..+
T Consensus 16 ~~~~~~~~f~a~----wa~~~~q~~~v~~~~~~~~-------~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~ 80 (227)
T KOG0911|consen 16 KGKLLVLHFWAI----WAVVQKQMDQVFDHLAEYF-------KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLG 80 (227)
T ss_pred ccchhhhhhhhh----hhhhhhhHHHHHHHHHHhh-------hhheeeeehhhhhhHHHHHHHHhcCceeeeeecc
Confidence 566788999999 9999999999999999876 2699999999999999999999999999999665
No 151
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.59 E-value=0.004 Score=46.58 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=38.9
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC-h----hhHHHcCCCcCceEE
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG-S----DVFQMLRLNTAPIFM 135 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~-~----~lf~~l~v~svP~l~ 135 (328)
+++|+++ ||+.|+.+.+.++++.. +..+..+|.+++ . .+-+..|..++|+++
T Consensus 2 v~~y~~~----~Cp~C~~~~~~l~~~~~----------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~ 58 (82)
T cd03419 2 VVVFSKS----YCPYCKRAKSLLKELGV----------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF 58 (82)
T ss_pred EEEEEcC----CCHHHHHHHHHHHHcCC----------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 4789999 99999999998887654 244667776654 2 344667899999974
No 152
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.59 E-value=0.018 Score=58.76 Aligned_cols=101 Identities=12% Similarity=0.190 Sum_probs=71.7
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHc
Q psy8428 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (328)
Q Consensus 47 ~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l 126 (328)
+-..|+++.-+++ ..-.++.. +-.|.++ .|+.|.......+++|..- +++-+-.+|..+.|++.++|
T Consensus 99 ~~~~l~~~~~~~i-~~~~~~~~-i~~fv~~----~Cp~Cp~~v~~~~~~a~~~-------~~i~~~~id~~~~~~~~~~~ 165 (517)
T PRK15317 99 HPPKLDQEVIEQI-KALDGDFH-FETYVSL----SCHNCPDVVQALNLMAVLN-------PNITHTMIDGALFQDEVEAR 165 (517)
T ss_pred CCCCCCHHHHHHH-HhcCCCeE-EEEEEcC----CCCCcHHHHHHHHHHHHhC-------CCceEEEEEchhCHhHHHhc
Confidence 3456666554443 33333433 5668888 9999999999999998642 46889999999999999999
Q ss_pred CCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcC
Q psy8428 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (328)
Q Consensus 127 ~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~ 170 (328)
+++++|++++ . + + ....+..+.+++.+.+.+..+
T Consensus 166 ~v~~VP~~~i-~-~-~-------~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 166 NIMAVPTVFL-N-G-E-------EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred CCcccCEEEE-C-C-c-------EEEecCCCHHHHHHHHhcccc
Confidence 9999999975 2 2 1 112344566777777776554
No 153
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=96.56 E-value=0.01 Score=53.01 Aligned_cols=106 Identities=14% Similarity=0.203 Sum_probs=65.2
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEEC---------------------------cCC
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDF---------------------------DEG 119 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~---------------------------~~~ 119 (328)
+.+++.|+++ ||+.|..-.+++.++++.+.+. ++.+.-+.. |.+
T Consensus 27 ~vvlf~~pa~----~cp~C~~el~~l~~~~~~f~~~-----gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~ 97 (203)
T cd03016 27 WGILFSHPAD----FTPVCTTELGAFAKLAPEFKKR-----NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPD 97 (203)
T ss_pred EEEEEEecCC----CCCcCHHHHHHHHHHHHHHHHc-----CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECch
Confidence 4456678888 9999999999999999888642 122222222 224
Q ss_pred hhhHHHcCCC--------cCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCc-ceeeCCCCCc
Q psy8428 120 SDVFQMLRLN--------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ-IRVFRPPNYS 182 (328)
Q Consensus 120 ~~lf~~l~v~--------svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~-i~i~~p~~~~ 182 (328)
.++++.||+. ++|..+++.|.|+......+.. ..+++.+++.+.|.+.-... -.+..|-||.
T Consensus 98 ~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~-~~gr~~~ell~~l~~lq~~~~~~~~~p~~w~ 168 (203)
T cd03016 98 REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPA-TTGRNFDEILRVVDALQLTDKHKVATPANWK 168 (203)
T ss_pred HHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCC-CCCCCHHHHHHHHHHHhhHhhcCcCcCCCCC
Confidence 5778889986 2456888877654321111111 12567888888886532211 2455678885
No 154
>PRK13190 putative peroxiredoxin; Provisional
Probab=96.50 E-value=0.011 Score=52.78 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=68.1
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccC-------C---------------CC-cEEEEEEECcCChhhH
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQM-------Y---------------SN-KLFFILVDFDEGSDVF 123 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~-------~---------------~~-~v~F~~vD~~~~~~lf 123 (328)
+.++..|++. ||+.|..-.+++++..+++.+.+- + .+ ++-|-. =.|.+.++.
T Consensus 29 ~vvL~~~p~~----~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPl-l~D~~~~ia 103 (202)
T PRK13190 29 WVLLFSHPAD----FTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPV-IADIDKELA 103 (202)
T ss_pred EEEEEEEcCC----CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEE-EECCChHHH
Confidence 4444568899 999999989999988888753110 0 00 122221 123457889
Q ss_pred HHcCCC------cCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCc-ceeeCCCCCc
Q psy8428 124 QMLRLN------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ-IRVFRPPNYS 182 (328)
Q Consensus 124 ~~l~v~------svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~-i~i~~p~~~~ 182 (328)
+.||+. ++|+.+++.|.|.......++. ..+++.+++.+.|+...-.. ....-|-||.
T Consensus 104 ~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~-~~gr~~~ellr~l~~l~~~~~~~~~~p~~w~ 168 (202)
T PRK13190 104 REYNLIDENSGATVRGVFIIDPNQIVRWMIYYPA-ETGRNIDEIIRITKALQVNWKRKVATPANWQ 168 (202)
T ss_pred HHcCCccccCCcEEeEEEEECCCCEEEEEEEeCC-CCCCCHHHHHHHHHHhhhHHhcCCCcCCCCC
Confidence 999985 5899999988754321111121 34678899988887643211 2344577774
No 155
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.39 E-value=0.03 Score=57.66 Aligned_cols=96 Identities=11% Similarity=0.101 Sum_probs=70.0
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHc
Q psy8428 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (328)
Q Consensus 47 ~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l 126 (328)
+-..|+++.-+++ ..-+++.. +-.|.++ +|+.|.......+++|... +++-.-.+|.++.+++.++|
T Consensus 459 ~~~~l~~~~~~~i-~~~~~~~~-i~v~~~~----~C~~Cp~~~~~~~~~~~~~-------~~i~~~~i~~~~~~~~~~~~ 525 (555)
T TIGR03143 459 PGQPLGEELLEKI-KKITKPVN-IKIGVSL----SCTLCPDVVLAAQRIASLN-------PNVEAEMIDVSHFPDLKDEY 525 (555)
T ss_pred CCCCCCHHHHHHH-HhcCCCeE-EEEEECC----CCCCcHHHHHHHHHHHHhC-------CCceEEEEECcccHHHHHhC
Confidence 3456766655544 33334443 4446788 9999999999999988764 36889999999999999999
Q ss_pred CCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHH
Q psy8428 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (328)
Q Consensus 127 ~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl 165 (328)
+|.++|++++ ++ +.-+ .|..+.+++.+||
T Consensus 526 ~v~~vP~~~i--~~-------~~~~-~G~~~~~~~~~~~ 554 (555)
T TIGR03143 526 GIMSVPAIVV--DD-------QQVY-FGKKTIEEMLELI 554 (555)
T ss_pred CceecCEEEE--CC-------EEEE-eeCCCHHHHHHhh
Confidence 9999999986 22 1112 3556888888886
No 156
>PTZ00256 glutathione peroxidase; Provisional
Probab=96.38 E-value=0.019 Score=50.42 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=29.4
Q ss_pred EEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEE
Q psy8428 69 AIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVD 115 (328)
Q Consensus 69 vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD 115 (328)
+++.++|+ ||++|++-.|+++++.++|.. .++.+.-++
T Consensus 44 vlv~n~at----wCp~C~~e~p~l~~l~~~~~~-----~gv~vv~vs 81 (183)
T PTZ00256 44 IIVVNVAC----KCGLTSDHYTQLVELYKQYKS-----QGLEILAFP 81 (183)
T ss_pred EEEEEECC----CCCchHHHHHHHHHHHHHHhh-----CCcEEEEEe
Confidence 45566999 999999999999999999863 235555554
No 157
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.35 E-value=0.008 Score=44.35 Aligned_cols=66 Identities=12% Similarity=0.354 Sum_probs=47.0
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHc---CCCcCceEEEecCCCCCCCCC
Q psy8428 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML---RLNTAPIFMHFPAKGKPKPSD 147 (328)
Q Consensus 71 V~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l---~v~svP~l~~f~p~g~~~~~~ 147 (328)
.+|+.+ +|+.|+..+..+++ .++-|-.+|++++++.++.+ |..++|.+++ .| +
T Consensus 2 ~ly~~~----~Cp~C~~ak~~L~~------------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g-~----- 57 (72)
T TIGR02194 2 TVYSKN----NCVQCKMTKKALEE------------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DG-D----- 57 (72)
T ss_pred EEEeCC----CCHHHHHHHHHHHH------------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CC-C-----
Confidence 568888 99999998876652 24778889999887666655 8889999865 22 1
Q ss_pred ceeeeecccCHHHHHH
Q psy8428 148 TLDIQRVGYSAEAIVK 163 (328)
Q Consensus 148 ~~~~~~~~~~a~~l~~ 163 (328)
. . .+|.+.+++.+
T Consensus 58 ~-~--~~G~~~~~~~~ 70 (72)
T TIGR02194 58 L-S--WSGFRPDKLKA 70 (72)
T ss_pred c-E--EeccCHHHHHh
Confidence 1 1 25677766654
No 158
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.31 E-value=0.0086 Score=42.85 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=37.6
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhh----HHHcCCCcCceEEE
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDV----FQMLRLNTAPIFMH 136 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~l----f~~l~v~svP~l~~ 136 (328)
+++|+++ ||+.|+..++.+++. ++.+-.+|++++++. .+..+..++|+++.
T Consensus 2 v~ly~~~----~Cp~C~~~~~~L~~~------------~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKS----TCPYCKRAKRLLESL------------GIEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECC----CCHHHHHHHHHHHHc------------CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5678899 999999998877643 256778888876544 33457789998853
No 159
>PRK13599 putative peroxiredoxin; Provisional
Probab=96.28 E-value=0.017 Score=52.29 Aligned_cols=110 Identities=18% Similarity=0.175 Sum_probs=68.5
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccC-------CC----------------CcEEEEEEECcCChhhH
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQM-------YS----------------NKLFFILVDFDEGSDVF 123 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~-------~~----------------~~v~F~~vD~~~~~~lf 123 (328)
+.+++.|.+. ||+.|..-.+.|.++++.+.+.+- ++ .++-|=.+ .|.+.++.
T Consensus 30 ~vVL~~~pa~----~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil-~D~~~~va 104 (215)
T PRK13599 30 WFVLFSHPAD----FTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVI-ADDLGKVS 104 (215)
T ss_pred eEEEEEeCCC----CCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEE-ECCCchHH
Confidence 4456788898 999999999999999988853100 00 01222211 23456788
Q ss_pred HHcCCC-------cCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhh-cCCcceeeCCCCCc
Q psy8428 124 QMLRLN-------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR-TDIQIRVFRPPNYS 182 (328)
Q Consensus 124 ~~l~v~-------svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~-t~~~i~i~~p~~~~ 182 (328)
+.||+. ++|+++++.|.|+......+.. ..+++.+++.+.|.+. +.-.-.+..|-||.
T Consensus 105 ~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~-~~gr~~~eilr~l~~lq~~~~~~~~~p~~w~ 170 (215)
T PRK13599 105 NQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQ-EVGRNVDEILRALKALQTADQYGVALPEKWP 170 (215)
T ss_pred HHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCC-CCCCCHHHHHHHHHHhhhhhhcCCCcCCCCC
Confidence 999983 7899999988754321111121 2356788888888642 11112456688884
No 160
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.22 E-value=0.033 Score=45.84 Aligned_cols=29 Identities=10% Similarity=0.297 Sum_probs=24.7
Q ss_pred cEEEEEe-eCCCCCCCccchhhHHHHHHHHHHcc
Q psy8428 68 SAIVMFT-ALAPQRNCHICVSASDEYTIVANSFR 100 (328)
Q Consensus 68 ~vvV~ft-A~~~~~~C~~C~~~~pef~~vA~s~~ 100 (328)
.+++.|+ +. ||+.|....|++.++.+.+.
T Consensus 25 ~~ll~f~~~~----~cp~C~~~~~~l~~~~~~~~ 54 (140)
T cd03017 25 PVVLYFYPKD----DTPGCTKEACDFRDLYEEFK 54 (140)
T ss_pred cEEEEEeCCC----CCCchHHHHHHHHHHHHHHH
Confidence 4777887 57 99999999999999998875
No 161
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.15 E-value=0.029 Score=42.72 Aligned_cols=72 Identities=14% Similarity=0.326 Sum_probs=52.2
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhH---HHcCCCcCceEEEecCCCCCCCC
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVF---QMLRLNTAPIFMHFPAKGKPKPS 146 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf---~~l~v~svP~l~~f~p~g~~~~~ 146 (328)
+.+||.+ ||+.|+..+..+++ ..+-|-.+|++++++.. +..|.+++|.++. ++
T Consensus 3 v~lYt~~----~Cp~C~~ak~~L~~------------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~------ 58 (81)
T PRK10329 3 ITIYTRN----DCVQCHATKRAMES------------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD------ 58 (81)
T ss_pred EEEEeCC----CCHhHHHHHHHHHH------------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC------
Confidence 5678899 99999998876642 24788899999877643 3457789999975 21
Q ss_pred CceeeeecccCHHHHHHHHHhhc
Q psy8428 147 DTLDIQRVGYSAEAIVKWIADRT 169 (328)
Q Consensus 147 ~~~~~~~~~~~a~~l~~fl~~~t 169 (328)
.. ..|++.+.+.+.....+
T Consensus 59 --~~--~~Gf~~~~l~~~~~~~~ 77 (81)
T PRK10329 59 --LS--WSGFRPDMINRLHPAPH 77 (81)
T ss_pred --EE--EecCCHHHHHHHHHhhh
Confidence 11 35788888888876543
No 162
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=96.13 E-value=0.018 Score=47.82 Aligned_cols=46 Identities=9% Similarity=0.195 Sum_probs=35.5
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChh
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD 121 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~ 121 (328)
..++++|+++ ||++|++-.|++.++.+++.+ .++.+.-+..++..+
T Consensus 25 ~~vl~f~~~~----~Cp~C~~~~~~l~~~~~~~~~-----~~v~vv~V~~~~~~~ 70 (149)
T cd02970 25 PVVVVFYRGF----GCPFCREYLRALSKLLPELDA-----LGVELVAVGPESPEK 70 (149)
T ss_pred CEEEEEECCC----CChhHHHHHHHHHHHHHHHHh-----cCeEEEEEeCCCHHH
Confidence 3455666799 999999999999999998863 357777787776443
No 163
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.10 E-value=0.04 Score=47.39 Aligned_cols=80 Identities=10% Similarity=0.206 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecCCCCCCCCCceeeeecc-cCHHHHHHHH
Q psy8428 87 SASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVG-YSAEAIVKWI 165 (328)
Q Consensus 87 ~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~-~~a~~l~~fl 165 (328)
+...+|+++|+.+. +.+.|+.++ +++++++++++. |++++|+++.+ ..... .+. .+.++|.+||
T Consensus 7 ~~~~~f~~~A~~~~------~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~----~~~~y-~~~~~~~~~l~~fI 71 (184)
T PF13848_consen 7 ELFEIFEEAAEKLK------GDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDE----KPVVY-DGDKFTPEELKKFI 71 (184)
T ss_dssp HHHHHHHHHHHHHT------TTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTT----SEEEE-SSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHhCc------CCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCC----Cceec-ccccCCHHHHHHHH
Confidence 45678999999986 468899887 777999999999 99999998521 12232 243 7899999999
Q ss_pred HhhcCCcceeeCCCCC
Q psy8428 166 ADRTDIQIRVFRPPNY 181 (328)
Q Consensus 166 ~~~t~~~i~i~~p~~~ 181 (328)
++..-..+.-..+.|+
T Consensus 72 ~~~~~P~v~~~t~~n~ 87 (184)
T PF13848_consen 72 KKNSFPLVPELTPENF 87 (184)
T ss_dssp HHHSSTSCEEESTTHH
T ss_pred HHhccccccccchhhH
Confidence 9886655554445444
No 164
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.01 E-value=0.0089 Score=44.70 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=37.7
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHc----CCCcCceEEE
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML----RLNTAPIFMH 136 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l----~v~svP~l~~ 136 (328)
+++|+.+ ||+.|++.+..+++. ++-|-.+|++.+++..+++ |..++|++++
T Consensus 1 v~ly~~~----~Cp~C~~a~~~L~~~------------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKP----YCPYCTRAKALLSSK------------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecC----CChhHHHHHHHHHHc------------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3678888 999999998877632 3567777888876555444 7789999843
No 165
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.99 E-value=0.02 Score=42.02 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=37.0
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH----cCCC-cCceEE
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM----LRLN-TAPIFM 135 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~----l~v~-svP~l~ 135 (328)
+++|+.+ +|+.|+..+..+++ .++-|-.+|++++++..++ .+-. ++|.++
T Consensus 2 i~ly~~~----~Cp~C~~ak~~L~~------------~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKP----NCPYCVRAKALLDK------------KGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCC----CChHHHHHHHHHHH------------CCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 5678889 99999998776653 2467778888887555444 5766 999885
No 166
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=95.97 E-value=0.027 Score=45.18 Aligned_cols=43 Identities=14% Similarity=0.306 Sum_probs=32.0
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC
Q psy8428 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE 118 (328)
Q Consensus 68 ~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~ 118 (328)
++++.|+++ .||+.|+.-.++++++.+.+.. .++.+.-+..++
T Consensus 27 ~~vl~f~~~---~~c~~c~~~l~~l~~~~~~~~~-----~~~~vi~is~d~ 69 (124)
T PF00578_consen 27 PVVLFFWPT---AWCPFCQAELPELNELYKKYKD-----KGVQVIGISTDD 69 (124)
T ss_dssp EEEEEEEST---TTSHHHHHHHHHHHHHHHHHHT-----TTEEEEEEESSS
T ss_pred cEEEEEeCc---cCccccccchhHHHHHhhhhcc-----ceEEeeeccccc
Confidence 455555554 2999999999999999988863 357777666654
No 167
>PRK15000 peroxidase; Provisional
Probab=95.89 E-value=0.04 Score=49.21 Aligned_cols=111 Identities=10% Similarity=0.141 Sum_probs=66.8
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccC-------CC--------------C---cEEEEEEECcCChhh
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQM-------YS--------------N---KLFFILVDFDEGSDV 122 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~-------~~--------------~---~v~F~~vD~~~~~~l 122 (328)
.++++.||+.+ ||+.|..-.|++.+.++.+.+.+- ++ . ++.| .+-.|.+.++
T Consensus 35 k~vvL~F~p~~---~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~f-pllsD~~~~i 110 (200)
T PRK15000 35 KTTVLFFWPMD---FTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKY-AMVADVKREI 110 (200)
T ss_pred CEEEEEEECCC---CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCc-eEEECCCcHH
Confidence 36888898831 899999999999999988863110 00 0 1111 1223445678
Q ss_pred HHHcCCC------cCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCc-ceeeCCCCCc
Q psy8428 123 FQMLRLN------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ-IRVFRPPNYS 182 (328)
Q Consensus 123 f~~l~v~------svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~-i~i~~p~~~~ 182 (328)
.+.||+. ++|..+++.|.|........+. ..+++.+++.+.++..--.. -...-|-||.
