Query psy8429
Match_columns 314
No_of_seqs 200 out of 1447
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 18:37:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2603|consensus 100.0 1.3E-67 2.8E-72 479.3 25.7 283 32-314 26-316 (331)
2 PF04756 OST3_OST6: OST3 / OST 100.0 2.8E-34 6E-39 246.1 -0.1 150 160-309 1-157 (160)
3 cd03006 PDI_a_EFP1_N PDIa fami 99.8 1.9E-19 4E-24 145.6 11.2 106 44-165 7-113 (113)
4 cd02996 PDI_a_ERp44 PDIa famil 99.8 2.6E-18 5.7E-23 137.0 11.4 108 46-165 1-108 (108)
5 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 2.4E-18 5.2E-23 136.0 10.8 103 46-165 1-104 (104)
6 cd03065 PDI_b_Calsequestrin_N 99.8 3.3E-18 7.1E-23 139.6 11.1 108 45-169 8-119 (120)
7 PF00085 Thioredoxin: Thioredo 99.8 5.1E-18 1.1E-22 132.7 11.7 103 48-168 1-103 (103)
8 KOG0910|consensus 99.8 2.6E-18 5.7E-23 143.2 10.4 105 48-170 45-149 (150)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 4.8E-18 1E-22 133.8 11.2 100 46-164 1-100 (101)
10 PTZ00443 Thioredoxin domain-co 99.8 5.3E-17 1.1E-21 146.1 18.1 113 45-173 29-143 (224)
11 cd03002 PDI_a_MPD1_like PDI fa 99.7 1.6E-17 3.5E-22 132.0 11.1 107 47-166 1-109 (109)
12 COG3118 Thioredoxin domain-con 99.7 1.1E-17 2.4E-22 153.2 11.1 110 46-171 23-132 (304)
13 cd02994 PDI_a_TMX PDIa family, 99.7 3.4E-17 7.3E-22 128.7 11.1 101 46-167 1-101 (101)
14 cd03005 PDI_a_ERp46 PDIa famil 99.7 6.4E-17 1.4E-21 126.8 10.3 102 47-165 1-102 (102)
15 cd03001 PDI_a_P5 PDIa family, 99.7 1.1E-16 2.3E-21 125.7 11.2 101 48-165 2-102 (103)
16 cd03007 PDI_a_ERp29_N PDIa fam 99.7 9E-17 2E-21 130.0 10.6 103 46-169 1-116 (116)
17 PRK09381 trxA thioredoxin; Pro 99.7 2.3E-16 5E-21 125.8 12.0 107 45-169 2-108 (109)
18 cd02993 PDI_a_APS_reductase PD 99.7 2.2E-16 4.8E-21 126.4 10.7 105 47-165 2-109 (109)
19 cd02954 DIM1 Dim1 family; Dim1 99.7 5E-16 1.1E-20 125.3 11.7 104 53-167 2-109 (114)
20 cd02998 PDI_a_ERp38 PDIa famil 99.7 7.5E-16 1.6E-20 120.9 10.5 104 47-165 1-105 (105)
21 PRK10996 thioredoxin 2; Provis 99.6 1.8E-15 3.9E-20 126.6 11.9 105 46-169 35-139 (139)
22 TIGR01126 pdi_dom protein disu 99.6 1.3E-15 2.9E-20 118.8 10.2 102 51-169 1-102 (102)
23 KOG0190|consensus 99.6 6.2E-16 1.3E-20 151.5 10.2 114 44-173 23-136 (493)
24 cd02963 TRX_DnaJ TRX domain, D 99.6 1.2E-15 2.6E-20 122.7 10.0 104 49-167 7-110 (111)
25 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 3E-15 6.6E-20 117.3 11.0 104 47-165 1-104 (104)
26 cd02965 HyaE HyaE family; HyaE 99.6 2.6E-15 5.6E-20 120.5 10.5 101 42-161 6-108 (111)
27 cd02956 ybbN ybbN protein fami 99.6 2.7E-15 5.8E-20 116.7 10.2 95 54-165 1-95 (96)
28 cd02957 Phd_like Phosducin (Ph 99.6 2.2E-15 4.7E-20 121.5 9.1 83 46-140 4-86 (113)
29 cd02962 TMX2 TMX2 family; comp 99.6 4.8E-15 1E-19 125.9 10.8 85 46-140 28-118 (152)
30 cd02997 PDI_a_PDIR PDIa family 99.6 5.9E-15 1.3E-19 115.8 10.6 101 48-165 2-104 (104)
31 cd02961 PDI_a_family Protein D 99.6 4.7E-15 1E-19 114.4 9.9 101 49-165 1-101 (101)
32 PLN02309 5'-adenylylsulfate re 99.6 4E-15 8.7E-20 146.2 11.3 114 42-168 341-456 (457)
33 cd02999 PDI_a_ERp44_like PDIa 99.6 4.5E-15 9.8E-20 117.3 9.2 92 55-165 8-100 (100)
34 PHA02278 thioredoxin-like prot 99.6 8.3E-15 1.8E-19 116.5 9.9 93 53-164 4-100 (103)
35 cd02992 PDI_a_QSOX PDIa family 99.6 1.9E-14 4E-19 116.4 11.9 87 46-141 1-89 (114)
36 cd02987 Phd_like_Phd Phosducin 99.6 1.5E-14 3.3E-19 125.7 11.6 123 34-168 46-174 (175)
37 TIGR00424 APS_reduc 5'-adenyly 99.6 1.7E-14 3.6E-19 142.0 12.2 112 44-168 349-462 (463)
38 cd02985 TRX_CDSP32 TRX family, 99.6 3E-14 6.5E-19 113.0 11.1 97 52-167 2-101 (103)
39 PTZ00102 disulphide isomerase; 99.6 3.4E-14 7.4E-19 140.7 14.1 112 46-174 32-143 (477)
40 KOG0907|consensus 99.6 2E-14 4.3E-19 114.9 9.4 85 66-168 21-105 (106)
41 TIGR01068 thioredoxin thioredo 99.6 4.7E-14 1E-18 109.5 11.0 101 51-169 1-101 (101)
42 cd02986 DLP Dim1 family, Dim1- 99.5 5.1E-14 1.1E-18 113.1 11.2 103 53-167 2-109 (114)
43 cd02948 TRX_NDPK TRX domain, T 99.5 5E-14 1.1E-18 111.4 10.6 96 52-167 6-101 (102)
44 PLN00410 U5 snRNP protein, DIM 99.5 5.4E-14 1.2E-18 117.7 11.3 114 53-182 11-137 (142)
45 cd02989 Phd_like_TxnDC9 Phosdu 99.5 1E-13 2.2E-18 112.0 10.4 105 47-165 5-112 (113)
46 KOG0908|consensus 99.5 7.9E-14 1.7E-18 124.4 9.7 108 47-173 2-110 (288)
47 cd03000 PDI_a_TMX3 PDIa family 99.5 1.6E-13 3.6E-18 108.6 9.8 101 49-168 3-103 (104)
48 TIGR01130 ER_PDI_fam protein d 99.5 2E-13 4.4E-18 134.0 12.5 112 47-173 2-113 (462)
49 cd02988 Phd_like_VIAF Phosduci 99.5 2.1E-13 4.5E-18 120.2 10.9 121 34-168 67-191 (192)
50 cd02984 TRX_PICOT TRX domain, 99.5 2.3E-13 5E-18 105.7 9.9 96 52-165 1-96 (97)
51 PTZ00102 disulphide isomerase; 99.5 2.4E-13 5.1E-18 134.7 11.0 112 46-172 357-468 (477)
52 KOG0190|consensus 99.4 4.4E-13 9.5E-18 131.6 9.7 109 46-170 366-474 (493)
53 cd02975 PfPDO_like_N Pyrococcu 99.4 1.5E-12 3.2E-17 105.2 9.9 90 66-170 22-111 (113)
54 cd02953 DsbDgamma DsbD gamma f 99.4 1.4E-12 3.1E-17 103.0 9.6 95 54-166 2-104 (104)
55 cd02982 PDI_b'_family Protein 99.4 3.4E-12 7.4E-17 100.2 9.5 89 66-168 12-102 (103)
56 cd02949 TRX_NTR TRX domain, no 99.4 5.1E-12 1.1E-16 98.8 9.9 85 66-166 13-97 (97)
57 cd02950 TxlA TRX-like protein 99.4 7.2E-12 1.6E-16 105.2 11.1 100 54-171 11-112 (142)
58 TIGR01130 ER_PDI_fam protein d 99.3 7.3E-12 1.6E-16 123.0 11.8 114 46-174 346-459 (462)
59 cd02947 TRX_family TRX family; 99.3 1.1E-11 2.4E-16 93.5 9.7 92 54-165 1-92 (93)
60 cd02952 TRP14_like Human TRX-r 99.3 5.7E-12 1.2E-16 102.7 8.3 80 52-142 8-102 (119)
61 PTZ00051 thioredoxin; Provisio 99.3 9.1E-12 2E-16 96.9 8.8 79 48-140 2-81 (98)
62 TIGR01295 PedC_BrcD bacterioci 99.3 3.5E-11 7.5E-16 98.6 10.9 100 46-166 6-121 (122)
63 KOG4277|consensus 99.3 9.4E-12 2E-16 113.9 7.2 93 64-170 41-133 (468)
64 TIGR00411 redox_disulf_1 small 99.2 7.4E-11 1.6E-15 88.6 9.6 79 70-168 3-81 (82)
65 KOG1731|consensus 99.2 1.8E-11 4E-16 120.5 7.1 88 44-140 37-126 (606)
66 cd02951 SoxW SoxW family; SoxW 99.2 7.2E-11 1.6E-15 96.4 9.2 89 67-170 15-120 (125)
67 KOG0912|consensus 99.2 3.3E-11 7.1E-16 110.5 7.8 110 51-173 1-110 (375)
68 KOG0191|consensus 99.2 1.1E-10 2.3E-15 113.4 9.6 111 46-174 29-139 (383)
69 TIGR02187 GlrX_arch Glutaredox 99.2 7.1E-11 1.5E-15 105.8 7.1 103 52-172 9-114 (215)
70 KOG0191|consensus 99.1 2.9E-10 6.4E-15 110.3 9.6 112 46-172 143-255 (383)
71 TIGR02187 GlrX_arch Glutaredox 99.1 2E-09 4.3E-14 96.4 12.3 98 48-167 117-214 (215)
72 PRK00293 dipZ thiol:disulfide 99.0 1E-09 2.2E-14 111.7 11.0 107 48-168 454-569 (571)
73 cd02959 ERp19 Endoplasmic reti 99.0 3.8E-10 8.2E-15 91.7 6.2 69 65-143 18-89 (117)
74 PTZ00062 glutaredoxin; Provisi 99.0 1.8E-09 3.9E-14 96.0 10.6 92 52-171 5-96 (204)
75 cd02973 TRX_GRX_like Thioredox 99.0 1.7E-09 3.7E-14 78.4 7.1 56 70-136 3-58 (67)
76 PHA02125 thioredoxin-like prot 98.8 6E-09 1.3E-13 77.8 5.5 50 70-135 2-51 (75)
77 PRK14018 trifunctional thiored 98.8 2.4E-08 5.2E-13 99.9 11.2 102 49-166 41-170 (521)
78 PRK11509 hydrogenase-1 operon 98.8 8E-08 1.7E-12 79.5 12.2 110 47-172 18-127 (132)
79 PRK03147 thiol-disulfide oxido 98.8 5.1E-08 1.1E-12 83.5 10.3 88 67-168 62-171 (173)
80 cd02955 SSP411 TRX domain, SSP 98.8 3.1E-08 6.6E-13 81.4 8.0 79 52-143 4-93 (124)
81 TIGR02738 TrbB type-F conjugat 98.7 1.2E-07 2.7E-12 80.6 11.6 86 69-168 53-152 (153)
82 TIGR02740 TraF-like TraF-like 98.7 5.3E-08 1.1E-12 90.4 9.6 91 66-170 166-265 (271)
83 TIGR00412 redox_disulf_2 small 98.7 6.7E-08 1.4E-12 72.4 8.0 72 71-165 3-75 (76)
84 PF13098 Thioredoxin_2: Thiore 98.7 3.6E-08 7.8E-13 78.4 6.3 86 65-165 4-112 (112)
85 KOG0913|consensus 98.7 9.1E-09 2E-13 91.6 2.2 105 47-172 25-129 (248)
86 cd02964 TryX_like_family Trypa 98.6 1.2E-07 2.5E-12 78.2 7.1 71 66-143 17-112 (132)
87 cd03009 TryX_like_TryX_NRX Try 98.6 1.9E-07 4.2E-12 76.5 8.2 71 66-143 18-112 (131)
88 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 2.2E-07 4.8E-12 71.8 6.4 57 69-136 15-71 (89)
89 TIGR00385 dsbE periplasmic pro 98.5 2.5E-07 5.3E-12 80.0 6.8 96 66-170 63-172 (173)
90 cd03008 TryX_like_RdCVF Trypar 98.5 4.2E-07 9.2E-12 76.7 8.0 74 66-143 25-125 (146)
91 PRK15412 thiol:disulfide inter 98.5 1.4E-06 2.9E-11 76.3 11.5 87 66-170 68-177 (185)
92 cd02966 TlpA_like_family TlpA- 98.5 7.8E-07 1.7E-11 69.3 8.2 67 67-142 20-109 (116)
93 cd02958 UAS UAS family; UAS is 98.4 1.6E-06 3.4E-11 69.7 9.5 100 55-169 5-111 (114)
94 PF07912 ERp29_N: ERp29, N-ter 98.4 4.1E-06 8.9E-11 67.8 11.1 113 46-173 4-123 (126)
95 cd03010 TlpA_like_DsbE TlpA-li 98.4 1.2E-06 2.6E-11 71.3 7.9 73 66-142 25-112 (127)
96 cd03011 TlpA_like_ScsD_MtbDsbE 98.3 2.4E-06 5.2E-11 68.9 8.4 86 67-163 21-120 (123)
97 PF13899 Thioredoxin_7: Thiore 98.3 4.2E-07 9E-12 68.8 3.6 64 65-139 16-82 (82)
98 PRK13728 conjugal transfer pro 98.3 3.2E-06 7E-11 73.7 8.7 92 66-172 70-174 (181)
99 KOG0914|consensus 98.3 3.3E-06 7.2E-11 74.6 8.7 84 48-141 126-216 (265)
100 PF13848 Thioredoxin_6: Thiore 98.3 1.4E-05 2.9E-10 68.7 12.2 119 33-167 64-184 (184)
101 PF02114 Phosducin: Phosducin; 98.3 4E-06 8.6E-11 77.5 9.3 109 47-168 126-237 (265)
102 PLN02919 haloacid dehalogenase 98.3 3.5E-06 7.6E-11 91.6 9.9 91 66-170 420-537 (1057)
103 PF13905 Thioredoxin_8: Thiore 98.3 5.4E-06 1.2E-10 63.8 8.3 66 68-141 3-93 (95)
104 COG4232 Thiol:disulfide interc 98.2 3.2E-06 6.8E-11 84.6 8.2 99 55-168 464-567 (569)
105 PF01216 Calsequestrin: Calseq 98.2 9E-06 1.9E-10 76.5 9.2 119 41-176 29-151 (383)
106 smart00594 UAS UAS domain. 98.1 1.4E-05 3.1E-10 65.1 9.1 103 53-165 13-121 (122)
107 cd02967 mauD Methylamine utili 98.1 3.3E-06 7.1E-11 67.1 5.1 59 67-135 22-83 (114)
108 TIGR02196 GlrX_YruB Glutaredox 98.1 1.2E-05 2.7E-10 58.1 6.5 69 70-166 2-74 (74)
109 cd02960 AGR Anterior Gradient 98.1 4E-05 8.7E-10 63.4 9.9 78 55-143 11-92 (130)
110 cd01659 TRX_superfamily Thiore 98.1 1.5E-05 3.3E-10 54.3 6.4 60 70-140 1-63 (69)
111 TIGR02661 MauD methylamine deh 98.0 2.7E-05 5.8E-10 68.4 9.2 86 66-167 74-177 (189)
112 cd03012 TlpA_like_DipZ_like Tl 98.0 2.6E-05 5.7E-10 63.5 8.1 67 67-142 24-117 (126)
113 PF06110 DUF953: Eukaryotic pr 97.9 6.6E-05 1.4E-09 61.1 9.0 81 54-140 6-99 (119)
114 COG0526 TrxA Thiol-disulfide i 97.9 3.6E-05 7.8E-10 59.0 6.4 65 66-140 32-99 (127)
115 PF13728 TraF: F plasmid trans 97.8 0.00012 2.7E-09 65.6 9.3 83 68-164 122-213 (215)
116 TIGR02200 GlrX_actino Glutared 97.7 8.4E-05 1.8E-09 54.5 5.4 54 70-140 2-60 (77)
117 cd02969 PRX_like1 Peroxiredoxi 97.7 0.00026 5.7E-09 60.7 9.3 95 67-170 26-153 (171)
118 KOG3425|consensus 97.7 0.0002 4.4E-09 57.7 7.6 81 54-140 13-105 (128)
119 cd03072 PDI_b'_ERp44 PDIb' fam 97.6 0.00072 1.6E-08 54.3 9.8 103 48-169 1-108 (111)
120 COG2143 Thioredoxin-related pr 97.6 0.00093 2E-08 56.5 10.6 95 62-165 38-145 (182)
121 TIGR02180 GRX_euk Glutaredoxin 97.5 0.00015 3.2E-09 54.2 5.0 55 70-136 1-60 (84)
122 PF05768 DUF836: Glutaredoxin- 97.5 0.00031 6.7E-09 53.1 6.2 80 70-166 2-81 (81)
123 cd03073 PDI_b'_ERp72_ERp57 PDI 97.4 0.0013 2.8E-08 52.9 9.4 105 48-168 1-110 (111)
124 PLN02399 phospholipid hydroper 97.4 0.0009 1.9E-08 60.9 9.4 42 66-116 99-140 (236)
125 PTZ00056 glutathione peroxidas 97.4 0.00078 1.7E-08 59.7 8.6 41 67-116 40-80 (199)
126 PF14595 Thioredoxin_9: Thiore 97.4 0.00053 1.1E-08 56.7 6.6 80 49-141 26-108 (129)
127 KOG1672|consensus 97.4 0.00099 2.1E-08 58.2 8.4 105 48-168 68-177 (211)
128 PRK15317 alkyl hydroperoxide r 97.3 0.00094 2E-08 67.5 9.3 135 47-205 99-235 (517)
129 cd03015 PRX_Typ2cys Peroxiredo 97.3 0.0013 2.8E-08 56.6 8.9 109 68-182 31-171 (173)
130 TIGR02739 TraF type-F conjugat 97.3 0.0015 3.2E-08 60.2 9.6 88 68-169 152-248 (256)
131 cd02983 P5_C P5 family, C-term 97.3 0.0015 3.2E-08 54.0 8.3 110 47-172 3-118 (130)
132 KOG2501|consensus 97.3 0.00044 9.6E-09 58.6 5.1 72 66-142 33-127 (157)
133 cd02976 NrdH NrdH-redoxin (Nrd 97.2 0.00085 1.8E-08 48.2 5.8 68 70-165 2-73 (73)
134 TIGR01626 ytfJ_HI0045 conserve 97.2 0.0029 6.2E-08 55.5 10.0 91 65-164 58-175 (184)
135 PRK13703 conjugal pilus assemb 97.2 0.0021 4.7E-08 58.8 9.6 87 68-168 145-240 (248)
136 cd02991 UAS_ETEA UAS family, E 97.2 0.002 4.4E-08 52.2 8.0 107 55-170 5-114 (116)
137 PRK11200 grxA glutaredoxin 1; 97.2 0.00085 1.9E-08 50.8 5.4 76 70-170 3-84 (85)
138 PLN02412 probable glutathione 97.2 0.0024 5.3E-08 54.8 8.7 41 67-116 30-70 (167)
139 PF08534 Redoxin: Redoxin; In 97.0 0.0031 6.8E-08 52.2 8.0 69 67-143 29-127 (146)
140 cd00340 GSH_Peroxidase Glutath 96.9 0.0029 6.4E-08 53.2 7.0 40 67-116 23-62 (152)
141 TIGR02540 gpx7 putative glutat 96.9 0.0063 1.4E-07 51.2 9.0 40 68-116 24-63 (153)
142 PRK10382 alkyl hydroperoxide r 96.9 0.0068 1.5E-07 53.3 9.0 109 68-182 33-171 (187)
143 cd03016 PRX_1cys Peroxiredoxin 96.9 0.0047 1E-07 54.8 8.1 106 67-182 27-168 (203)
144 TIGR03137 AhpC peroxiredoxin. 96.9 0.0056 1.2E-07 53.5 8.4 107 68-182 33-171 (187)
145 PRK10877 protein disulfide iso 96.8 0.0028 6E-08 57.6 6.6 89 66-168 107-230 (232)
146 PF13192 Thioredoxin_3: Thiore 96.8 0.0045 9.8E-08 46.0 6.5 67 81-166 9-76 (76)
147 PRK13190 putative peroxiredoxi 96.8 0.0053 1.1E-07 54.5 7.9 110 67-182 29-168 (202)
148 PF00462 Glutaredoxin: Glutare 96.8 0.0038 8.1E-08 43.9 5.6 51 70-136 1-55 (60)
149 KOG3356|consensus 96.8 0.00031 6.8E-09 55.9 -0.2 100 210-312 28-134 (147)
150 TIGR03140 AhpF alkyl hydropero 96.7 0.011 2.4E-07 59.7 10.4 134 47-204 100-235 (515)
151 PRK13599 putative peroxiredoxi 96.7 0.0093 2E-07 53.5 8.6 110 67-182 30-170 (215)
152 cd02981 PDI_b_family Protein D 96.5 0.034 7.4E-07 42.6 10.0 94 49-167 2-96 (97)
153 PRK15000 peroxidase; Provision 96.5 0.014 2.9E-07 51.8 8.6 111 67-182 35-176 (200)
154 KOG3170|consensus 96.5 0.027 5.8E-07 49.6 10.0 106 47-169 92-201 (240)
155 PTZ00256 glutathione peroxidas 96.5 0.015 3.3E-07 50.6 8.7 39 69-116 44-82 (183)
156 cd03020 DsbA_DsbC_DsbG DsbA fa 96.5 0.0043 9.4E-08 54.5 5.3 85 67-165 78-197 (197)
157 cd03419 GRX_GRXh_1_2_like Glut 96.5 0.0047 1E-07 45.8 4.6 52 70-135 2-58 (82)
158 TIGR02183 GRXA Glutaredoxin, G 96.4 0.008 1.7E-07 45.8 5.2 77 70-171 2-84 (86)
159 KOG0911|consensus 96.3 0.0018 3.8E-08 57.9 1.7 65 65-140 16-80 (227)
160 PRK10329 glutaredoxin-like pro 96.3 0.019 4.2E-07 43.3 7.0 72 70-169 3-77 (81)
161 TIGR03143 AhpF_homolog putativ 96.3 0.033 7.1E-07 56.9 10.7 96 47-165 459-554 (555)
162 cd03017 PRX_BCP Peroxiredoxin 96.3 0.023 4.9E-07 46.4 7.9 30 68-101 25-55 (140)
163 TIGR02194 GlrX_NrdH Glutaredox 96.2 0.0086 1.9E-07 43.8 4.7 66 71-163 2-70 (72)
164 cd02970 PRX_like2 Peroxiredoxi 96.2 0.013 2.7E-07 48.3 6.3 47 67-122 25-71 (149)
165 PRK13189 peroxiredoxin; Provis 96.2 0.024 5.1E-07 51.1 8.1 111 66-182 36-177 (222)
166 cd02066 GRX_family Glutaredoxi 96.2 0.014 3E-07 41.4 5.4 51 70-136 2-56 (72)
167 PTZ00137 2-Cys peroxiredoxin; 96.2 0.032 6.9E-07 51.6 9.0 109 68-182 100-239 (261)
168 PF00578 AhpC-TSA: AhpC/TSA fa 96.1 0.019 4.1E-07 45.8 6.7 43 68-118 27-69 (124)
169 KOG3171|consensus 96.0 0.045 9.7E-07 48.8 8.6 109 48-168 140-250 (273)
170 PF13848 Thioredoxin_6: Thiore 96.0 0.041 9E-07 46.9 8.5 80 87-181 7-87 (184)
171 PRK00522 tpx lipid hydroperoxi 96.0 0.016 3.6E-07 49.6 5.9 29 67-99 45-74 (167)
172 PRK13191 putative peroxiredoxi 95.9 0.035 7.6E-07 49.8 8.0 111 66-182 34-175 (215)
173 TIGR02181 GRX_bact Glutaredoxi 95.9 0.013 2.9E-07 43.4 4.3 51 70-136 1-55 (79)
174 cd03067 PDI_b_PDIR_N PDIb fami 95.8 0.066 1.4E-06 42.2 7.7 98 50-167 5-110 (112)
175 cd03418 GRX_GRXb_1_3_like Glut 95.7 0.025 5.4E-07 41.2 5.3 50 70-135 2-56 (75)
176 PF07449 HyaE: Hydrogenase-1 e 95.6 0.064 1.4E-06 42.8 7.5 89 41-140 4-92 (107)
177 TIGR02190 GlrX-dom Glutaredoxi 95.5 0.032 6.9E-07 41.6 5.2 55 66-136 6-63 (79)
178 cd03014 PRX_Atyp2cys Peroxired 95.5 0.042 9.1E-07 45.2 6.3 40 68-118 28-68 (143)
179 PTZ00253 tryparedoxin peroxida 95.4 0.084 1.8E-06 46.5 8.2 107 68-182 38-178 (199)
180 PF03190 Thioredox_DsbH: Prote 95.3 0.02 4.3E-07 49.1 3.9 81 50-143 24-115 (163)
181 cd02968 SCO SCO (an acronym fo 95.3 0.039 8.4E-07 45.1 5.5 44 68-117 24-68 (142)
182 TIGR02189 GlrX-like_plant Glut 95.2 0.046 1E-06 42.9 5.3 50 70-135 10-66 (99)
183 cd02971 PRX_family Peroxiredox 95.1 0.071 1.5E-06 43.4 6.7 42 68-118 24-66 (140)
184 PF11009 DUF2847: Protein of u 95.0 0.082 1.8E-06 42.1 6.3 94 52-161 6-104 (105)
185 cd02972 DsbA_family DsbA famil 94.9 0.095 2.1E-06 39.1 6.4 59 70-138 1-91 (98)
186 cd03018 PRX_AhpE_like Peroxire 94.9 0.055 1.2E-06 44.7 5.3 41 69-118 31-72 (149)
187 PRK09437 bcp thioredoxin-depen 94.9 0.15 3.3E-06 42.5 8.1 31 68-101 32-62 (154)
188 cd03027 GRX_DEP Glutaredoxin ( 94.8 0.087 1.9E-06 38.4 5.6 51 70-136 3-57 (73)
189 PRK10606 btuE putative glutath 94.7 0.11 2.3E-06 45.5 7.0 41 67-117 26-66 (183)
190 cd03029 GRX_hybridPRX5 Glutare 94.6 0.091 2E-06 38.1 5.3 50 70-135 3-55 (72)
191 KOG3414|consensus 94.6 0.6 1.3E-05 38.3 10.3 113 57-182 15-137 (142)
192 PRK10638 glutaredoxin 3; Provi 94.4 0.093 2E-06 39.4 5.0 51 70-136 4-58 (83)
193 PHA03050 glutaredoxin; Provisi 94.2 0.13 2.7E-06 41.1 5.7 54 70-136 15-75 (108)
194 COG0695 GrxC Glutaredoxin and 93.9 0.15 3.3E-06 38.3 5.4 51 70-136 3-59 (80)
195 cd03069 PDI_b_ERp57 PDIb famil 93.8 0.69 1.5E-05 36.3 9.2 97 49-168 3-103 (104)
196 cd03028 GRX_PICOT_like Glutare 93.1 0.29 6.4E-06 37.4 5.9 56 68-136 9-69 (90)
197 TIGR03143 AhpF_homolog putativ 93.0 0.68 1.5E-05 47.3 10.1 62 68-140 368-429 (555)
198 cd03066 PDI_b_Calsequestrin_mi 92.7 1.6 3.4E-05 34.0 9.6 98 48-168 2-100 (102)
199 TIGR00365 monothiol glutaredox 92.2 0.65 1.4E-05 36.1 6.8 44 81-136 26-73 (97)
200 cd03023 DsbA_Com1_like DsbA fa 91.4 0.46 1E-05 38.8 5.5 29 67-99 6-34 (154)
201 KOG1752|consensus 90.9 0.75 1.6E-05 36.5 5.9 53 70-136 16-73 (104)
202 cd03068 PDI_b_ERp72 PDIb famil 89.9 3.5 7.6E-05 32.6 9.1 100 48-168 2-107 (107)
203 PRK12759 bifunctional gluaredo 89.7 0.57 1.2E-05 46.2 5.3 51 70-136 4-66 (410)
204 PF02966 DIM1: Mitosis protein 89.0 6 0.00013 32.7 9.9 100 56-167 11-115 (133)
205 TIGR02742 TrbC_Ftype type-F co 86.5 1.5 3.3E-05 36.2 5.1 54 115-168 56-114 (130)
206 PF13462 Thioredoxin_4: Thiore 86.2 2 4.3E-05 35.6 5.9 48 64-119 10-57 (162)
207 cd03074 PDI_b'_Calsequestrin_C 86.1 13 0.00028 29.8 9.8 108 50-168 5-119 (120)
208 PF09673 TrbC_Ftype: Type-F co 85.9 2.3 5.1E-05 34.1 5.8 71 53-139 10-80 (113)
209 PRK10824 glutaredoxin-4; Provi 85.9 1.2 2.7E-05 36.0 4.2 55 70-136 17-76 (115)
210 PTZ00062 glutaredoxin; Provisi 83.9 6.6 0.00014 35.0 8.3 86 34-136 85-174 (204)
211 PRK10954 periplasmic protein d 80.2 1.8 3.9E-05 38.3 3.3 38 69-116 40-80 (207)
212 cd03019 DsbA_DsbA DsbA family, 78.9 3.2 6.9E-05 35.0 4.4 29 67-99 16-44 (178)
213 PF01307 Plant_vir_prot: Plant 77.0 8.5 0.00018 30.5 5.9 57 177-255 3-63 (104)
214 cd03031 GRX_GRX_like Glutaredo 72.9 11 0.00024 31.7 6.0 56 69-136 2-66 (147)
215 KOG4277|consensus 69.4 29 0.00064 32.9 8.3 81 81-169 266-351 (468)
216 PRK11657 dsbG disulfide isomer 67.7 6.1 0.00013 36.2 3.6 26 67-96 118-143 (251)
217 COG1999 Uncharacterized protei 64.1 24 0.00052 31.3 6.6 60 65-128 66-127 (207)
218 PF02630 SCO1-SenC: SCO1/SenC; 63.1 11 0.00024 32.4 4.1 54 66-126 52-109 (174)
219 PRK03776 phosphoglycerol trans 61.8 59 0.0013 34.8 9.8 75 197-279 15-92 (762)
220 KOG2640|consensus 59.1 6.1 0.00013 37.3 1.9 88 66-170 76-163 (319)
221 cd02978 KaiB_like KaiB-like fa 56.3 38 0.00082 25.1 5.3 62 69-139 3-64 (72)
222 PF00837 T4_deiodinase: Iodoth 53.9 12 0.00027 34.0 3.0 61 46-118 82-144 (237)
223 PRK13730 conjugal transfer pil 53.7 23 0.0005 31.6 4.5 42 119-167 151-192 (212)
224 cd02977 ArsC_family Arsenate R 53.4 14 0.00031 28.6 3.0 88 71-179 2-94 (105)
