BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8429
         (314 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LKT|A Chain A, Solution Structure Of N-Terminal Domain Of Human Tig3 In 2
           M Urea
          Length = 125

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 142 KPKPSDTLDIQRVGYSAEAIVKWIADRTDIQIRVFRPPNYSGPMAFIMLFAIVAVFLYVK 201
           +PKP D ++I R+GY   A+  +I D   I +    PP+         +F++++    VK
Sbjct: 7   EPKPGDLIEIFRLGYEHWAL--YIGDGYVIHL---APPSEYPGAGSSSVFSVLSNSAEVK 61

Query: 202 RNNLE 206
           R  LE
Sbjct: 62  RERLE 66


>pdb|3G7Y|A Chain A, Crystal Structure Of Oxidized Ost6l
 pdb|3G9B|A Chain A, Crystal Structure Of Reduced Ost6l
 pdb|3GA4|A Chain A, Crystal Structure Of Ost6l (Photoreduced Form)
          Length = 178

 Score = 27.7 bits (60), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 82  CHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKG 141
           C +C      Y  VA+  R     S  LFF  VD +E   + + L+L   P  + +P   
Sbjct: 56  CQLCHDFEKTYHAVADVIRSQAPQSLNLFFT-VDVNEVPQLVKDLKLQNVPHLVVYPPAE 114

Query: 142 KPKPS 146
             K S
Sbjct: 115 SNKQS 119


>pdb|3UIJ|A Chain A, Crystal Structure Of Human Survivin K62yH80W MUTANT IN
           COMPLEX WITH SmacDIABLO(1-15) Peptide
 pdb|3UIJ|B Chain B, Crystal Structure Of Human Survivin K62yH80W MUTANT IN
           COMPLEX WITH SmacDIABLO(1-15) Peptide
 pdb|3UIK|A Chain A, Crystal Structure Of Human Survivin Mutant K62yH80W IN
           COMPLEX WITH H3(1-10) Peptide
 pdb|3UIK|B Chain B, Crystal Structure Of Human Survivin Mutant K62yH80W IN
           COMPLEX WITH H3(1-10) Peptide
          Length = 143

 Score = 27.7 bits (60), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 18  CSHAQVKKQSTSLSLGDRVLHLSEMNAKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTAL 76
           C+   VKKQ   L+LG+  L L    AK  + +    K KE+ +   +   AI    A+
Sbjct: 85  CAFLSVKKQFEELTLGE-FLKLDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAM 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.140    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,225,190
Number of Sequences: 62578
Number of extensions: 319620
Number of successful extensions: 773
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 11
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)