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~-~~gr~~~eilr~l~al~~~~~~~~~~p~~w~ 176 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDL-PLGRNIDEMLRMVDALQFHEEHGDVCPAQWE 176 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCC-CCCCCHHHHHHHHHHhhhHHhcCCCcCCCCC
Confidence 8889987 6899999987654321011111 23567888888885421110 1234577884
No 168
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.85 E-value=0.082 Score=53.88 Aligned_cols=100 Identities=9% Similarity=0.122 Sum_probs=70.2
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
.+-.+|+++.-+++ .+-.++.. +-.|.++ .|+.|....-..+++|... .++-.-.+|..+.|++.++
T Consensus 99 ~~~~~l~~~~~~~~-~~~~~~~~-i~~f~~~----~Cp~Cp~~v~~~~~~a~~~-------p~i~~~~id~~~~~~~~~~ 165 (515)
T TIGR03140 99 GHGPKLDEGIIDRI-RRLNGPLH-FETYVSL----TCQNCPDVVQALNQMALLN-------PNISHTMIDGALFQDEVEA 165 (515)
T ss_pred CCCCCCCHHHHHHH-HhcCCCeE-EEEEEeC----CCCCCHHHHHHHHHHHHhC-------CCceEEEEEchhCHHHHHh
Confidence 34567877765544 33344544 4557788 9999999888888888653 3688888999999999999
Q ss_pred cCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhh
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
|+++++|++++ . + + ....+..+.+++.+.+.+.
T Consensus 166 ~~v~~VP~~~i-~-~-~-------~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 166 LGIQGVPAVFL-N-G-E-------EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred cCCcccCEEEE-C-C-c-------EEEecCCCHHHHHHHHhhc
Confidence 99999999986 2 2 1 1112445556666666554
No 169
>KOG3171|consensus
Probab=95.84 E-value=0.043 Score=49.21 Aligned_cols=107 Identities=10% Similarity=0.188 Sum_probs=78.1
Q ss_pred eEEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHc
Q psy8428 48 VLRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (328)
Q Consensus 48 VI~L~~-~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l 126 (328)
|+++++ +.|-+.+...-.-+.++|..|-+ .-+-|..+.....-+|..|. .+.|+++-.+.. ..-++|
T Consensus 140 V~El~~gkqfld~idke~ks~~i~VhIYEd----gi~gcealn~~~~cLAAeyP-------~vKFckikss~~-gas~~F 207 (273)
T KOG3171|consen 140 VYELETGKQFLDTIDKELKSTTIVVHIYED----GIKGCEALNSSLTCLAAEYP-------IVKFCKIKSSNT-GASDRF 207 (273)
T ss_pred EEEeccchhHHHHHhcccceEEEEEEEecC----CCchHHHHhhhHHHhhccCC-------ceeEEEeeeccc-cchhhh
Confidence 999988 46777764222557778999998 88889999999999999884 699999977653 346788
Q ss_pred CCCcCceEEEecCCCCCCCCCcee---eeecccCHHHHHHHHHhh
Q psy8428 127 RLNTAPIFMHFPAKGKPKPSDTLD---IQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 127 ~v~svP~l~~f~p~g~~~~~~~~~---~~~~~~~a~~l~~fl~~~ 168 (328)
..+.+|++++|+.| +.- +.-+. .....+.+-++..||++.
T Consensus 208 ~~n~lP~LliYkgG-eLI-gNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 208 SLNVLPTLLIYKGG-ELI-GNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred cccCCceEEEeeCC-chh-HHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 99999999999976 221 00011 111245688899999875
No 170
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.79 E-value=0.024 Score=42.62 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=40.4
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC---hhhHHHcCCCcCceEEE
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG---SDVFQMLRLNTAPIFMH 136 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~---~~lf~~l~v~svP~l~~ 136 (328)
+..-+++|+.+ ||+.|+..+..+++. ++-|-.+|+++. .++.+..|..++|.+++
T Consensus 6 ~~~~V~ly~~~----~Cp~C~~ak~~L~~~------------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 6 KPESVVVFTKP----GCPFCAKAKATLKEK------------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CCCCEEEEECC----CCHhHHHHHHHHHHc------------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 34457889999 999999988877532 355667788764 45555678999999964
No 171
>PRK13189 peroxiredoxin; Provisional
Probab=95.64 E-value=0.049 Score=49.49 Aligned_cols=111 Identities=14% Similarity=0.194 Sum_probs=66.8
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccC-------CC----------------CcEEEEEEECcCChhh
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQM-------YS----------------NKLFFILVDFDEGSDV 122 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~-------~~----------------~~v~F~~vD~~~~~~l 122 (328)
++.+++.|++. ||+.|..-.+++.+.++.+.+.+- ++ .++-|-.+ .|.+.++
T Consensus 36 k~vvL~f~pa~----fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPll-sD~~~~i 110 (222)
T PRK13189 36 KWFVLFSHPAD----FTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPII-ADDRGEI 110 (222)
T ss_pred CeEEEEEeCCC----CCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEE-EcCccHH
Confidence 35566678899 999999999999999888753110 00 01222111 1235678
Q ss_pred HHHcCCC-------cCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCc-ceeeCCCCCc
Q psy8428 123 FQMLRLN-------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ-IRVFRPPNYS 182 (328)
Q Consensus 123 f~~l~v~-------svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~-i~i~~p~~~~ 182 (328)
+++||+. ++|+.++..|.|.......++. ..+++.+++.+.|....... -...-|-||.
T Consensus 111 a~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~-~~gr~~~eilr~l~alq~~~~~~~~~p~~w~ 177 (222)
T PRK13189 111 AKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQ-EVGRNMDEILRLVKALQTSDEKGVATPANWP 177 (222)
T ss_pred HHHhCCCccccCCCceeEEEEECCCCeEEEEEecCC-CCCCCHHHHHHHHHHhhhHhhcCcCcCCCCC
Confidence 8899976 5799999988754321111121 24567788888886432111 1345577874
No 172
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=95.58 E-value=0.073 Score=49.63 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=65.4
Q ss_pred cEEEEEe-eCCCCCCCccchhhHHHHHHHHHHcccccC-------CC-----------------CcEEEEEEECcCChhh
Q psy8428 68 SAIVMFT-ALAPQRNCHICVSASDEYTIVANSFRYSQM-------YS-----------------NKLFFILVDFDEGSDV 122 (328)
Q Consensus 68 ~vvV~ft-A~~~~~~C~~C~~~~pef~~vA~s~~~~~~-------~~-----------------~~v~F~~vD~~~~~~l 122 (328)
.++++|+ +. ||++|..-.|+|++..+.+.+.+- ++ .++-|- +=.|.+.++
T Consensus 100 ~vVL~FyPa~----ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fP-lLsD~~~~i 174 (261)
T PTZ00137 100 YGLLVFYPLD----FTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFP-LFSDISREV 174 (261)
T ss_pred eEEEEEECCC----CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceE-EEEcCChHH
Confidence 3555555 78 999999999999999888853210 00 122221 111235788
Q ss_pred HHHcCCC-----cCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCc-ceeeCCCCCc
Q psy8428 123 FQMLRLN-----TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ-IRVFRPPNYS 182 (328)
Q Consensus 123 f~~l~v~-----svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~-i~i~~p~~~~ 182 (328)
++.||+. +.|..+++.+.|.......++. ..+++.+++.+-|...--.. -...-|.||.
T Consensus 175 akayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~-~~gr~v~eiLr~l~alq~~~~~g~~cPanW~ 239 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDL-GLGRSVDETLRLFDAVQFAEKTGNVCPVNWK 239 (261)
T ss_pred HHHcCCCCcCCceecEEEEECCCCEEEEEEEeCC-CCCCCHHHHHHHHHHhchhhhcCCCcCCCCC
Confidence 9999985 5899999987754321111222 23567888888775432111 1234477775
No 173
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=95.54 E-value=0.044 Score=47.31 Aligned_cols=28 Identities=7% Similarity=0.213 Sum_probs=25.7
Q ss_pred cEEEEEeeCCCCCC-CccchhhHHHHHHHHHHc
Q psy8428 68 SAIVMFTALAPQRN-CHICVSASDEYTIVANSF 99 (328)
Q Consensus 68 ~vvV~ftA~~~~~~-C~~C~~~~pef~~vA~s~ 99 (328)
.+++.||++ | |++|+.-.|++++.++++
T Consensus 46 ~vvl~f~~s----~~cp~C~~e~~~l~~~~~~~ 74 (167)
T PRK00522 46 RKVLNIFPS----IDTGVCATSVRKFNQEAAEL 74 (167)
T ss_pred EEEEEEEcC----CCCCccHHHHHHHHHHHHHc
Confidence 689999999 9 999999999999998886
No 174
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=95.50 E-value=0.049 Score=45.20 Aligned_cols=40 Identities=8% Similarity=0.197 Sum_probs=31.6
Q ss_pred cEEEEEeeCCCCCC-CccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC
Q psy8428 68 SAIVMFTALAPQRN-CHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE 118 (328)
Q Consensus 68 ~vvV~ftA~~~~~~-C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~ 118 (328)
.+++.||++ | |++|+.-.|.++++.+++. ++.+.-+..++
T Consensus 28 ~vvl~f~~~----~~c~~C~~e~~~l~~~~~~~~-------~~~vi~Is~d~ 68 (143)
T cd03014 28 VKVISVFPS----IDTPVCATQTKRFNKEAAKLD-------NTVVLTISADL 68 (143)
T ss_pred eEEEEEEcC----CCCCcCHHHHHHHHHHHHhcC-------CCEEEEEECCC
Confidence 588999998 8 6999999999999998863 35566666654
No 175
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=95.48 E-value=0.09 Score=42.33 Aligned_cols=88 Identities=11% Similarity=0.189 Sum_probs=63.2
Q ss_pred hhhCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChh
Q psy8428 42 MNAKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD 121 (328)
Q Consensus 42 l~~~~~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~ 121 (328)
+..+.|.-+++.++++.++. .+ -..+++|+ .+|. .|+-|....=+.-++.+++. +.+..+.++-+...+
T Consensus 5 l~~~~g~~~vd~~~ld~~l~-~~--~~~vlf~~-gDp~-r~~E~~DvaVILPEL~~af~------~~~~~avv~~~~e~~ 73 (107)
T PF07449_consen 5 LVTRHGWPRVDADTLDAFLA-AP--GDAVLFFA-GDPA-RFPETADVAVILPELVKAFP------GRFRGAVVARAAERA 73 (107)
T ss_dssp HHTT-TEEEE-CCCHHHHHH-CC--SCEEEEES-S-TT-TSTTCCHHHHHHHHHHCTST------TSEEEEEEEHHHHHH
T ss_pred HhhhcCCeeechhhHHHHHh-CC--CcEEEEEC-CCCC-cCcccccceeEcHHHHHhhh------CccceEEECchhHHH
Confidence 34567888999999999985 32 23555554 4443 45666665556667777775 568888889777899
Q ss_pred hHHHcCCCcCceEEEecCC
Q psy8428 122 VFQMLRLNTAPIFMHFPAK 140 (328)
Q Consensus 122 lf~~l~v~svP~l~~f~p~ 140 (328)
+..+||+...|++++|..|
T Consensus 74 L~~r~gv~~~PaLvf~R~g 92 (107)
T PF07449_consen 74 LAARFGVRRWPALVFFRDG 92 (107)
T ss_dssp HHHHHT-TSSSEEEEEETT
T ss_pred HHHHhCCccCCeEEEEECC
Confidence 9999999999999999987
No 176
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=95.45 E-value=0.027 Score=48.75 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=51.7
Q ss_pred EeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHH-H--HHHHHHcccccCCCCcEEEEEEECcCChhhHHHc
Q psy8428 50 RFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDE-Y--TIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (328)
Q Consensus 50 ~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pe-f--~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l 126 (328)
..+++-|++--. .+..+++.+.++ ||+.|+.|+.+ | .+||+-.. ++..=+++|-++.|++-..|
T Consensus 24 ~w~~ea~~~Ak~---e~KpIfl~ig~~----~C~wChvM~~esf~d~eVa~~lN------~~FI~VkvDree~Pdid~~y 90 (163)
T PF03190_consen 24 PWGEEALEKAKK---ENKPIFLSIGYS----WCHWCHVMERESFSDPEVAEYLN------RNFIPVKVDREERPDIDKIY 90 (163)
T ss_dssp -SSHHHHHHHHH---HT--EEEEEE-T----T-HHHHHHHHHTTT-HHHHHHHH------HH-EEEEEETTT-HHHHHHH
T ss_pred cCCHHHHHHHHh---cCCcEEEEEEec----CCcchhhhcccCcCCHHHHHHHh------CCEEEEEeccccCccHHHHH
Confidence 345566666532 355799999999 99999988863 3 34555543 35788999999999998888
Q ss_pred --------CCCcCceEEEecCCCCC
Q psy8428 127 --------RLNTAPIFMHFPAKGKP 143 (328)
Q Consensus 127 --------~v~svP~l~~f~p~g~~ 143 (328)
|..+.|+-++..|.|++
T Consensus 91 ~~~~~~~~~~gGwPl~vfltPdg~p 115 (163)
T PF03190_consen 91 MNAVQAMSGSGGWPLTVFLTPDGKP 115 (163)
T ss_dssp HHHHHHHHS---SSEEEEE-TTS-E
T ss_pred HHHHHHhcCCCCCCceEEECCCCCe
Confidence 78899999999887543
No 177
>PRK13191 putative peroxiredoxin; Provisional
Probab=95.31 E-value=0.079 Score=47.91 Aligned_cols=107 Identities=14% Similarity=0.175 Sum_probs=65.8
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEEC---------------------------cC
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDF---------------------------DE 118 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~---------------------------~~ 118 (328)
++.++..|.++ ||+.|..-.+++++.++.+.+. ++.+.-+.+ |.
T Consensus 34 K~vvLff~pa~----ftpvC~tEl~~l~~~~~ef~~~-----g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~ 104 (215)
T PRK13191 34 RWFVLFSHPGD----FTPVCTTEFYSFAKKYEEFKKL-----NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADP 104 (215)
T ss_pred CcEEEEEeCCC----CCCcCHHHHHHHHHHHHHHHHC-----CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECC
Confidence 35455688898 9999999999999999888631 111111111 23
Q ss_pred ChhhHHHcCCC-------cCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCc-ceeeCCCCCc
Q psy8428 119 GSDVFQMLRLN-------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ-IRVFRPPNYS 182 (328)
Q Consensus 119 ~~~lf~~l~v~-------svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~-i~i~~p~~~~ 182 (328)
+.++.++||+- ++|..+++.|.|.......++. ..+++.+++.+.|...-... -...-|-||.