225 PF01216 Calsequestrin: Calseq 51.7 2.2E+02 0.0048 27.7 10.9 128 29-180 129-258 (383)
226 PRK11657 dsbG disulfide isomer 51.7 12 0.00025 34.4 2.5 43 119-167 208-250 (251)
227 PF11085 YqhR: Conserved membr 49.5 53 0.0012 28.4 6.0 46 266-311 101-148 (173)
228 PF06570 DUF1129: Protein of u 48.1 25 0.00054 31.1 4.0 36 248-285 101-136 (206)
229 PF11287 DUF3088: Protein of u 48.0 82 0.0018 25.3 6.4 85 77-172 19-110 (112)
230 cd03013 PRX5_like Peroxiredoxi 48.0 47 0.001 27.8 5.5 55 69-128 32-88 (155)
231 TIGR02654 circ_KaiB circadian 47.9 60 0.0013 24.9 5.5 64 68-140 4-67 (87)
232 COG3088 CcmH Uncharacterized p 44.5 42 0.0009 28.4 4.5 36 153-188 75-110 (153)
233 PRK09301 circadian clock prote 43.9 78 0.0017 25.1 5.7 65 67-140 6-70 (103)
234 PF03383 Serpentine_r_xa: Caen 42.9 29 0.00062 29.5 3.3 65 163-227 37-102 (153)
235 PF13462 Thioredoxin_4: Thiore 41.9 42 0.00091 27.4 4.2 38 119-167 125-162 (162)
236 cd03040 GST_N_mPGES2 GST_N fam 40.6 1.3E+02 0.0028 21.3 6.4 74 70-170 2-77 (77)
237 cd03060 GST_N_Omega_like GST_N 40.2 56 0.0012 23.0 4.2 52 71-136 2-54 (71)
238 TIGR03147 cyt_nit_nrfF cytochr 40.1 88 0.0019 25.7 5.6 29 153-181 71-99 (126)
239 PF11744 ALMT: Aluminium activ 39.6 60 0.0013 32.1 5.5 36 197-232 26-61 (406)
240 PRK12559 transcriptional regul 39.0 30 0.00066 28.3 2.9 35 70-120 2-36 (131)
241 COG2761 FrnE Predicted dithiol 38.2 57 0.0012 29.6 4.7 44 120-173 174-217 (225)
242 cd03036 ArsC_like Arsenate Red 37.2 39 0.00084 26.7 3.2 88 71-179 2-95 (111)
243 COG3634 AhpF Alkyl hydroperoxi 35.9 1E+02 0.0022 30.2 6.2 131 48-204 100-234 (520)
244 PRK01655 spxA transcriptional 34.5 52 0.0011 26.9 3.6 35 70-120 2-36 (131)
245 CHL00036 ycf4 photosystem I as 34.2 94 0.002 27.2 5.2 52 212-277 22-77 (184)
246 PRK10144 formate-dependent nit 33.6 1.3E+02 0.0028 24.7 5.7 29 153-181 71-99 (126)
247 TIGR01617 arsC_related transcr 33.3 52 0.0011 26.1 3.3 35 71-121 2-36 (117)
248 cd00570 GST_N_family Glutathio 33.1 64 0.0014 21.4 3.4 51 72-136 3-55 (71)
249 PRK13344 spxA transcriptional 31.6 49 0.0011 27.2 3.0 35 70-120 2-36 (132)
250 COG0295 Cdd Cytidine deaminase 31.5 61 0.0013 27.0 3.5 33 61-93 66-99 (134)
251 PRK02542 photosystem I assembl 31.4 1.1E+02 0.0024 26.9 5.1 52 212-277 26-81 (188)
252 cd03035 ArsC_Yffb Arsenate Red 31.0 58 0.0012 25.5 3.2 34 71-120 2-35 (105)
253 COG1651 DsbG Protein-disulfide 28.7 3.3E+02 0.0071 24.1 8.2 42 48-94 67-108 (244)
254 PF06764 DUF1223: Protein of u 26.4 80 0.0017 28.1 3.6 27 69-99 1-27 (202)
255 PHA02132 hypothetical protein 26.3 1.1E+02 0.0024 22.5 3.6 28 256-283 1-28 (86)
256 cd03032 ArsC_Spx Arsenate Redu 25.2 1.2E+02 0.0026 23.9 4.1 89 70-179 2-94 (115)
257 PF07689 KaiB: KaiB domain; I 25.0 44 0.00095 25.3 1.4 50 85-139 11-60 (82)
258 COG1331 Highly conserved prote 24.9 1.3E+02 0.0029 31.6 5.3 80 51-143 31-121 (667)
259 PF04224 DUF417: Protein of un 24.8 1E+02 0.0022 26.8 3.8 25 287-311 106-130 (175)
260 PF03929 PepSY_TM: PepSY-assoc 24.7 88 0.0019 18.5 2.4 19 211-229 6-24 (27)
261 cd03051 GST_N_GTT2_like GST_N 23.9 1.5E+02 0.0033 20.3 4.1 52 71-136 2-57 (74)
262 COG0573 PstC ABC-type phosphat 23.2 1.4E+02 0.0029 28.5 4.6 49 231-279 42-96 (310)
263 cd02967 mauD Methylamine utili 22.8 70 0.0015 24.4 2.3 23 120-142 85-107 (114)
264 PF06220 zf-U1: U1 zinc finger 22.4 30 0.00066 22.1 0.1 12 78-89 2-13 (38)
265 PF09323 DUF1980: Domain of un 22.2 1.1E+02 0.0023 26.5 3.5 25 36-60 145-169 (182)
266 PF13743 Thioredoxin_5: Thiore 22.0 1.3E+02 0.0029 25.6 4.1 25 72-100 2-26 (176)
267 TIGR03061 pip_yhgE_Nterm YhgE/ 21.6 1.3E+02 0.0029 25.2 3.9 42 205-246 4-53 (164)
268 cd03059 GST_N_SspA GST_N famil 21.5 1.2E+02 0.0026 21.0 3.2 70 71-168 2-72 (73)
269 COG4713 Predicted membrane pro 21.0 73 0.0016 31.2 2.3 65 229-293 328-399 (489)
270 cd03041 GST_N_2GST_N GST_N fam 20.9 3.2E+02 0.0069 19.4 7.3 71 70-168 2-76 (77)
271 cd03037 GST_N_GRX2 GST_N famil 20.1 1.8E+02 0.0039 20.1 3.9 50 72-135 3-52 (71)
272 PRK08578 preprotein translocas 20.0 98 0.0021 29.0 3.0 23 209-231 11-33 (292)
No 1
>KOG2603|consensus
Probab=100.00 E-value=1.3e-67 Score=479.33 Aligned_cols=283 Identities=46% Similarity=0.865 Sum_probs=264.4
Q ss_pred hHHHHHHHHhhhhCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCC--cE
Q psy8429 32 LGDRVLHLSEMNAKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSN--KL 109 (314)
Q Consensus 32 ~~~~~~~L~~l~~~~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~--~v 109 (314)
+++++.+|.+|.++++||++||++|+++++.+||||+++|+|||.+|+..|+.|++++.||..||++|..++++++ ++
T Consensus 26 ls~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tkl 105 (331)
T KOG2603|consen 26 LSNKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKL 105 (331)
T ss_pred HHHHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999998766555 99
Q ss_pred EEEEEECCCCcchHHhCCcccCceEEEecCC-CCCCCCCccceeecccCHHHHHHHHHhhcCCcc-eeeCCCCCchhHHH
Q psy8429 110 FFILVDFDEGSDVFQMLRLNTAPIFMHFPAK-GKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI-RVFRPPNYSGPMAF 187 (314)
Q Consensus 110 ~F~~vD~~~~~~lf~~~~v~svPtl~~f~p~-~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~i-~i~~p~~~~~~~~~ 187 (314)
+|++||++|.|++||+++++++||+.+|+|. +..++.++++.++.+.+||++++|++++|++++ .|.||+||+..++.
T Consensus 106 FF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~si~rPp~~s~~iiv 185 (331)
T KOG2603|consen 106 FFCMVDYDESPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVRSIQRPPNYSKPIIV 185 (331)
T ss_pred EEEEEeccccHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheeeeeecCCcccchhHH
Confidence 9999999999999999999999999999776 444556778877778889999999999999996 69999999998888
Q ss_pred HHHHHHHHHHHhhhhcchhhhhhhhhHHHHHHHHHHHhhhhhhhhhhcCCCccccCCC-c-eeEEcCCCcchhHHHHHHH
Q psy8429 188 IMLFAIVAVFLYVKRNNLEFLYNKLMWGVAAVLFCFAMISGQMWNHIRGPPFIHKNQN-G-IAYIHGSSQGQFVLETYIV 265 (314)
Q Consensus 188 ~~~~~~~~~~~~~~k~~~~~l~~~~~w~~~sl~~~~~~isG~mfn~Ir~~P~~~~~~~-G-i~~~~~g~~~QfgiE~~iv 265 (314)
+++++++.+++|.||+++++++||.+|+++|++++++|+||||||+|||+||+++|++ | ++||+|++|+|||+|||+|
T Consensus 186 aliva~i~~li~~k~~~l~fl~~r~~w~~lsl~i~f~~iSG~M~n~IR~~P~~~~dp~~~~~~f~~g~Sq~Qf~aEtfiV 265 (331)
T KOG2603|consen 186 ALIVALIGGLIYKKRSNLTFLSNRTIWAVLSLFIVFFMISGQMWNHIRGPPYAIKDPHTGKVVFIHGSSQAQFGAETFIV 265 (331)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHhheeeeechhHHHHhcCCcceeeCCCCCeEEEEeCCcchhhhhhhHHH
Confidence 8999988888999999999999999999999999999999999999999999999985 5 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCcc--cchhhhhHHHHHHHHHHHHHhhcC
Q psy8429 266 ILLNAAIVVGMILISEAATRKNDVR--VRRTMAVVGLGLVAFFFSVILSIF 314 (314)
Q Consensus 266 ~~lY~~l~~~~i~L~~~~p~~~~~~--~~~~~~~~~~~~~~~~fs~l~sif 314 (314)
+++|+++++++++|++.+...++.. +++.+.+.++.+.+++||+++++|
T Consensus 266 ~lly~~v~ll~vll~~~~~~~~~~~~~k~~~l~~~~i~~~~vFfs~~ls~f 316 (331)
T KOG2603|consen 266 GLLYGVVSLLMVLLTEAATSSKSIDYQKRKMLLIAGLSCVAVFFSVLLSVF 316 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999998887777 778888888999999999999987
No 2
>PF04756 OST3_OST6: OST3 / OST6 family; InterPro: IPR021149 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex.; PDB: 3G7Y_A 3G9B_A 3GA4_A.
Probab=99.98 E-value=2.8e-34 Score=246.06 Aligned_cols=150 Identities=39% Similarity=0.707 Sum_probs=12.8
Q ss_pred HHHHHHHhhcCCcc-eeeCCCCCchh-HHHHHHHHHHHHHHhhhhcchhhhhhhhhHHHHHHHHHHHhhhhhhhhhhcCC
Q psy8429 160 AIVKWIADRTDIQI-RVFRPPNYSGP-MAFIMLFAIVAVFLYVKRNNLEFLYNKLMWGVAAVLFCFAMISGQMWNHIRGP 237 (314)
Q Consensus 160 ~l~~fI~~~~~~~i-~i~~p~~~~~~-~~~~~~~~~~~~~~~~~k~~~~~l~~~~~w~~~sl~~~~~~isG~mfn~Ir~~ 237 (314)
++++|++++++++. ++++|+||+.. ...++++++++++++.||..++.++||.+|+++|++++++++||||||+|||+
T Consensus 1 ~~a~f~~~~t~i~~~~i~~P~~~~~~~~~i~~~i~~~~~~~~~k~~~~~~~~~r~lw~~~sl~~~~~~~SG~mfn~Ir~~ 80 (160)
T PF04756_consen 1 QIAPFVKFRTGIPIFKIYRPPNYSKPSIFITFFIVFVAVFLYIKRSILPFLRSRFLWAVLSLIIILLSTSGYMFNIIRGP 80 (160)
T ss_dssp -HHHHHHHHHHHHT-------S----------------------------------------------------------
T ss_pred ChhhHHHHHcCCCeeEEeCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 58999999999885 99999999875 44455555565567788888888999999999999999999999999999999
Q ss_pred CccccCCCc---eeEEcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccc-hhhhhH-HHHHHHHHHHH
Q psy8429 238 PFIHKNQNG---IAYIHGSSQGQFVLETYIVILLNAAIVVGMILISEAATRKNDVRVR-RTMAVV-GLGLVAFFFSV 309 (314)
Q Consensus 238 P~~~~~~~G---i~~~~~g~~~QfgiE~~iv~~lY~~l~~~~i~L~~~~p~~~~~~~~-~~~~~~-~~~~~~~~fs~ 309 (314)
|++++|+|| ++|++||+|+|||+|||++|++|+++|+++++|++.+|+.++++++ +...+. ..++++.+||+
T Consensus 81 P~~~~~~~g~~~i~f~~g~~~~QfgiE~~iv~~ly~~la~~~i~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 157 (160)
T PF04756_consen 81 PFIGRDPDGSRPIYFFSGGSQGQFGIEGQIVSFLYGVLALGFILLIYAAPKKKNSPKQRRILLISGLALVIYSFFSY 157 (160)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CccccCCCCCCceEEecCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhccccCCcchhhhhHHHHHHHHHHHHHHHH
Confidence 999999987 8999999999999999999999999999999999999877666554 443333 33333444444
No 3
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.81 E-value=1.9e-19 Score=145.63 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=88.8
Q ss_pred hCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchH
Q psy8429 44 AKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVF 123 (314)
Q Consensus 44 ~~~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf 123 (314)
+.++|++||++||++.+.-..++..++|+|||+ ||++|+.+.|+|+++|+.+. +.+.|++||++++++++
T Consensus 7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~----WC~~Ck~l~p~~~~la~~~~------~~v~~~~Vd~d~~~~l~ 76 (113)
T cd03006 7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAP----WDAQSQAARQEFEQVAQKLS------DQVLFVAINCWWPQGKC 76 (113)
T ss_pred CCCCeEEechhhhHHHHhcccCCCEEEEEEECC----CCHHHHHHHHHHHHHHHHhc------CCeEEEEEECCCChHHH
Confidence 456799999999999742123466799999999 99999999999999999985 46999999999999999
Q ss_pred -HhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 124 -QMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 124 -~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
++++|+++||+.+|++|... ..| .|++++++|.+|+
T Consensus 77 ~~~~~I~~~PTl~lf~~g~~~---~~y---~G~~~~~~i~~~~ 113 (113)
T cd03006 77 RKQKHFFYFPVIHLYYRSRGP---IEY---KGPMRAPYMEKFV 113 (113)
T ss_pred HHhcCCcccCEEEEEECCccc---eEE---eCCCCHHHHHhhC
Confidence 58999999999999876321 222 5889999999874
No 4
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.77 E-value=2.6e-18 Score=137.01 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=89.1
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (314)
++|+++|++||++.+. . +..++|.|+|+ ||++|+++.|.|+++|+.+.+..++.+++.|+++|++++++++++
T Consensus 1 ~~v~~l~~~~f~~~i~-~--~~~vlv~F~a~----wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~ 73 (108)
T cd02996 1 SEIVSLTSGNIDDILQ-S--AELVLVNFYAD----WCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADR 73 (108)
T ss_pred CceEEcCHhhHHHHHh-c--CCEEEEEEECC----CCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHh
Confidence 4689999999999873 3 34689999999 999999999999999998864333334699999999999999999
Q ss_pred CCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
++|+++||+++|++|.... ..| .|.++.+.|.+||
T Consensus 74 ~~v~~~Ptl~~~~~g~~~~--~~~---~g~~~~~~l~~fi 108 (108)
T cd02996 74 YRINKYPTLKLFRNGMMMK--REY---RGQRSVEALAEFV 108 (108)
T ss_pred CCCCcCCEEEEEeCCcCcc--eec---CCCCCHHHHHhhC
Confidence 9999999999999863221 222 4788999999885
No 5
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.77 E-value=2.4e-18 Score=136.00 Aligned_cols=103 Identities=18% Similarity=0.260 Sum_probs=86.8
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (314)
++++++|+++|++.+.+. +..++|.|||+ ||++|+.+.|.|+++|+++. +.+.|+++|++++++++++
T Consensus 1 ~~v~~l~~~~f~~~i~~~--~~~v~v~f~a~----wC~~C~~~~p~~~~~~~~~~------~~~~~~~vd~~~~~~~~~~ 68 (104)
T cd03004 1 PSVITLTPEDFPELVLNR--KEPWLVDFYAP----WCGPCQALLPELRKAARALK------GKVKVGSVDCQKYESLCQQ 68 (104)
T ss_pred CcceEcCHHHHHHHHhcC--CCeEEEEEECC----CCHHHHHHHHHHHHHHHHhc------CCcEEEEEECCchHHHHHH
Confidence 358899999999998643 33799999999 99999999999999999985 4699999999999999999
Q ss_pred CCcccCceEEEecCCCCCCCCCccceeecccC-HHHHHHHH
Q psy8429 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYS-AEAIVKWI 165 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~-a~~l~~fI 165 (314)
++|+++||+++|++|++.. ..| .|..+ ++++.+||
T Consensus 69 ~~i~~~Pt~~~~~~g~~~~--~~~---~G~~~~~~~l~~~i 104 (104)
T cd03004 69 ANIRAYPTIRLYPGNASKY--HSY---NGWHRDADSILEFI 104 (104)
T ss_pred cCCCcccEEEEEcCCCCCc--eEc---cCCCCCHHHHHhhC
Confidence 9999999999999873321 122 45565 89999885
No 6
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.77 E-value=3.3e-18 Score=139.61 Aligned_cols=108 Identities=16% Similarity=0.234 Sum_probs=92.6
Q ss_pred CCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCcc--ch--hhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc
Q psy8429 45 KKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHI--CV--SASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS 120 (314)
Q Consensus 45 ~~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~--C~--~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~ 120 (314)
++.|++||++||++.+.++ +..++++|+|. ||+| |+ .++|.++++|..+.+ .+++.|++||+++++
T Consensus 8 ~~~v~~lt~~nF~~~v~~~--~~~vvv~f~a~----wc~p~~Ck~~~~~p~~~~~aa~~l~----~~~v~~~kVD~d~~~ 77 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKY--DVLCLLYHEPV----ESDKEAQKQFQMEELVLELAAQVLE----DKGIGFGLVDSKKDA 77 (120)
T ss_pred CcceeeCChhhHHHHHHhC--CceEEEEECCC----cCChhhChhhcchhhHHHHHHHHhh----cCCCEEEEEeCCCCH
Confidence 4579999999999999755 66899999999 9987 99 889999999988842 156999999999999
Q ss_pred chHHhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhc
Q psy8429 121 DVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (314)
Q Consensus 121 ~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~ 169 (314)
+++++|+|+++||+++|+.| +. .+ ..|.++++.+.+||++..
T Consensus 78 ~La~~~~I~~iPTl~lfk~G-~~-----v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 78 KVAKKLGLDEEDSIYVFKDD-EV-----IE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHHHHcCCccccEEEEEECC-EE-----EE-eeCCCCHHHHHHHHHHHh
Confidence 99999999999999999986 32 23 258889999999998753
No 7
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.77 E-value=5.1e-18 Score=132.66 Aligned_cols=103 Identities=17% Similarity=0.375 Sum_probs=90.3
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCC
Q psy8429 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (314)
Q Consensus 48 VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~ 127 (314)
|+.+|+++|++.+.+ .+..++|+|+++ ||++|+.+.|.|+++|+.+. +++.|+++|++++++++++++
T Consensus 1 v~~lt~~~f~~~i~~--~~~~vvv~f~~~----~C~~C~~~~~~~~~~~~~~~------~~v~~~~vd~~~~~~l~~~~~ 68 (103)
T PF00085_consen 1 VIVLTDENFEKFINE--SDKPVVVYFYAP----WCPPCKAFKPILEKLAKEYK------DNVKFAKVDCDENKELCKKYG 68 (103)
T ss_dssp SEEESTTTHHHHHTT--TSSEEEEEEEST----TSHHHHHHHHHHHHHHHHTT------TTSEEEEEETTTSHHHHHHTT
T ss_pred CEECCHHHHHHHHHc--cCCCEEEEEeCC----CCCccccccceecccccccc------cccccchhhhhccchhhhccC
Confidence 678999999999853 256799999999 99999999999999999986 379999999999999999999
Q ss_pred cccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhh
Q psy8429 128 LNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 128 v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~ 168 (314)
++++|++++|++|... ....+..++++|.+||++|
T Consensus 69 v~~~Pt~~~~~~g~~~------~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 69 VKSVPTIIFFKNGKEV------KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp CSSSSEEEEEETTEEE------EEEESSSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCcEE------EEEECCCCHHHHHHHHHcC
Confidence 9999999999987321 1225778999999999986
No 8
>KOG0910|consensus
Probab=99.76 E-value=2.6e-18 Score=143.16 Aligned_cols=105 Identities=15% Similarity=0.202 Sum_probs=92.2
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCC
Q psy8429 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (314)
Q Consensus 48 VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~ 127 (314)
+-.+++++|++.|.++ +-+|+|+|+|+ ||+||+.+.|..+++++.|. +++.|+++|+|+++++..+|+
T Consensus 45 ~~~~s~~~~~~~Vi~S--~~PVlVdF~A~----WCgPCk~l~P~l~~~~~~~~------g~~k~~kvdtD~~~ela~~Y~ 112 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVINS--DVPVLVDFHAE----WCGPCKMLGPILEELVSEYA------GKFKLYKVDTDEHPELAEDYE 112 (150)
T ss_pred ccccCHHHHHHHHHcc--CCCEEEEEecC----cCccHhHhhHHHHHHHHhhc------CeEEEEEEccccccchHhhcc
Confidence 4557889999999866 45699999999 99999999999999999986 789999999999999999999
Q ss_pred cccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcC
Q psy8429 128 LNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (314)
Q Consensus 128 v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~ 170 (314)
|+++||+++|++| +. .|.-.|..+++.+.+||++.++
T Consensus 113 I~avPtvlvfknG-e~-----~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 113 ISAVPTVLVFKNG-EK-----VDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eeeeeEEEEEECC-EE-----eeeecccCCHHHHHHHHHHHhc
Confidence 9999999999987 32 2333678899999999998764
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.76 E-value=4.8e-18 Score=133.79 Aligned_cols=100 Identities=15% Similarity=0.249 Sum_probs=85.6
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (314)
+.|++||++||++.+. . +..++|+|||+ ||++|+++.|+|+++|+.+. +.+.|+++|++++++++++
T Consensus 1 ~~~~~l~~~~f~~~v~-~--~~~~~v~f~a~----wC~~C~~~~p~~~~~a~~~~------~~~~~~~vd~~~~~~~~~~ 67 (101)
T cd03003 1 PEIVTLDRGDFDAAVN-S--GEIWFVNFYSP----RCSHCHDLAPTWREFAKEMD------GVIRIGAVNCGDDRMLCRS 67 (101)
T ss_pred CCeEEcCHhhHHHHhc-C--CCeEEEEEECC----CChHHHHhHHHHHHHHHHhc------CceEEEEEeCCccHHHHHH
Confidence 3589999999999874 3 35799999999 99999999999999999885 4699999999999999999
Q ss_pred CCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHH
Q psy8429 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKW 164 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~f 164 (314)
++++++||+++|+.| +.. ..| .|.++.+.|.+|
T Consensus 68 ~~v~~~Pt~~~~~~g-~~~--~~~---~G~~~~~~l~~f 100 (101)
T cd03003 68 QGVNSYPSLYVFPSG-MNP--EKY---YGDRSKESLVKF 100 (101)
T ss_pred cCCCccCEEEEEcCC-CCc--ccC---CCCCCHHHHHhh
Confidence 999999999999876 321 222 577888988887
No 10
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.76 E-value=5.3e-17 Score=146.05 Aligned_cols=113 Identities=12% Similarity=0.209 Sum_probs=95.3
Q ss_pred CCCeEEeChhhHHHHHHcC--CCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcch
Q psy8429 45 KKAVLRFDGQKYKEYIKNG--PRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDV 122 (314)
Q Consensus 45 ~~~VI~Lt~~nf~~~v~~~--~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~l 122 (314)
+++|+++|++||++.+... ..+..++|.|||+ ||++|+++.|+|+++|+.+. +.+.|+++|+++++++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyAp----WC~~Ck~~~P~~e~la~~~~------~~v~~~~VD~~~~~~l 98 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAP----WCSHCRKMAPAWERLAKALK------GQVNVADLDATRALNL 98 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECC----CChHHHHHHHHHHHHHHHcC------CCeEEEEecCcccHHH
Confidence 4679999999999987432 1346789999999 99999999999999999985 4699999999999999
Q ss_pred HHhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCcc
Q psy8429 123 FQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI 173 (314)
Q Consensus 123 f~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~i 173 (314)
+++++|+++||+++|++| +. ++...|..+.+++.+|+.+......
