RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8428
         (328 letters)



>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 234

 Score = 29.3 bits (65), Expect = 0.55
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 187 FIMLFAIVAVFLYVKRNNLEFLYNKLMWG--VAAVLFCFAMISGQMWN 232
              +F  +   L      L  L   L +G  +A ++     ISG   N
Sbjct: 16  LFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVN 63


>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose
           epimerase/reductase (GDP-fucose synthetase) {Escherichia
           coli [TaxId: 562]}
          Length = 315

 Score = 27.9 bits (61), Expect = 1.5
 Identities = 16/143 (11%), Positives = 35/143 (24%), Gaps = 6/143 (4%)

Query: 156 YSAEAIVKWIADRTDIQIRVFRPPNYSGP---MAFIMLFAIVAVFLYVKRNNLEFLYNKL 212
            +   + +    +     R   P N  GP           I A+         +   + +
Sbjct: 140 IAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVV 199

Query: 213 MWGVAAVLFCFAMISGQMWNHIRGPPFIHKNQNGIAYIHGSSQGQFVLETYIVILLNAAI 272
           +WG    +  F  +       I      H+          S           +  L   I
Sbjct: 200 VWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTI 259

Query: 273 VVGM---ILISEAATRKNDVRVR 292
              +     +   A++ +    +
Sbjct: 260 AKVVGYKGRVVFDASKPDGTPRK 282


>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
           {Streptococcus suis, serotype 2 [TaxId: 1307]}
          Length = 346

 Score = 27.3 bits (59), Expect = 3.1
 Identities = 13/137 (9%), Positives = 29/137 (21%), Gaps = 11/137 (8%)

Query: 156 YSAEAIVKWIADRTDIQIRVFRPPNYSGPMAFIMLFAIVAVFLYVKRNNLEFLYNKLMWG 215
            +++ IVK       ++  +    N  GP   I  F    +   +     +         
Sbjct: 164 AASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNV- 222

Query: 216 VAAVLFCFAMISGQMWNHIRGPPFIHKNQNGIAYIHGSSQGQFVLETYIVILLNAAIVVG 275
                  +   +                +  +    G    + VLE  +  +        
Sbjct: 223 -----RDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQ-----P 272

Query: 276 MILISEAATRKNDVRVR 292
                    R       
Sbjct: 273 KDAYDHVTDRAGHDLRY 289


>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
           {Streptomyces venezuelae [TaxId: 54571]}
          Length = 322

 Score = 25.5 bits (55), Expect = 9.7
 Identities = 5/29 (17%), Positives = 12/29 (41%)

Query: 156 YSAEAIVKWIADRTDIQIRVFRPPNYSGP 184
             ++ + +       + +R+ R  N  GP
Sbjct: 156 AGSDLVARAYHRTYGLDVRITRCCNNYGP 184


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,193,677
Number of extensions: 53006
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 16
Length of query: 328
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,226,816
Effective search space: 296889472
Effective search space used: 296889472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.7 bits)