T Consensus 105 ~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~-~~gr~~~eilr~l~alq~~~~~~~~~P~~w~ 175 (215)
T PRK13191 105 MGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPM-EIGRNIDEILRAIRALQLVDKAGVVTPANWP 175 (215)
T ss_pred chHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCC-CCCCCHHHHHHHHHHhhhhhhcCCCcCCCCC
Confidence 45777888863 4788899987754321111222 23568899888886532111 1344577775
No 178
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.27 E-value=0.028 Score=44.47 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=34.0
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChh---hH----HHcCCCcCceEE
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD---VF----QMLRLNTAPIFM 135 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~---lf----~~l~v~svP~l~ 135 (328)
++.|+.+ ||+.|+..+..+++. ++-|..+|+++.++ .. +.-|-+++|.++
T Consensus 10 Vvvysk~----~Cp~C~~ak~~L~~~------------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf 66 (99)
T TIGR02189 10 VVIFSRS----SCCMCHVVKRLLLTL------------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF 66 (99)
T ss_pred EEEEECC----CCHHHHHHHHHHHHc------------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE
Confidence 6778899 999999988755533 24455677776432 32 233678999984
No 179
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=95.13 E-value=0.053 Score=44.73 Aligned_cols=44 Identities=11% Similarity=0.274 Sum_probs=32.6
Q ss_pred cEEEEEeeCCCCCCCcc-chhhHHHHHHHHHHcccccCCCCcEEEEEEECc
Q psy8428 68 SAIVMFTALAPQRNCHI-CVSASDEYTIVANSFRYSQMYSNKLFFILVDFD 117 (328)
Q Consensus 68 ~vvV~ftA~~~~~~C~~-C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~ 117 (328)
.+++.|+++ ||++ |....|+++++.+++..... +++.+.-+..+
T Consensus 24 ~~vl~f~~~----~C~~~C~~~l~~l~~~~~~~~~~~~--~~v~~v~vs~d 68 (142)
T cd02968 24 PVLVYFGYT----HCPDVCPTTLANLAQALKQLGADGG--DDVQVVFISVD 68 (142)
T ss_pred EEEEEEEcC----CCcccCHHHHHHHHHHHHHhhHhhc--CceEEEEEEEC
Confidence 588999999 9998 99999999999998863210 13555555443
No 180
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.05 E-value=0.062 Score=39.35 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=36.3
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChh---hHHHcCCCcCceEE
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD---VFQMLRLNTAPIFM 135 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~---lf~~l~v~svP~l~ 135 (328)
+++|+.+ ||+.|...+..+++ .++-|-.+|++++++ +-+..|..++|.++
T Consensus 3 v~lys~~----~Cp~C~~ak~~L~~------------~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if 55 (72)
T cd03029 3 VSLFTKP----GCPFCARAKAALQE------------NGISYEEIPLGKDITGRSLRAVTGAMTVPQVF 55 (72)
T ss_pred EEEEECC----CCHHHHHHHHHHHH------------cCCCcEEEECCCChhHHHHHHHhCCCCcCeEE
Confidence 5778899 99999998776663 136677788877542 33345889999984
No 181
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.01 E-value=0.079 Score=39.84 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=42.3
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC-------------------------------
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE------------------------------- 118 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~------------------------------- 118 (328)
+.+|+.+ .|+.|..+.|.++++.+... +++.+....+.-
T Consensus 1 i~~f~d~----~Cp~C~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 70 (98)
T cd02972 1 IVEFFDP----LCPYCYLFEPELEKLLYADD------GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL 70 (98)
T ss_pred CeEEECC----CCHhHHhhhHHHHHHHhhcC------CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHH
Confidence 3567888 99999999999999974332 345444444322
Q ss_pred -ChhhHHHcCCCcCceEEEec
Q psy8428 119 -GSDVFQMLRLNTAPIFMHFP 138 (328)
Q Consensus 119 -~~~lf~~l~v~svP~l~~f~ 138 (328)
+.+..+++|++++|++++..
T Consensus 71 ~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 71 ADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHHHcCCCCCCEEEECC
Confidence 23567889999999999764
No 182
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.01 E-value=0.08 Score=38.93 Aligned_cols=50 Identities=12% Similarity=0.269 Sum_probs=38.0
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChh----hHHHcCCCcCceEE
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD----VFQMLRLNTAPIFM 135 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~----lf~~l~v~svP~l~ 135 (328)
+++|+.+ ||+.|+..+..+++ .++-|-.+|++++++ +.+..+-.++|+++
T Consensus 3 v~ly~~~----~C~~C~ka~~~L~~------------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~ 56 (73)
T cd03027 3 VTIYSRL----GCEDCTAVRLFLRE------------KGLPYVEINIDIFPERKAELEERTGSSVVPQIF 56 (73)
T ss_pred EEEEecC----CChhHHHHHHHHHH------------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 5678888 99999988776663 236677889988654 55566788999985
No 183
>KOG3414|consensus
Probab=94.98 E-value=0.33 Score=40.12 Aligned_cols=112 Identities=19% Similarity=0.237 Sum_probs=77.5
Q ss_pred HHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEE
Q psy8428 57 KEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMH 136 (328)
Q Consensus 57 ~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~ 136 (328)
++.+. +..+.-+++-|--. |=+.|-.+....++.|+... +-....-+|+++-++..+.|++...|++++
T Consensus 15 dqaI~-~t~~rlvViRFGr~----~Dp~C~~mD~~L~~i~~~vs------nfa~IylvdideV~~~~~~~~l~~p~tvmf 83 (142)
T KOG3414|consen 15 DQAIL-STEERLVVIRFGRD----WDPTCMKMDELLSSIAEDVS------NFAVIYLVDIDEVPDFVKMYELYDPPTVMF 83 (142)
T ss_pred HHHHh-cccceEEEEEecCC----CCchHhhHHHHHHHHHHHHh------hceEEEEEecchhhhhhhhhcccCCceEEE
Confidence 34443 33456678888887 99999999999999998874 457888999999999999999999999999
Q ss_pred ecCCCCC------CCCCceeeeecccCHHHHHHHHHhhc-----CCcceeeCCCCCc
Q psy8428 137 FPAKGKP------KPSDTLDIQRVGYSAEAIVKWIADRT-----DIQIRVFRPPNYS 182 (328)
Q Consensus 137 f~p~g~~------~~~~~~~~~~~~~~a~~l~~fl~~~t-----~~~i~i~~p~~~~ 182 (328)
|-.+.-. .++..+.+ .-.+.+++++-++-.- |.- -+..|.+|+
T Consensus 84 Ffn~kHmkiD~gtgdn~Kin~--~~~~kq~~Idiie~iyRga~KGKg-iV~sP~dy~ 137 (142)
T KOG3414|consen 84 FFNNKHMKIDLGTGDNNKINF--AFEDKQEFIDIIETIYRGARKGKG-IVQSPKDYS 137 (142)
T ss_pred EEcCceEEEeeCCCCCceEEE--EeccHHHHHHHHHHHHHhhhcCCe-EEECCcchH
Confidence 8765211 11222221 1235777777775422 222 234577765
No 184
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=94.96 E-value=0.13 Score=43.27 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=23.8
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHcc
Q psy8428 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFR 100 (328)
Q Consensus 68 ~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~ 100 (328)
.+++.|+++ .||+.|....+.+.++.+.+.
T Consensus 32 ~~ll~f~~~---~~~p~C~~~~~~l~~~~~~~~ 61 (154)
T PRK09437 32 RVLVYFYPK---AMTPGCTVQACGLRDNMDELK 61 (154)
T ss_pred CEEEEEECC---CCCCchHHHHHHHHHHHHHHH
Confidence 478888875 157779999999998888875
No 185
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=94.95 E-value=0.097 Score=42.93 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=30.4
Q ss_pred cEEEEEe-eCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECc
Q psy8428 68 SAIVMFT-ALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD 117 (328)
Q Consensus 68 ~vvV~ft-A~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~ 117 (328)
.++|.|+ +. ||+.|..-.|++.++.+++.. +++.|.-+..+
T Consensus 24 ~~ll~f~~~~----~c~~C~~~~~~l~~~~~~~~~-----~~~~~i~is~d 65 (140)
T cd02971 24 WVVLFFYPKD----FTPVCTTELCAFRDLAEEFAK-----GGAEVLGVSVD 65 (140)
T ss_pred eEEEEEeCCC----CCCcCHHHHHHHHHHHHHHHH-----CCCEEEEEeCC
Confidence 5777777 67 999999999999999998852 23444444444
No 186
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=94.89 E-value=0.2 Score=39.78 Aligned_cols=97 Identities=13% Similarity=0.303 Sum_probs=64.4
Q ss_pred eCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC--ChhhHHHcC
Q psy8428 51 FDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE--GSDVFQMLR 127 (328)
Q Consensus 51 L~~-~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~--~~~lf~~l~ 127 (328)
++| .+|++++. . |+ .|+|+|+.+. ..-..--..|.++|+... +.=-.+.+|+.+ ..++|++++
T Consensus 6 i~d~KdfKKLLR-T-r~-NVLvLy~ks~-----k~a~~~Lk~~~~~A~~vk------G~gT~~~vdCgd~e~kKLCKKlK 71 (112)
T cd03067 6 ISDHKDFKKLLR-T-RN-NVLVLYSKSA-----KSAEALLKLLSDVAQAVK------GQGTIAWIDCGDSESRKLCKKLK 71 (112)
T ss_pred ccchHHHHHHHh-h-cC-cEEEEEecch-----hhHHHHHHHHHHHHHHhc------CceeEEEEecCChHHHHHHHHHc
Confidence 444 58888874 2 22 4888887761 112222346777777665 456678889987 789999999
Q ss_pred CC----cCc-eEEEecCCCCCCCCCceeeeecccCHHHHHHHHHh
Q psy8428 128 LN----TAP-IFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (328)
Q Consensus 128 v~----svP-~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~ 167 (328)
+. --| .+.+|++|.= +.+|++ ..+...|+.|+++
T Consensus 72 v~~~~kp~~~~LkHYKdG~f---HkdYdR---~~t~kSmv~FlrD 110 (112)
T cd03067 72 VDPSSKPKPVELKHYKDGDF---HTEYNR---QLTFKSMVAFLRD 110 (112)
T ss_pred cCCCCCCCcchhhcccCCCc---cccccc---hhhHHHHHHHhhC
Confidence 99 445 4568888721 235653 5678889999865
No 187
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=94.71 E-value=0.083 Score=43.95 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=30.2
Q ss_pred cEEEEEe-eCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC
Q psy8428 68 SAIVMFT-ALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE 118 (328)
Q Consensus 68 ~vvV~ft-A~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~ 118 (328)
.+++.|+ ++ ||+.|..-.|+++++.+++.+ +++.+.-+..+.
T Consensus 30 ~~vl~f~~~~----~c~~C~~~~~~l~~~~~~~~~-----~~v~vi~vs~d~ 72 (149)
T cd03018 30 PVVLVFFPLA----FTPVCTKELCALRDSLELFEA-----AGAEVLGISVDS 72 (149)
T ss_pred eEEEEEeCCC----CCccHHHHHHHHHHHHHHHHh-----CCCEEEEecCCC
Confidence 3555555 88 999999999999999988863 235555555443
No 188
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=94.65 E-value=0.17 Score=44.87 Aligned_cols=107 Identities=12% Similarity=0.176 Sum_probs=61.9
Q ss_pred cEEEEEee-CCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEE--------------------------CcCCh
Q psy8428 68 SAIVMFTA-LAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVD--------------------------FDEGS 120 (328)
Q Consensus 68 ~vvV~ftA-~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD--------------------------~~~~~ 120 (328)
+++++||+ . ||+.|..-.+++.++++.+.+.+ -+++.+.+| .|...
T Consensus 38 ~~lL~F~p~~----~~~~C~~e~~~l~~~~~~f~~~g---~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~ 110 (199)
T PTZ00253 38 WVVLFFYPLD----FTFVCPTEIIQFSDSVKRFNELN---CEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTK 110 (199)
T ss_pred EEEEEEEcCC----CCCcCHHHHHHHHHHHHHHHHcC---CEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHh
Confidence 57778885 5 89999988899999998886310 012222222 22345
Q ss_pred hhHHHcCCC------cCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCc-ceeeCCCCCc
Q psy8428 121 DVFQMLRLN------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ-IRVFRPPNYS 182 (328)
Q Consensus 121 ~lf~~l~v~------svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~-i~i~~p~~~~ 182 (328)
++.+.||+. .+|+.+++.|.|.......++. ..+++.+++.+.|...-.+. -.+--|.||.
T Consensus 111 ~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~-~~~r~~~e~l~~l~a~~~~~~~~~~cp~~w~ 178 (199)
T PTZ00253 111 SIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDM-PVGRNVEEVLRLLEAFQFVEKHGEVCPANWK 178 (199)
T ss_pred HHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCC-CCCCCHHHHHHHHHhhhhHHhcCCEeCCCCC
Confidence 788888885 4688888887754311001111 13456777777775432211 1233456663
No 189
>PHA03050 glutaredoxin; Provisional
Probab=94.49 E-value=0.083 Score=42.54 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=36.7
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC---Ch----hhHHHcCCCcCceEEE
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE---GS----DVFQMLRLNTAPIFMH 136 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~---~~----~lf~~l~v~svP~l~~ 136 (328)
++.|+.+ ||+.|+.....+++..-.. --|-.+|+++ .+ ++.+.-|-++||.+++
T Consensus 15 V~vys~~----~CPyC~~ak~~L~~~~i~~---------~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 15 VTIFVKF----TCPFCRNALDILNKFSFKR---------GAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred EEEEECC----CChHHHHHHHHHHHcCCCc---------CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 6778999 9999999887766543111 1355666665 32 3556678889999953
No 190
>KOG3170|consensus
Probab=94.46 E-value=0.27 Score=43.77 Aligned_cols=118 Identities=15% Similarity=0.282 Sum_probs=84.0
Q ss_pred HHHHHHhhhh---CC---CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCc
Q psy8428 35 RVLHLSEMNA---KK---AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNK 108 (328)
Q Consensus 35 ~~~~L~~l~~---~~---~VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~ 108 (328)
|.++|.+|+. ++ .|.+++..+|-+.|+.....-+|+|-++.. +-+.|.-+.-.++.+|..|. .
T Consensus 74 R~kRl~E~r~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~----gvp~c~Ll~~~l~~la~kfp-------~ 142 (240)
T KOG3170|consen 74 RIKRLAEWRATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQ----GVPLCALLSHHLQSLACKFP-------Q 142 (240)
T ss_pred HHHHHHHHHHHHHHhcccceeeccchHHHHHHHhccCccEEEEEeecc----ccHHHHHHHHHHHHHhhcCC-------c
Confidence 4555555554 22 399999999999997666778899999998 88999999999999999884 6
Q ss_pred EEEEEEECcCC-hhhHHHcCCCcCceEEEecCCCCCCCCCceee-eecc--cCHHHHHHHHHhhc
Q psy8428 109 LFFILVDFDEG-SDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDI-QRVG--YSAEAIVKWIADRT 169 (328)
Q Consensus 109 v~F~~vD~~~~-~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~-~~~~--~~a~~l~~fl~~~t 169 (328)
+.|+++=.+.. |+ |-=.+.||+++|..| ..+.. -+.. .-|| .+.++++.++-+.-
T Consensus 143 iKFVki~at~cIpN----YPe~nlPTl~VY~~G-~lk~q-~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 143 IKFVKIPATTCIPN----YPESNLPTLLVYHHG-ALKKQ-MIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred ceEEecccccccCC----CcccCCCeEEEeecc-hHHhh-eehhhhhcCCcCCHHHHHHHHHhcc
Confidence 89999866652 22 223589999999887 22110 0110 0133 36899998887653
No 191
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.099 Score=39.66 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=37.9
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCCh-----hhHHHc-CCCcCceEEE
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS-----DVFQML-RLNTAPIFMH 136 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~-----~lf~~l-~v~svP~l~~ 136 (328)
++.|+-+ +|+.|+..+.-++ + ..+-|..+|+++++ +..++. |.+++|.+++
T Consensus 3 v~iyt~~----~CPyC~~ak~~L~----~--------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKP----GCPYCKRAKRLLD----R--------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECC----CCchHHHHHHHHH----H--------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5678888 9999998776554 1 35778888887754 455666 7899999985
No 192
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.38 E-value=0.23 Score=39.84 Aligned_cols=93 Identities=12% Similarity=0.184 Sum_probs=60.5
Q ss_pred hhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC----hhhHHHcCC
Q psy8428 53 GQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG----SDVFQMLRL 128 (328)
Q Consensus 53 ~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~----~~lf~~l~v 128 (328)
.+.+++++.++ .+.+++++=-++ .|+...+...+|++.++.-. +++-+..+|+-++ .++++++||
T Consensus 7 ~eql~~i~~~S-~~~~~~iFKHSt----~C~IS~~a~~~~e~~~~~~~------~~~~~y~l~v~~~R~vSn~IAe~~~V 75 (105)
T PF11009_consen 7 EEQLEEILEES-KEKPVLIFKHST----RCPISAMALREFEKFWEESP------DEIPVYYLDVIEYRPVSNAIAEDFGV 75 (105)
T ss_dssp HHHHHHHHHH----SEEEEEEE-T----T-HHHHHHHHHHHHHHHHHT----------EEEEEGGGGHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhc-ccCcEEEEEeCC----CChhhHHHHHHHHHHhhcCC------ccceEEEEEEEeCchhHHHHHHHhCC
Confidence 46788887543 345677777788 99999999999999987653 3489999999885 477999999
Q ss_pred Cc-CceEEEecCCCCCCCCCceeeeecccCHHHH
Q psy8428 129 NT-APIFMHFPAKGKPKPSDTLDIQRVGYSAEAI 161 (328)
Q Consensus 129 ~s-vP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l 161 (328)
++ =|.++++++|. ..++-.....++++|
T Consensus 76 ~HeSPQ~ili~~g~-----~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 76 KHESPQVILIKNGK-----VVWHASHWDITAEAL 104 (105)
T ss_dssp ---SSEEEEEETTE-----EEEEEEGGG-SHHHH
T ss_pred CcCCCcEEEEECCE-----EEEECccccCCHHhc
Confidence 96 89999999872 234433345566554
No 193
>PRK10638 glutaredoxin 3; Provisional
Probab=94.37 E-value=0.095 Score=39.65 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=37.3
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCCh----hhHHHcCCCcCceEEE
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS----DVFQMLRLNTAPIFMH 136 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~----~lf~~l~v~svP~l~~ 136 (328)
+++|+.+ ||+.|+.....+++. ++-+..+|+++++ ++.+.-|..++|++++
T Consensus 4 v~ly~~~----~Cp~C~~a~~~L~~~------------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKA----TCPFCHRAKALLNSK------------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECC----CChhHHHHHHHHHHc------------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5678888 999999988776632 3556778887764 3445568889998854
No 194
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=94.20 E-value=0.19 Score=44.34 Aligned_cols=40 Identities=5% Similarity=0.136 Sum_probs=31.2
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEEC
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDF 116 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~ 116 (328)
..++|.|+|+ ||++|++ .|+++++.+.|.. ..+.+.-+.+
T Consensus 26 KvvLVvf~AS----~C~~~~q-~~~L~~L~~~y~~-----~gl~Vlg~p~ 65 (183)
T PRK10606 26 NVLLIVNVAS----KCGLTPQ-YEQLENIQKAWAD-----QGFVVLGFPC 65 (183)
T ss_pred CEEEEEEEeC----CCCCcHH-HHHHHHHHHHHhh-----CCeEEEEeec
Confidence 4688999999 9999986 7799999998863 3466655554
No 195
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.90 E-value=0.2 Score=38.66 Aligned_cols=57 Identities=12% Similarity=0.151 Sum_probs=36.8
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhh----HHHcCCCcCceEEE
Q psy8428 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDV----FQMLRLNTAPIFMH 136 (328)
Q Consensus 68 ~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~l----f~~l~v~svP~l~~ 136 (328)
.|+|+-..+....||+.|+..+..++.. .+-|-.+|+++++++ .+.-|-+++|.+++
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQL------------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHc------------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 4555433322344999999887766532 366777888776544 44458889999853
No 196
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=93.06 E-value=1.1 Score=35.43 Aligned_cols=97 Identities=11% Similarity=0.237 Sum_probs=60.4
Q ss_pred EEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcC
Q psy8428 49 LRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (328)
Q Consensus 49 I~L~~-~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~ 127 (328)
.++++ ++.++++. ..+..++-+|...+. +....|.++|+... ++..|+... +.++..+++
T Consensus 3 ~~i~s~~~l~~f~~--~~~~~Vvg~f~~~~~--------~~~~~F~~vA~~~R------~d~~F~~~~---~~~~~~~~~ 63 (104)
T cd03069 3 VELRTEAEFEKFLS--DDDASVVGFFEDEDS--------KLLSEFLKAADTLR------ESFRFAHTS---DKQLLEKYG 63 (104)
T ss_pred cccCCHHHHHHHhc--cCCcEEEEEEcCCCc--------hHHHHHHHHHHhhh------hcCEEEEEC---hHHHHHhcC
Confidence 34433 45666653 345566666655421 56789999999886 346675433 356778888
Q ss_pred CCcCceEEEecCCC---CCCCCCceeeeecccCHHHHHHHHHhh
Q psy8428 128 LNTAPIFMHFPAKG---KPKPSDTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 128 v~svP~l~~f~p~g---~~~~~~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
+ -|++.+|.|.. +. ++....+ .|..+.++|.+||...