T Consensus 99 ~~~~~I~~~PTl~~f~~G-~~-----v~~~~G~~s~e~L~~fi~~~~~~~~ 143 (224)
T PTZ00443 99 AKRFAIKGYPTLLLFDKG-KM-----YQYEGGDRSTEKLAAFALGDFKKAL 143 (224)
T ss_pred HHHcCCCcCCEEEEEECC-EE-----EEeeCCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999975 32 2333466899999999999876443
No 11
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.74 E-value=1.6e-17 Score=131.97 Aligned_cols=107 Identities=23% Similarity=0.338 Sum_probs=88.7
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC--CcchHH
Q psy8429 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE--GSDVFQ 124 (314)
Q Consensus 47 ~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~--~~~lf~ 124 (314)
+|+++|+++|++.+.+. +..++|.|+|+ ||++|+++.|+|+++|+.+. +.+.|+.+|+++ ++++++
T Consensus 1 ~v~~l~~~~~~~~i~~~--~~~~lv~f~a~----wC~~C~~~~~~~~~~a~~~~------~~~~~~~v~~~~~~~~~~~~ 68 (109)
T cd03002 1 PVYELTPKNFDKVVHNT--NYTTLVEFYAP----WCGHCKNLKPEYAKAAKELD------GLVQVAAVDCDEDKNKPLCG 68 (109)
T ss_pred CeEEcchhhHHHHHhcC--CCeEEEEEECC----CCHHHHhhChHHHHHHHHhc------CCceEEEEecCccccHHHHH
Confidence 47899999999998643 45699999999 99999999999999999885 468899999999 889999
Q ss_pred hCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHH
Q psy8429 125 MLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIA 166 (314)
Q Consensus 125 ~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~ 166 (314)
+++++++|++++|+++++........+ .|+.+.+++.+||.
T Consensus 69 ~~~i~~~Pt~~~~~~~~~~~~~~~~~~-~G~~~~~~l~~fi~ 109 (109)
T cd03002 69 KYGVQGFPTLKVFRPPKKASKHAVEDY-NGERSAKAIVDFVL 109 (109)
T ss_pred HcCCCcCCEEEEEeCCCcccccccccc-cCccCHHHHHHHhC
Confidence 999999999999999752111111222 57889999999983
No 12
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.1e-17 Score=153.21 Aligned_cols=110 Identities=14% Similarity=0.245 Sum_probs=99.9
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (314)
.+|+++|+.||+..|....+.-+|+|+|||| ||++|+++.|..|+++.+|. +++.+++||+|++|.+..+
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap----~~~~c~qL~p~Lekla~~~~------G~f~LakvN~D~~p~vAaq 92 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAP----WCGPCKQLTPTLEKLAAEYK------GKFKLAKVNCDAEPMVAAQ 92 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCC----CCchHHHHHHHHHHHHHHhC------CceEEEEecCCcchhHHHH
Confidence 4599999999999998888888999999999 99999999999999999997 7899999999999999999
Q ss_pred CCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCC
Q psy8429 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDI 171 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~ 171 (314)
|||+++||++.|+.| .+. +.+ .|..+.+++.+|+.++.+.
T Consensus 93 fgiqsIPtV~af~dG-qpV--dgF---~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 93 FGVQSIPTVYAFKDG-QPV--DGF---QGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred hCcCcCCeEEEeeCC-cCc--ccc---CCCCcHHHHHHHHHHhcCh
Confidence 999999999999997 432 222 4677888999999999987
No 13
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.73 E-value=3.4e-17 Score=128.74 Aligned_cols=101 Identities=14% Similarity=0.189 Sum_probs=85.5
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (314)
++|++||+++|++.+ ++ + ++|.|||+ ||++|+++.|.|+++|+.+. ..++.|+++|++++++++++
T Consensus 1 ~~v~~l~~~~f~~~~-~~--~--~lv~f~a~----wC~~C~~~~p~~~~l~~~~~-----~~~v~~~~vd~~~~~~~~~~ 66 (101)
T cd02994 1 SNVVELTDSNWTLVL-EG--E--WMIEFYAP----WCPACQQLQPEWEEFADWSD-----DLGINVAKVDVTQEPGLSGR 66 (101)
T ss_pred CceEEcChhhHHHHh-CC--C--EEEEEECC----CCHHHHHHhHHHHHHHHhhc-----cCCeEEEEEEccCCHhHHHH
Confidence 468999999999976 34 2 68999999 99999999999999998754 23699999999999999999
Q ss_pred CCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHh
Q psy8429 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~ 167 (314)
++++++||+++|++| +. ....|+.+.++|.+|+++
T Consensus 67 ~~i~~~Pt~~~~~~g-~~------~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 67 FFVTALPTIYHAKDG-VF------RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred cCCcccCEEEEeCCC-CE------EEecCCCCHHHHHHHHhC
Confidence 999999999999775 32 122578899999999864
No 14
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.71 E-value=6.4e-17 Score=126.75 Aligned_cols=102 Identities=16% Similarity=0.293 Sum_probs=85.6
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC
Q psy8429 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (314)
Q Consensus 47 ~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~ 126 (314)
+++++|+++|++.+.++ .+++.|||+ ||++|+++.|.++++|+++.. ...++.|+++|+++++++++++
T Consensus 1 ~~~~l~~~~f~~~~~~~----~~lv~f~a~----wC~~C~~~~p~~~~~~~~~~~---~~~~~~~~~vd~~~~~~~~~~~ 69 (102)
T cd03005 1 GVLELTEDNFDHHIAEG----NHFVKFFAP----WCGHCKRLAPTWEQLAKKFNN---ENPSVKIAKVDCTQHRELCSEF 69 (102)
T ss_pred CeeECCHHHHHHHhhcC----CEEEEEECC----CCHHHHHhCHHHHHHHHHHhc---cCCcEEEEEEECCCChhhHhhc
Confidence 57899999999998532 389999999 999999999999999999863 1236999999999999999999
Q ss_pred CcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 127 ~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
+++++||+++|++| +.. ....|..+.+++.+||
T Consensus 70 ~v~~~Pt~~~~~~g-~~~-----~~~~G~~~~~~l~~~i 102 (102)
T cd03005 70 QVRGYPTLLLFKDG-EKV-----DKYKGTRDLDSLKEFV 102 (102)
T ss_pred CCCcCCEEEEEeCC-Cee-----eEeeCCCCHHHHHhhC
Confidence 99999999999876 321 2225778899998875
No 15
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.71 E-value=1.1e-16 Score=125.73 Aligned_cols=101 Identities=23% Similarity=0.264 Sum_probs=86.7
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCC
Q psy8429 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (314)
Q Consensus 48 VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~ 127 (314)
|+++|+++|++.+.+. +..++++|+|+ ||++|+++.|.|+++|+.+. +++.|+.+|++++++++++++
T Consensus 2 v~~l~~~~~~~~i~~~--~~~vlv~f~a~----~C~~C~~~~~~~~~~~~~~~------~~~~~~~id~~~~~~~~~~~~ 69 (103)
T cd03001 2 VVELTDSNFDKKVLNS--DDVWLVEFYAP----WCGHCKNLAPEWKKAAKALK------GIVKVGAVDADVHQSLAQQYG 69 (103)
T ss_pred eEEcCHHhHHHHHhcC--CCcEEEEEECC----CCHHHHHHhHHHHHHHHHhc------CCceEEEEECcchHHHHHHCC
Confidence 7899999999997533 34689999999 99999999999999999885 469999999999999999999
Q ss_pred cccCceEEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 128 LNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 128 v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
++++|++++|+++ +.. .+++ .|+.+.+++.+|+
T Consensus 70 i~~~P~~~~~~~~-~~~---~~~~-~g~~~~~~l~~~~ 102 (103)
T cd03001 70 VRGFPTIKVFGAG-KNS---PQDY-QGGRTAKAIVSAA 102 (103)
T ss_pred CCccCEEEEECCC-Ccc---eeec-CCCCCHHHHHHHh
Confidence 9999999999986 221 2233 4789999999997
No 16
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.70 E-value=9e-17 Score=130.02 Aligned_cols=103 Identities=12% Similarity=0.175 Sum_probs=80.9
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEee--CCCCCCCc---cchhhHHHHHHHHHHhccccCCCCcEEEEEEECC---
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTA--LAPQRNCH---ICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD--- 117 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA--~~~~~~C~---~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~--- 117 (314)
.|+++||++||++.|. + +..++|.|+| | ||+ +|+++.|+|++.| +.+.+++||++
T Consensus 1 ~g~v~L~~~nF~~~v~-~--~~~vlV~F~A~~P----wc~k~~~~~~LA~e~~~aa----------~~v~lakVd~~d~~ 63 (116)
T cd03007 1 KGCVDLDTVTFYKVIP-K--FKYSLVKFDTAYP----YGEKHEAFTRLAESSASAT----------DDLLVAEVGIKDYG 63 (116)
T ss_pred CCeeECChhhHHHHHh-c--CCcEEEEEeCCCC----CCCChHHHHHHHHHHHhhc----------CceEEEEEeccccc
Confidence 4789999999999884 3 3459999999 8 888 6666666665544 24999999994
Q ss_pred --CCcchHHhCCcc--cCceEEEecCCCCCCCCCccceeecc-cCHHHHHHHHHhhc
Q psy8429 118 --EGSDVFQMLRLN--TAPIFMHFPAKGKPKPSDTLDIQRVG-YSAEAIVKWIADRT 169 (314)
Q Consensus 118 --~~~~lf~~~~v~--svPtl~~f~p~~~~~~~~~~~~~~~~-~~a~~l~~fI~~~~ 169 (314)
++++++++|+|+ ++||+.+|+.|.. .+...| .|+ ++++.|.+||++++
T Consensus 64 ~~~~~~L~~~y~I~~~gyPTl~lF~~g~~-~~~~~Y---~G~~r~~~~lv~~v~~~~ 116 (116)
T cd03007 64 EKLNMELGERYKLDKESYPVIYLFHGGDF-ENPVPY---SGADVTVDALQRFLKGNT 116 (116)
T ss_pred chhhHHHHHHhCCCcCCCCEEEEEeCCCc-CCCccC---CCCcccHHHHHHHHHhcC
Confidence 578999999999 9999999998631 112334 465 99999999999874
No 17
>PRK09381 trxA thioredoxin; Provisional
Probab=99.70 E-value=2.3e-16 Score=125.76 Aligned_cols=107 Identities=11% Similarity=0.216 Sum_probs=91.5
Q ss_pred CCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHH
Q psy8429 45 KKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQ 124 (314)
Q Consensus 45 ~~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~ 124 (314)
+++|+++++++|++.+.+. +..+++.||++ ||++|+.+.|.++++++.+. +++.|+.+|+++++++++
T Consensus 2 ~~~v~~~~~~~~~~~v~~~--~~~vvv~f~~~----~C~~C~~~~p~~~~l~~~~~------~~~~~~~vd~~~~~~~~~ 69 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKA--DGAILVDFWAE----WCGPCKMIAPILDEIADEYQ------GKLTVAKLNIDQNPGTAP 69 (109)
T ss_pred CCcceeeChhhHHHHHhcC--CCeEEEEEECC----CCHHHHHHhHHHHHHHHHhC------CCcEEEEEECCCChhHHH
Confidence 4679999999999887643 55799999999 99999999999999999985 469999999999999999
Q ss_pred hCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhc
Q psy8429 125 MLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (314)
Q Consensus 125 ~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~ 169 (314)
+++++++|++++|++| +. .....|..+.+++.+|+.+++
T Consensus 70 ~~~v~~~Pt~~~~~~G-~~-----~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 70 KYGIRGIPTLLLFKNG-EV-----AATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred hCCCCcCCEEEEEeCC-eE-----EEEecCCCCHHHHHHHHHHhc
Confidence 9999999999999875 32 122246678999999998875
No 18
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.68 E-value=2.2e-16 Score=126.38 Aligned_cols=105 Identities=17% Similarity=0.336 Sum_probs=86.7
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC-CcchHH-
Q psy8429 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE-GSDVFQ- 124 (314)
Q Consensus 47 ~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~-~~~lf~- 124 (314)
.|++++.++|++++.+..++..++|.|+|+ ||++|+++.|+|+++|+.+.. +++.|+++|++. +.++++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~----wC~~C~~~~~~~~~la~~~~~-----~~~~~~~vd~d~~~~~~~~~ 72 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAP----WCPFCQAMEASYEELAEKLAG-----SNVKVAKFNADGEQREFAKE 72 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECC----CCHHHHHHhHHHHHHHHHhcc-----CCeEEEEEECCccchhhHHh
Confidence 488999999999986455677899999999 999999999999999998862 359999999998 577776
Q ss_pred hCCcccCceEEEecCCCCCCCCCccceeec-ccCHHHHHHHH
Q psy8429 125 MLRLNTAPIFMHFPAKGKPKPSDTLDIQRV-GYSAEAIVKWI 165 (314)
Q Consensus 125 ~~~v~svPtl~~f~p~~~~~~~~~~~~~~~-~~~a~~l~~fI 165 (314)
.++++++||+++|+++++. .+.+ .+ .++++.|.+||
T Consensus 73 ~~~v~~~Pti~~f~~~~~~----~~~y-~g~~~~~~~l~~f~ 109 (109)
T cd02993 73 ELQLKSFPTILFFPKNSRQ----PIKY-PSEQRDVDSLLMFV 109 (109)
T ss_pred hcCCCcCCEEEEEcCCCCC----ceec-cCCCCCHHHHHhhC
Confidence 5999999999999987432 1233 34 47999999885
No 19
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.68 E-value=5e-16 Score=125.32 Aligned_cols=104 Identities=19% Similarity=0.229 Sum_probs=79.9
Q ss_pred hhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCc
Q psy8429 53 GQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAP 132 (314)
Q Consensus 53 ~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svP 132 (314)
.++|++.+.+ ..+..++|.|+|+ ||+||+.+.|.++++|+.+. +.+.|++||+|+++++.++++|+++|
T Consensus 2 ~~~~~~~i~~-~~~~~vVV~F~A~----WCgpCk~m~P~le~la~~~~------~~v~f~kVDvD~~~~la~~~~V~~iP 70 (114)
T cd02954 2 GWAVDQAILS-EEEKVVVIRFGRD----WDPVCMQMDEVLAKIAEDVS------NFAVIYLVDIDEVPDFNKMYELYDPP 70 (114)
T ss_pred HHHHHHHHhc-cCCCEEEEEEECC----CChhHHHHHHHHHHHHHHcc------CceEEEEEECCCCHHHHHHcCCCCCC
Confidence 4678888753 2356799999999 99999999999999999885 56899999999999999999999999
Q ss_pred eEEEecCCCCC----CCCCccceeecccCHHHHHHHHHh
Q psy8429 133 IFMHFPAKGKP----KPSDTLDIQRVGYSAEAIVKWIAD 167 (314)
Q Consensus 133 tl~~f~p~~~~----~~~~~~~~~~~~~~a~~l~~fI~~ 167 (314)
|+++|+.|... ...+...+.....+.+.+++-++.
T Consensus 71 Tf~~fk~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02954 71 TVMFFFRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIET 109 (114)
T ss_pred EEEEEECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHH
Confidence 99999987211 011222232234456777766543
No 20
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.66 E-value=7.5e-16 Score=120.88 Aligned_cols=104 Identities=21% Similarity=0.381 Sum_probs=87.1
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC-CcchHHh
Q psy8429 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE-GSDVFQM 125 (314)
Q Consensus 47 ~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~-~~~lf~~ 125 (314)
+|+++|+++|++.+. .+ +..++++|||+ ||++|+++.|.|+.+++.+.. .+++.|+++|+++ +++++++
T Consensus 1 ~~~~l~~~~~~~~~~-~~-~~~~~v~f~a~----~C~~C~~~~~~~~~~~~~~~~----~~~~~~~~id~~~~~~~~~~~ 70 (105)
T cd02998 1 NVVELTDSNFDKVVG-DD-KKDVLVEFYAP----WCGHCKNLAPEYEKLAAVFAN----EDDVVIAKVDADEANKDLAKK 70 (105)
T ss_pred CeEEcchhcHHHHhc-CC-CCcEEEEEECC----CCHHHHhhChHHHHHHHHhCC----CCCEEEEEEECCCcchhhHHh
Confidence 368999999999864 33 34689999999 999999999999999999852 2569999999999 9999999
Q ss_pred CCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
++++++|++++|+++++. ...+ .|+.+.+++.+|+
T Consensus 71 ~~i~~~P~~~~~~~~~~~----~~~~-~g~~~~~~l~~~i 105 (105)
T cd02998 71 YGVSGFPTLKFFPKGSTE----PVKY-EGGRDLEDLVKFV 105 (105)
T ss_pred CCCCCcCEEEEEeCCCCC----cccc-CCccCHHHHHhhC
Confidence 999999999999987432 1222 5778999999885
No 21
>PRK10996 thioredoxin 2; Provisional
Probab=99.64 E-value=1.8e-15 Score=126.61 Aligned_cols=105 Identities=16% Similarity=0.321 Sum_probs=89.7
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (314)
..++++++++|++.+. . +..++|.|||+ ||++|+++.|.|+++++.+. +++.|+++|.+++++++++
T Consensus 35 ~~~i~~~~~~~~~~i~-~--~k~vvv~F~a~----wC~~C~~~~~~l~~l~~~~~------~~v~~~~vd~~~~~~l~~~ 101 (139)
T PRK10996 35 GEVINATGETLDKLLQ-D--DLPVVIDFWAP----WCGPCRNFAPIFEDVAAERS------GKVRFVKVNTEAERELSAR 101 (139)
T ss_pred CCCEEcCHHHHHHHHh-C--CCeEEEEEECC----CCHHHHHHHHHHHHHHHHhC------CCeEEEEEeCCCCHHHHHh
Confidence 3488899999999863 3 56799999999 99999999999999999875 4699999999999999999
Q ss_pred CCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhc
Q psy8429 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~ 169 (314)
++|+++|++++|++| +. .+...|..+.+++.+|+++.+
T Consensus 102 ~~V~~~Ptlii~~~G-~~-----v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 102 FRIRSIPTIMIFKNG-QV-----VDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred cCCCccCEEEEEECC-EE-----EEEEcCCCCHHHHHHHHHHhC
Confidence 999999999999865 32 233346788999999998763
No 22
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.64 E-value=1.3e-15 Score=118.81 Aligned_cols=102 Identities=23% Similarity=0.417 Sum_probs=86.8
Q ss_pred eChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCccc
Q psy8429 51 FDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNT 130 (314)
Q Consensus 51 Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~s 130 (314)
||+++|++.+. ++..++++||++ ||++|+.+.|.++++|+.+.. .+++.|+++|+++++++++++++++
T Consensus 1 l~~~~~~~~~~---~~~~~~i~f~~~----~C~~c~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~i~~ 69 (102)
T TIGR01126 1 LTASNFDDIVL---SNKDVLVEFYAP----WCGHCKNLAPEYEKLAKELKG----DPDIVLAKVDATAEKDLASRFGVSG 69 (102)
T ss_pred CchhhHHHHhc---cCCcEEEEEECC----CCHHHHhhChHHHHHHHHhcc----CCceEEEEEEccchHHHHHhCCCCc
Confidence 67899999974 356799999999 999999999999999998863 1269999999999999999999999
Q ss_pred CceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhc
Q psy8429 131 APIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (314)
Q Consensus 131 vPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~ 169 (314)
+|++++|++++.. +.+ .|..+.++|.+|+.+++
T Consensus 70 ~P~~~~~~~~~~~-----~~~-~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 70 FPTIKFFPKGKKP-----VDY-EGGRDLEAIVEFVNEKS 102 (102)
T ss_pred CCEEEEecCCCcc-----eee-cCCCCHHHHHHHHHhcC
Confidence 9999999987431 222 46788999999998863
No 23
>KOG0190|consensus
Probab=99.64 E-value=6.2e-16 Score=151.54 Aligned_cols=114 Identities=24% Similarity=0.341 Sum_probs=99.0
Q ss_pred hCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchH
Q psy8429 44 AKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVF 123 (314)
Q Consensus 44 ~~~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf 123 (314)
.+..|++||.+||++.+. + +-.++|.|||| ||+||+.+.|+|++.|...... +..+..++||++++.+++
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~-~--~~~vlVeFYAP----WCghck~LaPey~kAA~~Lke~---~s~i~LakVDat~~~~~~ 92 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETIN-G--HEFVLVEFYAP----WCGHCKALAPEYEKAATELKEE---GSPVKLAKVDATEESDLA 92 (493)
T ss_pred cccceEEEecccHHHHhc-c--CceEEEEEEch----hhhhhhhhCcHHHHHHHHhhcc---CCCceeEEeecchhhhhH
Confidence 356799999999999984 4 44689999999 9999999999999999998742 347999999999999999
Q ss_pred HhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCcc
Q psy8429 124 QMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI 173 (314)
Q Consensus 124 ~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~i 173 (314)
.+|+|+++||+.+|++|.. ...| .|+++++.+++|+++++|...
T Consensus 93 ~~y~v~gyPTlkiFrnG~~---~~~Y---~G~r~adgIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 93 SKYEVRGYPTLKIFRNGRS---AQDY---NGPREADGIVKWLKKQSGPAS 136 (493)
T ss_pred hhhcCCCCCeEEEEecCCc---ceec---cCcccHHHHHHHHHhccCCCc
Confidence 9999999999999999732 1234 589999999999999999764
No 24
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.64 E-value=1.2e-15 Score=122.68 Aligned_cols=104 Identities=10% Similarity=0.142 Sum_probs=85.8
Q ss_pred EEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCc
Q psy8429 49 LRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRL 128 (314)
Q Consensus 49 I~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v 128 (314)
..+|.++|++.+.....+-+++|.|||+ ||++|+.+.|+++++++.+.. .++.|+++|++++++++++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~----wC~~C~~~~p~~~~l~~~~~~-----~~v~~~~vd~d~~~~l~~~~~V 77 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSD----WCFSCIHIEPVWKEVIQELEP-----LGVGIATVNAGHERRLARKLGA 77 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECC----ccHhHHHhhHHHHHHHHHHHh-----cCceEEEEeccccHHHHHHcCC
Confidence 3568889987665433456799999999 999999999999999999862 3599999999999999999999
Q ss_pred ccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHh
Q psy8429 129 NTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (314)
Q Consensus 129 ~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~ 167 (314)
+++||+++|+.| +. .....|..+.+.+.+||.+
T Consensus 78 ~~~Pt~~i~~~g-~~-----~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 78 HSVPAIVGIING-QV-----TFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ccCCEEEEEECC-EE-----EEEecCCCCHHHHHHHHhc
Confidence 999999999875 32 2222466789999999976
No 25
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.63 E-value=3e-15 Score=117.33 Aligned_cols=104 Identities=20% Similarity=0.351 Sum_probs=85.1
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC
Q psy8429 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (314)
Q Consensus 47 ~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~ 126 (314)
+|.+||+++|++.+.+. +..++|+|+|+ ||++|+.+.|+++++|+.+.. ..++.|+++|++++ ++...+
T Consensus 1 ~v~~l~~~~f~~~i~~~--~~~~~v~f~~~----~C~~C~~~~~~~~~~~~~~~~----~~~~~~~~id~~~~-~~~~~~ 69 (104)
T cd02995 1 PVKVVVGKNFDEVVLDS--DKDVLVEFYAP----WCGHCKALAPIYEELAEKLKG----DDNVVIAKMDATAN-DVPSEF 69 (104)
T ss_pred CeEEEchhhhHHHHhCC--CCcEEEEEECC----CCHHHHHHhhHHHHHHHHhcC----CCCEEEEEEeCcch-hhhhhc
Confidence 47899999999987533 35689999999 999999999999999998752 24699999999987 578899
Q ss_pred CcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 127 ~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
+++++|++++|++|++. +. ... .|..+.+++.+||
T Consensus 70 ~~~~~Pt~~~~~~~~~~-~~--~~~-~g~~~~~~l~~fi 104 (104)
T cd02995 70 VVDGFPTILFFPAGDKS-NP--IKY-EGDRTLEDLIKFI 104 (104)
T ss_pred cCCCCCEEEEEcCCCcC-Cc--eEc-cCCcCHHHHHhhC
Confidence 99999999999987421 11 222 5778899999885
No 26
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.62 E-value=2.6e-15 Score=120.45 Aligned_cols=101 Identities=6% Similarity=0.111 Sum_probs=83.4
Q ss_pred hhhCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCC--CccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC
Q psy8429 42 MNAKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRN--CHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG 119 (314)
Q Consensus 42 l~~~~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~--C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~ 119 (314)
+++..+.-++|.+||++.+. . +..++++|+|+ | |++|++++|.++++|+.|. +.+.|+++|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~f~~~----~~~cp~c~~i~P~leela~e~~------~~v~f~kVdid~~ 72 (111)
T cd02965 6 LQTRHGWPRVDAATLDDWLA-A--GGDLVLLLAGD----PVRFPEVLDVAVVLPELLKAFP------GRFRAAVVGRADE 72 (111)
T ss_pred HHHhcCCcccccccHHHHHh-C--CCCEEEEecCC----cccCcchhhhHhHHHHHHHHCC------CcEEEEEEECCCC
Confidence 44556778999999999873 3 45689999999 8 9999999999999999985 5699999999999
Q ss_pred cchHHhCCcccCceEEEecCCCCCCCCCccceeecccCHHHH
Q psy8429 120 SDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAI 161 (314)
Q Consensus 120 ~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l 161 (314)
+++..+|+|+++||+++|+.| +. .+...|..+.+++
T Consensus 73 ~~la~~f~V~sIPTli~fkdG-k~-----v~~~~G~~~~~e~ 108 (111)
T cd02965 73 QALAARFGVLRTPALLFFRDG-RY-----VGVLAGIRDWDEY 108 (111)
T ss_pred HHHHHHcCCCcCCEEEEEECC-EE-----EEEEeCccCHHHH
Confidence 999999999999999999987 32 2222455555554
No 27
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.62 E-value=2.7e-15 Score=116.68 Aligned_cols=95 Identities=15% Similarity=0.229 Sum_probs=80.2
Q ss_pred hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCce
Q psy8429 54 QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPI 133 (314)
Q Consensus 54 ~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPt 133 (314)
++|++.+. .+++..++|.|||+ ||++|+.+.|.++++++.+. +.+.|+++|++++++++++++++++|+
T Consensus 1 ~~f~~~i~-~~~~~~vlv~f~a~----wC~~C~~~~~~~~~~~~~~~------~~~~~~~vd~~~~~~l~~~~~i~~~Pt 69 (96)
T cd02956 1 QNFQQVLQ-ESTQVPVVVDFWAP----RSPPSKELLPLLERLAEEYQ------GQFVLAKVNCDAQPQIAQQFGVQALPT 69 (96)
T ss_pred CChHHHHH-hcCCCeEEEEEECC----CChHHHHHHHHHHHHHHHhC------CcEEEEEEeccCCHHHHHHcCCCCCCE
Confidence 46888875 34567899999999 99999999999999999885 469999999999999999999999999
Q ss_pred EEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 134 FMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 134 l~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
+++|+.| +. .+...|..+.+++.+||
T Consensus 70 ~~~~~~g-~~-----~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 70 VYLFAAG-QP-----VDGFQGAQPEEQLRQML 95 (96)
T ss_pred EEEEeCC-EE-----eeeecCCCCHHHHHHHh
Confidence 9999865 32 12224677899999987
No 28
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.61 E-value=2.2e-15 Score=121.48 Aligned_cols=83 Identities=11% Similarity=0.249 Sum_probs=74.8
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (314)
..+.++|+++|++.+.+.+.+..++|.|||+ ||++|+.+.|.++++|+.+. ++.|+++|++++ +++++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~----~c~~C~~l~~~l~~la~~~~-------~v~f~~vd~~~~-~l~~~ 71 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEP----GFPRCKILDSHLEELAAKYP-------ETKFVKINAEKA-FLVNY 71 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCC----CCCcHHHHHHHHHHHHHHCC-------CcEEEEEEchhh-HHHHh
Confidence 3488999999999986554457899999999 99999999999999999874 488999999999 99999
Q ss_pred CCcccCceEEEecCC
Q psy8429 126 LRLNTAPIFMHFPAK 140 (314)
Q Consensus 126 ~~v~svPtl~~f~p~ 140 (314)
++|+++||+++|+.|
T Consensus 72 ~~i~~~Pt~~~f~~G 86 (113)
T cd02957 72 LDIKVLPTLLVYKNG 86 (113)
T ss_pred cCCCcCCEEEEEECC
Confidence 999999999999987
No 29
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.61 E-value=4.8e-15 Score=125.87 Aligned_cols=85 Identities=18% Similarity=0.282 Sum_probs=75.8
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (314)
..+.++|+++|++.+.+ .++..++|.|||+ ||++|+++.|.++++|+.+.. +++.|+++|+++++++.++
T Consensus 28 ~~v~~l~~~~f~~~l~~-~~~~~vvV~Fya~----wC~~Ck~l~p~l~~la~~~~~-----~~v~f~~VDvd~~~~la~~ 97 (152)
T cd02962 28 EHIKYFTPKTLEEELER-DKRVTWLVEFFTT----WSPECVNFAPVFAELSLKYNN-----NNLKFGKIDIGRFPNVAEK 97 (152)
T ss_pred CccEEcCHHHHHHHHHh-cCCCEEEEEEECC----CCHHHHHHHHHHHHHHHHccc-----CCeEEEEEECCCCHHHHHH
Confidence 46889999999998743 3456799999999 999999999999999998852 3599999999999999999
Q ss_pred CCccc------CceEEEecCC
Q psy8429 126 LRLNT------APIFMHFPAK 140 (314)
Q Consensus 126 ~~v~s------vPtl~~f~p~ 140 (314)
++|++ +||+++|+.|
T Consensus 98 ~~V~~~~~v~~~PT~ilf~~G 118 (152)
T cd02962 98 FRVSTSPLSKQLPTIILFQGG 118 (152)
T ss_pred cCceecCCcCCCCEEEEEECC
Confidence 99998 9999999986
No 30
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.61 E-value=5.9e-15 Score=115.83 Aligned_cols=101 Identities=21% Similarity=0.355 Sum_probs=84.8
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC--CcchHHh
Q psy8429 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE--GSDVFQM 125 (314)
Q Consensus 48 VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~--~~~lf~~ 125 (314)
|+++++++|++.+. ..+ .++|.|+|+ ||++|+.+.|.++++++.+.. .+.+.|+++|+++ +++++++
T Consensus 2 ~~~l~~~~~~~~~~-~~~--~~~v~f~a~----wC~~C~~~~~~~~~~~~~~~~----~~~~~~~~id~~~~~~~~~~~~ 70 (104)
T cd02997 2 VVHLTDEDFRKFLK-KEK--HVLVMFYAP----WCGHCKKMKPEFTKAATELKE----DGKGVLAAVDCTKPEHDALKEE 70 (104)
T ss_pred eEEechHhHHHHHh-hCC--CEEEEEECC----CCHHHHHhCHHHHHHHHHHhh----CCceEEEEEECCCCccHHHHHh
Confidence 78999999999875 332 689999999 999999999999999988753 2458999999999 9999999
Q ss_pred CCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
++++++|++++|++| +.. ....|..+++++.+|+
T Consensus 71 ~~i~~~Pt~~~~~~g-~~~-----~~~~g~~~~~~l~~~l 104 (104)
T cd02997 71 YNVKGFPTFKYFENG-KFV-----EKYEGERTAEDIIEFM 104 (104)
T ss_pred CCCccccEEEEEeCC-Cee-----EEeCCCCCHHHHHhhC
Confidence 999999999999976 321 2225778899999885
No 31
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.61 E-value=4.7e-15 Score=114.40 Aligned_cols=101 Identities=21% Similarity=0.364 Sum_probs=84.0
Q ss_pred EEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCc
Q psy8429 49 LRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRL 128 (314)
Q Consensus 49 I~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v 128 (314)
+++|+++|++.+. +++ +++++|+++ ||++|+.+.|.++++|+.+.. .+++.|+.+|+++++++++++++
T Consensus 1 ~~l~~~~~~~~i~-~~~--~~~v~f~~~----~C~~C~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~i 69 (101)
T cd02961 1 VELTDDNFDELVK-DSK--DVLVEFYAP----WCGHCKALAPEYEKLAKELKG----DGKVVVAKVDCTANNDLCSEYGV 69 (101)
T ss_pred CcccHHHHHHHHh-CCC--cEEEEEECC----CCHHHHhhhHHHHHHHHHhcc----CCceEEEEeeccchHHHHHhCCC
Confidence 4689999999985 333 789999999 999999999999999999841 25799999999999999999999
Q ss_pred ccCceEEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 129 NTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 129 ~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
+++|++++|++++.. ...+ .++.+++.+.+|+
T Consensus 70 ~~~Pt~~~~~~~~~~--~~~~---~g~~~~~~i~~~~ 101 (101)
T cd02961 70 RGYPTIKLFPNGSKE--PVKY---EGPRTLESLVEFI 101 (101)
T ss_pred CCCCEEEEEcCCCcc--cccC---CCCcCHHHHHhhC
Confidence 999999999987321 1222 4667899998875
No 32
>PLN02309 5'-adenylylsulfate reductase
Probab=99.60 E-value=4e-15 Score=146.19 Aligned_cols=114 Identities=13% Similarity=0.232 Sum_probs=94.3
Q ss_pred hhhCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECC-CCc
Q psy8429 42 MNAKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD-EGS 120 (314)
Q Consensus 42 l~~~~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~-~~~ 120 (314)
+-++..|++|+++||++++...+++..++|+|||+ ||++|+.+.|+|+++|+.+.. .++.|+++|++ +++
T Consensus 341 l~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyAp----WC~~Cq~m~p~~e~LA~~~~~-----~~V~f~kVD~d~~~~ 411 (457)
T PLN02309 341 IFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAP----WCPFCQAMEASYEELAEKLAG-----SGVKVAKFRADGDQK 411 (457)
T ss_pred ccCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECC----CChHHHHHHHHHHHHHHHhcc-----CCeEEEEEECCCcch
Confidence 33456799999999999985456678899999999 999999999999999999852 35999999999 778
Q ss_pred chHH-hCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhh
Q psy8429 121 DVFQ-MLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 121 ~lf~-~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~ 168 (314)
++++ +++|+++||+++|++|.+. ...| ..+.++++.|.+||++.
T Consensus 412 ~la~~~~~I~~~PTil~f~~g~~~--~v~Y--~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 412 EFAKQELQLGSFPTILLFPKNSSR--PIKY--PSEKRDVDSLLSFVNSL 456 (457)
T ss_pred HHHHhhCCCceeeEEEEEeCCCCC--eeec--CCCCcCHHHHHHHHHHh
Confidence 8886 6999999999999987321 1223 23578999999999864
No 33
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.60 E-value=4.5e-15 Score=117.28 Aligned_cols=92 Identities=10% Similarity=0.141 Sum_probs=76.5
Q ss_pred hHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECC-CCcchHHhCCcccCce
Q psy8429 55 KYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD-EGSDVFQMLRLNTAPI 133 (314)
Q Consensus 55 nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~-~~~~lf~~~~v~svPt 133 (314)
++-+++. ..++..++|.|||+ ||++|+++.|+|+++|+.+. ++.|+++|.+ ++++++++++|+++||
T Consensus 8 ~~~~~~~-~~~g~~vlV~F~a~----WC~~C~~~~p~l~~la~~~~-------~~~~~~vd~~~~~~~l~~~~~V~~~PT 75 (100)
T cd02999 8 IALDLMA-FNREDYTAVLFYAS----WCPFSASFRPHFNALSSMFP-------QIRHLAIEESSIKPSLLSRYGVVGFPT 75 (100)
T ss_pred HHHHHHH-hcCCCEEEEEEECC----CCHHHHhHhHHHHHHHHHhc-------cCceEEEECCCCCHHHHHhcCCeecCE
Confidence 3445543 44677899999999 99999999999999999874 3789999999 7899999999999999
Q ss_pred EEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 134 FMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 134 l~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
+++|++| .. . . ..|.++.+++.+|+
T Consensus 76 ~~lf~~g-~~---~--~-~~G~~~~~~l~~f~ 100 (100)
T cd02999 76 ILLFNST-PR---V--R-YNGTRTLDSLAAFY 100 (100)
T ss_pred EEEEcCC-ce---e--E-ecCCCCHHHHHhhC
Confidence 9999976 32 1 2 25778999999885
No 34
>PHA02278 thioredoxin-like protein
Probab=99.59 E-value=8.3e-15 Score=116.54 Aligned_cols=93 Identities=13% Similarity=0.194 Sum_probs=74.8
Q ss_pred hhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC----cchHHhCCc
Q psy8429 53 GQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG----SDVFQMLRL 128 (314)
Q Consensus 53 ~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~----~~lf~~~~v 128 (314)
-++|++.+. . +..++|+|||+ ||+||+.+.|.++++|+.+. .++.|+++|++++ +++.++++|
T Consensus 4 ~~~~~~~i~-~--~~~vvV~F~A~----WCgpCk~m~p~l~~l~~~~~------~~~~~~~vdvd~~~~d~~~l~~~~~I 70 (103)
T PHA02278 4 LVDLNTAIR-Q--KKDVIVMITQD----NCGKCEILKSVIPMFQESGD------IKKPILTLNLDAEDVDREKAVKLFDI 70 (103)
T ss_pred HHHHHHHHh-C--CCcEEEEEECC----CCHHHHhHHHHHHHHHhhhc------CCceEEEEECCccccccHHHHHHCCC
Confidence 367888873 3 45699999999 99999999999999998753 3467899999986 689999999
Q ss_pred ccCceEEEecCCCCCCCCCccceeecccCHHHHHHH
Q psy8429 129 NTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKW 164 (314)
Q Consensus 129 ~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~f 164 (314)
+++||+++|+.| +. .+...|..+++++.++
T Consensus 71 ~~iPT~i~fk~G-~~-----v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 71 MSTPVLIGYKDG-QL-----VKKYEDQVTPMQLQEL 100 (103)
T ss_pred ccccEEEEEECC-EE-----EEEEeCCCCHHHHHhh
Confidence 999999999986 32 2333455777887765
No 35
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.59 E-value=1.9e-14 Score=116.44 Aligned_cols=87 Identities=16% Similarity=0.241 Sum_probs=75.0
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC--CcchH
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE--GSDVF 123 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~--~~~lf 123 (314)
++++++++++|++.+.++ +.+++|.|||+ ||++|+.+.|.|+++|+.+... .+.+.|+++|++. +++++
T Consensus 1 ~~v~~l~~~~f~~~i~~~--~~~vvV~f~a~----wC~~C~~~~~~~~~la~~~~~~---~~~v~~~~vd~~~~~~~~~~ 71 (114)
T cd02992 1 DPVIVLDAASFNSALLGS--PSAWLVEFYAS----WCGHCRAFAPTWKKLARDLRKW---RPVVRVAAVDCADEENVALC 71 (114)
T ss_pred CCeEECCHHhHHHHHhcC--CCeEEEEEECC----CCHHHHHHhHHHHHHHHHHHhc---CCceEEEEEeccchhhHHHH
Confidence 468999999999998643 35799999999 9999999999999999988521 2469999999864 78899
Q ss_pred HhCCcccCceEEEecCCC
Q psy8429 124 QMLRLNTAPIFMHFPAKG 141 (314)
Q Consensus 124 ~~~~v~svPtl~~f~p~~ 141 (314)
++++++++||+++|+++.
T Consensus 72 ~~~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 72 RDFGVTGYPTLRYFPPFS 89 (114)
T ss_pred HhCCCCCCCEEEEECCCC
Confidence 999999999999999974
No 36
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.58 E-value=1.5e-14 Score=125.68 Aligned_cols=123 Identities=9% Similarity=0.153 Sum_probs=92.4
Q ss_pred HHHHHHHhhhhC----CCeEEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCc
Q psy8429 34 DRVLHLSEMNAK----KAVLRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNK 108 (314)
Q Consensus 34 ~~~~~L~~l~~~----~~VI~Lt~-~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~ 108 (314)
.+++||.+.+.+ ..++++++ ++|.+.+.+.+.+..++|.|||+ ||++|+.+.|.++++|+.+. .
T Consensus 46 ~R~~el~~~~~~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~----wc~~Ck~m~~~l~~LA~~~~-------~ 114 (175)
T cd02987 46 QRMQEMHAKLPFGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEP----GIPGCAALNSSLLCLAAEYP-------A 114 (175)
T ss_pred HHHHHHHHhccccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECC----CCchHHHHHHHHHHHHHHCC-------C
Confidence 445555443222 34999999 99999986554456899999999 99999999999999999873 5
Q ss_pred EEEEEEECCCCcchHHhCCcccCceEEEecCCCCCCCCCcc-ceeecccCHHHHHHHHHhh
Q psy8429 109 LFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTL-DIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 109 v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p~~~~~~~~~~-~~~~~~~~a~~l~~fI~~~ 168 (314)
+.|++||++++ ++.++|+++++||+++|+.|......... +......+.+.|..++.++
T Consensus 115 vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 115 VKFCKIRASAT-GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred eEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 99999999998 99999999999999999987211100001 1111246789999888764
No 37
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.57 E-value=1.7e-14 Score=141.96 Aligned_cols=112 Identities=14% Similarity=0.223 Sum_probs=90.8
Q ss_pred hCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc-ch
Q psy8429 44 AKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS-DV 122 (314)
Q Consensus 44 ~~~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~-~l 122 (314)
.++.|++||++||++.+....++..++|.|||+ ||++|+.+.|+|+++|+.+.. ..+.|+++|+|.++ ++
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyAp----WC~~Ck~m~P~~eelA~~~~~-----~~v~~~kVdvD~~~~~~ 419 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAP----WCPFCQAMEASYLELAEKLAG-----SGVKVAKFRADGDQKEF 419 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECC----CChHHHHHHHHHHHHHHHhcc-----CCcEEEEEECCCCccHH
Confidence 456799999999999984345677899999999 999999999999999999862 24899999999864 44
Q ss_pred H-HhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhh
Q psy8429 123 F-QMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 123 f-~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~ 168 (314)
. ++++|+++||+++|+++... ...|+ .+.++++.|..||+..
T Consensus 420 ~~~~~~I~~~PTii~Fk~g~~~--~~~Y~--~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 420 AKQELQLGSFPTILFFPKHSSR--PIKYP--SEKRDVDSLMSFVNLL 462 (463)
T ss_pred HHHHcCCCccceEEEEECCCCC--ceeCC--CCCCCHHHHHHHHHhh
Confidence 4 78999999999999987321 12232 3569999999999753
No 38
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.56 E-value=3e-14 Score=112.97 Aligned_cols=97 Identities=12% Similarity=0.235 Sum_probs=78.9
Q ss_pred ChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc---chHHhCCc
Q psy8429 52 DGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS---DVFQMLRL 128 (314)
Q Consensus 52 t~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~---~lf~~~~v 128 (314)
|.++|++.+. ..++..++|.|+|+ ||++|+.+.|.++++|+.+. ++.|+++|.++++ +++++++|
T Consensus 2 ~~~~~~~~i~-~~~~k~vvv~F~a~----wC~~C~~~~p~l~~la~~~~-------~v~~~~vd~d~~~~~~~l~~~~~V 69 (103)
T cd02985 2 SVEELDEALK-KAKGRLVVLEFALK----HSGPSVKIYPTMVKLSRTCN-------DVVFLLVNGDENDSTMELCRREKI 69 (103)
T ss_pred CHHHHHHHHH-HcCCCEEEEEEECC----CCHhHHHHhHHHHHHHHHCC-------CCEEEEEECCCChHHHHHHHHcCC
Confidence 4678999885 34466899999999 99999999999999999872 5899999999974 89999999
Q ss_pred ccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHh
Q psy8429 129 NTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (314)
Q Consensus 129 ~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~ 167 (314)
+++||+++|++| +. .+. ..|..++++.+-+.+
T Consensus 70 ~~~Pt~~~~~~G-~~-----v~~-~~G~~~~~l~~~~~~ 101 (103)
T cd02985 70 IEVPHFLFYKDG-EK-----IHE-EEGIGPDELIGDVLY 101 (103)
T ss_pred CcCCEEEEEeCC-eE-----EEE-EeCCCHHHHHHHHHh
Confidence 999999999876 32 122 245677888777654
No 39
>PTZ00102 disulphide isomerase; Provisional
Probab=99.56 E-value=3.4e-14 Score=140.73 Aligned_cols=112 Identities=21% Similarity=0.345 Sum_probs=95.7
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (314)
+.++.+|+++|++.+.++ ..++|+|||+ ||++|+++.|+|+++|+.+... ..++.|+++|++++++++++
T Consensus 32 ~~v~~l~~~~f~~~i~~~---~~~lv~f~a~----wC~~Ck~~~p~~~~~a~~~~~~---~~~i~~~~vd~~~~~~l~~~ 101 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITEN---EIVLVKFYAP----WCGHCKRLAPEYKKAAKMLKEK---KSEIVLASVDATEEMELAQE 101 (477)
T ss_pred CCcEEcchhhHHHHHhcC---CcEEEEEECC----CCHHHHHhhHHHHHHHHHHHhc---CCcEEEEEEECCCCHHHHHh
Confidence 569999999999997533 3589999999 9999999999999999887531 24699999999999999999
Q ss_pred CCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCcce
Q psy8429 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQIR 174 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~i~ 174 (314)
++++++||+++|++|+. ... .|+++++++.+|+.+.++..+.
T Consensus 102 ~~i~~~Pt~~~~~~g~~------~~y-~g~~~~~~l~~~l~~~~~~~~~ 143 (477)
T PTZ00102 102 FGVRGYPTIKFFNKGNP------VNY-SGGRTADGIVSWIKKLTGPAVT 143 (477)
T ss_pred cCCCcccEEEEEECCce------EEe-cCCCCHHHHHHHHHHhhCCCce
Confidence 99999999999998732 122 5789999999999999987753
No 40
>KOG0907|consensus
Probab=99.56 E-value=2e-14 Score=114.86 Aligned_cols=85 Identities=24% Similarity=0.402 Sum_probs=72.3
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecCCCCCCC
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKP 145 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p~~~~~~ 145 (314)
+..++++|||+ ||+||+.+.|.|+++|+.|. + +.|.++|+|++++++++++++++||+.+|++|.+.
T Consensus 21 ~kliVvdF~a~----wCgPCk~i~P~~~~La~~y~------~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~-- 87 (106)
T KOG0907|consen 21 DKLVVVDFYAT----WCGPCKAIAPKFEKLAEKYP------D-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEV-- 87 (106)
T ss_pred CCeEEEEEECC----CCcchhhhhhHHHHHHHHCC------C-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEE--
Confidence 56799999999 99999999999999999985 4 99999999999999999999999999999987321
Q ss_pred CCccceeecccCHHHHHHHHHhh
Q psy8429 146 SDTLDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fI~~~ 168 (314)
+. ..|.+.+.+.+.++++
T Consensus 88 ----~~-~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 88 ----DE-VVGANKAELEKKIAKH 105 (106)
T ss_pred ----EE-EecCCHHHHHHHHHhc
Confidence 21 2456667777777654
No 41
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.55 E-value=4.7e-14 Score=109.54 Aligned_cols=101 Identities=19% Similarity=0.312 Sum_probs=83.8
Q ss_pred eChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCccc
Q psy8429 51 FDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNT 130 (314)
Q Consensus 51 Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~s 130 (314)
+|+++|++.+.+. +..++++|+++ ||++|+.+.|.++++++.+. +++.|+++|+++++++++++++++
T Consensus 1 i~~~~~~~~~~~~--~~~vvi~f~~~----~C~~C~~~~~~l~~~~~~~~------~~~~~~~vd~~~~~~~~~~~~v~~ 68 (101)
T TIGR01068 1 LTDANFDETIASS--DKPVLVDFWAP----WCGPCKMIAPILEELAKEYE------GKVKFVKLNVDENPDIAAKYGIRS 68 (101)
T ss_pred CCHHHHHHHHhhc--CCcEEEEEECC----CCHHHHHhCHHHHHHHHHhc------CCeEEEEEECCCCHHHHHHcCCCc
Confidence 4678899987532 45689999999 99999999999999998875 469999999999999999999999
Q ss_pred CceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhc
Q psy8429 131 APIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (314)
Q Consensus 131 vPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~ 169 (314)
+|++++|+.| +. .....|..+.+.+.+|+++++
T Consensus 69 ~P~~~~~~~g-~~-----~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 69 IPTLLLFKNG-KE-----VDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred CCEEEEEeCC-cE-----eeeecCCCCHHHHHHHHHhhC
Confidence 9999999765 32 122235678899999998763
No 42
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.55 E-value=5.1e-14 Score=113.12 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=79.6
Q ss_pred hhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCc
Q psy8429 53 GQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAP 132 (314)
Q Consensus 53 ~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svP 132 (314)
.+.|++.+++. .+..++|.|+|+ ||+||+.+.|.++++|+.+. +.+.|++||+|+++++.++|+|++.|
T Consensus 2 ~~~~d~~i~~~-~~klVVVdF~a~----WC~pCk~mdp~l~ela~~~~------~~~~f~kVDVDev~dva~~y~I~amP 70 (114)
T cd02986 2 KKEVDQAIKST-AEKVLVLRFGRD----EDAVCLQLDDILSKTSHDLS------KMASIYLVDVDKVPVYTQYFDISYIP 70 (114)
T ss_pred HHHHHHHHHhc-CCCEEEEEEeCC----CChhHHHHHHHHHHHHHHcc------CceEEEEEeccccHHHHHhcCceeCc
Confidence 35677877643 467899999999 99999999999999999985 34999999999999999999999999
Q ss_pred eEEEecCCCCC-----CCCCccceeecccCHHHHHHHHHh
Q psy8429 133 IFMHFPAKGKP-----KPSDTLDIQRVGYSAEAIVKWIAD 167 (314)
Q Consensus 133 tl~~f~p~~~~-----~~~~~~~~~~~~~~a~~l~~fI~~ 167 (314)
|+++|+.| ++ ...+...++-...+.+++++-++-
T Consensus 71 tfvffkng-kh~~~d~gt~~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 71 STIFFFNG-QHMKVDYGSPDHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred EEEEEECC-cEEEEecCCCCCcEEEEEcCchhHHHHHHHH
Confidence 99999987 32 011122222123456778776653
No 43
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.54 E-value=5e-14 Score=111.44 Aligned_cols=96 Identities=17% Similarity=0.282 Sum_probs=79.3
Q ss_pred ChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccC
Q psy8429 52 DGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTA 131 (314)
Q Consensus 52 t~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~sv 131 (314)
|.++|++.+. + +..++|.|||+ ||++|+.+.|+++++++.+.. +.+.|+++|.| ++++.++++++++
T Consensus 6 ~~~~~~~~i~-~--~~~vvv~F~a~----wC~~Ck~~~p~l~~~~~~~~~-----~~~~~~~vd~d-~~~~~~~~~v~~~ 72 (102)
T cd02948 6 NQEEWEELLS-N--KGLTVVDVYQE----WCGPCKAVVSLFKKIKNELGD-----DLLHFATAEAD-TIDTLKRYRGKCE 72 (102)
T ss_pred CHHHHHHHHc-c--CCeEEEEEECC----cCHhHHHHhHHHHHHHHHcCC-----CcEEEEEEeCC-CHHHHHHcCCCcC
Confidence 6789999863 3 45799999999 999999999999999998851 35889999999 7889999999999
Q ss_pred ceEEEecCCCCCCCCCccceeecccCHHHHHHHHHh
Q psy8429 132 PIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (314)
Q Consensus 132 Ptl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~ 167 (314)
||+++|++| +. .+. ..|.+++.+.++|.+
T Consensus 73 Pt~~~~~~g-~~-----~~~-~~G~~~~~~~~~i~~ 101 (102)
T cd02948 73 PTFLFYKNG-EL-----VAV-IRGANAPLLNKTITE 101 (102)
T ss_pred cEEEEEECC-EE-----EEE-EecCChHHHHHHHhh
Confidence 999999976 32 233 245688999998865
No 44
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.54 E-value=5.4e-14 Score=117.68 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=86.1
Q ss_pred hhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCc
Q psy8429 53 GQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAP 132 (314)
Q Consensus 53 ~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svP 132 (314)
.++|++.+.+. .+..++|.|+|+ ||+||+.+.|.++++|+.+. +.+.|+++|+|+++++.++|+|++.|
T Consensus 11 ~~e~d~~I~~~-~~~lVVvdF~A~----WCgpCk~m~p~l~~la~~~~------~~~~~~kVDVDe~~dla~~y~I~~~~ 79 (142)
T PLN00410 11 GWAVDQAILAE-EERLVVIRFGHD----WDETCMQMDEVLASVAETIK------NFAVIYLVDITEVPDFNTMYELYDPC 79 (142)
T ss_pred HHHHHHHHHhc-CCCEEEEEEECC----CChhHHHHHHHHHHHHHHcC------CceEEEEEECCCCHHHHHHcCccCCC
Confidence 47888888533 466899999999 99999999999999999985 56999999999999999999999887
Q ss_pred eEE-EecCCCCCCCCCccceeec--------ccCHHHHHHHHHhhcC----CcceeeCCCCCc
Q psy8429 133 IFM-HFPAKGKPKPSDTLDIQRV--------GYSAEAIVKWIADRTD----IQIRVFRPPNYS 182 (314)
Q Consensus 133 tl~-~f~p~~~~~~~~~~~~~~~--------~~~a~~l~~fI~~~~~----~~i~i~~p~~~~ 182 (314)
+++ +|+.| +. ..+...| ..+.++|.+-+..... -.--+..|.||+
T Consensus 80 t~~~ffk~g-~~----~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~~~~~~~~~~ 137 (142)
T PLN00410 80 TVMFFFRNK-HI----MIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVISPKDYS 137 (142)
T ss_pred cEEEEEECC-eE----EEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCeEEECCCccc
Confidence 766 88876 21 1233223 3567788777765432 112345677875
No 45
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.51 E-value=1e-13 Score=112.03 Aligned_cols=105 Identities=14% Similarity=0.209 Sum_probs=82.6
Q ss_pred CeEEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh
Q psy8429 47 AVLRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 47 ~VI~Lt~-~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (314)
.+.++++ ++|++.+. . +-.++|.|+++ ||++|+.+.|.++++|+.+. ++.|+++|.++++++.++
T Consensus 5 ~v~~i~~~~~~~~~i~-~--~~~vvV~f~a~----~c~~C~~~~p~l~~la~~~~-------~i~f~~Vd~~~~~~l~~~ 70 (113)
T cd02989 5 KYREVSDEKEFFEIVK-S--SERVVCHFYHP----EFFRCKIMDKHLEILAKKHL-------ETKFIKVNAEKAPFLVEK 70 (113)
T ss_pred CeEEeCCHHHHHHHHh-C--CCcEEEEEECC----CCccHHHHHHHHHHHHHHcC-------CCEEEEEEcccCHHHHHH
Confidence 4788888 89999984 3 24699999999 99999999999999999873 489999999999999999
Q ss_pred CCcccCceEEEecCCCCCCCC-Cccceee-cccCHHHHHHHH
Q psy8429 126 LRLNTAPIFMHFPAKGKPKPS-DTLDIQR-VGYSAEAIVKWI 165 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~~~-~~~~~~~-~~~~a~~l~~fI 165 (314)
++++++||+++|+.|...... ...++.. +..+++++.+|+
T Consensus 71 ~~v~~vPt~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 71 LNIKVLPTVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred CCCccCCEEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 999999999999987221100 0112211 345688888886
No 46
>KOG0908|consensus
Probab=99.50 E-value=7.9e-14 Score=124.45 Aligned_cols=108 Identities=21% Similarity=0.299 Sum_probs=91.3
Q ss_pred CeEEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh
Q psy8429 47 AVLRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 47 ~VI~Lt~-~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (314)
+||.+++ ++|+..+. ...-..++|+|||. ||+||+...|.|+.+|+.|. +-.|.+||+|+-++++..