T Consensus 64 ~--~~~ivl~~p~~~~~k~-de~~~~y-~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 64 Y--GEGVVLFRPPRLSNKF-EDSSVKF-DGDLDSSKIKKFIREN 103 (104)
T ss_pred C--CCceEEEechhhhccc-Ccccccc-cCcCCHHHHHHHHHhh
Confidence 8 68899997631 11 1112222 3567889999999865
No 197
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=93.04 E-value=1.4 Score=34.64 Aligned_cols=98 Identities=15% Similarity=0.206 Sum_probs=61.3
Q ss_pred eEEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHc
Q psy8428 48 VLRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (328)
Q Consensus 48 VI~L~~-~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l 126 (328)
+.++++ +..++++. ...+..++-+|...+. .....|.++|+... ++..|+.. .++++...+
T Consensus 2 v~~i~~~~~~e~~~~-~~~~~~Vvg~f~~~~~--------~~~~~F~~vA~~~R------~d~~F~~~---~~~~~~~~~ 63 (102)
T cd03066 2 VEIINSERELQAFEN-IEDDIKLIGYFKSEDS--------EHYKAFEEAAEEFH------PYIKFFAT---FDSKVAKKL 63 (102)
T ss_pred ceEcCCHHHHHHHhc-ccCCeEEEEEECCCCC--------HHHHHHHHHHHhhh------cCCEEEEE---CcHHHHHHc
Confidence 456644 45777762 1245666666655421 46778999999885 34666432 344667777
Q ss_pred CCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhh
Q psy8428 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 127 ~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
++. -|.+.++++..+ ....+..+..+.+.|.+||...
T Consensus 64 ~~~-~~~i~l~~~~~e----~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 64 GLK-MNEVDFYEPFME----EPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCC-CCcEEEeCCCCC----CCcccCCCCCCHHHHHHHHHHh
Confidence 775 699999976311 1122223567899999999754
No 198
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.46 E-value=0.81 Score=47.15 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=52.5
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecCC
Q psy8428 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAK 140 (328)
Q Consensus 68 ~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~ 140 (328)
..++.|+.+ .|+.|.+++.-.+++|+ . ++++.+-..|..++++.+++|+++.+|++.+...+
T Consensus 368 v~l~~~~~~----~~~~~~e~~~~l~e~~~-~------s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~ 429 (555)
T TIGR03143 368 VTLLLFLDG----SNEKSAELQSFLGEFAS-L------SEKLNSEAVNRGEEPESETLPKITKLPTVALLDDD 429 (555)
T ss_pred EEEEEEECC----CchhhHHHHHHHHHHHh-c------CCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCC
Confidence 356778887 79999999999999883 3 26788888999999999999999999999998643
No 199
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=92.40 E-value=0.23 Score=45.98 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=30.8
Q ss_pred ChhhHHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHh
Q psy8428 119 GSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (328)
Q Consensus 119 ~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~ 167 (328)
|.++.+++|+++.|++++-.+.|. .....|-.++++|.+.+..
T Consensus 208 n~~l~~~lGv~GTPaiv~~d~~G~------~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 208 NQKLMDDLGANATPAIYYMDKDGT------LQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCC------EEEecCCCCHHHHHHHhCC
Confidence 567899999999999997764331 2223455678999888743
No 200
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=92.30 E-value=0.4 Score=37.63 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=31.8
Q ss_pred CCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhH----HHcCCCcCceEEE
Q psy8428 81 NCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVF----QMLRLNTAPIFMH 136 (328)
Q Consensus 81 ~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf----~~l~v~svP~l~~ 136 (328)
||+.|+....-+++. ++-|-.+|++++++.. +.-|-+++|.+++
T Consensus 26 ~Cp~C~~ak~lL~~~------------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 26 QCGFSARAVQILKAC------------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred CCchHHHHHHHHHHc------------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 999999887766542 2557788998776544 4456779999964
No 201
>KOG1752|consensus
Probab=91.39 E-value=0.72 Score=36.93 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=36.0
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC-hhhHHH----cCCCcCceEEE
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG-SDVFQM----LRLNTAPIFMH 136 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~-~~lf~~----l~v~svP~l~~ 136 (328)
+|.|+-+ ||+.|+.++..|.+ +. .+..+.++|-+++ .++-+. -|-+++|.+++
T Consensus 16 VVifSKs----~C~~c~~~k~ll~~----~~------v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 16 VVIFSKS----SCPYCHRAKELLSD----LG------VNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred EEEEECC----cCchHHHHHHHHHh----CC------CCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 5668888 99999998877776 32 2456666666653 344333 33569999986
No 202
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=91.27 E-value=0.48 Score=39.07 Aligned_cols=29 Identities=24% Similarity=0.317 Sum_probs=24.4
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHc
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSF 99 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~ 99 (328)
-..++.|+.+ +|++|+.+.|+++++.+.+
T Consensus 6 ~~~i~~f~D~----~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 6 DVTIVEFFDY----NCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CEEEEEEECC----CChhHHHhhHHHHHHHHHC
Confidence 4577888888 9999999999999877654
No 203
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=90.03 E-value=0.48 Score=47.06 Aligned_cols=51 Identities=20% Similarity=0.436 Sum_probs=37.6
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChh---hHHH---------cCCCcCceEEE
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD---VFQM---------LRLNTAPIFMH 136 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~---lf~~---------l~v~svP~l~~ 136 (328)
|+.||.+ ||+.|+..+.-+++ .++-|-.+|+++.++ ..++ .|.+++|++++
T Consensus 4 V~vys~~----~Cp~C~~aK~~L~~------------~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKT----NCPFCDLAKSWFGA------------NDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCC----CCHHHHHHHHHHHH------------CCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999 99999987765443 247788899987663 2223 37889999975
No 204
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=88.72 E-value=5.2 Score=31.86 Aligned_cols=100 Identities=16% Similarity=0.268 Sum_probs=58.4
Q ss_pred eEEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHc
Q psy8428 48 VLRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (328)
Q Consensus 48 VI~L~~-~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l 126 (328)
+.++++ ++.++++. ...+..++-+|...++ .....|.++|+... ++..|+.. .+.++++++
T Consensus 2 v~~i~s~~ele~f~~-~~~~~~VVG~F~~~~~--------~~~~~F~~vA~~~R------dd~~F~~t---~~~~~~~~~ 63 (107)
T cd03068 2 SKQLQTLKQVQEFLR-DGDDVIIIGVFSGEED--------PAYQLYQDAANSLR------EDYKFHHT---FDSEIFKSL 63 (107)
T ss_pred ceEcCCHHHHHHHHh-cCCCEEEEEEECCCCC--------HHHHHHHHHHHhcc------cCCEEEEE---ChHHHHHhc
Confidence 345544 45667653 3224556566655421 46778999999886 35667443 345777888
Q ss_pred CCCcCceEEEecCC---CCCCCCCceeeeecc-cCHHH-HHHHHHhh
Q psy8428 127 RLNTAPIFMHFPAK---GKPKPSDTLDIQRVG-YSAEA-IVKWIADR 168 (328)
Q Consensus 127 ~v~svP~l~~f~p~---g~~~~~~~~~~~~~~-~~a~~-l~~fl~~~ 168 (328)
++. -|.+.+|.|. .+. ++....+ .+. .+.++ |.+|++++
T Consensus 64 ~~~-~~~vvl~rp~~~~~k~-e~~~~~~-~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 64 KVS-PGQLVVFQPEKFQSKY-EPKSHVL-NKKDSTSEDELKDFFKEH 107 (107)
T ss_pred CCC-CCceEEECcHHHhhhc-Ccceeee-eccccchHHHHHHHHhcC
Confidence 886 5778888775 121 2222333 233 35545 99999763
No 205
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=88.41 E-value=1.2 Score=37.15 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=38.4
Q ss_pred EECcCChhhHHHcCCCcCceEEEecCCC-----CCCCCCceeeeecccCHHHHHHHHHhh
Q psy8428 114 VDFDEGSDVFQMLRLNTAPIFMHFPAKG-----KPKPSDTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 114 vD~~~~~~lf~~l~v~svP~l~~f~p~g-----~~~~~~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
..+.-+|.+|++|+|+.||++++-+++. .......|+.-.|..+.+.-.+.+++.
T Consensus 55 ~~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred CcEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 4455589999999999999999998762 011223566656767766666666644
No 206
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=88.19 E-value=1.7 Score=35.26 Aligned_cols=71 Identities=11% Similarity=0.242 Sum_probs=44.2
Q ss_pred hhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCc
Q psy8428 53 GQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAP 132 (328)
Q Consensus 53 ~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP 132 (328)
++..++++.+.. ++.+.+.|-.-.++ .+.+..+.+.+-..+. ++. ..+.-+|.+|++|+|+.||
T Consensus 10 ~~~L~~l~~~a~-~~~~~~V~RG~~~g-------~~~~t~~~~~~l~~~~----~~~----~~v~IdP~~F~~y~I~~VP 73 (113)
T PF09673_consen 10 DASLRNLLKQAE-RAGVVVVFRGFPDG-------SFKPTAKAIQELLRKD----DPC----PGVQIDPRLFRQYNITAVP 73 (113)
T ss_pred HHHHHHHHHHHH-hCCcEEEEECCCCC-------CHHHHHHHHHHHhhcc----CCC----cceeEChhHHhhCCceEcC
Confidence 344444443222 22455555544222 5777777776655432 111 5566689999999999999
Q ss_pred eEEEecC
Q psy8428 133 IFMHFPA 139 (328)
Q Consensus 133 ~l~~f~p 139 (328)
++++-++
T Consensus 74 a~V~~~~ 80 (113)
T PF09673_consen 74 AFVVVKD 80 (113)
T ss_pred EEEEEcC
Confidence 9999988
No 207
>PRK10824 glutaredoxin-4; Provisional
Probab=88.05 E-value=0.87 Score=37.14 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=35.3
Q ss_pred cEEEEEeeCCC-CCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhH----HHcCCCcCceEEE
Q psy8428 68 SAIVMFTALAP-QRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVF----QMLRLNTAPIFMH 136 (328)
Q Consensus 68 ~vvV~ftA~~~-~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf----~~l~v~svP~l~~ 136 (328)
.|+| |...+| ..+|+.|+.....++... +.|..+|+++++++. +.-|-.++|.+++
T Consensus 16 ~Vvv-f~Kg~~~~p~Cpyc~~ak~lL~~~~------------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 16 PILL-YMKGSPKLPSCGFSAQAVQALSACG------------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred CEEE-EECCCCCCCCCchHHHHHHHHHHcC------------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 3555 444222 349999999887766542 334456777665443 3346779999986
No 208
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=87.00 E-value=4.5 Score=33.72 Aligned_cols=69 Identities=25% Similarity=0.332 Sum_probs=54.0
Q ss_pred HHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCce-EE
Q psy8428 57 KEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPI-FM 135 (328)
Q Consensus 57 ~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~-l~ 135 (328)
++.++ +..+.-+++-|--. |=+.|.++.....+.|+.-. +-..+..+|+++-|+.-+.|.+. -|. ++
T Consensus 12 DqAI~-~e~drvvViRFG~d----~d~~Cm~mDeiL~~~a~~v~------~~a~IY~vDi~~Vpdfn~~yel~-dP~tvm 79 (133)
T PF02966_consen 12 DQAIL-SEEDRVVVIRFGRD----WDPVCMQMDEILYKIAEKVK------NFAVIYLVDIDEVPDFNQMYELY-DPCTVM 79 (133)
T ss_dssp HHHHH-H-SSSEEEEEEE-T----TSHHHHHHHHHHHHHHHHHT------TTEEEEEEETTTTHCCHHHTTS--SSEEEE
T ss_pred HHHHh-ccCceEEEEEeCCC----CCccHHHHHHHHHHHHHHhh------cceEEEEEEcccchhhhcccccC-CCeEEE
Confidence 44554 23466788899888 99999999999999998764 45889999999999999999999 775 55
Q ss_pred Ee
Q psy8428 136 HF 137 (328)
Q Consensus 136 ~f 137 (328)
+|
T Consensus 80 FF 81 (133)
T PF02966_consen 80 FF 81 (133)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 209
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=86.37 E-value=2.3 Score=35.52 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=36.0
Q ss_pred CCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC
Q psy8428 64 PRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG 119 (328)
Q Consensus 64 ~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~ 119 (328)
|..-.+|+.|... .|++|+.+.+++.++-+.+-. .+++.|.-.++...
T Consensus 10 ~~a~~~v~~f~d~----~Cp~C~~~~~~~~~~~~~~i~----~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 10 PDAPITVTEFFDF----QCPHCAKFHEELEKLLKKYID----PGKVKFVFRPVPLD 57 (162)
T ss_dssp TTTSEEEEEEE-T----TSHHHHHHHHHHHHHHHHHTT----TTTEEEEEEESSSS
T ss_pred CCCCeEEEEEECC----CCHhHHHHHHHHhhhhhhccC----CCceEEEEEEcccc
Confidence 3344577888888 999999999999988888732 25788888877543
No 210
>PTZ00062 glutaredoxin; Provisional
Probab=84.33 E-value=6.1 Score=35.47 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=36.7
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhH----HHcCCCcCceEEE
Q psy8428 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVF----QMLRLNTAPIFMH 136 (328)
Q Consensus 68 ~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf----~~l~v~svP~l~~ 136 (328)
.++|+--.+...-+|+.|+.....+++. ++.|..+|+++.+++. +.-|-.++|.+++
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~------------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSS------------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHc------------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 4555443322234999999887766632 3667788998766543 3346678999885
No 211
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=84.13 E-value=21 Score=28.90 Aligned_cols=108 Identities=16% Similarity=0.088 Sum_probs=70.1
Q ss_pred EeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHH----H
Q psy8428 50 RFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQ----M 125 (328)
Q Consensus 50 ~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~----~ 125 (328)
+|+.+|+-+.-. .+-+-..++.|--+ .-+-=.+|-+..++||+.+.+ +.++-|.-+|-++-|-+.. .