T Consensus 2 ~Vi~v~~d~df~~~ls-~ag~k~v~Vdfta~----wCGPCk~IaP~Fs~lankYp-------~aVFlkVdVd~c~~taa~ 69 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELS-AAGGKLVVVDFTAS----WCGPCKRIAPIFSDLANKYP-------GAVFLKVDVDECRGTAAT 69 (288)
T ss_pred CeEEecCcHHHHHhhh-ccCceEEEEEEEec----ccchHHhhhhHHHHhhhhCc-------ccEEEEEeHHHhhchhhh
Confidence 5788865 68988874 33345799999999 99999999999999999994 689999999999999999
Q ss_pred CCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCcc
Q psy8429 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI 173 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~i 173 (314)
+||++.||++.|.++.+. +. ..|.++..|.+-|+++.+.+-
T Consensus 70 ~gV~amPTFiff~ng~ki------d~-~qGAd~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 70 NGVNAMPTFIFFRNGVKI------DQ-IQGADASGLEEKVAKYASTSA 110 (288)
T ss_pred cCcccCceEEEEecCeEe------ee-ecCCCHHHHHHHHHHHhccCc
Confidence 999999999999987332 22 367899999999999987664
No 47
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.49 E-value=1.6e-13 Score=108.57 Aligned_cols=101 Identities=16% Similarity=0.190 Sum_probs=81.0
Q ss_pred EEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCc
Q psy8429 49 LRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRL 128 (314)
Q Consensus 49 I~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v 128 (314)
.+++ ++|++. . . +..++|.|+|+ ||++|+.+.|+++++|+.+... ...+.++++|+++.+++++++++
T Consensus 3 ~~~~-~~~~~~-~-~--~~~vlv~f~a~----wC~~C~~~~p~l~~l~~~~~~~---~~~~~~~~vd~~~~~~~~~~~~I 70 (104)
T cd03000 3 LDLD-DSFKDV-R-K--EDIWLVDFYAP----WCGHCKKLEPVWNEVGAELKSS---GSPVRVGKLDATAYSSIASEFGV 70 (104)
T ss_pred eech-hhhhhh-c-c--CCeEEEEEECC----CCHHHHhhChHHHHHHHHHHhc---CCcEEEEEEECccCHhHHhhcCC
Confidence 3444 678885 3 2 33689999999 9999999999999999988521 13599999999999999999999
Q ss_pred ccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhh
Q psy8429 129 NTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 129 ~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~ 168 (314)
+++||+++|+++ .. +.. .|+.+.+.+.+|+++.
T Consensus 71 ~~~Pt~~l~~~~-~~-----~~~-~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 71 RGYPTIKLLKGD-LA-----YNY-RGPRTKDDIVEFANRV 103 (104)
T ss_pred ccccEEEEEcCC-Cc-----eee-cCCCCHHHHHHHHHhh
Confidence 999999999754 21 222 5778899999999864
No 48
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.49 E-value=2e-13 Score=134.04 Aligned_cols=112 Identities=22% Similarity=0.327 Sum_probs=94.1
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC
Q psy8429 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (314)
Q Consensus 47 ~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~ 126 (314)
.|++||+++|++.+.+ +..++|+|||+ ||++|+++.|+|+++|+.+.+. ..++.|+++|+++++++++++
T Consensus 2 ~v~~l~~~~~~~~i~~---~~~~~v~f~a~----wC~~c~~~~~~~~~~a~~~~~~---~~~v~~~~vd~~~~~~l~~~~ 71 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKS---HEFVLVEFYAP----WCGHCKSLAPEYEKAADELKKK---GPPIKLAKVDATEEKDLAQKY 71 (462)
T ss_pred CceECCHHHHHHHHhc---CCCEEEEEECC----CCHHHHhhhHHHHHHHHHHhhc---CCceEEEEEECCCcHHHHHhC
Confidence 5889999999999853 23589999999 9999999999999999988631 246999999999999999999
Q ss_pred CcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCcc
Q psy8429 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI 173 (314)
Q Consensus 127 ~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~i 173 (314)
+|+++||+.+|++|... ..++ .|+++++++.+|+.+.++..+
T Consensus 72 ~i~~~Pt~~~~~~g~~~----~~~~-~g~~~~~~l~~~i~~~~~~~~ 113 (462)
T TIGR01130 72 GVSGYPTLKIFRNGEDS----VSDY-NGPRDADGIVKYMKKQSGPAV 113 (462)
T ss_pred CCccccEEEEEeCCccc----eeEe-cCCCCHHHHHHHHHHhcCCCc
Confidence 99999999999986320 1222 578899999999999988664
No 49
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.48 E-value=2.1e-13 Score=120.21 Aligned_cols=121 Identities=11% Similarity=0.149 Sum_probs=89.9
Q ss_pred HHHHHHHhhhhCC---CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEE
Q psy8429 34 DRVLHLSEMNAKK---AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLF 110 (314)
Q Consensus 34 ~~~~~L~~l~~~~---~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~ 110 (314)
+++++|.+.+.++ .|.++++++|.+.+.+.+++.+|+|.||++ ||++|+.+.|.++++|+.|. .+.
T Consensus 67 kRl~el~~~~~~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~----wc~~C~~m~~~l~~LA~k~~-------~vk 135 (192)
T cd02988 67 KRLAEMKALAEKSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKD----GIPLCRLLNQHLSELARKFP-------DTK 135 (192)
T ss_pred HHHHHHHHhhhhCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECC----CCchHHHHHHHHHHHHHHCC-------CCE
Confidence 4555555544332 399999999998886555567899999999 99999999999999999874 589
Q ss_pred EEEEECCCCcchHHhCCcccCceEEEecCCCCCCCCCc-cceeecccCHHHHHHHHHhh
Q psy8429 111 FILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDT-LDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 111 F~~vD~~~~~~lf~~~~v~svPtl~~f~p~~~~~~~~~-~~~~~~~~~a~~l~~fI~~~ 168 (314)
|+++|+++. ...|+++++||+++|+.|........ .++.....+.+++..+|.+.
T Consensus 136 FvkI~ad~~---~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 136 FVKIISTQC---IPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEEEEhHHh---HhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 999999864 57899999999999998721110000 11111245788888887653
No 50
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.48 E-value=2.3e-13 Score=105.69 Aligned_cols=96 Identities=15% Similarity=0.298 Sum_probs=78.9
Q ss_pred ChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccC
Q psy8429 52 DGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTA 131 (314)
Q Consensus 52 t~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~sv 131 (314)
+.++|++.+.+.+ +..++|.|+++ ||++|+.+.|.++++++.+. +++.|+++|.+++++++++++++++
T Consensus 1 s~~~~~~~~~~~~-~~~v~v~f~~~----~C~~C~~~~~~l~~l~~~~~------~~i~~~~vd~~~~~~~~~~~~i~~~ 69 (97)
T cd02984 1 SEEEFEELLKSDA-SKLLVLHFWAP----WAEPCKQMNQVFEELAKEAF------PSVLFLSIEAEELPEISEKFEITAV 69 (97)
T ss_pred CHHHHHHHHhhCC-CCEEEEEEECC----CCHHHHHHhHHHHHHHHHhC------CceEEEEEccccCHHHHHhcCCccc
Confidence 3578899886443 56799999999 99999999999999999863 5799999999999999999999999
Q ss_pred ceEEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 132 PIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 132 Ptl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
|++++|+.| +. ... ..|.+.+++.+.|
T Consensus 70 Pt~~~~~~g-~~-----~~~-~~g~~~~~l~~~~ 96 (97)
T cd02984 70 PTFVFFRNG-TI-----VDR-VSGADPKELAKKV 96 (97)
T ss_pred cEEEEEECC-EE-----EEE-EeCCCHHHHHHhh
Confidence 999999875 32 122 2456778887765
No 51
>PTZ00102 disulphide isomerase; Provisional
Probab=99.46 E-value=2.4e-13 Score=134.74 Aligned_cols=112 Identities=9% Similarity=0.197 Sum_probs=94.6
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (314)
++|.+++.++|++.+.+. +..++|.|||+ ||++|+.+.|.|+++|+.+.. .+.+.|+++|++++...+++
T Consensus 357 ~~v~~l~~~~f~~~v~~~--~k~vlv~f~a~----wC~~C~~~~p~~~~~a~~~~~----~~~v~~~~id~~~~~~~~~~ 426 (477)
T PTZ00102 357 GPVKVVVGNTFEEIVFKS--DKDVLLEIYAP----WCGHCKNLEPVYNELGEKYKD----NDSIIVAKMNGTANETPLEE 426 (477)
T ss_pred CCeEEecccchHHHHhcC--CCCEEEEEECC----CCHHHHHHHHHHHHHHHHhcc----CCcEEEEEEECCCCccchhc
Confidence 348889999999997543 55799999999 999999999999999998753 24699999999999999999
Q ss_pred CCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCc
Q psy8429 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ 172 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~ 172 (314)
++++++||+++|++|++. ...+ .|.++.+++.+||+++....
T Consensus 427 ~~v~~~Pt~~~~~~~~~~----~~~~-~G~~~~~~l~~~i~~~~~~~ 468 (477)
T PTZ00102 427 FSWSAFPTILFVKAGERT----PIPY-EGERTVEGFKEFVNKHATNP 468 (477)
T ss_pred CCCcccCeEEEEECCCcc----eeEe-cCcCCHHHHHHHHHHcCCCC
Confidence 999999999999987432 1122 57789999999999998753
No 52
>KOG0190|consensus
Probab=99.43 E-value=4.4e-13 Score=131.64 Aligned_cols=109 Identities=17% Similarity=0.298 Sum_probs=91.1
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (314)
++|..+..+||++++.+. ...|++.|||| ||+||++++|.|+++|+.+.. .+++.++++|.+.|.- ..
T Consensus 366 ~pVkvvVgknfd~iv~de--~KdVLvEfyAP----WCgHCk~laP~~eeLAe~~~~----~~~vviAKmDaTaNd~--~~ 433 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDE--GKDVLVEFYAP----WCGHCKALAPIYEELAEKYKD----DENVVIAKMDATANDV--PS 433 (493)
T ss_pred CCeEEEeecCHHHHhhcc--ccceEEEEcCc----ccchhhhhhhHHHHHHHHhcC----CCCcEEEEeccccccC--cc
Confidence 468899999999999754 45699999999 999999999999999999974 3579999999999853 34
Q ss_pred CCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcC
Q psy8429 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~ 170 (314)
.+++++||+.+||.|++. +...| .|+++.++|..|+.+.-+
T Consensus 434 ~~~~~fPTI~~~pag~k~-~pv~y---~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 434 LKVDGFPTILFFPAGHKS-NPVIY---NGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred ccccccceEEEecCCCCC-CCccc---CCCcchHHHHhhhccCCC
Confidence 678889999999998543 22334 588999999999988865
No 53
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.41 E-value=1.5e-12 Score=105.15 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=74.8
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecCCCCCCC
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKP 145 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p~~~~~~ 145 (314)
+..++|+|+|+ ||++|+.++|.++++|+.+ +++.|.++|.++++++.++|+++++||+++|++|++.
T Consensus 22 ~~~vvv~f~a~----wC~~C~~~~~~l~~la~~~-------~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~-- 88 (113)
T cd02975 22 PVDLVVFSSKE----GCQYCEVTKQLLEELSELS-------DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKD-- 88 (113)
T ss_pred CeEEEEEeCCC----CCCChHHHHHHHHHHHHhc-------CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeec--
Confidence 45688999999 9999999999999999764 3599999999999999999999999999999986432
Q ss_pred CCccceeecccCHHHHHHHHHhhcC
Q psy8429 146 SDTLDIQRVGYSAEAIVKWIADRTD 170 (314)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fI~~~~~ 170 (314)
....+ .|..+.+++.+||.....
T Consensus 89 -~~~~~-~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 89 -GGIRY-YGLPAGYEFASLIEDIVR 111 (113)
T ss_pred -ceEEE-EecCchHHHHHHHHHHHh
Confidence 12223 455678899999987754
No 54
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.41 E-value=1.4e-12 Score=103.02 Aligned_cols=95 Identities=11% Similarity=0.163 Sum_probs=75.5
Q ss_pred hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHH---HHHHHHhccccCCCCcEEEEEEECCC----CcchHHhC
Q psy8429 54 QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEY---TIVANSFRYSQMYSNKLFFILVDFDE----GSDVFQML 126 (314)
Q Consensus 54 ~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pef---e~vA~s~~~~~~~~~~v~F~~vD~~~----~~~lf~~~ 126 (314)
++|++.+. . +.+++|.|+|+ ||++|+++.|.+ +++++.+. +++.++++|+++ ++++.+++
T Consensus 2 ~~~~~~~~-~--~k~vlv~f~a~----wC~~C~~~~~~~~~~~~~~~~~~------~~~~~~~vd~~~~~~~~~~~~~~~ 68 (104)
T cd02953 2 AALAQALA-Q--GKPVFVDFTAD----WCVTCKVNEKVVFSDPEVQAALK------KDVVLLRADWTKNDPEITALLKRF 68 (104)
T ss_pred HHHHHHHH-c--CCeEEEEEEcc----hhHHHHHHHHHhcCCHHHHHHHh------CCeEEEEEecCCCCHHHHHHHHHc
Confidence 56777653 2 45799999999 999999999998 68887764 369999999987 57899999
Q ss_pred CcccCceEEEecC-CCCCCCCCccceeecccCHHHHHHHHH
Q psy8429 127 RLNTAPIFMHFPA-KGKPKPSDTLDIQRVGYSAEAIVKWIA 166 (314)
Q Consensus 127 ~v~svPtl~~f~p-~~~~~~~~~~~~~~~~~~a~~l~~fI~ 166 (314)
+++++||+++|.+ +|+. .....|..+.+++.++|+
T Consensus 69 ~i~~~Pti~~~~~~~g~~-----~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 69 GVFGPPTYLFYGPGGEPE-----PLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCEEEEECCCCCCC-----CcccccccCHHHHHHHhC
Confidence 9999999999997 3332 122246688999988873
No 55
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.37 E-value=3.4e-12 Score=100.16 Aligned_cols=89 Identities=18% Similarity=0.310 Sum_probs=75.5
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcc--cCceEEEecCCCCC
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLN--TAPIFMHFPAKGKP 143 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~--svPtl~~f~p~~~~ 143 (314)
+.+++++|+++ ||++|+++.|.++++|+.+. +++.|+.+|.++++++.++++++ ++|++.+++.+..
T Consensus 12 ~~~~~~~f~~~----~~~~~~~~~~~~~~vA~~~~------~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~- 80 (103)
T cd02982 12 GKPLLVLFYNK----DDSESEELRERFKEVAKKFK------GKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDG- 80 (103)
T ss_pred CCCEEEEEEcC----ChhhHHHHHHHHHHHHHHhC------CeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccc-
Confidence 45789999999 99999999999999999996 57999999999999999999999 9999999998411
Q ss_pred CCCCccceeecccCHHHHHHHHHhh
Q psy8429 144 KPSDTLDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 144 ~~~~~~~~~~~~~~a~~l~~fI~~~ 168 (314)
..|....+..+.+++.+|+.+.
T Consensus 81 ---~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 81 ---KKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred ---cccCCCccccCHHHHHHHHHhh
Confidence 1233333345899999999864
No 56
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.36 E-value=5.1e-12 Score=98.79 Aligned_cols=85 Identities=16% Similarity=0.291 Sum_probs=72.5
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecCCCCCCC
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKP 145 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p~~~~~~ 145 (314)
+-.++++|+++ ||++|+.+.|.++++++.+. +++.|.++|.++++++.++++++++|++++|++| +.
T Consensus 13 ~~~vlv~f~a~----~C~~C~~~~~~l~~l~~~~~------~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g-~~-- 79 (97)
T cd02949 13 DRLILVLYTSP----TCGPCRTLKPILNKVIDEFD------GAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK-EL-- 79 (97)
T ss_pred CCeEEEEEECC----CChhHHHHHHHHHHHHHHhC------CceEEEEEECCCCHHHHHHCCCeeccEEEEEECC-eE--
Confidence 45789999999 99999999999999998875 4699999999999999999999999999999865 32
Q ss_pred CCccceeecccCHHHHHHHHH
Q psy8429 146 SDTLDIQRVGYSAEAIVKWIA 166 (314)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fI~ 166 (314)
.....+..+.+++.+|++
T Consensus 80 ---v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 80 ---VKEISGVKMKSEYREFIE 97 (97)
T ss_pred ---EEEEeCCccHHHHHHhhC
Confidence 222246678888988873
No 57
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.35 E-value=7.2e-12 Score=105.24 Aligned_cols=100 Identities=11% Similarity=0.204 Sum_probs=78.2
Q ss_pred hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC--cchHHhCCcccC
Q psy8429 54 QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG--SDVFQMLRLNTA 131 (314)
Q Consensus 54 ~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~--~~lf~~~~v~sv 131 (314)
..|++.+. . +..++|.|||+ ||++|+.+.|.++++++.+. +++.|+.+|++++ +++.++|+|+++
T Consensus 11 ~~~~~a~~-~--gk~vvV~F~A~----WC~~C~~~~p~l~~l~~~~~------~~~~~v~v~vd~~~~~~~~~~~~V~~i 77 (142)
T cd02950 11 TPPEVALS-N--GKPTLVEFYAD----WCTVCQEMAPDVAKLKQKYG------DQVNFVMLNVDNPKWLPEIDRYRVDGI 77 (142)
T ss_pred CCHHHHHh-C--CCEEEEEEECC----cCHHHHHhHHHHHHHHHHhc------cCeeEEEEEcCCcccHHHHHHcCCCCC
Confidence 44566543 2 44699999999 99999999999999999885 3577888888764 588999999999
Q ss_pred ceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCC
Q psy8429 132 PIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDI 171 (314)
Q Consensus 132 Ptl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~ 171 (314)
|++++|.++|+. .....|..+.+++.+++.+....
T Consensus 78 Pt~v~~~~~G~~-----v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 78 PHFVFLDREGNE-----EGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred CEEEEECCCCCE-----EEEEeCCCCHHHHHHHHHHHHcC
Confidence 999999755443 22334667789999999887753
No 58
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.34 E-value=7.3e-12 Score=123.01 Aligned_cols=114 Identities=17% Similarity=0.266 Sum_probs=91.3
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (314)
+.|.+|+.++|++.+.+. +..++|+|+|+ ||++|+.+.|.++++|+.+... ..++.|+++|++.+.- ..
T Consensus 346 ~~v~~l~~~~f~~~v~~~--~~~vlv~f~a~----wC~~C~~~~p~~~~~~~~~~~~---~~~i~~~~id~~~n~~-~~- 414 (462)
T TIGR01130 346 GPVKVLVGKNFDEIVLDE--TKDVLVEFYAP----WCGHCKNLAPIYEELAEKYKDA---ESDVVIAKMDATANDV-PP- 414 (462)
T ss_pred CccEEeeCcCHHHHhccC--CCeEEEEEECC----CCHhHHHHHHHHHHHHHHhhcC---CCcEEEEEEECCCCcc-CC-
Confidence 358889999999998543 56799999999 9999999999999999998621 1369999999998753 33
Q ss_pred CCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCcce
Q psy8429 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQIR 174 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~i~ 174 (314)
++++++||+.+|++|++. +. .+. .|+.+.+.+.+||.++...+++
T Consensus 415 ~~i~~~Pt~~~~~~~~~~-~~--~~~-~g~~~~~~l~~~l~~~~~~~~~ 459 (462)
T TIGR01130 415 FEVEGFPTIKFVPAGKKS-EP--VPY-DGDRTLEDFSKFIAKHATFPLE 459 (462)
T ss_pred CCccccCEEEEEeCCCCc-Cc--eEe-cCcCCHHHHHHHHHhcCCCCCc
Confidence 999999999999987431 11 122 4678999999999999876654
No 59
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.33 E-value=1.1e-11 Score=93.47 Aligned_cols=92 Identities=23% Similarity=0.369 Sum_probs=75.3
Q ss_pred hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCce
Q psy8429 54 QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPI 133 (314)
Q Consensus 54 ~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPt 133 (314)
++|++.+.++ ..++++||++ ||++|+++.|.++++++. . +++.|+.+|++++++++++++++++|+
T Consensus 1 ~~~~~~~~~~---~~~ll~~~~~----~C~~C~~~~~~~~~~~~~-~------~~~~~~~i~~~~~~~~~~~~~v~~~P~ 66 (93)
T cd02947 1 EEFEELIKSA---KPVVVDFWAP----WCGPCKAIAPVLEELAEE-Y------PKVKFVKVDVDENPELAEEYGVRSIPT 66 (93)
T ss_pred CchHHHHhcC---CcEEEEEECC----CChhHHHhhHHHHHHHHH-C------CCceEEEEECCCChhHHHhcCcccccE
Confidence 3577776422 5689999999 999999999999999987 2 469999999999999999999999999
Q ss_pred EEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 134 FMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 134 l~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
+++|++| +. .....+..+.+++.+||
T Consensus 67 ~~~~~~g-~~-----~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 67 FLFFKNG-KE-----VDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEECC-EE-----EEEEecCCCHHHHHHHh
Confidence 9999876 31 12224566778888887
No 60
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.32 E-value=5.7e-12 Score=102.67 Aligned_cols=80 Identities=14% Similarity=0.266 Sum_probs=66.8
Q ss_pred ChhhHHHHHHcCCCCccEEEEEee-------CCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC------
Q psy8429 52 DGQKYKEYIKNGPRNYSAIVMFTA-------LAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE------ 118 (314)
Q Consensus 52 t~~nf~~~v~~~~r~y~vvV~FtA-------~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~------ 118 (314)
+.++|++.+.+ ..+.+++|.|+| + ||++|+.++|.++++++.+. +++.|++||+++
T Consensus 8 ~~~~f~~~i~~-~~~~~vvV~F~A~~~~~~~~----WC~pCr~~~P~l~~l~~~~~------~~v~fv~Vdvd~~~~w~d 76 (119)
T cd02952 8 GYEEFLKLLKS-HEGKPIFILFYGDKDPDGQS----WCPDCVKAEPVVREALKAAP------EDCVFIYCDVGDRPYWRD 76 (119)
T ss_pred CHHHHHHHHHh-cCCCeEEEEEEccCCCCCCC----CCHhHHhhchhHHHHHHHCC------CCCEEEEEEcCCcccccC
Confidence 34677787753 234579999999 7 99999999999999999875 468999999987
Q ss_pred -CcchHHhCCcc-cCceEEEecCCCC
Q psy8429 119 -GSDVFQMLRLN-TAPIFMHFPAKGK 142 (314)
Q Consensus 119 -~~~lf~~~~v~-svPtl~~f~p~~~ 142 (314)
+.++..+++|+ ++||+++|+.+++
T Consensus 77 ~~~~~~~~~~I~~~iPT~~~~~~~~~ 102 (119)
T cd02952 77 PNNPFRTDPKLTTGVPTLLRWKTPQR 102 (119)
T ss_pred cchhhHhccCcccCCCEEEEEcCCce
Confidence 45899999999 9999999987643
No 61
>PTZ00051 thioredoxin; Provisional
Probab=99.31 E-value=9.1e-12 Score=96.94 Aligned_cols=79 Identities=25% Similarity=0.365 Sum_probs=68.2
Q ss_pred eEEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC
Q psy8429 48 VLRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (314)
Q Consensus 48 VI~Lt~-~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~ 126 (314)
|.++++ ++|++.+. . +..+++.||++ ||++|+.+.|.++++++.+. ++.|+.+|.++++++.+++
T Consensus 2 v~~i~~~~~~~~~~~-~--~~~vli~f~~~----~C~~C~~~~~~l~~l~~~~~-------~~~~~~vd~~~~~~~~~~~ 67 (98)
T PTZ00051 2 VHIVTSQAEFESTLS-Q--NELVIVDFYAE----WCGPCKRIAPFYEECSKEYT-------KMVFVKVDVDELSEVAEKE 67 (98)
T ss_pred eEEecCHHHHHHHHh-c--CCeEEEEEECC----CCHHHHHHhHHHHHHHHHcC-------CcEEEEEECcchHHHHHHC
Confidence 455654 67888753 3 55799999999 99999999999999998753 4899999999999999999
Q ss_pred CcccCceEEEecCC
Q psy8429 127 RLNTAPIFMHFPAK 140 (314)
Q Consensus 127 ~v~svPtl~~f~p~ 140 (314)
+++++|++++|+.|
T Consensus 68 ~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 68 NITSMPTFKVFKNG 81 (98)
T ss_pred CCceeeEEEEEeCC
Confidence 99999999999876
No 62
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.28 E-value=3.5e-11 Score=98.57 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=73.6
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc-----
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS----- 120 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~----- 120 (314)
.++.++|.+++++.+.++ -.++|+|+++ ||++|+.+.|.++++++.. ++-|..+|+++++
T Consensus 6 ~~~~~it~~~~~~~i~~~---~~~iv~f~~~----~Cp~C~~~~P~l~~~~~~~--------~~~~y~vdvd~~~~~~~~ 70 (122)
T TIGR01295 6 KGLEVTTVVRALEALDKK---ETATFFIGRK----TCPYCRKFSGTLSGVVAQT--------KAPIYYIDSENNGSFEMS 70 (122)
T ss_pred ccceecCHHHHHHHHHcC---CcEEEEEECC----CChhHHHHhHHHHHHHHhc--------CCcEEEEECCCccCcCcc
Confidence 467889999999998533 3478999999 9999999999999999873 2446666666432
Q ss_pred ------chHHhCC----cccCceEEEecCCCCCCCCCccceeec-ccCHHHHHHHHH
Q psy8429 121 ------DVFQMLR----LNTAPIFMHFPAKGKPKPSDTLDIQRV-GYSAEAIVKWIA 166 (314)
Q Consensus 121 ------~lf~~~~----v~svPtl~~f~p~~~~~~~~~~~~~~~-~~~a~~l~~fI~ 166 (314)
++.++++ +.++||+++|+.| +. .+...| ..++++|.+|+.