T Consensus 5 kl~~~~m~e~we-dd~~g~~IvAFaee----~dpdG~eFl~ilk~vA~~nt~----np~LsiIWIDPD~FPllv~yWekt 75 (120)
T cd03074 5 KLKPENMFETWE-DDLDGIHIVAFAEE----EDPDGYEFLEILKEVARDNTD----NPDLSIIWIDPDDFPLLVPYWEKT 75 (120)
T ss_pred hccHHHHHHhhh-cccCCceEEEEecc----CCccHHHHHHHHHHHHHhcCc----CCCceEEEECCccCchhhHHHHhh
Confidence 466777666653 33344466767555 555678999999999999874 3679999999999776553 3
Q ss_pred cCCC-cCceEEEecCCCCCCCCCceeeeec--ccCHHHHHHHHHhh
Q psy8428 126 LRLN-TAPIFMHFPAKGKPKPSDTLDIQRV--GYSAEAIVKWIADR 168 (328)
Q Consensus 126 l~v~-svP~l~~f~p~g~~~~~~~~~~~~~--~~~a~~l~~fl~~~ 168 (328)
|+|. +=|.+=+..... .++.-++.... --++++|.+|+...
T Consensus 76 F~IDl~~PqIGVV~vtd--adSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 76 FGIDLFRPQIGVVNVTD--ADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred cCcccCCCceeeEeccc--ccceeEecccccccCcHHHHHHHHHhh
Confidence 4443 247777766542 11222332111 24689999999865
No 212
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=78.67 E-value=2.1 Score=38.11 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=27.9
Q ss_pred EEEEEeeCCCCCCCccchhhHHHH---HHHHHHcccccCCCCcEEEEEEEC
Q psy8428 69 AIVMFTALAPQRNCHICVSASDEY---TIVANSFRYSQMYSNKLFFILVDF 116 (328)
Q Consensus 69 vvV~ftA~~~~~~C~~C~~~~pef---~~vA~s~~~~~~~~~~v~F~~vD~ 116 (328)
.|+.|..- .|++|..++|.+ +.+-+.+. +++.|.++.+
T Consensus 40 ~VvEffdy----~CphC~~~~~~l~~~~~~~~~~~------~~v~~~~~~~ 80 (207)
T PRK10954 40 QVLEFFSF----YCPHCYQFEEVYHVSDNVKKKLP------EGTKMTKYHV 80 (207)
T ss_pred eEEEEeCC----CCccHHHhcccccchHHHHHhCC------CCCeEEEecc
Confidence 47888888 999999999977 66666653 3456665554
No 213
>KOG4277|consensus
Probab=78.49 E-value=11 Score=35.90 Aligned_cols=82 Identities=13% Similarity=0.134 Sum_probs=55.6
Q ss_pred CCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecCCCCCCCCCceeeeec---ccC
Q psy8428 81 NCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRV---GYS 157 (328)
Q Consensus 81 ~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~---~~~ 157 (328)
+..+-+++...-+++|+.+.+.....++..|+.+|-.+-..... +.--+.||+++|.-.. .+|-.... -.+
T Consensus 266 ns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nqil-M~als~P~l~i~Ntsn-----qeYfLse~d~qikn 339 (468)
T KOG4277|consen 266 NSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQIL-MAALSEPHLFIFNTSN-----QEYFLSEDDPQIKN 339 (468)
T ss_pred CcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHHHH-HHhhcCCeEEEEecCc-----hheeeccCChhhhh
Confidence 56678899999999999987532234679999999887322111 1223799999997651 33433221 346
Q ss_pred HHHHHHHHHhh
Q psy8428 158 AEAIVKWIADR 168 (328)
Q Consensus 158 a~~l~~fl~~~ 168 (328)
.+++.+|+++.
T Consensus 340 iedilqFient 350 (468)
T KOG4277|consen 340 IEDILQFIENT 350 (468)
T ss_pred HHHHHHHHhcc
Confidence 89999999874
No 214
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=77.64 E-value=3.6 Score=34.90 Aligned_cols=29 Identities=10% Similarity=0.258 Sum_probs=25.2
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHc
Q psy8428 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSF 99 (328)
Q Consensus 67 y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~ 99 (328)
-..++.|+.. .|++|+.+++..+.+.+.+
T Consensus 16 ~~~i~~f~D~----~Cp~C~~~~~~~~~~~~~~ 44 (178)
T cd03019 16 KPEVIEFFSY----GCPHCYNFEPILEAWVKKL 44 (178)
T ss_pred CcEEEEEECC----CCcchhhhhHHHHHHHHhC
Confidence 3567888888 9999999999999888776
No 215
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=76.83 E-value=7.7 Score=32.96 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=37.3
Q ss_pred EEEEEeeC-CCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChh----hHHHcCC----CcCceEEE
Q psy8428 69 AIVMFTAL-APQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD----VFQMLRL----NTAPIFMH 136 (328)
Q Consensus 69 vvV~ftA~-~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~----lf~~l~v----~svP~l~~ 136 (328)
|+++.|+. +-+.+|+.|+..+..++. .++.|-..|++.+++ +.+.++- .++|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~------------~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILES------------FRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHH------------CCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 45555542 235689999988776653 247788899987654 4444554 68998875
No 216
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=75.91 E-value=7.1 Score=35.02 Aligned_cols=76 Identities=16% Similarity=0.259 Sum_probs=47.9
Q ss_pred EEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCcc-chhhHHHHHHHHHHcccccCCCCcEEEEEEECcC-ChhhHHHc
Q psy8428 49 LRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHI-CVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE-GSDVFQML 126 (328)
Q Consensus 49 I~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~-C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~-~~~lf~~l 126 (328)
.++++.+=+.+....-++.+++|+|.=+ .|+. |...-.+...+-+........+=++.|+.+|=+. .|+..++|
T Consensus 50 f~l~d~~G~~~~~~~l~Gk~~lv~FgyT----~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y 125 (207)
T COG1999 50 FELTDQDGKPFTLKDLKGKPSLVFFGYT----HCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY 125 (207)
T ss_pred eeeecCCCCEeeccccCCCEEEEEeecC----CCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence 4444443233332223456678888777 8987 9998888888777665222222246777777765 68888887
Q ss_pred CC
Q psy8428 127 RL 128 (328)
Q Consensus 127 ~v 128 (328)
.-
T Consensus 126 ~~ 127 (207)
T COG1999 126 AE 127 (207)
T ss_pred hc
Confidence 76
No 217
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=71.48 E-value=18 Score=28.90 Aligned_cols=57 Identities=23% Similarity=0.423 Sum_probs=35.2
Q ss_pred CCCCCchhHHHHHHHHHHHhhhhe-eccccchhcchhhHHHHHHHHHHHHhhhhhhhhhcCCCceeccCCc---eEEEcC
Q psy8428 177 RPPNYSGPMAFIMLFAIVAVFLYV-KRNNLEFLYNKLMWGVAAVLFCFAMISGQMWNHIRGPPFIHKNQNG---IAYIHG 252 (328)
Q Consensus 177 ~p~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~~~r~~w~~~sl~~i~~~isG~mfn~Ir~~P~~~~~~~G---~~y~~~ 252 (328)
.|+||++.+....+.+.+++++++ .|+.+|- +| +.||.-|.-|.=+|| |.|..+
T Consensus 3 pPpd~sk~~l~~aiG~~lal~i~~ltr~tlPh-------------------vG---DniH~LPhGG~YrDGTK~I~Y~~P 60 (104)
T PF01307_consen 3 PPPDYSKSYLAAAIGVSLALIIFTLTRSTLPH-------------------VG---DNIHSLPHGGRYRDGTKSINYNSP 60 (104)
T ss_pred CcCCCccchhHHHHHHHHHHHHHHhhcCCCCC-------------------CC---CCCCCCCCCCcccCCCcEEEeCCC
Confidence 478998766654433333333333 3443332 12 559999998877777 899887
Q ss_pred CCc
Q psy8428 253 SSQ 255 (328)
Q Consensus 253 g~~ 255 (328)
+..
T Consensus 61 ~~~ 63 (104)
T PF01307_consen 61 NKL 63 (104)
T ss_pred CCC
Confidence 765
No 218
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=67.18 E-value=9.8 Score=32.96 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=35.7
Q ss_pred CccEEEEEeeCCCCCCCcc-chhhHHHHHHHHHHcccccCCCCcEEEEEEECc-CChhhHHHcC
Q psy8428 66 NYSAIVMFTALAPQRNCHI-CVSASDEYTIVANSFRYSQMYSNKLFFILVDFD-EGSDVFQMLR 127 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~-C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~-~~~~lf~~l~ 127 (328)
+..++|.|.-+ .|+. |........++.+..... ..+-++.|..+|-+ |.|+..++|.
T Consensus 52 Gk~~lv~F~yT----~CpdvCp~~l~~l~~~~~~l~~~-~~~v~~v~ISvDP~~DTp~~L~~Y~ 110 (174)
T PF02630_consen 52 GKWVLVFFGYT----RCPDVCPTTLANLSQLQKQLGEE-GKDVQFVFISVDPERDTPEVLKKYA 110 (174)
T ss_dssp TSEEEEEEE-T----TSSSHHHHHHHHHHHHHHHHHHT-TTTEEEEEEESSTTTC-HHHHHHHH
T ss_pred CCeEEEEEEEc----CCCccCHHHHHHHHHHHHHhhhc-cCceEEEEEEeCCCCCCHHHHHHHH
Confidence 44677777777 8966 999999999988887643 11223455555544 3576666643
No 219
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=62.19 E-value=27 Score=26.01 Aligned_cols=62 Identities=6% Similarity=0.083 Sum_probs=43.1
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecCC
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAK 140 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~ 140 (328)
+-+|-|. .-+..+..-...+++-+.+. .++.-+=.+|+.++|++++..+|-..||++=--|.
T Consensus 4 L~Lyv~g----~tp~S~~ai~nl~~i~e~~l-----~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P~ 65 (72)
T cd02978 4 LRLYVAG----RTPKSERALQNLKRILEELL-----GGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLPP 65 (72)
T ss_pred EEEEECC----CCchHHHHHHHHHHHHHHhc-----CCcEEEEEEEcccCHhHHhhCCEEEechhhhcCCC
Confidence 4444444 33444555555555555553 36788999999999999999999999998855443
No 220
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=61.12 E-value=1.6e+02 Score=28.82 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=70.6
Q ss_pred CCchHHHHHHHHhhhhCCCeEEeChhh-HHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCC
Q psy8428 29 SLSLGDRVLHLSEMNAKKAVLRFDGQK-YKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSN 107 (328)
Q Consensus 29 ~~~~~~~~~~L~~l~~~~~VI~L~~~n-f~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~ 107 (328)
|.-.++..-+++.--.+++|-.+|++. .+.+- +-..+--++=+|-+. ... --.+|+.+|..++ .
T Consensus 129 G~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe-~ied~~klIGyFk~~----~s~----~yk~FeeAAe~F~------p 193 (383)
T PF01216_consen 129 GERSADTLVEFLLDLLEDPVEIINNKHELKAFE-RIEDDIKLIGYFKSE----DSE----HYKEFEEAAEHFQ------P 193 (383)
T ss_dssp S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHH-H--SS-EEEEE-SST----TSH----HHHHHHHHHHHCT------T
T ss_pred CccCHHHHHHHHHHhcccchhhhcChhhhhhhh-hcccceeEEEEeCCC----CcH----HHHHHHHHHHhhc------C
Confidence 555667666666555678887787752 22221 111122344456554 222 3457899998886 3
Q ss_pred cEEEEEEECcCChhhHHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCcceeeCCCC
Q psy8428 108 KLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQIRVFRPPN 180 (328)
Q Consensus 108 ~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~i~i~~p~~ 180 (328)
-+.|+. .-++.++++++++ .=.+-+|.|=- .+...++..+.+.+++.+|++++-....+--+|.|
T Consensus 194 ~IkFfA---tfd~~vAk~L~lK-~nev~fyepF~----~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~ 258 (383)
T PF01216_consen 194 YIKFFA---TFDKKVAKKLGLK-LNEVDFYEPFM----DEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPED 258 (383)
T ss_dssp TSEEEE---E-SHHHHHHHT-S-TT-EEEE-TTS----SSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGG
T ss_pred ceeEEE---EecchhhhhcCcc-ccceeeecccc----CCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhh
Confidence 344432 2368899999997 77788887741 13345555677899999999998776665555655
No 221
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=60.08 E-value=17 Score=32.58 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=31.3
Q ss_pred CcCChhhHHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHh
Q psy8428 116 FDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (328)
Q Consensus 116 ~~~~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~ 167 (328)
+.-+|.+|++|+|+.||++++--. ..||.-.|..+.++=.+.+++
T Consensus 148 v~IDP~lF~~F~I~~VPafVv~C~-------~~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 148 VQIDPTLFSQYGIRSVPALVVFCS-------QGYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred eeECHHHHHhcCCccccEEEEEcC-------CCCCEEEecccHHHHHHHHHh
Confidence 334899999999999999999632 235554566665555555554
No 222
>KOG2640|consensus
Probab=57.22 E-value=6.7 Score=37.35 Aligned_cols=106 Identities=15% Similarity=0.250 Sum_probs=73.6
Q ss_pred eEEeChhhHHHHH--HcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHH
Q psy8428 48 VLRFDGQKYKEYI--KNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (328)
Q Consensus 48 VI~L~~~nf~~~v--~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (328)
.++.+++--+... ..++.+-++-..|++. ||+.-+..+|+|+-...-+.+ . -.|+.=|...-++++.+
T Consensus 56 ~~e~~~~~l~~l~~~ih~n~~~~vs~~fy~s----~C~fsr~~~~~fd~~~sl~~~-----i-~h~~vee~~~lpsv~s~ 125 (319)
T KOG2640|consen 56 AIEVDGDCLQVLLDAIHGNKNDYVSLLFYAS----WCPFSRAVRPEFDVRSSLFSS-----I-QHFAVEESQALPSVFSS 125 (319)
T ss_pred hhhcccchhhHHHHhhccccCCcccccchhc----ccCcccccCcccchhhhhccc-----c-ccccHHHHhhcccchhc
Confidence 3555555333332 1233344577889999 999999999999988866541 1 12332234446899999
Q ss_pred cCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcC
Q psy8428 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (328)
Q Consensus 126 l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~ 170 (328)
+++.+-|++....+.-. ..| .+..+...|++|..+.++
T Consensus 126 ~~~~~~ps~~~~n~t~~----~~~---~~~r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 126 YGIHSEPSNLMLNQTCP----ASY---RGERDLASLVNFYTEITP 163 (319)
T ss_pred cccccCCcceeeccccc----hhh---cccccHHHHHHHHHhhcc
Confidence 99999999999877621 122 366788999999999997
No 223
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=56.00 E-value=40 Score=26.09 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=43.8
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecCC
Q psy8428 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAK 140 (328)
Q Consensus 68 ~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~ 140 (328)
+++=+|-|. .-+..++.-...+++-+.+. .+..-.=.+|+.++|++++.++|-..||++=--|.
T Consensus 4 ~~LrLyvag----~~p~S~~ai~nl~~i~e~~l-----~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~ 67 (87)
T TIGR02654 4 YVLKLYVAG----NTPNSVRALKTLKNILETEF-----QGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP 67 (87)
T ss_pred EEEEEEEeC----CCchHHHHHHHHHHHHHHhc-----CCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC
Confidence 345344444 34445555555565555544 24577888999999999999999999998855443
No 224
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=53.86 E-value=40 Score=24.28 Aligned_cols=74 Identities=9% Similarity=0.192 Sum_probs=42.0
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC--ChhhHHHcCCCcCceEEEecCCCCCCCCC
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE--GSDVFQMLRLNTAPIFMHFPAKGKPKPSD 147 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~--~~~lf~~l~v~svP~l~~f~p~g~~~~~~ 147 (328)
+.+|+.+ .|+.|+..+-..+.. .+-|-.++++. .+++ +.-+-..+|++..=..++ .
T Consensus 2 i~Ly~~~----~~p~c~kv~~~L~~~------------gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~-----~ 59 (77)
T cd03040 2 ITLYQYK----TCPFCCKVRAFLDYH------------GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGD-----G 59 (77)
T ss_pred EEEEEcC----CCHHHHHHHHHHHHC------------CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCC-----c
Confidence 3467777 899999877443322 23333334432 2333 445566899886421110 0
Q ss_pred ceeeeecccCHHHHHHHHHhhcC
Q psy8428 148 TLDIQRVGYSAEAIVKWIADRTD 170 (328)
Q Consensus 148 ~~~~~~~~~~a~~l~~fl~~~t~ 170 (328)
. .-.+...+.+||.+++|
T Consensus 60 ~-----~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 60 Q-----QLVDSSVIISTLKTYLG 77 (77)
T ss_pred c-----EEEcHHHHHHHHHHHcC
Confidence 0 12367889999998875
No 225
>PRK09301 circadian clock protein KaiB; Provisional
Probab=52.46 E-value=51 Score=26.32 Aligned_cols=66 Identities=9% Similarity=0.064 Sum_probs=44.5
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecCC
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAK 140 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~ 140 (328)
..+++=+|-|. .-+.-++.-...+++-+.+. .+..-.=.+|+.++|++++.++|-..||++=--|.