T Consensus 71 ~~~~~~~~~~~~~i~~~i~~~PT~v~~k~G-k~-----v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 71 SLNDLTAFRSRFGIPTSFMGTPTFVHITDG-KQ-----VSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cHHHHHHHHHHcCCcccCCCCCEEEEEeCC-eE-----EEEEeCCCCCHHHHHHHhh
Confidence 4446655 5559999999997 32 233334 456999998874
No 63
>KOG4277|consensus
Probab=99.26 E-value=9.4e-12 Score=113.92 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=79.3
Q ss_pred CCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecCCCCC
Q psy8429 64 PRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKP 143 (314)
Q Consensus 64 ~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p~~~~ 143 (314)
+.+--++|.|||| ||.||+.++|.|.+|.-.... .+.++..+++|++..|.++.+++|+++||+.+|+.+-
T Consensus 41 kdddiW~VdFYAP----WC~HCKkLePiWdeVG~elkd---ig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~-- 111 (468)
T KOG4277|consen 41 KDDDIWFVDFYAP----WCAHCKKLEPIWDEVGHELKD---IGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDH-- 111 (468)
T ss_pred ccCCeEEEEeech----hhhhcccccchhHHhCcchhh---cCCceeecccccccchhhHhhhccCCCceEEEecCCe--
Confidence 3355678999999 999999999999999987753 2357999999999999999999999999999999752
Q ss_pred CCCCccceeecccCHHHHHHHHHhhcC
Q psy8429 144 KPSDTLDIQRVGYSAEAIVKWIADRTD 170 (314)
Q Consensus 144 ~~~~~~~~~~~~~~a~~l~~fI~~~~~ 170 (314)
.++. .||++.+++++|..+-.+
T Consensus 112 ----a~dY-RG~R~Kd~iieFAhR~a~ 133 (468)
T KOG4277|consen 112 ----AIDY-RGGREKDAIIEFAHRCAA 133 (468)
T ss_pred ----eeec-CCCccHHHHHHHHHhccc
Confidence 2444 589999999999887766
No 64
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.23 E-value=7.4e-11 Score=88.63 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=66.9
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecCCCCCCCCCcc
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTL 149 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p~~~~~~~~~~ 149 (314)
+.+|+++ ||++|+.+.|.++++++.+. +++.+.++|.++++++.++++++++|++++ .| + .
T Consensus 3 v~~f~~~----~C~~C~~~~~~l~~l~~~~~------~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g-~------~ 63 (82)
T TIGR00411 3 IELFTSP----TCPYCPAAKRVVEEVAKEMG------DAVEVEYINVMENPQKAMEYGIMAVPAIVI--NG-D------V 63 (82)
T ss_pred EEEEECC----CCcchHHHHHHHHHHHHHhc------CceEEEEEeCccCHHHHHHcCCccCCEEEE--CC-E------E
Confidence 5789999 99999999999999999875 459999999999999999999999999986 33 2 1
Q ss_pred ceeecccCHHHHHHHHHhh
Q psy8429 150 DIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 150 ~~~~~~~~a~~l~~fI~~~ 168 (314)
. ..|..+.+++.+++.+.
T Consensus 64 ~-~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 64 E-FIGAPTKEELVEAIKKR 81 (82)
T ss_pred E-EecCCCHHHHHHHHHhh
Confidence 1 24666899999998764
No 65
>KOG1731|consensus
Probab=99.22 E-value=1.8e-11 Score=120.46 Aligned_cols=88 Identities=15% Similarity=0.326 Sum_probs=76.2
Q ss_pred hCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC--Ccc
Q psy8429 44 AKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE--GSD 121 (314)
Q Consensus 44 ~~~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~--~~~ 121 (314)
.+|+|++|+.++|+..+. ++|. .-+|.|+++ ||++|+.|+|.|+++|+...+ =..-|..+.|||.+ |.+
T Consensus 37 ~~D~ii~Ld~~tf~~~v~-~~~~-~~lVEFy~s----wCGhCr~FAPtfk~~A~dl~~---W~~vv~vaaVdCA~~~N~~ 107 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVF-GSRK-AKLVEFYNS----WCGHCRAFAPTFKKFAKDLEK---WRPVVRVAAVDCADEENVK 107 (606)
T ss_pred CCCCeEEeehhhhHHHhc-ccch-hHHHHHHHh----hhhhhhhcchHHHHHHHHHhc---ccceeEEEEeeccchhhhh
Confidence 458899999999999985 5543 457899999 999999999999999987642 11459999999998 889
Q ss_pred hHHhCCcccCceEEEecCC
Q psy8429 122 VFQMLRLNTAPIFMHFPAK 140 (314)
Q Consensus 122 lf~~~~v~svPtl~~f~p~ 140 (314)
+|++++|+++|++.+|||+
T Consensus 108 lCRef~V~~~Ptlryf~~~ 126 (606)
T KOG1731|consen 108 LCREFSVSGYPTLRYFPPD 126 (606)
T ss_pred hHhhcCCCCCceeeecCCc
Confidence 9999999999999999997
No 66
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.21 E-value=7.2e-11 Score=96.38 Aligned_cols=89 Identities=12% Similarity=0.335 Sum_probs=71.5
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHH---HHHHHhccccCCCCcEEEEEEECCCC-------------cchHHhCCccc
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYT---IVANSFRYSQMYSNKLFFILVDFDEG-------------SDVFQMLRLNT 130 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe---~vA~s~~~~~~~~~~v~F~~vD~~~~-------------~~lf~~~~v~s 130 (314)
..++|.|+|+ ||++|+.++|++. .+++.+. +++.+.++|++++ +++.+++++++
T Consensus 15 k~vlv~f~a~----wC~~C~~~~~~~~~~~~~~~~~~------~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 15 KPLLLLFSQP----GCPYCDKLKRDYLNDPAVQAYIR------AHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred CcEEEEEeCC----CCHHHHHHHHHhcCcHHHHHHHH------hheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 5799999999 9999999999985 5666654 3588999999875 68899999999
Q ss_pred CceEEEecCC-CCCCCCCccceeecccCHHHHHHHHHhhcC
Q psy8429 131 APIFMHFPAK-GKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (314)
Q Consensus 131 vPtl~~f~p~-~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~ 170 (314)
+||+++|.++ |+. .....|..+.+++.+++++..+
T Consensus 85 ~Pt~~~~~~~gg~~-----~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 85 TPTVIFLDPEGGKE-----IARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred ccEEEEEcCCCCce-----eEEecCCCCHHHHHHHHHHHHh
Confidence 9999999986 443 2223466778899998887654
No 67
>KOG0912|consensus
Probab=99.21 E-value=3.3e-11 Score=110.53 Aligned_cols=110 Identities=20% Similarity=0.240 Sum_probs=94.1
Q ss_pred eChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCccc
Q psy8429 51 FDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNT 130 (314)
Q Consensus 51 Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~s 130 (314)
+|.+|.+..+ +. +-.++|-|||. ||.-.+.++|+|++.|+.+.+..++ +++.+++|||+.+.+++.+|.|+-
T Consensus 1 lt~~N~~~il-~s--~elvfv~FyAd----WCrFSq~L~piF~EAa~~~~~e~P~-~kvvwg~VDcd~e~~ia~ky~I~K 72 (375)
T KOG0912|consen 1 LTSENIDSIL-DS--NELVFVNFYAD----WCRFSQMLKPIFEEAAAKFKQEFPE-GKVVWGKVDCDKEDDIADKYHINK 72 (375)
T ss_pred CccccHHHhh-cc--ceEEeeeeehh----hchHHHHHhHHHHHHHHHHHHhCCC-cceEEEEcccchhhHHhhhhcccc
Confidence 4678888886 34 55788999999 9999999999999999999876665 789999999999999999999999
Q ss_pred CceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCcc
Q psy8429 131 APIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI 173 (314)
Q Consensus 131 vPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~i 173 (314)
+||+.+|..|.-.+ .+| .|.++++.+.+||++....++
T Consensus 73 yPTlKvfrnG~~~~--rEY---Rg~RsVeaL~efi~kq~s~~i 110 (375)
T KOG0912|consen 73 YPTLKVFRNGEMMK--REY---RGQRSVEALIEFIEKQLSDPI 110 (375)
T ss_pred Cceeeeeeccchhh--hhh---ccchhHHHHHHHHHHHhccHH
Confidence 99999999973222 134 477999999999999988765
No 68
>KOG0191|consensus
Probab=99.16 E-value=1.1e-10 Score=113.41 Aligned_cols=111 Identities=17% Similarity=0.273 Sum_probs=90.3
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (314)
++..+++..+|....... +...+|+|+|+ ||++|+.+.|+|+++|+.+. +.+.++.+|++++++++++
T Consensus 29 ~~~~~~~~~~~~~~~~~~--~~~~~v~fyap----wc~~c~~l~~~~~~~~~~l~------~~~~~~~vd~~~~~~~~~~ 96 (383)
T KOG0191|consen 29 GVVSELTLDSFFDFLLKD--DSPWLVEFYAP----WCGHCKKLAPTYKKLAKALK------GKVKIGAVDCDEHKDLCEK 96 (383)
T ss_pred cchhhhhccccHHHhhcc--CCceEEEEECC----CCcchhhhchHHHHHHHHhc------CceEEEEeCchhhHHHHHh
Confidence 345556666666665433 45688999999 99999999999999999986 4799999999999999999
Q ss_pred CCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCcce
Q psy8429 126 LRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQIR 174 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~i~ 174 (314)
+++++.||+..|.++ .. ..+| .+..+++++++|+.+.+...+.
T Consensus 97 y~i~gfPtl~~f~~~-~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~ 139 (383)
T KOG0191|consen 97 YGIQGFPTLKVFRPG-KK--PIDY---SGPRNAESLAEFLIKELEPSVK 139 (383)
T ss_pred cCCccCcEEEEEcCC-Cc--eeec---cCcccHHHHHHHHHHhhccccc
Confidence 999999999999997 21 1222 3578899999999988876653
No 69
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.15 E-value=7.1e-11 Score=105.78 Aligned_cols=103 Identities=15% Similarity=0.085 Sum_probs=76.5
Q ss_pred ChhhHHHHHHcCCCCccEEEEEee---CCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCc
Q psy8429 52 DGQKYKEYIKNGPRNYSAIVMFTA---LAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRL 128 (314)
Q Consensus 52 t~~nf~~~v~~~~r~y~vvV~FtA---~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v 128 (314)
..+.|.+.+. + +. .+++|++ + ||++|+.+.|.++++|+.+.+ -++.++++|.++++++.++|+|
T Consensus 9 ~~~~~~~~~~-~--~~-~i~~f~~~~a~----wC~~C~~~~p~l~~la~~~~~-----~~i~~v~vd~~~~~~l~~~~~V 75 (215)
T TIGR02187 9 LKELFLKELK-N--PV-EIVVFTDNDKE----GCQYCKETEQLLEELSEVSPK-----LKLEIYDFDTPEDKEEAEKYGV 75 (215)
T ss_pred HHHHHHHhcC-C--Ce-EEEEEcCCCCC----CCCchHHHHHHHHHHHhhCCC-----ceEEEEecCCcccHHHHHHcCC
Confidence 3455444442 3 33 4666777 6 999999999999999988731 2477888888899999999999
Q ss_pred ccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCc
Q psy8429 129 NTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ 172 (314)
Q Consensus 129 ~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~ 172 (314)
+++||+++|++| +. ......|..+.+++.+||.+.++.+
T Consensus 76 ~~~Pt~~~f~~g-~~----~~~~~~G~~~~~~l~~~i~~~~~~~ 114 (215)
T TIGR02187 76 ERVPTTIILEEG-KD----GGIRYTGIPAGYEFAALIEDIVRVS 114 (215)
T ss_pred CccCEEEEEeCC-ee----eEEEEeecCCHHHHHHHHHHHHHhc
Confidence 999999999986 22 1112246667788999998887644
No 70
>KOG0191|consensus
Probab=99.10 E-value=2.9e-10 Score=110.30 Aligned_cols=112 Identities=15% Similarity=0.238 Sum_probs=95.2
Q ss_pred CC-eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHH
Q psy8429 46 KA-VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQ 124 (314)
Q Consensus 46 ~~-VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~ 124 (314)
.+ +.+++++||++.+.+. +-..+|.|+|| ||++|+.+.|+|+++|+.+.. ...+..+.+|++.++.+++
T Consensus 143 ~~~v~~l~~~~~~~~~~~~--~~~~lv~f~aP----wc~~ck~l~~~~~~~a~~~~~----~~~v~~~~~d~~~~~~~~~ 212 (383)
T KOG0191|consen 143 EGEVFELTKDNFDETVKDS--DADWLVEFYAP----WCGHCKKLAPEWEKLAKLLKS----KENVELGKIDATVHKSLAS 212 (383)
T ss_pred CCceEEccccchhhhhhcc--CcceEEEEecc----ccHHhhhcChHHHHHHHHhcc----CcceEEEeeccchHHHHhh
Confidence 34 9999999999998655 44578999999 999999999999999998752 3579999999999999999
Q ss_pred hCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCc
Q psy8429 125 MLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ 172 (314)
Q Consensus 125 ~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~ 172 (314)
+++++..|++.+|+++.+ ..+ ...+.++.+.+.+|+++..+.+
T Consensus 213 ~~~v~~~Pt~~~f~~~~~--~~~---~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 213 RLEVRGYPTLKLFPPGEE--DIY---YYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred hhcccCCceEEEecCCCc--ccc---cccccccHHHHHHHHHhhcCCC
Confidence 999999999999999743 111 2257799999999999998874
No 71
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.06 E-value=2e-09 Score=96.44 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=77.1
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCC
Q psy8429 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (314)
Q Consensus 48 VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~ 127 (314)
-..+++++.+.+ .+.+ +-..++.|||+ ||++|+.+.|.+++++... +++.+.++|.++++++.++++
T Consensus 117 ~~~L~~~~~~~l-~~~~-~pv~I~~F~a~----~C~~C~~~~~~l~~l~~~~-------~~i~~~~vD~~~~~~~~~~~~ 183 (215)
T TIGR02187 117 EPGLSEKTVELL-QSLD-EPVRIEVFVTP----TCPYCPYAVLMAHKFALAN-------DKILGEMIEANENPDLAEKYG 183 (215)
T ss_pred CCCCCHHHHHHH-HhcC-CCcEEEEEECC----CCCCcHHHHHHHHHHHHhc-------CceEEEEEeCCCCHHHHHHhC
Confidence 346777766665 3332 33456779999 9999999999999999763 469999999999999999999
Q ss_pred cccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHh
Q psy8429 128 LNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (314)
Q Consensus 128 v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~ 167 (314)
++++||++++..+ . . ..|..+.+++.+|+.+
T Consensus 184 V~~vPtl~i~~~~-~-------~-~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 184 VMSVPKIVINKGV-E-------E-FVGAYPEEQFLEYILS 214 (215)
T ss_pred CccCCEEEEecCC-E-------E-EECCCCHHHHHHHHHh
Confidence 9999999998654 1 1 2466788999999865
No 72
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.04 E-value=1e-09 Score=111.73 Aligned_cols=107 Identities=12% Similarity=0.168 Sum_probs=80.6
Q ss_pred eEEeC-hhhHHHHHHc-CCCCccEEEEEeeCCCCCCCccchhhHHHH---HHHHHHhccccCCCCcEEEEEEECCCC---
Q psy8429 48 VLRFD-GQKYKEYIKN-GPRNYSAIVMFTALAPQRNCHICVSASDEY---TIVANSFRYSQMYSNKLFFILVDFDEG--- 119 (314)
Q Consensus 48 VI~Lt-~~nf~~~v~~-~~r~y~vvV~FtA~~~~~~C~~C~~~~pef---e~vA~s~~~~~~~~~~v~F~~vD~~~~--- 119 (314)
..+++ .+++++.+.+ ..++..++|+|||+ ||++|++++|.. +++++.+. ++.+.++|++++
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~----WC~~Ck~~e~~~~~~~~v~~~l~-------~~~~v~vDvt~~~~~ 522 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYAD----WCVACKEFEKYTFSDPQVQQALA-------DTVLLQADVTANNAE 522 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECC----cCHhHHHHHHHhcCCHHHHHHhc-------CCEEEEEECCCCChh
Confidence 44553 4778877642 23356799999999 999999999975 67776653 488999999874
Q ss_pred -cchHHhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhh
Q psy8429 120 -SDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 120 -~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~ 168 (314)
+++.++++++++|++++|+++|+..+ ..+ ..|..+++++.+++++.
T Consensus 523 ~~~l~~~~~v~g~Pt~~~~~~~G~~i~--~~r-~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 523 DVALLKHYNVLGLPTILFFDAQGQEIP--DAR-VTGFMDAAAFAAHLRQL 569 (571)
T ss_pred hHHHHHHcCCCCCCEEEEECCCCCCcc--ccc-ccCCCCHHHHHHHHHHh
Confidence 68899999999999999987654311 112 24667899999999875
No 73
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.04 E-value=3.8e-10 Score=91.71 Aligned_cols=69 Identities=9% Similarity=0.217 Sum_probs=53.9
Q ss_pred CCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc-chHHhCCccc--CceEEEecCCC
Q psy8429 65 RNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS-DVFQMLRLNT--APIFMHFPAKG 141 (314)
Q Consensus 65 r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~-~lf~~~~v~s--vPtl~~f~p~~ 141 (314)
++.+++|.|+|+ ||++|+.++|.+++.++... ....|..+|+++++ ...+++++.+ +|++++|.++|
T Consensus 18 ~~kpVlV~F~a~----WC~~C~~~~~~~~~~~~~~~------~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~G 87 (117)
T cd02959 18 SGKPLMLLIHKT----WCGACKALKPKFAESKEISE------LSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSG 87 (117)
T ss_pred cCCcEEEEEeCC----cCHHHHHHHHHHhhhHHHHh------hcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCC
Confidence 456799999999 99999999999999877543 12346667777654 4567899987 99999998766
Q ss_pred CC
Q psy8429 142 KP 143 (314)
Q Consensus 142 ~~ 143 (314)
+.
T Consensus 88 k~ 89 (117)
T cd02959 88 DV 89 (117)
T ss_pred CC
Confidence 54
No 74
>PTZ00062 glutaredoxin; Provisional
Probab=99.03 E-value=1.8e-09 Score=95.96 Aligned_cols=92 Identities=12% Similarity=0.157 Sum_probs=73.1
Q ss_pred ChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccC
Q psy8429 52 DGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTA 131 (314)
Q Consensus 52 t~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~sv 131 (314)
+.+.|++.+. ++ ...++++|+|+ ||++|+.+.|.++++|+.+. .+.|++||.+ ++|.++
T Consensus 5 ~~ee~~~~i~-~~-~g~~vl~f~a~----w~~~C~~m~~vl~~l~~~~~-------~~~F~~V~~d--------~~V~~v 63 (204)
T PTZ00062 5 KKEEKDKLIE-SN-TGKLVLYVKSS----KEPEYEQLMDVCNALVEDFP-------SLEFYVVNLA--------DANNEY 63 (204)
T ss_pred CHHHHHHHHh-cC-CCcEEEEEeCC----CCcchHHHHHHHHHHHHHCC-------CcEEEEEccc--------cCcccc
Confidence 4567888764 22 24588999999 99999999999999999873 5999999987 999999
Q ss_pred ceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCC
Q psy8429 132 PIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDI 171 (314)
Q Consensus 132 Ptl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~ 171 (314)
|++++|+.|.. .+. ..|.++.++.++++++.+.
T Consensus 64 Ptfv~~~~g~~------i~r-~~G~~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 64 GVFEFYQNSQL------INS-LEGCNTSTLVSFIRGWAQK 96 (204)
T ss_pred eEEEEEECCEE------Eee-eeCCCHHHHHHHHHHHcCC
Confidence 99999998632 222 2466788888888777663
No 75
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.98 E-value=1.7e-09 Score=78.44 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=51.3
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEE
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMH 136 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~ 136 (314)
+++|+++ ||++|++++|.++++++.. +++.|.++|.++++++.++++++++|++++
T Consensus 3 v~~f~~~----~C~~C~~~~~~l~~l~~~~-------~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSP----TCPYCPDAVQAANRIAALN-------PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECC----CCCCcHHHHHHHHHHHHhC-------CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 6789999 9999999999999998764 369999999999999999999999999975
No 76
>PHA02125 thioredoxin-like protein
Probab=98.83 E-value=6e-09 Score=77.77 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=45.2
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEE
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFM 135 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~ 135 (314)
+++|||+ ||++|+.+.|.+++++ ..++++|.++++++.++++++++||++
T Consensus 2 iv~f~a~----wC~~Ck~~~~~l~~~~------------~~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAE----WCANCKMVKPMLANVE------------YTYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECC----CCHhHHHHHHHHHHHh------------heEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 6899999 9999999999987653 347899999999999999999999998
No 77
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.82 E-value=2.4e-08 Score=99.90 Aligned_cols=102 Identities=18% Similarity=0.245 Sum_probs=74.3
Q ss_pred EEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEE-----------------
Q psy8429 49 LRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFF----------------- 111 (314)
Q Consensus 49 I~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F----------------- 111 (314)
+.+.|.+-+...++ ++.+++|.|||+ ||++|+...|+++++++.+.. +++.+
T Consensus 41 f~l~D~dG~~v~ls--kGKpVvV~FWAT----WCppCk~emP~L~eL~~e~k~-----~~v~VI~Vs~~~~~~e~~~~~~ 109 (521)
T PRK14018 41 LKTADNRPASVYLK--KDKPTLIKFWAS----WCPLCLSELGETEKWAQDAKF-----SSANLITVASPGFLHEKKDGDF 109 (521)
T ss_pred eEeecCCCceeecc--CCCEEEEEEEcC----CCHHHHHHHHHHHHHHHHhcc-----CCeEEEEEecccccccccHHHH
Confidence 34444333344332 456799999999 999999999999999998852 12222
Q ss_pred -----------EEEECCCCcchHHhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHH
Q psy8429 112 -----------ILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIA 166 (314)
Q Consensus 112 -----------~~vD~~~~~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~ 166 (314)
..+++|++.++.+.++++++|+.+++.++|+. .....|..+.+++.++|+
T Consensus 110 ~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkI-----V~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 110 QKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDV-----QRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeE-----EEEEeCCCCHHHHHHHHH
Confidence 24566778889999999999999888665543 233357788999999987
No 78
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.82 E-value=8e-08 Score=79.47 Aligned_cols=110 Identities=7% Similarity=0.092 Sum_probs=86.0
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC
Q psy8429 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (314)
Q Consensus 47 ~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~ 126 (314)
|--.++.++.+.++. .++ ..+++| +.+|.. ++-+....=..+++|++|.. +++.|+++|+|+++++.++|
T Consensus 18 g~~~~~~~~~~~~~~-~~~--~~vl~~-~gdp~r-~~E~~D~avvleELa~e~~~-----~~v~~akVDiD~~~~LA~~f 87 (132)
T PRK11509 18 GWTPVSESRLDDWLT-QAP--DGVVLL-SSDPKR-TPEVSDNPVMIGELLREFPD-----YTWQVAIADLEQSEAIGDRF 87 (132)
T ss_pred CCCccccccHHHHHh-CCC--cEEEEe-CCCCCc-CCccccHHHHHHHHHHHhcC-----CceEEEEEECCCCHHHHHHc
Confidence 666788899999974 433 244444 445543 46688889999999999852 45999999999999999999
Q ss_pred CcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCc
Q psy8429 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ 172 (314)
Q Consensus 127 ~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~ 172 (314)
||+++||+++|++|. . .+...|..+.+++.+||++.+..+
T Consensus 88 gV~siPTLl~FkdGk-~-----v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 88 GVFRFPATLVFTGGN-Y-----RGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred CCccCCEEEEEECCE-E-----EEEEeCcCCHHHHHHHHHHHhcCc
Confidence 999999999999973 2 233356788999999999988754
No 79
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.78 E-value=5.1e-08 Score=83.49 Aligned_cols=88 Identities=14% Similarity=0.240 Sum_probs=69.7
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECC----------------------CCcchHH
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD----------------------EGSDVFQ 124 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~----------------------~~~~lf~ 124 (314)
..+++.|+++ ||++|+...|.+.++++++.+ .++.+..++.+ ++.++.+
T Consensus 62 k~~~l~f~a~----~C~~C~~~~~~l~~~~~~~~~-----~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 132 (173)
T PRK03147 62 KGVFLNFWGT----WCKPCEKEMPYMNELYPKYKE-----KGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVID 132 (173)
T ss_pred CEEEEEEECC----cCHHHHHHHHHHHHHHHHhhc-----CCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHH
Confidence 3588999999 999999999999999999863 34666667654 3568889
Q ss_pred hCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhh
Q psy8429 125 MLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 125 ~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~ 168 (314)
+++++++|+.+++.++|+. .....|..+.+++.+++++.
T Consensus 133 ~~~v~~~P~~~lid~~g~i-----~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 133 AYGVGPLPTTFLIDKDGKV-----VKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred HcCCCCcCeEEEECCCCcE-----EEEEeCCCCHHHHHHHHHHh
Confidence 9999999999999877543 22335677889999998754
No 80
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.76 E-value=3.1e-08 Score=81.40 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=59.8
Q ss_pred ChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHH-H--HHHHHHhccccCCCCcEEEEEEECCCCcchHHh---
Q psy8429 52 DGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDE-Y--TIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM--- 125 (314)
Q Consensus 52 t~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pe-f--e~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~--- 125 (314)
+++.+++.. .++.+++++|+|+ ||+.|+.++++ | .++++... +...++++|.++++++.++
T Consensus 4 ~~eal~~Ak---~~~KpVll~f~a~----WC~~Ck~me~~~f~~~~V~~~l~------~~fv~VkvD~~~~~~~~~~~~~ 70 (124)
T cd02955 4 GEEAFEKAR---REDKPIFLSIGYS----TCHWCHVMEHESFEDEEVAAILN------ENFVPIKVDREERPDVDKIYMN 70 (124)
T ss_pred CHHHHHHHH---HcCCeEEEEEccC----CCHhHHHHHHHccCCHHHHHHHh------CCEEEEEEeCCcCcHHHHHHHH
Confidence 345555543 2356799999999 99999999874 3 34665543 4689999999998887653
Q ss_pred -----CCcccCceEEEecCCCCC
Q psy8429 126 -----LRLNTAPIFMHFPAKGKP 143 (314)
Q Consensus 126 -----~~v~svPtl~~f~p~~~~ 143 (314)
+++.+.|+++++.|.|+.
T Consensus 71 ~~~~~~~~~G~Pt~vfl~~~G~~ 93 (124)
T cd02955 71 AAQAMTGQGGWPLNVFLTPDLKP 93 (124)
T ss_pred HHHHhcCCCCCCEEEEECCCCCE
Confidence 589999999999987654
No 81
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.74 E-value=1.2e-07 Score=80.59 Aligned_cols=86 Identities=12% Similarity=0.223 Sum_probs=60.9
Q ss_pred EEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC----------CcchH-HhC---CcccCceE
Q psy8429 69 AIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE----------GSDVF-QML---RLNTAPIF 134 (314)
Q Consensus 69 vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~----------~~~lf-~~~---~v~svPtl 134 (314)
.++.|||+ ||++|++..|.++++++.|. -.+....+|-+. .++.. +.+ ++.++|+.
T Consensus 53 ~lvnFWAs----WCppCr~e~P~L~~l~~~~~------~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt 122 (153)
T TIGR02738 53 ALVFFYQS----TCPYCHQFAPVLKRFSQQFG------LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPAT 122 (153)
T ss_pred EEEEEECC----CChhHHHHHHHHHHHHHHcC------CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeE
Confidence 58999999 99999999999999998873 234444444221 12333 344 88999999
Q ss_pred EEecCCCCCCCCCccceeecccCHHHHHHHHHhh
Q psy8429 135 MHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 135 ~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~ 168 (314)
+++.+.|+. .+....|..+.+++.+.+.+.
T Consensus 123 ~LID~~G~~----i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 123 FLVNVNTRK----AYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EEEeCCCCE----EEEEeecccCHHHHHHHHHHh
Confidence 999886432 123335778888888888764
No 82
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.73 E-value=5.3e-08 Score=90.36 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=68.0
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC---------CcchHHhCCcccCceEEE
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE---------GSDVFQMLRLNTAPIFMH 136 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~---------~~~lf~~~~v~svPtl~~ 136 (314)
+.+++++|+|+ ||++|+.+.|.++++++.|. -.+..+.+|-+. +.++.+++||+++|++++
T Consensus 166 ~k~~Lv~F~As----wCp~C~~~~P~L~~la~~yg------~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 166 KKSGLFFFFKS----DCPYCHQQAPILQAFEDRYG------IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred CCeEEEEEECC----CCccHHHHhHHHHHHHHHcC------cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 34689999999 99999999999999999874 235555554432 357889999999999999
Q ss_pred ecCCCCCCCCCccceeecccCHHHHHHHHHhhcC
Q psy8429 137 FPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (314)
Q Consensus 137 f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~ 170 (314)
+.++++. ......|..+.++|.+.+...+.
T Consensus 236 v~~~~~~----v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 236 ADPDPNQ----FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EECCCCE----EEEEEeCCCCHHHHHHHHHHHhc
Confidence 9984221 11222356788999998876654
No 83
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.71 E-value=6.7e-08 Score=72.39 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=54.6
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecCCCCCCCCCccc
Q psy8429 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLD 150 (314)
Q Consensus 71 V~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~ 150 (314)
+.|+|+ ||++|+.+.|.++++++++. .++.|.++| +++...++++.++|++++ +| +. .
T Consensus 3 i~~~a~----~C~~C~~~~~~~~~~~~e~~------~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G-~~-----~- 60 (76)
T TIGR00412 3 IQIYGT----GCANCQMTEKNVKKAVEELG------IDAEFEKVT---DMNEILEAGVTATPGVAV--DG-EL-----V- 60 (76)
T ss_pred EEEECC----CCcCHHHHHHHHHHHHHHcC------CCeEEEEeC---CHHHHHHcCCCcCCEEEE--CC-EE-----E-
Confidence 678899 99999999999999999875 458888887 244478899999999998 43 32 1
Q ss_pred eeecc-cCHHHHHHHH
Q psy8429 151 IQRVG-YSAEAIVKWI 165 (314)
Q Consensus 151 ~~~~~-~~a~~l~~fI 165 (314)
+ .|. .+.+++.+++
T Consensus 61 ~-~G~~~~~~~l~~~l 75 (76)
T TIGR00412 61 I-MGKIPSKEEIKEIL 75 (76)
T ss_pred E-EeccCCHHHHHHHh
Confidence 1 232 3457777765
No 84
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.69 E-value=3.6e-08 Score=78.40 Aligned_cols=86 Identities=20% Similarity=0.303 Sum_probs=59.9
Q ss_pred CCccEEEEEeeCCCCCCCccchhhHHHHHHHH---HHhccccCCCCcEEEEEEECCCC--------------------cc
Q psy8429 65 RNYSAIVMFTALAPQRNCHICVSASDEYTIVA---NSFRYSQMYSNKLFFILVDFDEG--------------------SD 121 (314)
Q Consensus 65 r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA---~s~~~~~~~~~~v~F~~vD~~~~--------------------~~ 121 (314)
++.+++++|+++ ||+.|+.+.++..... +... +++.+..+|+++. ++
T Consensus 4 ~~k~~v~~F~~~----~C~~C~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (112)
T PF13098_consen 4 NGKPIVVVFTDP----WCPYCKKLEKELFPDNDVARYLK------DDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKE 73 (112)
T ss_dssp TSSEEEEEEE-T----T-HHHHHHHHHHHHHHHHHCEEH------CECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHH
T ss_pred CCCEEEEEEECC----CCHHHHHHHHHHHHHHHHHHHhh------cCeEEEEEecCCcccccccccccccchhhhHHHHH
Confidence 355689999999 9999999999998643 3332 3578888888863 35
Q ss_pred hHHhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 122 VFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 122 lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
+.+++++++.||++++.+.|+. .....|..++++|.+++
T Consensus 74 l~~~~~v~gtPt~~~~d~~G~~-----v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 74 LAQRYGVNGTPTIVFLDKDGKI-----VYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHTT--SSSEEEECTTTSCE-----EEEEESS--HHHHHHHH
T ss_pred HHHHcCCCccCEEEEEcCCCCE-----EEEecCCCCHHHHHhhC
Confidence 8999999999999999755442 23335778899998875
No 85
>KOG0913|consensus
Probab=98.66 E-value=9.1e-09 Score=91.55 Aligned_cols=105 Identities=14% Similarity=0.195 Sum_probs=88.6
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC
Q psy8429 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (314)
Q Consensus 47 ~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~ 126 (314)
.++.+|++|+.+++. + + .+++|.|+ ||+.|+.++|+++..|. +.. +-.+..++||+..|+.+..+|
T Consensus 25 ~~~~~~eenw~~~l~-g--e--wmi~~~ap----~~psc~~~~~~~~~~a~-~s~----dL~v~va~VDvt~npgLsGRF 90 (248)
T KOG0913|consen 25 KLTRIDEENWKELLT-G--E--WMIEFGAP----WCPSCSDLIPHLENFAT-VSL----DLGVKVAKVDVTTNPGLSGRF 90 (248)
T ss_pred eeEEecccchhhhhc-h--H--HHHHhcCC----CCccccchHHHHhccCC-ccC----CCceeEEEEEEEeccccceee
Confidence 688999999999863 4 2 57899999 99999999999998884 432 256999999999999999999
Q ss_pred CcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCc
Q psy8429 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ 172 (314)
Q Consensus 127 ~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~ 172 (314)
-+...||+.+.+.| . +....+.++..+++.|++.+--..
T Consensus 91 ~vtaLptIYHvkDG-e------FrrysgaRdk~dfisf~~~r~w~~ 129 (248)
T KOG0913|consen 91 LVTALPTIYHVKDG-E------FRRYSGARDKNDFISFEEHREWQS 129 (248)
T ss_pred EEEecceEEEeecc-c------cccccCcccchhHHHHHHhhhhhc
Confidence 99999999999986 3 334468999999999998775433
No 86
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.60 E-value=1.2e-07 Score=78.23 Aligned_cols=71 Identities=11% Similarity=0.224 Sum_probs=53.6
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC-------------------------c
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG-------------------------S 120 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~-------------------------~ 120 (314)
+..++|.|+|+ ||++|++..|+++++++.+... .+++.+.-++++++ .
T Consensus 17 Gk~vll~F~at----wC~~C~~~~p~l~~l~~~~~~~---~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 89 (132)
T cd02964 17 GKTVGLYFSAS----WCPPCRAFTPKLVEFYEKLKEE---GKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRE 89 (132)
T ss_pred CCEEEEEEECC----CCchHHHHHHHHHHHHHHHhhc---CCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHH
Confidence 45699999999 9999999999999999988631 12355555555443 2
Q ss_pred chHHhCCcccCceEEEecCCCCC
Q psy8429 121 DVFQMLRLNTAPIFMHFPAKGKP 143 (314)
Q Consensus 121 ~lf~~~~v~svPtl~~f~p~~~~ 143 (314)
.+.+.++++++|+.+++.++|+.
T Consensus 90 ~~~~~~~v~~iPt~~lid~~G~i 112 (132)
T cd02964 90 LLEKQFKVEGIPTLVVLKPDGDV 112 (132)
T ss_pred HHHHHcCCCCCCEEEEECCCCCE
Confidence 45567999999999999876543
No 87
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.60 E-value=1.9e-07 Score=76.49 Aligned_cols=71 Identities=14% Similarity=0.315 Sum_probs=53.6
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC------------------------cc
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG------------------------SD 121 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~------------------------~~ 121 (314)
+..++|.|+|+ ||++|++..|+++++++.+.+. .+++.+.-++.|++ ..
T Consensus 18 gk~vll~Fwa~----wC~~C~~~~p~l~~~~~~~~~~---~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T cd03009 18 GKTVGLYFSAS----WCPPCRAFTPKLVEFYEKLKES---GKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSR 90 (131)
T ss_pred CcEEEEEEECC----CChHHHHHhHHHHHHHHHHHhc---CCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHH
Confidence 34699999999 9999999999999999888631 11344444444332 35
Q ss_pred hHHhCCcccCceEEEecCCCCC
Q psy8429 122 VFQMLRLNTAPIFMHFPAKGKP 143 (314)
Q Consensus 122 lf~~~~v~svPtl~~f~p~~~~ 143 (314)
+.++|+++++|+++++.++|+.
T Consensus 91 ~~~~~~v~~~P~~~lid~~G~i 112 (131)
T cd03009 91 LNRTFKIEGIPTLIILDADGEV 112 (131)
T ss_pred HHHHcCCCCCCEEEEECCCCCE
Confidence 7789999999999999877653
No 88
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.53 E-value=2.2e-07 Score=71.85 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=52.2
Q ss_pred EEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEE
Q psy8429 69 AIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMH 136 (314)
Q Consensus 69 vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~ 136 (314)
-+..|+++ ||++|+...+.++++++.+ +++.|..+|.++.++.+++|+|.++|++++
T Consensus 15 ~i~~F~~~----~C~~C~~~~~~~~~l~~~~-------~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 15 NFETYVSL----SCHNCPDVVQALNLMAVLN-------PNIEHEMIDGALFQDEVEERGIMSVPAIFL 71 (89)
T ss_pred EEEEEECC----CCCCcHHHHHHHHHHHHHC-------CCceEEEEEhHhCHHHHHHcCCccCCEEEE
Confidence 47789999 9999999999999999765 469999999999999999999999999974
No 89
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.51 E-value=2.5e-07 Score=80.02 Aligned_cols=96 Identities=10% Similarity=-0.028 Sum_probs=67.7
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhcc------ccC--------CCCcEEEEEEECCCCcchHHhCCcccC
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRY------SQM--------YSNKLFFILVDFDEGSDVFQMLRLNTA 131 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~------~~~--------~~~~v~F~~vD~~~~~~lf~~~~v~sv 131 (314)
+..++++||++ ||++|++..|.++++++.-.. +.. ...++-|-.+..|.+.++.++|++.++
T Consensus 63 gk~vll~F~a~----wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 63 GKPVLLNVWAS----WCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCEEEEEEECC----cCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 34689999999 999999999999998765100 000 011122334556777888999999999
Q ss_pred ceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcC
Q psy8429 132 PIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (314)
Q Consensus 132 Ptl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~ 170 (314)
|+.+++.++|+. .+ ...|..+.+++.+++.++++
T Consensus 139 P~~~~id~~G~i----~~-~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 139 PETFLVDGNGVI----LY-RHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CeEEEEcCCceE----EE-EEeccCCHHHHHHHHHHHhh
Confidence 988877665543 12 22466789999999988764
No 90
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.50 E-value=4.2e-07 Score=76.71 Aligned_cols=74 Identities=14% Similarity=0.198 Sum_probs=54.3
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccC--CCCcEEEEEEECCCC------------------------
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQM--YSNKLFFILVDFDEG------------------------ 119 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~--~~~~v~F~~vD~~~~------------------------ 119 (314)
+..+++.|+|+ ||++|++..|.++++.+.+.+.++ .++++.+.-|+.+++
T Consensus 25 gk~vlL~FwAs----WCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~ 100 (146)
T cd03008 25 NRVLLLFFGAV----VSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEF 100 (146)
T ss_pred CCEEEEEEECC----CChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchH
Confidence 45799999999 999999999999998887753210 112355555554432
Q ss_pred -cchHHhCCcccCceEEEecCCCCC
Q psy8429 120 -SDVFQMLRLNTAPIFMHFPAKGKP 143 (314)
Q Consensus 120 -~~lf~~~~v~svPtl~~f~p~~~~ 143 (314)
.++.++|++.++|+.+++.+.|+.
T Consensus 101 ~~~l~~~y~v~~iPt~vlId~~G~V 125 (146)
T cd03008 101 RRELEAQFSVEELPTVVVLKPDGDV 125 (146)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCcE
Confidence 257788999999999999887654
No 91
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.50 E-value=1.4e-06 Score=76.28 Aligned_cols=87 Identities=9% Similarity=0.040 Sum_probs=61.7
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECC-----------------------CCcch
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD-----------------------EGSDV 122 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~-----------------------~~~~l 122 (314)
+.++++.|||+ ||++|++..|+++++++. ++.+.-++.+ .+.++
T Consensus 68 gk~vvv~Fwat----wC~~C~~e~p~l~~l~~~---------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 134 (185)
T PRK15412 68 GKPVLLNVWAT----WCPTCRAEHQYLNQLSAQ---------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGML 134 (185)
T ss_pred CCEEEEEEECC----CCHHHHHHHHHHHHHHHc---------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccH
Confidence 44689999999 999999999999988652 1333333333 33445
Q ss_pred HHhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcC
Q psy8429 123 FQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (314)
Q Consensus 123 f~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~ 170 (314)
.+.|++.++|+.+++.+.|+.. ....|..+.+++.+++++.+.
T Consensus 135 ~~~~gv~~~P~t~vid~~G~i~-----~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 135 GLDLGVYGAPETFLIDGNGIIR-----YRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred HHhcCCCcCCeEEEECCCceEE-----EEEecCCCHHHHHHHHHHHHH
Confidence 6689999999888887765541 222467788888888876653
No 92
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.47 E-value=7.8e-07 Score=69.28 Aligned_cols=67 Identities=16% Similarity=0.288 Sum_probs=59.0
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC-----------------------cchH
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG-----------------------SDVF 123 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~-----------------------~~lf 123 (314)
.+++++|+++ ||++|+...|.+.++.+++.+ +++.++.++.+.+ +++.
T Consensus 20 k~~ll~f~~~----~C~~C~~~~~~l~~~~~~~~~-----~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (116)
T cd02966 20 KVVLVNFWAS----WCPPCRAEMPELEALAKEYKD-----DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELA 90 (116)
T ss_pred CEEEEEeecc----cChhHHHHhHHHHHHHHHhCC-----CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHH
Confidence 4689999999 999999999999999998852 4689999999886 8899
Q ss_pred HhCCcccCceEEEecCCCC
Q psy8429 124 QMLRLNTAPIFMHFPAKGK 142 (314)
Q Consensus 124 ~~~~v~svPtl~~f~p~~~ 142 (314)
+.+++.++|+++++.++|+
T Consensus 91 ~~~~~~~~P~~~l~d~~g~ 109 (116)
T cd02966 91 KAYGVRGLPTTFLIDRDGR 109 (116)
T ss_pred HhcCcCccceEEEECCCCc
Confidence 9999999999999987654
No 93
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.44 E-value=1.6e-06 Score=69.73 Aligned_cols=100 Identities=12% Similarity=0.209 Sum_probs=74.0
Q ss_pred hHHHHHH-cCCCCccEEEEEeeCCCCCCCccchhhHHH-H--HHHHHHhccccCCCCcEEEEEEECCC--CcchHHhCCc
Q psy8429 55 KYKEYIK-NGPRNYSAIVMFTALAPQRNCHICVSASDE-Y--TIVANSFRYSQMYSNKLFFILVDFDE--GSDVFQMLRL 128 (314)
Q Consensus 55 nf~~~v~-~~~r~y~vvV~FtA~~~~~~C~~C~~~~pe-f--e~vA~s~~~~~~~~~~v~F~~vD~~~--~~~lf~~~~v 128 (314)
+|++.+. +..++..++|+|+++ ||.+|+.+..+ | +.|.+... +...+.++|.++ ..++.+.+++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~----~c~~c~~~~~~vl~~~~v~~~l~------~~~v~~~~d~~~~e~~~~~~~~~~ 74 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSE----DEFDSQVLNRDLWSNESVKEFIR------ENFIFWQCDIDSSEGQRFLQSYKV 74 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecC----CcchHHHHHHHHcCCHHHHHHHH------hCEEEEEecCCCccHHHHHHHhCc
Confidence 4555552 334567899999999 99999999764 2 34554443 358888899985 6789999999
Q ss_pred ccCceEEEecC-CCCCCCCCccceeecccCHHHHHHHHHhhc
Q psy8429 129 NTAPIFMHFPA-KGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (314)
Q Consensus 129 ~svPtl~~f~p-~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~ 169 (314)
.++|++.++.| +|+. .....|..+++++.+-+++..
T Consensus 75 ~~~P~~~~i~~~~g~~-----l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 75 DKYPHIAIIDPRTGEV-----LKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred cCCCeEEEEeCccCcE-----eEEEcCCCCHHHHHHHHHHHH
Confidence 99999999988 4432 233357788999998887754
No 94
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.41 E-value=4.1e-06 Score=67.84 Aligned_cols=113 Identities=14% Similarity=0.238 Sum_probs=80.7
Q ss_pred CCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC-----Cc
Q psy8429 46 KAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE-----GS 120 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~-----~~ 120 (314)
.|.+.|++-+|++.+. |..+++|-|... =|--+-+.+|.++|++-.+ .++++.++.|-+.+ |.
T Consensus 4 ~G~v~LD~~tFdKvi~---kf~~~LVKFD~a------yPyGeKhd~F~~~A~e~~~---~~~dLLvAeVGikDYGek~N~ 71 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIP---KFKYVLVKFDVA------YPYGEKHDAFKKLAKEASA---SSDDLLVAEVGIKDYGEKENM 71 (126)
T ss_dssp TTSEEESTTHHHHHGG---GSSEEEEEEEES------S--CHHHHHHHHHHHHHHC---C-SSEEEEEEECBSSSS-CCH
T ss_pred Cceeeccceehhheec---cCceEEEEEecc------CCCcchHHHHHHHHHHHhc---CCCceEEEEeCcccccchhHH
Confidence 5789999999999983 345689999875 3456779999999944321 24679999998887 78
Q ss_pred chHHhCCc--ccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCcc
Q psy8429 121 DVFQMLRL--NTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI 173 (314)
Q Consensus 121 ~lf~~~~v--~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~i 173 (314)
++.++|++ +++|.+.+|..+ . .++..|.. .++.+++.|..|+++++++.+
T Consensus 72 ~Laery~i~ke~fPv~~LF~~~-~-~~pv~~p~-~~~~t~~~l~~fvk~~t~~yi 123 (126)
T PF07912_consen 72 ELAERYKIDKEDFPVIYLFVGD-K-EEPVRYPF-DGDVTADNLQRFVKSNTGLYI 123 (126)
T ss_dssp HHHHHTT-SCCC-SEEEEEESS-T-TSEEEE-T-CS-S-HHHHHHHHHHTSS--T
T ss_pred HHHHHhCCCcccCCEEEEecCC-C-CCCccCCc-cCCccHHHHHHHHHhCCCeee
Confidence 99999999 679999999944 2 12222321 456899999999999999765
No 95
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.39 E-value=1.2e-06 Score=71.28 Aligned_cols=73 Identities=16% Similarity=0.096 Sum_probs=52.4
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhcc--------ccC-------CCCcEEEEEEECCCCcchHHhCCccc
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRY--------SQM-------YSNKLFFILVDFDEGSDVFQMLRLNT 130 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~--------~~~-------~~~~v~F~~vD~~~~~~lf~~~~v~s 130 (314)
+.+++|.|+|+ ||++|++..|+++++++.+.- +.. ...++-|..+.+|++.++.+.|++.+
T Consensus 25 gk~vvv~F~a~----~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~ 100 (127)
T cd03010 25 GKPYLLNVWAS----WCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG 100 (127)
T ss_pred CCEEEEEEEcC----cCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC
Confidence 34689999999 999999999999999887620 000 01122233455667788999999999
Q ss_pred CceEEEecCCCC
Q psy8429 131 APIFMHFPAKGK 142 (314)
Q Consensus 131 vPtl~~f~p~~~ 142 (314)
+|+.+++.+.|+
T Consensus 101 ~P~~~~ld~~G~ 112 (127)
T cd03010 101 VPETFLIDGDGI 112 (127)
T ss_pred CCeEEEECCCce
Confidence 997777765554
No 96
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.34 E-value=2.4e-06 Score=68.90 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=58.1
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhcc-----ccC---------CCCcEEEEEEECCCCcchHHhCCcccCc
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRY-----SQM---------YSNKLFFILVDFDEGSDVFQMLRLNTAP 132 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~-----~~~---------~~~~v~F~~vD~~~~~~lf~~~~v~svP 132 (314)
..+++.|+++ ||++|+.+.|.++++++++.- +.. ...++.|- +-.+++.++.+++++.++|
T Consensus 21 k~~vl~F~~~----~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~i~~~P 95 (123)
T cd03011 21 KPVLVYFWAT----WCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFP-VINDPDGVISARWGVSVTP 95 (123)
T ss_pred CEEEEEEECC----cChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCcc-EEECCCcHHHHhCCCCccc
Confidence 3588999999 999999999999999887531 000 00012221 2234667899999999999
Q ss_pred eEEEecCCCCCCCCCccceeecccCHHHHHH
Q psy8429 133 IFMHFPAKGKPKPSDTLDIQRVGYSAEAIVK 163 (314)
Q Consensus 133 tl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~ 163 (314)
+++++.+++ . .+ ...|-.+.+++.+
T Consensus 96 ~~~vid~~g-i----~~-~~~g~~~~~~~~~ 120 (123)
T cd03011 96 AIVIVDPGG-I----VF-VTTGVTSEWGLRL 120 (123)
T ss_pred EEEEEcCCC-e----EE-EEeccCCHHHHHh
Confidence 999999874 3 11 2235556666654
No 97
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.34 E-value=4.2e-07 Score=68.81 Aligned_cols=64 Identities=20% Similarity=0.316 Sum_probs=49.5
Q ss_pred CCccEEEEEeeCCCCCCCccchhhHHHH---HHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecC
Q psy8429 65 RNYSAIVMFTALAPQRNCHICVSASDEY---TIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPA 139 (314)
Q Consensus 65 r~y~vvV~FtA~~~~~~C~~C~~~~pef---e~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p 139 (314)
++.+++|+|+|+ ||+.|+.++.++ +++.+.+. ++..+.++|.++...-.+ +.-+++|+++++.|
T Consensus 16 ~~kpvlv~f~a~----wC~~C~~l~~~~~~~~~v~~~~~------~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 16 EGKPVLVDFGAD----WCPPCKKLEREVFSDPEVQEALN------KNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLDP 82 (82)
T ss_dssp HTSEEEEEEETT----TTHHHHHHHHHTTTSHHHHHHHH------HCSEEEEEETTTHHHHHH-HHHCSSSEEEEEET
T ss_pred cCCCEEEEEECC----CCHhHHHHHHHHcCCHHHHHHHH------CCEEEEEEEcCCCChhHH-hCCccCCEEEEeCC
Confidence 456799999999 999999999988 56666554 469999999988543322 22267999999875
No 98
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.30 E-value=3.2e-06 Score=73.68 Aligned_cols=92 Identities=11% Similarity=0.163 Sum_probs=65.8
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECC----------C-CcchHHhCCc--ccCc
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD----------E-GSDVFQMLRL--NTAP 132 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~----------~-~~~lf~~~~v--~svP 132 (314)
+|. +|.||++ ||++|++..|.++++++++. -.+.-+.+|-+ + ...+.+.|++ .++|
T Consensus 70 d~~-lV~Fwas----wCp~C~~e~P~L~~l~~~~g------~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iP 138 (181)
T PRK13728 70 DWK-VVLFMQG----HCPYCHQFDPVLKQLAQQYG------FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATP 138 (181)
T ss_pred Hce-EEEEECC----CCHhHHHHHHHHHHHHHHcC------CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCC
Confidence 344 6779999 99999999999999999873 22333333311 1 1236678884 6999
Q ss_pred eEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCc
Q psy8429 133 IFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ 172 (314)
Q Consensus 133 tl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~ 172 (314)
+.+++.+.|+. .+....|..+.+++.+.+.+.++..
T Consensus 139 ttfLId~~G~i----~~~~~~G~~~~~~L~~~I~~ll~~~ 174 (181)
T PRK13728 139 TTFLVNVNTLE----ALPLLQGATDAAGFMARMDTVLQMY 174 (181)
T ss_pred eEEEEeCCCcE----EEEEEECCCCHHHHHHHHHHHHhhh
Confidence 99999877543 1233467889999999998887653
No 99
>KOG0914|consensus
Probab=98.29 E-value=3.3e-06 Score=74.63 Aligned_cols=84 Identities=21% Similarity=0.244 Sum_probs=70.1
Q ss_pred eEEe-ChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC
Q psy8429 48 VLRF-DGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (314)
Q Consensus 48 VI~L-t~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~ 126 (314)
+-.+ +++.+++.+. +++.-++++.|.|. |.+-|+.+.|.|.+++..|.. +.+.|+++|+..-+++.++|
T Consensus 126 ikyf~~~q~~deel~-rnk~t~WlIeFfa~----ws~~Cv~~spvfaeLS~kyn~-----~~lkFGkvDiGrfpd~a~kf 195 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELD-RNKRTYWLIEFFAC----WSPKCVRFSPVFAELSIKYNN-----NLLKFGKVDIGRFPDVAAKF 195 (265)
T ss_pred eeeecchhhHHHHhc-cCCceEEEEEEEee----cChhhcccccccHHHHHHhCC-----CCCcccceeeccCcChHHhe
Confidence 5556 5566777764 55555577888888 999999999999999999963 57999999999999999999
Q ss_pred Ccc------cCceEEEecCCC
Q psy8429 127 RLN------TAPIFMHFPAKG 141 (314)
Q Consensus 127 ~v~------svPtl~~f~p~~ 141 (314)
+|+ ..||+.+|..|.