T Consensus 5 ~~~~LrLyVag----~tp~S~~ai~nL~~icE~~l-----~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~ 70 (103)
T PRK09301 5 KTYILKLYVAG----NTPNSVRALKTLKNILETEF-----KGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP 70 (103)
T ss_pred ceEEEEEEEeC----CCchHHHHHHHHHHHHHHhc-----CCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC
Confidence 34455444454 34445555555555555543 24577888999999999999999999998855443
No 226
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=51.09 E-value=15 Score=33.83 Aligned_cols=61 Identities=21% Similarity=0.442 Sum_probs=44.3
Q ss_pred CCeEEeChhhHHHHH--HcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC
Q psy8428 46 KAVLRFDGQKYKEYI--KNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE 118 (328)
Q Consensus 46 ~~VI~L~~~nf~~~v--~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~ 118 (328)
++|+++++++..++. ..+.| ++|+.|-+- .|++=..=.++|+++++.|. +..-|..|.++|
T Consensus 82 s~vv~l~g~~~~~ildf~~g~R--PLVlnFGS~----TCPpF~~~l~~f~~l~~~f~------d~adFl~VYI~E 144 (237)
T PF00837_consen 82 SPVVTLDGQRSCRILDFAKGNR--PLVLNFGSC----TCPPFMAKLDAFKRLVEDFS------DVADFLIVYIEE 144 (237)
T ss_pred CceEeeCCCcceeHHHhccCCC--CeEEEcccc----cchHHHHHHHHHHHHHHHhh------hhhheehhhHhh
Confidence 459999998743333 13544 689999888 89998888999999999986 234455555554
No 227
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=49.36 E-value=14 Score=28.89 Aligned_cols=88 Identities=16% Similarity=0.274 Sum_probs=47.7
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC----hhhHHHcCCCcCceEEEecCCCCCCCC
Q psy8428 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG----SDVFQMLRLNTAPIFMHFPAKGKPKPS 146 (328)
Q Consensus 71 V~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~----~~lf~~l~v~svP~l~~f~p~g~~~~~ 146 (328)
.+|+.+ +|+.|+....-+++ .++-|-.+|+.++ .++.+-++-.+.+.--++...+..-
T Consensus 2 ~iY~~~----~C~~c~ka~~~L~~------------~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~-- 63 (105)
T cd02977 2 TIYGNP----NCSTSRKALAWLEE------------HGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPY-- 63 (105)
T ss_pred EEEECC----CCHHHHHHHHHHHH------------cCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchH--
Confidence 467888 99999987654442 2466777787653 2444444444433333444332210
Q ss_pred Cceeee-ecccCHHHHHHHHHhhcCCcceeeCCC
Q psy8428 147 DTLDIQ-RVGYSAEAIVKWIADRTDIQIRVFRPP 179 (328)
Q Consensus 147 ~~~~~~-~~~~~a~~l~~fl~~~t~~~i~i~~p~ 179 (328)
.+.... ....+.+++.+.+.++-.. ++||.
T Consensus 64 ~~l~~~~~~~ls~~e~~~~l~~~p~L---ikRPi 94 (105)
T cd02977 64 RKLGLADKDELSDEEALELMAEHPKL---IKRPI 94 (105)
T ss_pred HHcCCccccCCCHHHHHHHHHhCcCe---eeCCE
Confidence 111111 1346678888888776432 56664
No 228
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=49.16 E-value=28 Score=29.84 Aligned_cols=68 Identities=15% Similarity=0.271 Sum_probs=43.3
Q ss_pred HHHHHHHhhcCCcceeeCCCCCchhHHHHHHHHHHHhhhheeccccc-hhcchhhHHHHHHHHHHHHhh
Q psy8428 160 AIVKWIADRTDIQIRVFRPPNYSGPMAFIMLFAIVAVFLYVKRNNLE-FLYNKLMWGVAAVLFCFAMIS 227 (328)
Q Consensus 160 ~l~~fl~~~t~~~i~i~~p~~~~~~~~~~~~~~~~~~~~~~~k~~~~-~~~~r~~w~~~sl~~i~~~is 227 (328)
+--++-.+..|..+++-.-+.|...+.++.+.+.==..++++....+ .++++++|.-.++..++++++
T Consensus 34 ~~Y~~yr~~~G~~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~ 102 (153)
T PF03383_consen 34 EGYEEYRQFFGKEVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFIS 102 (153)
T ss_pred hHHHHHHHHhCCEEeeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHH
Confidence 33344567779888887777777666655555431112234444443 589999999888777777664
No 229
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=48.24 E-value=41 Score=23.91 Aligned_cols=51 Identities=10% Similarity=0.262 Sum_probs=31.6
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC-ChhhHHHcCCCcCceEE
Q psy8428 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE-GSDVFQMLRLNTAPIFM 135 (328)
Q Consensus 71 V~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~-~~~lf~~l~v~svP~l~ 135 (328)
.+++.+ +|+.|+..+-..++.. -+.-...+|..+ .+++.+.-....+|++.
T Consensus 2 ~ly~~~----~~p~~~rv~~~L~~~g----------l~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFR----RCPYAMRARMALLLAG----------ITVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecC----CCcHHHHHHHHHHHcC----------CCcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 456777 9999987654433221 123445566544 35666666778899985
No 230
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=47.73 E-value=33 Score=28.32 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=27.8
Q ss_pred ChhhHHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHh
Q psy8428 119 GSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (328)
Q Consensus 119 ~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~ 167 (328)
..+..++.||+++|++++ .| + .+ .+..+.+++.+.|.+
T Consensus 125 ~~~~~~~~~i~~tPt~~i--nG-~-----~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 125 DSQLARQLGITGTPTFFI--NG-K-----YV---VGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHHHT-SSSSEEEE--TT-C-----EE---ETTTSHHHHHHHHHH
T ss_pred HHHHHHHcCCccccEEEE--CC-E-----Ee---CCCCCHHHHHHHHcC
Confidence 446679999999999998 33 1 22 467889999988864
No 231
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=46.39 E-value=1e+02 Score=25.03 Aligned_cols=88 Identities=16% Similarity=0.277 Sum_probs=52.9
Q ss_pred CCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC-hhhHHHcCC--CcCceEEEecCCCCCCCCCceeeeec
Q psy8428 78 PQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG-SDVFQMLRL--NTAPIFMHFPAKGKPKPSDTLDIQRV 154 (328)
Q Consensus 78 ~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~-~~lf~~l~v--~svP~l~~f~p~g~~~~~~~~~~~~~ 154 (328)
.++-|++|..++-.....-. -..++-+..||+..- .++.+.+|= ||.|.+++=.....+.+...+.-..-
T Consensus 20 ~~f~Cp~c~~iEGlLa~~P~-------l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rf 92 (112)
T PF11287_consen 20 QRFYCPHCAAIEGLLASFPD-------LRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRF 92 (112)
T ss_pred ceEECCchHHHHhHHhhChh-------hhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEE
Confidence 34679999988765432221 124688999999984 566777764 68999875432211111111110001
Q ss_pred ccCHHHHHHHHHhhcCCc
Q psy8428 155 GYSAEAIVKWIADRTDIQ 172 (328)
Q Consensus 155 ~~~a~~l~~fl~~~t~~~ 172 (328)
-.+++.|.+.++++-|+.
T Consensus 93 i~d~~~I~~~La~r~g~p 110 (112)
T PF11287_consen 93 IDDPRRILRYLAERHGFP 110 (112)
T ss_pred eCCHHHHHHHHHHHcCCC
Confidence 236899999999987753
No 232
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=45.43 E-value=64 Score=27.18 Aligned_cols=55 Identities=11% Similarity=0.084 Sum_probs=34.6
Q ss_pred EEEEEeeCCCCCCCccchhh-HHHHHHHHHHcccccCCCCcEEEEEEECcC-ChhhHHHcCC
Q psy8428 69 AIVMFTALAPQRNCHICVSA-SDEYTIVANSFRYSQMYSNKLFFILVDFDE-GSDVFQMLRL 128 (328)
Q Consensus 69 vvV~ftA~~~~~~C~~C~~~-~pef~~vA~s~~~~~~~~~~v~F~~vD~~~-~~~lf~~l~v 128 (328)
++++|+ |..||+.|..- .+.|++..+.+.+.+ -..+.-...|-.+ ..+..+++++
T Consensus 32 vvl~fy---P~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 32 VVIFGV---PGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred EEEEEe---CCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHHHHHHHHHhhCC
Confidence 555454 23499999987 899999988886420 0124444445444 3456777777
No 233
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=44.26 E-value=74 Score=22.32 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=40.1
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC-ChhhHHHcCCCcCceEEEecCCCCCCCCCce
Q psy8428 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE-GSDVFQMLRLNTAPIFMHFPAKGKPKPSDTL 149 (328)
Q Consensus 71 V~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~-~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~ 149 (328)
.+++.+ .|+.|+..+-..+...-. .-...+|..+ .++..+.....++|.+.. ++ .
T Consensus 2 ~ly~~~----~~~~~~~v~~~l~~~gi~----------~~~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~--------~ 57 (73)
T cd03059 2 TLYSGP----DDVYSHRVRIVLAEKGVS----------VEIIDVDPDNPPEDLAELNPYGTVPTLVD--RD--------L 57 (73)
T ss_pred EEEECC----CChhHHHHHHHHHHcCCc----------cEEEEcCCCCCCHHHHhhCCCCCCCEEEE--CC--------E
Confidence 467777 899999876554433222 2223345443 345555566678897642 11 1
Q ss_pred eeeecccCHHHHHHHHHhh
Q psy8428 150 DIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 150 ~~~~~~~~a~~l~~fl~~~ 168 (328)
.-.+...+.+||+++
T Consensus 58 ----~l~es~aI~~yL~~~ 72 (73)
T cd03059 58 ----VLYESRIIMEYLDER 72 (73)
T ss_pred ----EEEcHHHHHHHHHhh
Confidence 124577888888764
No 234
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=42.26 E-value=40 Score=30.01 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=19.6
Q ss_pred EEcCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccc
Q psy8428 249 YIHGSSQGQFVLETYIVILLNAAIVVGMILISEAATR 285 (328)
Q Consensus 249 y~~~g~~~QfgiE~~iv~~~Y~~l~~~~i~L~~~~p~ 285 (328)
+|+++.+.|+|+-+.++..+. .++.+..+.+..+.
T Consensus 102 ~f~~~~~~~~gi~tli~~~i~--~G~~~~~~~~~i~~ 136 (206)
T PF06570_consen 102 FFSPKNSNQYGIITLILVSIV--GGLVFYFIFKYIYP 136 (206)
T ss_pred HHhhcccccccHHHHHHHHHH--HHHHHHHHHHHHhc
Confidence 445555556687777665533 44455555555543
No 235
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=42.20 E-value=27 Score=29.78 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=30.4
Q ss_pred eeeecccCHHHHHHHHHhhcCCcceeeCCCCCchhHHHHH
Q psy8428 150 DIQRVGYSAEAIVKWIADRTDIQIRVFRPPNYSGPMAFIM 189 (328)
Q Consensus 150 ~~~~~~~~a~~l~~fl~~~t~~~i~i~~p~~~~~~~~~~~ 189 (328)
+....|.+..++.+|+-++-|--+.++-|+++...+.++.
T Consensus 72 e~l~eGkS~~qIid~mVaRYG~FVly~Pp~~~~T~lLW~~ 111 (153)
T COG3088 72 ELLQEGKSDQQIIDYMVARYGEFVLYKPPLTGQTLLLWGL 111 (153)
T ss_pred HHHHcCCcHHHHHHHHHHhhcceeeecCCCchhHHHHHHh
Confidence 3334678889999999999998888777778776555554
No 236
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=40.58 E-value=26 Score=28.88 Aligned_cols=89 Identities=19% Similarity=0.317 Sum_probs=44.1
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCCh----hhHHHcCCCcCceEEEecCCCCCCC
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS----DVFQMLRLNTAPIFMHFPAKGKPKP 145 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~----~lf~~l~v~svP~l~~f~p~g~~~~ 145 (328)
+.+|+.+ +|+.|+.... |..+ .++-|-.+|+.+.+ ++.+-++..+.+.--++...+..
T Consensus 2 i~iY~~~----~C~~C~ka~~--------~L~~----~gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~-- 63 (131)
T PRK01655 2 VTLFTSP----SCTSCRKAKA--------WLEE----HDIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKV-- 63 (131)
T ss_pred EEEEeCC----CChHHHHHHH--------HHHH----cCCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHH--
Confidence 4567788 9999998554 3321 34677778887643 23222333323322234333211
Q ss_pred CCceeeeecccCHHHHHHHHHhhcCCcceeeCCC
Q psy8428 146 SDTLDIQRVGYSAEAIVKWIADRTDIQIRVFRPP 179 (328)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fl~~~t~~~i~i~~p~ 179 (328)
..+........+.+++.+.+.++-. =|+||.
T Consensus 64 ~k~l~~~~~~ls~~e~i~ll~~~p~---LikRPI 94 (131)
T PRK01655 64 FQKLNVDVESLSLQDLIKLISDNPG---LLRRPI 94 (131)
T ss_pred HHhCCCCcccCCHHHHHHHHHhCcc---eEeCCE
Confidence 0011111123455667777766533 256664
No 237
>PRK12559 transcriptional regulator Spx; Provisional
Probab=40.19 E-value=26 Score=28.97 Aligned_cols=89 Identities=20% Similarity=0.321 Sum_probs=43.8
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCCh----hhHHHcCCCcCceEEEecCCCCCCC
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS----DVFQMLRLNTAPIFMHFPAKGKPKP 145 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~----~lf~~l~v~svP~l~~f~p~g~~~~ 145 (328)
+.+|+.+ +|+.|+... .|... ..+-|-.+|+.+++ ++-+-++..+.|.--++...+..
T Consensus 2 i~iY~~~----~C~~crkA~--------~~L~~----~gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~-- 63 (131)
T PRK12559 2 VVLYTTA----SCASCRKAK--------AWLEE----NQIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKT-- 63 (131)
T ss_pred EEEEeCC----CChHHHHHH--------HHHHH----cCCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHH--
Confidence 4578888 999999854 34321 34667777776633 33333333333322344433211
Q ss_pred CCceeeeecccCHHHHHHHHHhhcCCcceeeCCC
Q psy8428 146 SDTLDIQRVGYSAEAIVKWIADRTDIQIRVFRPP 179 (328)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fl~~~t~~~i~i~~p~ 179 (328)
-.+.+......+.+++.+.+.++ +-=|+||.
T Consensus 64 ~k~l~~~~~~ls~~e~i~ll~~~---P~LikRPI 94 (131)
T PRK12559 64 FQDLNINIEELSLNEFYKLIIEH---PLMLRRPI 94 (131)
T ss_pred HHhCCCCcccCCHHHHHHHHHhC---cceEeCCE
Confidence 01111111234556666666554 23355654
No 238
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=38.83 E-value=56 Score=23.72 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=39.8
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC----hhhHHHcCCCcCceEEEecCCCCCCCC
Q psy8428 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG----SDVFQMLRLNTAPIFMHFPAKGKPKPS 146 (328)
Q Consensus 71 V~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~----~~lf~~l~v~svP~l~~f~p~g~~~~~ 146 (328)
.+++.+ +|+.|+..+--.++. ++-|-.+|++.. +++.+.-+-..+|++.. .++|
T Consensus 3 ~Ly~~~----~sp~~~kv~~~L~~~------------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~----- 60 (77)
T cd03041 3 ELYEFE----GSPFCRLVREVLTEL------------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTG----- 60 (77)
T ss_pred eEecCC----CCchHHHHHHHHHHc------------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCC-----
Confidence 467777 999999655433322 233444555442 34444445568998753 2221
Q ss_pred CceeeeecccCHHHHHHHHHhh
Q psy8428 147 DTLDIQRVGYSAEAIVKWIADR 168 (328)
Q Consensus 147 ~~~~~~~~~~~a~~l~~fl~~~ 168 (328)
. .-.+...|.+||.++
T Consensus 61 --~----~l~es~~I~~yL~~~ 76 (77)
T cd03041 61 --V----QMFESADIVKYLFKT 76 (77)
T ss_pred --e----EEEcHHHHHHHHHHh
Confidence 1 124678899988765
No 239
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=38.27 E-value=53 Score=22.03 Aligned_cols=51 Identities=12% Similarity=0.179 Sum_probs=30.0
Q ss_pred EEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCCh--hhHHHcCCCcCceEEE
Q psy8428 72 MFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS--DVFQMLRLNTAPIFMH 136 (328)
Q Consensus 72 ~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~--~lf~~l~v~svP~l~~ 136 (328)
+++.+ +|+.|+..+-.++...- +.....+|.++.. ++-+..+-.++|.+..
T Consensus 3 ly~~~----~~~~~~~~~~~l~~~~i----------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFP----GSPRSLRVRLALEEKGL----------PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCC----CCccHHHHHHHHHHcCC----------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 56667 89999977665554422 2233344444322 2455567778997763
No 240
>CHL00036 ycf4 photosystem I assembly protein Ycf4
Probab=38.18 E-value=73 Score=28.12 Aligned_cols=53 Identities=17% Similarity=0.346 Sum_probs=33.9
Q ss_pred chhhHHHH----HHHHHHHHhhhhhhhhhcCCCceeccCCceEEEcCCCccchhhHHHHHHHHHHHHHHHH
Q psy8428 210 NKLMWGVA----AVLFCFAMISGQMWNHIRGPPFIHKNQNGIAYIHGSSQGQFVLETYIVILLNAAIVVGM 276 (328)
Q Consensus 210 ~r~~w~~~----sl~~i~~~isG~mfn~Ir~~P~~~~~~~G~~y~~~g~~~QfgiE~~iv~~~Y~~l~~~~ 276 (328)
|...|+++ ++.+.++.+|-|.=..+ .|+.... .+.|++.| +++..|+++|+.+
T Consensus 20 SNy~wA~i~~~G~~GFll~g~SSYl~~~L--lpf~~~~--~i~FiPQG----------ivM~FYGi~gl~l 76 (184)
T CHL00036 20 SNFFWAFILFLGSLGFLLVGISSYLGKNL--IPFLPSQ--QILFFPQG----------IVMCFYGIAGLFI 76 (184)
T ss_pred hHHHHHHHHHhhhHHHHHhhhHHhhCcCc--cccCChh--hCeEeCcc----------HHHHHHHHHHHHH
Confidence 34467665 66777777776654333 5664422 28888877 5777899887654
No 241
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=37.30 E-value=1.6e+02 Score=31.76 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=37.1
Q ss_pred hhheeccccchhcchh-hHHHHHHHHHHHHhhhhhhhhhcCCCceeccC-Cc-eEEEcCCCccchhhHHHHHHHHHHHHH
Q psy8428 197 FLYVKRNNLEFLYNKL-MWGVAAVLFCFAMISGQMWNHIRGPPFIHKNQ-NG-IAYIHGSSQGQFVLETYIVILLNAAIV 273 (328)
Q Consensus 197 ~~~~~k~~~~~~~~r~-~w~~~sl~~i~~~isG~mfn~Ir~~P~~~~~~-~G-~~y~~~g~~~QfgiE~~iv~~~Y~~l~ 273 (328)
++|.+|.. +||+ ..+++++.++.+.+++..|-. -|+..+. +. +.|=-..+=.=-|++.+++-++.++++
T Consensus 15 ~~~~~k~~----~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~tg~gi~~av~~hl~~~~~g~~~~~y~~p~~~~~~~ 86 (762)
T PRK03776 15 LIYAWKAG----RNTWWFAATLTVLGLFVVLNITLFAS----DYFTGDGINDAVLYTLTNSLTGAGVSKYILPGIGIVLG 86 (762)
T ss_pred HHHHHhcc----cccchHHHHHHHHHHHHHHHHHHHHH----hhccCCCccceEEEEEecCCCCccccceeHHHHHHHHH
Confidence 45556552 3433 334446666667777766643 2332222 33 444322221222455667666666665
Q ss_pred HHHHHh
Q psy8428 274 VGMILI 279 (328)
Q Consensus 274 ~~~i~L 279 (328)
+.+++.
T Consensus 87 ~~~~~~ 92 (762)
T PRK03776 87 LVAVFG 92 (762)
T ss_pred HHHHHH
Confidence 555444
No 242
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=36.04 E-value=1.6e+02 Score=26.36 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=27.1
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHH
Q psy8428 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTI 94 (328)
Q Consensus 48 VI~L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pef~~ 94 (328)
++.++++.-.-. .+.+-.-..++.|... .|++|++..|+.++
T Consensus 67 ~~~~~~~~~~~~-~G~~~~~v~v~~f~d~----~Cp~C~~~~~~l~~ 108 (244)
T COG1651 67 VLYLTPDGKDVV-LGNPYAPVTVVEFFDY----TCPYCKEAFPELKK 108 (244)
T ss_pred eeeecCCCCccc-ccCCCCCceEEEEecC----cCccHHHHHHHHHH
Confidence 566766643333 2333324566777777 99999888887776
No 243
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.74 E-value=71 Score=29.16 Aligned_cols=44 Identities=7% Similarity=0.083 Sum_probs=33.8
Q ss_pred hhhHHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhcCCcc
Q psy8428 120 SDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI 173 (328)
Q Consensus 120 ~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t~~~i 173 (328)
.+..+++||++||++++ .+ .|.. .|..+.+.+.+-|++.++..-
T Consensus 174 ~~~A~e~gI~gVP~fv~--d~-------~~~V-~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 174 EAAAQEMGIRGVPTFVF--DG-------KYAV-SGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHHCCCccCceEEE--cC-------cEee-cCCCCHHHHHHHHHHHHhccc
Confidence 45689999999999998 22 2554 377888999999998887554
No 244
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=35.13 E-value=35 Score=27.15 Aligned_cols=88 Identities=17% Similarity=0.281 Sum_probs=46.9
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCCh----hhHHHcCCCcCceEEEecCCCCCCCC
Q psy8428 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS----DVFQMLRLNTAPIFMHFPAKGKPKPS 146 (328)
Q Consensus 71 V~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~----~lf~~l~v~svP~l~~f~p~g~~~~~ 146 (328)
.+|+.+ +|+.|+....-+++ .++-|-.+|+.+++ ++-+-++..++|.--++...+..-
T Consensus 2 ~iY~~~----~C~~c~ka~~~L~~------------~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~-- 63 (111)
T cd03036 2 KFYEYP----KCSTCRKAKKWLDE------------HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSY-- 63 (111)
T ss_pred EEEECC----CCHHHHHHHHHHHH------------cCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchH--
Confidence 467788 99999986654432 24677788886643 344444455555545554432110
Q ss_pred Cceeee--ecccCHHHHHHHHHhhcCCcceeeCCC
Q psy8428 147 DTLDIQ--RVGYSAEAIVKWIADRTDIQIRVFRPP 179 (328)
Q Consensus 147 ~~~~~~--~~~~~a~~l~~fl~~~t~~~i~i~~p~ 179 (328)
.+.... ....+.+++.+.+.++ +-=++||.
T Consensus 64 ~~l~~~~~~~~~s~~e~~~~l~~~---p~LikRPI 95 (111)
T cd03036 64 RELGLKDKLPSLSEEEALELLSSD---GMLIKRPF 95 (111)
T ss_pred HhCCcccccccCCHHHHHHHHHhC---cCeeeCCE
Confidence 011110 0134556677777655 23355664
No 245
>PRK02542 photosystem I assembly protein Ycf4; Provisional
Probab=34.86 E-value=86 Score=27.74 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=33.0
Q ss_pred hhhHHHH----HHHHHHHHhhhhhhhhhcCCCceeccCCceEEEcCCCccchhhHHHHHHHHHHHHHHHH
Q psy8428 211 KLMWGVA----AVLFCFAMISGQMWNHIRGPPFIHKNQNGIAYIHGSSQGQFVLETYIVILLNAAIVVGM 276 (328)
Q Consensus 211 r~~w~~~----sl~~i~~~isG~mfn~Ir~~P~~~~~~~G~~y~~~g~~~QfgiE~~iv~~~Y~~l~~~~ 276 (328)
...|+++ ++.+.++.+|-|.=..+ .|+.... .+.|++.| +++..|+++|+.+
T Consensus 25 Ny~wA~i~~~G~~GFll~g~sSYl~~~L--lpf~~~~--~i~FiPQG----------ivM~FYGi~gl~l 80 (188)
T PRK02542 25 NYLWASMVTIGGIGFLLAGLSSYLGRNL--LPVGDPS--TLIFIPQG----------LAMGFYGVAGTLL 80 (188)
T ss_pred HHHHHHHHHhhhHHHHHhhhHHhhCcCc--cccCChh--hCeEeCcc----------HHHHHHHHHHHHH
Confidence 4467665 66777777776654222 5664422 27888877 5677899887653
No 246
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=33.16 E-value=51 Score=29.56 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=21.2
Q ss_pred EEEEEeeCCCCCCCccchhhHHHHHHHHHHc
Q psy8428 69 AIVMFTALAPQRNCHICVSASDEYTIVANSF 99 (328)
Q Consensus 69 vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~ 99 (328)
+|=+||+. +|..|-..+.-+.++++..
T Consensus 1 vVELFTSQ----GCsSCPpAD~~L~~l~~~~ 27 (202)
T PF06764_consen 1 VVELFTSQ----GCSSCPPADRLLSELAARP 27 (202)
T ss_dssp EEEEEE-T----T-TT-HHHHHHHHHHHHHT
T ss_pred CeeEecCC----CCCCCcHHHHHHHHhhcCC
Confidence 45689999 9999999999999999874
No 247
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=32.86 E-value=40 Score=27.89 Aligned_cols=34 Identities=18% Similarity=0.414 Sum_probs=23.3
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG 119 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~ 119 (328)
+.+|+.+ +|+.|+... .|..+ ..+-|-.+|+.+.
T Consensus 2 i~iY~~~----~C~~crkA~--------~~L~~----~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTIS----SCTSCKKAK--------TWLNA----HQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCC----CCHHHHHHH--------HHHHH----cCCCeEEEECCCC
Confidence 4567788 999999844 45432 3577888888753
No 248
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=32.80 E-value=58 Score=26.04 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=23.9
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCCh
Q psy8428 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS 120 (328)
Q Consensus 71 V~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~ 120 (328)
.+|+.+ +|+.|+....-+++ .++-|-.+|+.+.+
T Consensus 2 ~iY~~~----~C~~c~ka~~~L~~------------~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSP----NCTTCKKARRWLEA------------NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCC----CCHHHHHHHHHHHH------------cCCceEEEecCCCh
Confidence 357788 99999987654443 24677788887754
No 249
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=32.57 E-value=1.9e+02 Score=20.68 Aligned_cols=71 Identities=11% Similarity=0.174 Sum_probs=45.9
Q ss_pred EEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCC-hhhHHHcCCCcCceEEEecCCCCCCCCCcee
Q psy8428 72 MFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG-SDVFQMLRLNTAPIFMHFPAKGKPKPSDTLD 150 (328)
Q Consensus 72 ~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~-~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~ 150 (328)
++..+ +|+.|+..+=..+... -+..+..+|..+. +++.+.-.-..+|++. .+| .
T Consensus 1 Ly~~~----~Sp~~~kv~~~l~~~~----------i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g------~--- 55 (75)
T PF13417_consen 1 LYGFP----GSPYSQKVRLALEEKG----------IPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDG------E--- 55 (75)
T ss_dssp EEEET----TSHHHHHHHHHHHHHT----------EEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETT------E---
T ss_pred CCCcC----CChHHHHHHHHHHHcC----------CeEEEeccCcccchhHHHhhcccccceEEE--ECC------E---
Confidence 35667 8999997655443221 1344556666553 5666777778899997 434 1
Q ss_pred eeecccCHHHHHHHHHhhcC
Q psy8428 151 IQRVGYSAEAIVKWIADRTD 170 (328)
Q Consensus 151 ~~~~~~~a~~l~~fl~~~t~ 170 (328)
.-.+...|++||.++-+
T Consensus 56 ---~l~dS~~I~~yL~~~~~ 72 (75)
T PF13417_consen 56 ---VLTDSAAIIEYLEERYP 72 (75)
T ss_dssp ---EEESHHHHHHHHHHHST
T ss_pred ---EEeCHHHHHHHHHHHcC
Confidence 12467889999988755
No 250
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=32.00 E-value=96 Score=25.72 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=21.3
Q ss_pred ecccCHHHHHHHHHhhcCCcceeeCCCC
Q psy8428 153 RVGYSAEAIVKWIADRTDIQIRVFRPPN 180 (328)
Q Consensus 153 ~~~~~a~~l~~fl~~~t~~~i~i~~p~~ 180 (328)
..|.+.+++.+|+.++-|-.+-+.-|.+
T Consensus 71 ~~G~Sd~eI~~~~v~RYG~~Vly~Pp~~ 98 (126)
T TIGR03147 71 NEGKSNQQIIDFMTARFGDFVLYNPPFK 98 (126)
T ss_pred HcCCCHHHHHHHHHHhcCCeEEecCCCC
Confidence 3578899999999999998775443334
No 251
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.24 E-value=84 Score=33.27 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=53.8
Q ss_pred eChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHH-H--HHHHHHcccccCCCCcEEEEEEECcCChhhHHHcC
Q psy8428 51 FDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDE-Y--TIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (328)
Q Consensus 51 L~~~nf~~~v~~~~r~y~vvV~ftA~~~~~~C~~C~~~~pe-f--~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~ 127 (328)
=.++-|++-- .+|.++++-.-.+ ||+-|+-|..| | +++|+-.. ...+=+|||-++-|++=+.|.
T Consensus 31 W~~eAf~~A~---~edkPIflSIGys----~CHWChVM~~ESf~d~eiA~~lN------~~FV~IKVDREERPDvD~~Ym 97 (667)
T COG1331 31 WGEEAFAKAK---EEDKPILLSIGYS----TCHWCHVMAHESFEDPEIAAILN------ENFVPVKVDREERPDVDSLYM 97 (667)
T ss_pred cCHHHHHHHH---HhCCCEEEEeccc----cccchHHHhhhcCCCHHHHHHHH------hCceeeeEChhhccCHHHHHH
Confidence 4566776653 3567899989898 99999988764 1 34454443 457889999999776655444
Q ss_pred --------CCcCceEEEecCCCCC
Q psy8428 128 --------LNTAPIFMHFPAKGKP 143 (328)
Q Consensus 128 --------v~svP~l~~f~p~g~~ 143 (328)
=-+=|--++.-|.++|
T Consensus 98 ~~~q~~tG~GGWPLtVfLTPd~kP 121 (667)
T COG1331 98 NASQAITGQGGWPLTVFLTPDGKP 121 (667)
T ss_pred HHHHHhccCCCCceeEEECCCCce
Confidence 3357877766665443
No 252
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=30.22 E-value=1.1e+02 Score=21.18 Aligned_cols=52 Identities=8% Similarity=0.039 Sum_probs=31.6
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcC----ChhhHHHcCCCcCceEEE
Q psy8428 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE----GSDVFQMLRLNTAPIFMH 136 (328)
Q Consensus 71 V~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~----~~~lf~~l~v~svP~l~~ 136 (328)
.+|+.+ +|+.|+..+-..+...- +.-...+|..+ .++..+.-....+|++..
T Consensus 2 ~Ly~~~----~s~~~~~~~~~L~~~~l----------~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSP----TAPNPRRVRIFLAEKGI----------DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCC----CCcchHHHHHHHHHcCC----------CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 357777 89999987765543322 12234455432 345555566678999864
No 253
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=29.97 E-value=35 Score=26.05 Aligned_cols=50 Identities=10% Similarity=0.181 Sum_probs=39.1
Q ss_pred chhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEEEecC
Q psy8428 85 CVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPA 139 (328)
Q Consensus 85 C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p 139 (328)
.+......+.+.+.+. .++.-.-.+|+.++|++++..+|-..||++--.|
T Consensus 11 s~~a~~~l~~l~~~~l-----~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik~~P 60 (82)
T PF07689_consen 11 SERAIENLRRLCEEYL-----GGRYELEVIDVLEQPELAEEDRIVATPTLIKESP 60 (82)
T ss_dssp HHHHHHHHHHHHHCHC-----TTTEEEEEEETTTSHSHHTTTEEECHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhhC-----CCcEEEEEEEcccCHhHHhHCCeeecceEeeccC
Confidence 4555666666666543 3679999999999999999999999999875444
No 254
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=29.37 E-value=68 Score=26.87 Aligned_cols=33 Identities=21% Similarity=0.518 Sum_probs=21.8
Q ss_pred HcCCCCccEEEEEeeCCCC-CCCccchhhHHHHH
Q psy8428 61 KNGPRNYSAIVMFTALAPQ-RNCHICVSASDEYT 93 (328)
Q Consensus 61 ~~~~r~y~vvV~ftA~~~~-~~C~~C~~~~pef~ 93 (328)
.++.|+...++.++.+++- -=|+.||++.-||-
T Consensus 66 s~G~~~~~~v~v~~~~~~~~sPCG~CRQ~i~Ef~ 99 (134)
T COG0295 66 SEGKRKFDAVVVVADTGKPVSPCGACRQVLAEFC 99 (134)
T ss_pred HcCCCcEEEEEEEcCCCCCcCCcHHHHHHHHHhc
Confidence 3577777777766654332 34999998877654
No 255
>PLN02250 lipid phosphate phosphatase
Probab=27.65 E-value=3e+02 Score=26.44 Aligned_cols=25 Identities=16% Similarity=-0.033 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhhhhhhhcCCCce
Q psy8428 216 VAAVLFCFAMISGQMWNHIRGPPFI 240 (328)
Q Consensus 216 ~~sl~~i~~~isG~mfn~Ir~~P~~ 240 (328)
..++++..+.+...+...=|--|.+
T Consensus 104 l~sv~~t~lit~~lK~~vGRpRPdf 128 (314)
T PLN02250 104 LFSVLITGVITDAIKDAVGRPRPDF 128 (314)
T ss_pred HHHHHHHHHHHHHHHhhhCCCCCCh
Confidence 3355555666666666666655644
No 256
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=26.92 E-value=61 Score=25.01 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=19.6
Q ss_pred hhhHHHcCCCcCceEEEecCCCC
Q psy8428 120 SDVFQMLRLNTAPIFMHFPAKGK 142 (328)
Q Consensus 120 ~~lf~~l~v~svP~l~~f~p~g~ 142 (328)
.++.++|+++++|+.+++.+.|+
T Consensus 85 ~~~~~~~~~~~~P~~~vid~~G~ 107 (114)
T cd02967 85 AELGMAYQVSKLPYAVLLDEAGV 107 (114)
T ss_pred HHHHhhcCCCCcCeEEEECCCCe
Confidence 45889999999999999987653
No 257
>COG4713 Predicted membrane protein [Function unknown]
Probab=26.84 E-value=52 Score=32.38 Aligned_cols=65 Identities=23% Similarity=0.357 Sum_probs=45.6
Q ss_pred hhhhhhcCC-Ccee---ccCCc-eEEEcCCCccchhhHHH--HHHHHHHHHHHHHHHhhhccccccCcccch
Q psy8428 229 QMWNHIRGP-PFIH---KNQNG-IAYIHGSSQGQFVLETY--IVILLNAAIVVGMILISEAATRKNDVRVRR 293 (328)
Q Consensus 229 ~mfn~Ir~~-P~~~---~~~~G-~~y~~~g~~~QfgiE~~--iv~~~Y~~l~~~~i~L~~~~p~~~~~~~~~ 293 (328)
+|=+.+.+| ||.+ ||-.| ++.++++.-+|||.-+. +-..+|..+++.+|+.+....-+-+..+++
T Consensus 328 qi~~~l~hPi~yv~i~iR~~h~~~s~~~~sni~qfg~l~~~~~~l~l~~i~~f~fVlIt~~~ki~i~k~~k~ 399 (489)
T COG4713 328 QISYFLKHPIPYVRIFIRDVHGSFSGFSGSNISQFGQLTSSFITLILPVIFTFLFVLITIRIKIKIDKTTKI 399 (489)
T ss_pred HHHHHHhCCcceEEeeeeecceeEeeeeccchhhheeeccccccccHHHHHHHHHHHHHHHHhheeeccceE
Confidence 444444444 6665 56578 99999999999997543 446788899999998888765554544444
No 258
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=25.63 E-value=3.9e+02 Score=24.87 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhcCCCceeccCC-c-eEEEcCCCccchhhHHHHHHHHHHHHHHHHHHh
Q psy8428 212 LMWGVAAVLFCFAMISGQMWNHIRGPPFIHKNQN-G-IAYIHGSSQGQFVLETYIVILLNAAIVVGMILI 279 (328)
Q Consensus 212 ~~w~~~sl~~i~~~isG~mfn~Ir~~P~~~~~~~-G-~~y~~~g~~~QfgiE~~iv~~~Y~~l~~~~i~L 279 (328)
..+....+.+.....+|+.+|.+-....-..|+. + --.-+|.-. .-|....+..-.++++++.++
T Consensus 47 ~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS---~~~a~~~~~~~~~~~~~~a~~ 113 (289)
T COG0382 47 KLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVS---VKEALLLAILLLLLGLALALL 113 (289)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHH
Confidence 4555667788899999999999998888777763 3 222333322 223444444444444444433
No 259
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=25.50 E-value=1.4e+02 Score=24.68 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=21.4
Q ss_pred ecccCHHHHHHHHHhhcCCcceeeCCCC
Q psy8428 153 RVGYSAEAIVKWIADRTDIQIRVFRPPN 180 (328)
Q Consensus 153 ~~~~~a~~l~~fl~~~t~~~i~i~~p~~ 180 (328)
..|.+.+++.+|+.++-|-.+-+.-|.+
T Consensus 71 ~~G~sd~eI~~~~v~RYG~~Vl~~Pp~~ 98 (126)
T PRK10144 71 AEGKSEVEIIGWMTERYGDFVRYNPPLT 98 (126)
T ss_pred HcCCCHHHHHHHHHHhcCCeEEecCCCC
Confidence 3578899999999999998775443434
No 260
>KOG1364|consensus
Probab=24.88 E-value=1.2e+02 Score=29.61 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=39.6
Q ss_pred cEEEEEEECcCChhhHHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhc
Q psy8428 108 KLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (328)
Q Consensus 108 ~v~F~~vD~~~~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t 169 (328)
....+..|..+.+++-+.|.+.+.|++.++.|-. ++++....+..++++|.+=+++.+
T Consensus 132 ~wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~T----ge~v~~ws~vi~~~~fl~~l~~Fi 189 (356)
T KOG1364|consen 132 RWLLVLDDTSEGQPFSAFYHISSLPHIAIIDPIT----GERVKRWSGVIEPEQFLSDLNEFI 189 (356)
T ss_pred eEEEEeeccCCCCchhhheeccCCceEEEECCch----hhhhhhhccccCHHHHHHHHHHHH
Confidence 4555566777789999999999999999998861 233444445455665555555443
No 261
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=24.60 E-value=52 Score=26.01 Aligned_cols=41 Identities=10% Similarity=0.242 Sum_probs=26.7
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCCh-------hhHHHcC
Q psy8428 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS-------DVFQMLR 127 (328)
Q Consensus 71 V~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~-------~lf~~l~ 127 (328)
.+|+.+ +|..|+.....++ + .++-|-.+|+.+.| ++.+++|
T Consensus 2 ~iy~~~----~C~~crka~~~L~--------~----~~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 2 TLYGIK----NCDTVKKARKWLE--------A----RGVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred EEEeCC----CCHHHHHHHHHHH--------H----cCCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 467888 9999998554333 1 24667777877643 5556655
No 262
>COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]
Probab=24.41 E-value=4e+02 Score=21.92 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCceeccCCceEEEcCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccc
Q psy8428 214 WGVAAVLFCFAMISGQMWNHIRGPPFIHKNQNGIAYIHGSSQGQFVLETYIVILLNAAIVVGMILISEAATR 285 (328)
Q Consensus 214 w~~~sl~~i~~~isG~mfn~Ir~~P~~~~~~~G~~y~~~g~~~QfgiE~~iv~~~Y~~l~~~~i~L~~~~p~ 285 (328)
+..+.+....-.+++...|..+..||-..++ =.|+.+.||-++-+.++.++.+.=.-+++|--++-.
T Consensus 20 ~~~~~~l~l~~lL~p~~~~~~K~~~YE~G~~-----p~g~a~~~f~~qyyl~ailFvvFDie~~fl~pwav~ 86 (123)
T COG0838 20 LLGVLMLFLSKLLGPRRPNPEKLSPYECGNP-----PFGGARLRFSVQYYLVAILFVVFDVEVVFLFPWAVS 86 (123)
T ss_pred HHHHHHHHHHHHhCCCCCCccccCccccCCC-----CCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666678888899999999954443 124556678888899999999998887777776633
No 263
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=24.39 E-value=95 Score=26.37 Aligned_cols=41 Identities=10% Similarity=0.038 Sum_probs=0.0
Q ss_pred CcCChhhHHHcCCCcCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHH
Q psy8428 116 FDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIA 166 (328)
Q Consensus 116 ~~~~~~lf~~l~v~svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~ 166 (328)
+.++.+.+.++|+.++|++++ .| + ....|....+.+.+.|+
T Consensus 153 ~~~~~~~a~~~gv~GvP~~vv--~g------~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 153 LEEDTAEARQLGVFGVPTFVV--NG------K--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHHHHHTTCSSSSEEEE--TT------T--EEEESCSSHHHHHHHH-
T ss_pred HHHHHHHHHHcCCcccCEEEE--CC------E--EEEECCCCHHHHHHHhC
No 264
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=24.24 E-value=1e+02 Score=21.69 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=26.9
Q ss_pred EEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCChhhHHHcCCCcCceEE
Q psy8428 72 MFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFM 135 (328)
Q Consensus 72 ~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~l~v~svP~l~ 135 (328)
+++.. +|+.|+..+-......- +.-...+|.++.....+..+-..+|.+.
T Consensus 3 Ly~~~----~~p~~~rvr~~L~~~gl----------~~~~~~~~~~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 3 LYIYE----HCPFCVKARMIAGLKNI----------PVEQIILQNDDEATPIRMIGAKQVPILE 52 (71)
T ss_pred eEecC----CCcHhHHHHHHHHHcCC----------CeEEEECCCCchHHHHHhcCCCccCEEE
Confidence 45566 89999976654443221 1222234433333334455566788874
No 265
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=23.20 E-value=1.2e+02 Score=26.11 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=20.5
Q ss_pred EEeeCCCCCCCccchhhHHHHHHHHHHcc
Q psy8428 72 MFTALAPQRNCHICVSASDEYTIVANSFR 100 (328)
Q Consensus 72 ~ftA~~~~~~C~~C~~~~pef~~vA~s~~ 100 (328)
+|+-| .|+.|-.++|++.++...+.
T Consensus 2 ~F~dP----lc~~C~~~E~~l~kl~~~~~ 26 (176)
T PF13743_consen 2 LFVDP----LCSWCWGFEPELRKLKEEYG 26 (176)
T ss_dssp EEE-T----T-HHHHHHHHHHHHHHHHS-
T ss_pred eeeCC----CChHHHHhHHHHHHHHHHcC
Confidence 57888 99999999999999999986
No 266
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=22.79 E-value=3e+02 Score=25.22 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=26.4
Q ss_pred eeccccchhcchhhHHHHHHHHHHHHhhhhhhhhhcCCCceeccCCc--eEEEcCCC
Q psy8428 200 VKRNNLEFLYNKLMWGVAAVLFCFAMISGQMWNHIRGPPFIHKNQNG--IAYIHGSS 254 (328)
Q Consensus 200 ~~k~~~~~~~~r~~w~~~sl~~i~~~isG~mfn~Ir~~P~~~~~~~G--~~y~~~g~ 254 (328)
+.|+.+..+.|+-+-+.+.++.++. +-++||-.++.+| +.++-|..
T Consensus 24 l~~r~~~~~l~PlLv~~~~li~~L~---------~~~i~Y~~Y~~g~~~i~~lLgPA 71 (230)
T COG1346 24 LYKRTKSPFLNPLLVATVLLIAFLL---------LFGISYEDYMKGGQWINFLLGPA 71 (230)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHH---------HcCCCHHHHhcccHHHHHHHHHH
Confidence 3344444555666655555444333 3367888877766 67776654
No 267
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=22.55 E-value=88 Score=28.84 Aligned_cols=89 Identities=15% Similarity=0.062 Sum_probs=52.6
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHc-------ccccCC--CCcEEEEEEECcC-ChhhHHHcCCCcCceEE
Q psy8428 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSF-------RYSQMY--SNKLFFILVDFDE-GSDVFQMLRLNTAPIFM 135 (328)
Q Consensus 66 ~y~vvV~ftA~~~~~~C~~C~~~~pef~~vA~s~-------~~~~~~--~~~v~F~~vD~~~-~~~lf~~l~v~svP~l~ 135 (328)
+-.|+-+||+. +|..|-.....+.++|+.= .-++=+ .=+=-|++-++++ .....+.++-++++|==
T Consensus 41 ~~~VVELfTSQ----GCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQ 116 (261)
T COG5429 41 PLGVVELFTSQ----GCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQ 116 (261)
T ss_pred CceEEEEeecC----CcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCch
Confidence 34577899999 9999999999998888531 000000 0011244444444 34566778888877755
Q ss_pred EecCCCCCCCCCceeeeecccCHHHHHHHHHh
Q psy8428 136 HFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (328)
Q Consensus 136 ~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~ 167 (328)
.+-+|.. + ..+.+..++.+-|+.
T Consensus 117 avvnGr~-------~--~~Gad~~~i~~~i~a 139 (261)
T COG5429 117 AVVNGRV-------H--ANGADPGAIEDAIAA 139 (261)
T ss_pred heeechh-------h--hcCCCHHHHHHHHHH
Confidence 5554411 1 245666666666653
No 268
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=22.53 E-value=94 Score=18.53 Aligned_cols=20 Identities=20% Similarity=0.291 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHhhhhh
Q psy8428 211 KLMWGVAAVLFCFAMISGQM 230 (328)
Q Consensus 211 r~~w~~~sl~~i~~~isG~m 230 (328)
|++..+.++..+++.+||..
T Consensus 6 ~w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 6 KWFGDIFALFMLVFAITGLI 25 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556668888999999863
No 269
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=22.52 E-value=1.2e+02 Score=24.17 Aligned_cols=89 Identities=17% Similarity=0.268 Sum_probs=43.7
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHcccccCCCCcEEEEEEECcCCh----hhHHHcCCCcCceEEEecCCCCCCC
Q psy8428 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS----DVFQMLRLNTAPIFMHFPAKGKPKP 145 (328)
Q Consensus 70 vV~ftA~~~~~~C~~C~~~~pef~~vA~s~~~~~~~~~~v~F~~vD~~~~~----~lf~~l~v~svP~l~~f~p~g~~~~ 145 (328)
+.+|+.+ +|+.|+.....++. .++-|-.+|+.+++ ++.+-++..+.|.--++...+..
T Consensus 2 i~iY~~~----~C~~c~ka~~~L~~------------~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~-- 63 (115)
T cd03032 2 IKLYTSP----SCSSCRKAKQWLEE------------HQIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKA-- 63 (115)
T ss_pred EEEEeCC----CCHHHHHHHHHHHH------------CCCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHH--
Confidence 3467778 99999986665443 23566677776532 33333333333322334433211
Q ss_pred CCceeeeecccCHHHHHHHHHhhcCCcceeeCCC
Q psy8428 146 SDTLDIQRVGYSAEAIVKWIADRTDIQIRVFRPP 179 (328)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fl~~~t~~~i~i~~p~ 179 (328)
..+........+.++..+.+.++-. =|+||.
T Consensus 64 ~k~l~~~~~~ls~~e~i~~l~~~p~---LikRPi 94 (115)
T cd03032 64 FKNLNIDIDELSLSELIRLISEHPS---LLRRPI 94 (115)
T ss_pred HHHcCCCcccCCHHHHHHHHHhChh---heeCCE
Confidence 0011111123455667777765532 255664
No 270
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=22.34 E-value=1e+02 Score=26.80 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=17.9
Q ss_pred HHHHhhhhCCCeEEeChhhHHHHH
Q psy8428 37 LHLSEMNAKKAVLRFDGQKYKEYI 60 (328)
Q Consensus 37 ~~L~~l~~~~~VI~L~~~nf~~~v 60 (328)
+++.+.-.+++.|.+||+||-+.+
T Consensus 146 ~~~~~~~~~~~~I~v~denf~~~m 169 (182)
T PF09323_consen 146 SKLKKKYKKQKTIVVTDENFLEWM 169 (182)
T ss_pred HHHHHHhccCCcEEEcchhHHHHH
Confidence 445554456789999999998876
No 271
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=21.58 E-value=1.5e+02 Score=25.89 Aligned_cols=16 Identities=0% Similarity=0.283 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHH
Q psy8428 296 AVVGLGLVAFFFSVIL 311 (328)
Q Consensus 296 ~~~~~~~i~~~fs~l~ 311 (328)
.++...++|++|..+.
T Consensus 133 TiiT~~CiyiLyGlFI 148 (173)
T PF11085_consen 133 TIITTLCIYILYGLFI 148 (173)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5666778888887764
No 272
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=21.15 E-value=1.3e+02 Score=22.65 Aligned_cols=36 Identities=8% Similarity=0.355 Sum_probs=21.6
Q ss_pred cCceEEEecCCCCCCCCCceeeeecccCHHHHHHHHHhhc
Q psy8428 130 TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (328)
Q Consensus 130 svP~l~~f~p~g~~~~~~~~~~~~~~~~a~~l~~fl~~~t 169 (328)
+-|++.++...|+.. ++++ ....+.+++.+||+++.
T Consensus 41 ~~P~L~l~d~~g~~~--E~i~--i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEV--ERIN--IEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--S--EEEE---SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEE--EEEE--cccCCHHHHHHHHHHhC
Confidence 458888888665432 3343 36789999999998873
No 273
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=20.82 E-value=81 Score=27.27 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=17.0
Q ss_pred CChhhHHHcCCCcCceEEEecC
Q psy8428 118 EGSDVFQMLRLNTAPIFMHFPA 139 (328)
Q Consensus 118 ~~~~lf~~l~v~svP~l~~f~p 139 (328)
+..++++++||++.||+++|..
T Consensus 135 ~D~~la~~m~I~~~Ptlvi~~~ 156 (176)
T PF13743_consen 135 EDQQLAREMGITGFPTLVIFNE 156 (176)
T ss_dssp HHHHHHHHTT-SSSSEEEEE--
T ss_pred HHHHHHHHcCCCCCCEEEEEec
Confidence 3568899999999999999984
No 274
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=20.31 E-value=35 Score=21.98 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=5.1
Q ss_pred CCCCCccchhhH
Q psy8428 78 PQRNCHICVSAS 89 (328)
Q Consensus 78 ~~~~C~~C~~~~ 89 (328)
|++||..|+..-
T Consensus 2 ~ryyCdyC~~~~ 13 (38)
T PF06220_consen 2 PRYYCDYCKKYL 13 (38)
T ss_dssp -S-B-TTT--B-
T ss_pred cCeeccccccee
Confidence 678999998654
No 275
>PF10810 DUF2545: Protein of unknown function (DUF2545) ; InterPro: IPR024470 This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. Their sequences are highly conserved.
Probab=20.16 E-value=80 Score=23.43 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhh
Q psy8428 212 LMWGVAAVLFCFAMISGQMWNHI 234 (328)
Q Consensus 212 ~~w~~~sl~~i~~~isG~mfn~I 234 (328)
.+|.++++. ++++|||....+
T Consensus 3 YlW~FL~ls--IlcVSgYigQVl 23 (80)
T PF10810_consen 3 YLWTFLALS--ILCVSGYIGQVL 23 (80)
T ss_pred hhHHHHHHH--HHHhhhHHHHHH
Confidence 478888766 788999876554
No 276
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.11 E-value=1.2e+02 Score=24.80 Aligned_cols=19 Identities=16% Similarity=-0.008 Sum_probs=7.7
Q ss_pred HHHHHHHHhhhhhhhhhcC
Q psy8428 218 AVLFCFAMISGQMWNHIRG 236 (328)
Q Consensus 218 sl~~i~~~isG~mfn~Ir~ 236 (328)
-++++++++.++.+|+-|.
T Consensus 9 i~~i~l~~~~~~~~~rRR~ 27 (130)
T PF12273_consen 9 IVAILLFLFLFYCHNRRRR 27 (130)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444433
No 277
>PRK07668 hypothetical protein; Validated
Probab=20.06 E-value=4.1e+02 Score=24.72 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhcCCCceeccC
Q psy8428 211 KLMWGVAAVLFCFAMISGQMWNHIRGPPFIHKNQ 244 (328)
Q Consensus 211 r~~w~~~sl~~i~~~isG~mfn~Ir~~P~~~~~~ 244 (328)
+-+|....+.-..+++....+++..+.|.+.-++
T Consensus 142 ~i~~~~~~~~p~~l~i~i~~l~k~yp~~~~~ls~ 175 (254)
T PRK07668 142 FLIIYLVILIPMLLIVAIMFLNKWYGTPMLQFTQ 175 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCceEEEecc
Confidence 4466666777778899999999999998876553
Done!