T Consensus 196 ris~s~~srQLPT~ilFq~gk 216 (265)
T KOG0914|consen 196 RISLSPGSRQLPTYILFQKGK 216 (265)
T ss_pred eeccCcccccCCeEEEEccch
Confidence 997 489999999873
No 100
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.28 E-value=1.4e-05 Score=68.72 Aligned_cols=119 Identities=15% Similarity=0.309 Sum_probs=89.0
Q ss_pred HHHHHHHHhhhhCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEE
Q psy8429 33 GDRVLHLSEMNAKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFI 112 (314)
Q Consensus 33 ~~~~~~L~~l~~~~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~ 112 (314)
.+.+.+..+...-+.|.++|++|++++. ++++ ..++++|... .......+...++.+|+++. +++.|+
T Consensus 64 ~~~l~~fI~~~~~P~v~~~t~~n~~~~~-~~~~-~~~~~~~~~~----~~~~~~~~~~~l~~~a~~~~------~~~~f~ 131 (184)
T PF13848_consen 64 PEELKKFIKKNSFPLVPELTPENFEKLF-SSPK-PPVLILFDNK----DNESTEAFKKELQDIAKKFK------GKINFV 131 (184)
T ss_dssp HHHHHHHHHHHSSTSCEEESTTHHHHHH-STSS-EEEEEEEETT----THHHHHHHHHHHHHHHHCTT------TTSEEE
T ss_pred HHHHHHHHHHhccccccccchhhHHHHh-cCCC-ceEEEEEEcC----CchhHHHHHHHHHHHHHhcC------CeEEEE
Confidence 3444444443334569999999999986 4433 2366666655 56678999999999999986 579999
Q ss_pred EEECCCCcchHHhCCcc--cCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHh
Q psy8429 113 LVDFDEGSDVFQMLRLN--TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (314)
Q Consensus 113 ~vD~~~~~~lf~~~~v~--svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~ 167 (314)
.+|.+..++..+.++++ ..|.+.++.+.... ..+ ...+..+++.+.+|+++
T Consensus 132 ~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~---~~~-~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 132 YVDADDFPRLLKYFGIDEDDLPALVIFDSNKGK---YYY-LPEGEITPESIEKFLND 184 (184)
T ss_dssp EEETTTTHHHHHHTTTTTSSSSEEEEEETTTSE---EEE---SSCGCHHHHHHHHHH
T ss_pred EeehHHhHHHHHHcCCCCccCCEEEEEECCCCc---EEc-CCCCCCCHHHHHHHhcC
Confidence 99999999999999999 99999999865211 112 12567889999999974
No 101
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.27 E-value=4e-06 Score=77.52 Aligned_cols=109 Identities=10% Similarity=0.169 Sum_probs=77.5
Q ss_pred CeEEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh
Q psy8429 47 AVLRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 47 ~VI~Lt~-~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~ 125 (314)
.|.++++ +.|-+.+...+++-.|||.||-+ .++.|+.+...++.+|+.|. .+.|+++..+..+ ....
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~----~~~~C~~mn~~L~~LA~kyp-------~vKFvkI~a~~~~-~~~~ 193 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEP----GFPRCEIMNSCLECLARKYP-------EVKFVKIRASKCP-ASEN 193 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-T----TSCCHHHHHHHHHHHHHH-T-------TSEEEEEEECGCC-TTTT
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeC----CCchHHHHHHHHHHHHHhCC-------ceEEEEEehhccC-cccC
Confidence 4889975 77888775455567799999999 99999999999999999985 5999999998876 7788
Q ss_pred CCcccCceEEEecCCCCCC-CCCcc-ceeecccCHHHHHHHHHhh
Q psy8429 126 LRLNTAPIFMHFPAKGKPK-PSDTL-DIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~-~~~~~-~~~~~~~~a~~l~~fI~~~ 168 (314)
|...++|++++|+.| ... ....+ +.....++++++..||.++
T Consensus 194 f~~~~LPtllvYk~G-~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 194 FPDKNLPTLLVYKNG-DLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp S-TTC-SEEEEEETT-EEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CcccCCCEEEEEECC-EEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 999999999999986 221 00011 1112246789999999876
No 102
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.26 E-value=3.5e-06 Score=91.57 Aligned_cols=91 Identities=13% Similarity=0.207 Sum_probs=69.3
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEE---C------------------------CC
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVD---F------------------------DE 118 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD---~------------------------~~ 118 (314)
+..++|.|||+ ||++|+...|+++++++.|.. +++.+..+. + |.
T Consensus 420 GK~vll~FWAs----WC~pC~~e~P~L~~l~~~y~~-----~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~ 490 (1057)
T PLN02919 420 GKVVILDFWTY----CCINCMHVLPDLEFLEKKYKD-----QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDG 490 (1057)
T ss_pred CCEEEEEEECC----cChhHHhHhHHHHHHHHHcCC-----CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECC
Confidence 45799999999 999999999999999998852 346665552 1 23
Q ss_pred CcchHHhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcC
Q psy8429 119 GSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (314)
Q Consensus 119 ~~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~ 170 (314)
+.++.++|+++++|+.+++.+.|+.. ....|....+++.+++.+.+.
T Consensus 491 ~~~~~~~~~V~~iPt~ilid~~G~iv-----~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 491 DMYLWRELGVSSWPTFAVVSPNGKLI-----AQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred chHHHHhcCCCccceEEEECCCCeEE-----EEEecccCHHHHHHHHHHHHH
Confidence 45678899999999999997665531 223466778888888887644
No 103
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.26 E-value=5.4e-06 Score=63.82 Aligned_cols=66 Identities=18% Similarity=0.416 Sum_probs=49.2
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC-------------------------Ccch
Q psy8429 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE-------------------------GSDV 122 (314)
Q Consensus 68 ~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~-------------------------~~~l 122 (314)
+++++|+|+ ||++|++..|...++.+.+.+ .+++.|.-|..|+ ..++
T Consensus 3 ~~ll~fwa~----~c~~c~~~~~~l~~l~~~~~~----~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 74 (95)
T PF13905_consen 3 PVLLYFWAS----WCPPCKKELPKLKELYKKYKK----KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSEL 74 (95)
T ss_dssp EEEEEEE-T----TSHHHHHHHHHHHHHHHHHTT----TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHH
T ss_pred EEEEEEECC----CCHHHHHHHHHHHHHHHHhCC----CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHH
Confidence 588999999 999999999999999999972 2345555555444 2356
Q ss_pred HHhCCcccCceEEEecCCC
Q psy8429 123 FQMLRLNTAPIFMHFPAKG 141 (314)
Q Consensus 123 f~~~~v~svPtl~~f~p~~ 141 (314)
.+.++++++|++++..+.|
T Consensus 75 ~~~~~i~~iP~~~lld~~G 93 (95)
T PF13905_consen 75 LKKYGINGIPTLVLLDPDG 93 (95)
T ss_dssp HHHTT-TSSSEEEEEETTS
T ss_pred HHHCCCCcCCEEEEECCCC
Confidence 7888899999999888765
No 104
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.24 E-value=3.2e-06 Score=84.63 Aligned_cols=99 Identities=11% Similarity=0.191 Sum_probs=74.2
Q ss_pred hHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHH-HHHHHhccccCCCCcEEEEEEECCCC----cchHHhCCcc
Q psy8429 55 KYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYT-IVANSFRYSQMYSNKLFFILVDFDEG----SDVFQMLRLN 129 (314)
Q Consensus 55 nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe-~vA~s~~~~~~~~~~v~F~~vD~~~~----~~lf~~~~v~ 129 (314)
..++.+. ..|+.+|+++|||. ||..||++++.-= ......+ -.++...++|.++| .++.+++++-
T Consensus 464 ~L~~~la-~~~~~pVmlDfyAd----WCvtCK~~e~~tfsd~~v~~~-----~~~~vlLqaDvT~~~p~~~~lLk~~~~~ 533 (569)
T COG4232 464 ELDQALA-EAKAKPVMLDFYAD----WCVTCKENEKYTFSDPQVQQA-----LQDVVLLQADVTANDPAITALLKRLGVF 533 (569)
T ss_pred HHHHHHH-hCCCCcEEEeeehh----HHHHhHhhhhhccCcHHHHHh-----cCCeEEEEeeecCCCHHHHHHHHHcCCC
Confidence 5566653 44567899999999 9999999988532 1111111 24699999999995 4778999999
Q ss_pred cCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhh
Q psy8429 130 TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 130 svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~ 168 (314)
++|++++|+++|+..+ . . .+-.+++.+.+++++.
T Consensus 534 G~P~~~ff~~~g~e~~--~--l-~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 534 GVPTYLFFGPQGSEPE--I--L-TGFLTADAFLEHLERA 567 (569)
T ss_pred CCCEEEEECCCCCcCc--C--C-cceecHHHHHHHHHHh
Confidence 9999999998765421 1 2 4667999999999875
No 105
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.17 E-value=9e-06 Score=76.52 Aligned_cols=119 Identities=13% Similarity=0.235 Sum_probs=77.1
Q ss_pred hhhhCCCeEEeChhhHHHHHHcCCCCccEE-EEEeeCCCCCCCccchhh---HHHHHHHHHHhccccCCCCcEEEEEEEC
Q psy8429 41 EMNAKKAVLRFDGQKYKEYIKNGPRNYSAI-VMFTALAPQRNCHICVSA---SDEYTIVANSFRYSQMYSNKLFFILVDF 116 (314)
Q Consensus 41 ~l~~~~~VI~Lt~~nf~~~v~~~~r~y~vv-V~FtA~~~~~~C~~C~~~---~pefe~vA~s~~~~~~~~~~v~F~~vD~ 116 (314)
+.=.++.|++||..||++.++ .|.++ ++|+.+ +.-.=..=+++ +-..|..|+-.. +..+-|+.||.
T Consensus 29 ~YDGkDRVi~LneKNfk~~lK----kyd~l~l~yh~p-~~~dk~~qkq~~m~E~~LELaAQVlE-----~~gigfg~VD~ 98 (383)
T PF01216_consen 29 EYDGKDRVIDLNEKNFKRALK----KYDVLVLYYHEP-VESDKVSQKQFQMTELVLELAAQVLE-----DKGIGFGMVDS 98 (383)
T ss_dssp S-SSS--CEEE-TTTHHHHHH----H-SEEEEEEE---STSSHHHHHHHHHHHHHHHHHHHHCG-----GCTEEEEEEET
T ss_pred cCCCccceEEcchhHHHHHHH----hhcEEEEEEecC-CccCHHHHHHHHHHHHHHHHHHHhcc-----ccCcceEEecc
Confidence 333467799999999999875 35555 445544 22221222333 334555555543 35799999999
Q ss_pred CCCcchHHhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCcceee
Q psy8429 117 DEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQIRVF 176 (314)
Q Consensus 117 ~~~~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~i~i~ 176 (314)
....++++++|+.-.+++.+|+.+. .+++ .|.++|+.+.+||-..+.-++++.
T Consensus 99 ~Kd~klAKKLgv~E~~SiyVfkd~~------~IEy-dG~~saDtLVeFl~dl~edPVeiI 151 (383)
T PF01216_consen 99 KKDAKLAKKLGVEEEGSIYVFKDGE------VIEY-DGERSADTLVEFLLDLLEDPVEII 151 (383)
T ss_dssp TTTHHHHHHHT--STTEEEEEETTE------EEEE--S--SHHHHHHHHHHHHSSSEEEE
T ss_pred HHHHHHHHhcCccccCcEEEEECCc------EEEe-cCccCHHHHHHHHHHhcccchhhh
Confidence 9999999999999999999999862 2344 478999999999999988776543
No 106
>smart00594 UAS UAS domain.
Probab=98.15 E-value=1.4e-05 Score=65.14 Aligned_cols=103 Identities=13% Similarity=0.181 Sum_probs=69.6
Q ss_pred hhhHHHHHHc-CCCCccEEEEEeeCCCCCCCccchhhHHHH---HHHHHHhccccCCCCcEEEEEEECCC--CcchHHhC
Q psy8429 53 GQKYKEYIKN-GPRNYSAIVMFTALAPQRNCHICVSASDEY---TIVANSFRYSQMYSNKLFFILVDFDE--GSDVFQML 126 (314)
Q Consensus 53 ~~nf~~~v~~-~~r~y~vvV~FtA~~~~~~C~~C~~~~pef---e~vA~s~~~~~~~~~~v~F~~vD~~~--~~~lf~~~ 126 (314)
..+|++.+.. ..++..++|+|+++ ||..|+.+..+. ++|.+... +...+..+|++. +.++.+++
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~----~c~~c~~~~r~vl~~~~V~~~i~------~~fv~~~~dv~~~eg~~l~~~~ 82 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQ----DSPDSQVFNRDVLCNEAVKSLIR------ENFIFWQVDVDTSEGQRVSQFY 82 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCC----CCchHHHHHHHHccCHHHHHHHH------cCEEEEEecCCChhHHHHHHhc
Confidence 3456666532 23345799999999 999999987642 23333332 358888888877 57899999
Q ss_pred CcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 127 ~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
+++++|++.++.|.+............|..+++++.+++
T Consensus 83 ~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 83 KLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 999999999998764211001112224667889998875
No 107
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.15 E-value=3.3e-06 Score=67.15 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=42.0
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEE-E--CCCCcchHHhCCcccCceEE
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILV-D--FDEGSDVFQMLRLNTAPIFM 135 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~v-D--~~~~~~lf~~~~v~svPtl~ 135 (314)
..+++.|+++ ||++|++..|.++++++.+. +++.+..+ | .++..+..+++++.+.|++.
T Consensus 22 k~vvl~F~~~----wC~~C~~~~p~l~~~~~~~~------~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 22 RPTLLFFLSP----TCPVCKKLLPVIRSIARAEA------DWLDVVLASDGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred CeEEEEEECC----CCcchHhHhHHHHHHHHHhc------CCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence 4688999999 99999999999999988764 23433333 2 22245667777777777653
No 108
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.07 E-value=1.2e-05 Score=58.09 Aligned_cols=69 Identities=22% Similarity=0.379 Sum_probs=52.6
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcc----hHHhCCcccCceEEEecCCCCCCC
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD----VFQMLRLNTAPIFMHFPAKGKPKP 145 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~----lf~~~~v~svPtl~~f~p~~~~~~ 145 (314)
+.+|+++ ||++|+..++.+++ .++.+..+|++++++ +.+.+++.++|++.+. + +.
T Consensus 2 i~lf~~~----~C~~C~~~~~~l~~------------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~-~~-- 60 (74)
T TIGR02196 2 VKVYTTP----WCPPCKKAKEYLTS------------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H-KI-- 60 (74)
T ss_pred EEEEcCC----CChhHHHHHHHHHH------------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C-EE--
Confidence 5689999 99999999887764 247788999998765 4567999999999974 2 21
Q ss_pred CCccceeecccCHHHHHHHHH
Q psy8429 146 SDTLDIQRVGYSAEAIVKWIA 166 (314)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fI~ 166 (314)
..|.+++++.+|++
T Consensus 61 -------~~g~~~~~i~~~i~ 74 (74)
T TIGR02196 61 -------IVGFDPEKLDQLLE 74 (74)
T ss_pred -------EeeCCHHHHHHHhC
Confidence 24467888888763
No 109
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.06 E-value=4e-05 Score=63.36 Aligned_cols=78 Identities=9% Similarity=0.120 Sum_probs=48.5
Q ss_pred hHHHHHH-cCCCCccEEEEEeeCCCCCCCccchhhHHHH---HHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCccc
Q psy8429 55 KYKEYIK-NGPRNYSAIVMFTALAPQRNCHICVSASDEY---TIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNT 130 (314)
Q Consensus 55 nf~~~v~-~~~r~y~vvV~FtA~~~~~~C~~C~~~~pef---e~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~s 130 (314)
+|++-+. +..++.+++|+|++. ||++|+.++..+ +++++... +....+++|.+...+-....+ +.
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sd----wC~~Ck~l~k~~f~~~eV~~~l~------~~Fv~V~l~~d~td~~~~~~g-~~ 79 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLE----DCPHSQALKKAFAEHKEIQKLAQ------EDFIMLNLVHETTDKNLSPDG-QY 79 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCC----cCHhHHHHHHHhhCCHHHHHHHH------hCeEEEEEEeccCCCCcCccC-cc
Confidence 4555442 233466799999999 999999998864 23333222 235555777653211111233 68
Q ss_pred CceEEEecCCCCC
Q psy8429 131 APIFMHFPAKGKP 143 (314)
Q Consensus 131 vPtl~~f~p~~~~ 143 (314)
+|+++++.|.|+.
T Consensus 80 vPtivFld~~g~v 92 (130)
T cd02960 80 VPRIMFVDPSLTV 92 (130)
T ss_pred cCeEEEECCCCCC
Confidence 9999999887543
No 110
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.05 E-value=1.5e-05 Score=54.33 Aligned_cols=60 Identities=20% Similarity=0.323 Sum_probs=50.4
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHH---hCCcccCceEEEecCC
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQ---MLRLNTAPIFMHFPAK 140 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~---~~~v~svPtl~~f~p~ 140 (314)
+++|+++ ||++|++..+.++++ +... +++.+..+|.++..+..+ .+++.++|+++++.++
T Consensus 1 l~~~~~~----~c~~c~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAP----WCPFCQALRPVLAEL-ALLN------KGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECC----CChhHHhhhhHHHHH-HhhC------CCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 3678888 999999999999998 2222 579999999999876655 8999999999999875
No 111
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.04 E-value=2.7e-05 Score=68.36 Aligned_cols=86 Identities=14% Similarity=0.227 Sum_probs=58.8
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEE-------------C-----CCCcchHHhCC
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVD-------------F-----DEGSDVFQMLR 127 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD-------------~-----~~~~~lf~~~~ 127 (314)
+.++++.|+|+ ||++|++..|+++++.+.+. .++.++..| + ..+.++.++|+
T Consensus 74 gk~vvl~F~at----wCp~C~~~lp~l~~~~~~~~------~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~ 143 (189)
T TIGR02661 74 GRPTLLMFTAP----SCPVCDKLFPIIKSIARAEE------TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQ 143 (189)
T ss_pred CCEEEEEEECC----CChhHHHHHHHHHHHHHhcC------CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhcc
Confidence 44689999999 99999999999999886542 234444311 1 12457889999
Q ss_pred cccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHh
Q psy8429 128 LNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (314)
Q Consensus 128 v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~ 167 (314)
++.+|+.+++.+.|+.. +. ......+++.+.+++
T Consensus 144 v~~~P~~~lID~~G~I~----~~--g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 144 VGKIPYGVLLDQDGKIR----AK--GLTNTREHLESLLEA 177 (189)
T ss_pred CCccceEEEECCCCeEE----Ec--cCCCCHHHHHHHHHH
Confidence 99999999887765431 11 112355667777654
No 112
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.01 E-value=2.6e-05 Score=63.49 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=49.9
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEEC---------------------------CCC
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDF---------------------------DEG 119 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~---------------------------~~~ 119 (314)
..+++.|+++ ||++|+...|+++++.+.+.. .++.+.-++. |..
T Consensus 24 k~vvl~F~a~----~C~~C~~~~p~l~~l~~~~~~-----~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~ 94 (126)
T cd03012 24 KVVLLDFWTY----CCINCLHTLPYLTDLEQKYKD-----DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDND 94 (126)
T ss_pred CEEEEEEECC----CCccHHHHHHHHHHHHHHcCc-----CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCc
Confidence 3589999999 999999999999999999863 2344444432 223
Q ss_pred cchHHhCCcccCceEEEecCCCC
Q psy8429 120 SDVFQMLRLNTAPIFMHFPAKGK 142 (314)
Q Consensus 120 ~~lf~~~~v~svPtl~~f~p~~~ 142 (314)
.++.+.|+++++|+.+++.+.|+
T Consensus 95 ~~~~~~~~v~~~P~~~vid~~G~ 117 (126)
T cd03012 95 YATWRAYGNQYWPALYLIDPTGN 117 (126)
T ss_pred hHHHHHhCCCcCCeEEEECCCCc
Confidence 45677788888888888876554
No 113
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.94 E-value=6.6e-05 Score=61.12 Aligned_cols=81 Identities=15% Similarity=0.318 Sum_probs=52.7
Q ss_pred hhHHHHHHcC-CCCccEEEEEeeCC---CCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC-----Cc-chH
Q psy8429 54 QKYKEYIKNG-PRNYSAIVMFTALA---PQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE-----GS-DVF 123 (314)
Q Consensus 54 ~nf~~~v~~~-~r~y~vvV~FtA~~---~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~-----~~-~lf 123 (314)
++|++.+.+. ..+..+.++|+++. .+.||+.|+..+|..+++-+.-. ++..|..+.+.+ +| ..|
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~------~~~~lv~v~VG~r~~Wkdp~n~f 79 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP------ENARLVYVEVGDRPEWKDPNNPF 79 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S------TTEEEEEEE---HHHHC-TTSHH
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC------CCceEEEEEcCCHHHhCCCCCCc
Confidence 4566666431 23467889999774 57899999999999998776522 468888888855 22 367
Q ss_pred Hh---CCcccCceEEEecCC
Q psy8429 124 QM---LRLNTAPIFMHFPAK 140 (314)
Q Consensus 124 ~~---~~v~svPtl~~f~p~ 140 (314)
+. ++|+++||++-+..+
T Consensus 80 R~~p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 80 RTDPDLKLKGIPTLIRWETG 99 (119)
T ss_dssp HH--CC---SSSEEEECTSS
T ss_pred eEcceeeeeecceEEEECCC
Confidence 76 999999999999765
No 114
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.88 E-value=3.6e-05 Score=59.03 Aligned_cols=65 Identities=18% Similarity=0.314 Sum_probs=57.3
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECC-CCcchHHhCC--cccCceEEEecCC
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD-EGSDVFQMLR--LNTAPIFMHFPAK 140 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~-~~~~lf~~~~--v~svPtl~~f~p~ 140 (314)
+..+++.|+++ ||++|+...|.++++++.+. ..+.|..+|.. .+++....++ +..+|++..+..+
T Consensus 32 ~~~~~v~f~~~----~C~~C~~~~~~l~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 99 (127)
T COG0526 32 GKPVLVDFWAP----WCPPCRAEAPLLEELAEEYG------GDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDG 99 (127)
T ss_pred CceEEEEEEcC----cCHHHHhhchhHHHHHHHhc------CCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCc
Confidence 44577888888 99999999999999999985 26899999997 7899999999 9999999988776
No 115
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.80 E-value=0.00012 Score=65.64 Aligned_cols=83 Identities=11% Similarity=0.159 Sum_probs=62.6
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECC---------CCcchHHhCCcccCceEEEec
Q psy8429 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD---------EGSDVFQMLRLNTAPIFMHFP 138 (314)
Q Consensus 68 ~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~---------~~~~lf~~~~v~svPtl~~f~ 138 (314)
+-+++|+.+ .|+.|+.+.|..+.+|+.|. =++..+.+|-. .+++++++++++.+|++++..
T Consensus 122 ~gL~~F~~~----~C~~C~~~~pil~~~~~~yg------~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~ 191 (215)
T PF13728_consen 122 YGLFFFYRS----DCPYCQQQAPILQQFADKYG------FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVN 191 (215)
T ss_pred eEEEEEEcC----CCchhHHHHHHHHHHHHHhC------CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEE
Confidence 457888888 99999999999999999985 34666665521 357889999999999999998
Q ss_pred CCCCCCCCCccceeecccCHHHHHHH
Q psy8429 139 AKGKPKPSDTLDIQRVGYSAEAIVKW 164 (314)
Q Consensus 139 p~~~~~~~~~~~~~~~~~~a~~l~~f 164 (314)
|++. ..+.+..|-.+.++|.+-
T Consensus 192 ~~~~----~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 192 PNTK----KWYPVSQGFMSLDELEDR 213 (215)
T ss_pred CCCC----eEEEEeeecCCHHHHHHh
Confidence 8631 223444456677777653
No 116
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.69 E-value=8.4e-05 Score=54.55 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=40.9
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh-----CCcccCceEEEecCC
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM-----LRLNTAPIFMHFPAK 140 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~-----~~v~svPtl~~f~p~ 140 (314)
+++|+++ ||++|+.+++.+++.. +-|-.+|++++++..+. ++..++|++. +..|
T Consensus 2 v~ly~~~----~C~~C~~~~~~L~~~~------------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~-~~~g 60 (77)
T TIGR02200 2 ITVYGTT----WCGYCAQLMRTLDKLG------------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTVK-FADG 60 (77)
T ss_pred EEEEECC----CChhHHHHHHHHHHcC------------CceEEEeCcCCHhHHHHHHHHhCCCceeCEEE-ECCC
Confidence 5789999 9999999999876543 33456888887766555 3899999984 6654
No 117
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.69 E-value=0.00026 Score=60.66 Aligned_cols=95 Identities=14% Similarity=0.208 Sum_probs=65.4
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC----------------------------
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE---------------------------- 118 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~---------------------------- 118 (314)
..++++|+++ ||+.|....|++.++.+.+.+ .++.|.-+..+.
T Consensus 26 k~~ll~f~~t----~Cp~c~~~~~~l~~l~~~~~~-----~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D 96 (171)
T cd02969 26 KALVVMFICN----HCPYVKAIEDRLNRLAKEYGA-----KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLD 96 (171)
T ss_pred CEEEEEEECC----CCccHHHHHHHHHHHHHHHhh-----CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEEC
Confidence 3588999999 999999999999999998863 346666666543
Q ss_pred -CcchHHhCCcccCceEEEecCCCCCCCCCcccee----ecccCHHHHHHHHHhhcC
Q psy8429 119 -GSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQ----RVGYSAEAIVKWIADRTD 170 (314)
Q Consensus 119 -~~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~----~~~~~a~~l~~fI~~~~~ 170 (314)
..++.+.+++.+.|+.+++.++|+..-...++-. ....+.+++.+-|++.+.
T Consensus 97 ~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 97 ETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred CchHHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 2355778999999999999877654211111100 122456777777776654
No 118
>KOG3425|consensus
Probab=97.67 E-value=0.0002 Score=57.67 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=57.9
Q ss_pred hhHHHHHHcCCCCccEEEEEeeCC-C---CCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc-------ch
Q psy8429 54 QKYKEYIKNGPRNYSAIVMFTALA-P---QRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS-------DV 122 (314)
Q Consensus 54 ~nf~~~v~~~~r~y~vvV~FtA~~-~---~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~-------~l 122 (314)
+.|++.+.+-..+..+.++|++.. + |-||+.|...+|.+.+.-+.. +.++.|..+|+.+-+ ..
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a------p~~~~~v~v~VG~rp~Wk~p~n~F 86 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA------PEDVHFVHVYVGNRPYWKDPANPF 86 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC------CCceEEEEEEecCCCcccCCCCcc
Confidence 456666532212233889999987 3 789999999999999877632 257999999998822 23
Q ss_pred HHhCCc-ccCceEEEecCC
Q psy8429 123 FQMLRL-NTAPIFMHFPAK 140 (314)
Q Consensus 123 f~~~~v-~svPtl~~f~p~ 140 (314)
-...++ +.+||++-+..+
T Consensus 87 R~d~~~lt~vPTLlrw~~~ 105 (128)
T KOG3425|consen 87 RKDPGILTAVPTLLRWKRQ 105 (128)
T ss_pred ccCCCceeecceeeEEcCc
Confidence 344555 899999999853
No 119
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.58 E-value=0.00072 Score=54.33 Aligned_cols=103 Identities=13% Similarity=0.041 Sum_probs=75.9
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHH---hccccCCCCcEEEEEEECCCCcchHH
Q psy8429 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANS---FRYSQMYSNKLFFILVDFDEGSDVFQ 124 (314)
Q Consensus 48 VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s---~~~~~~~~~~v~F~~vD~~~~~~lf~ 124 (314)
|.++|.+|++++. +++-+ ..++|..+ ..=..+++.++++|++ +. +++.|+.+|.++.....+
T Consensus 1 ~~e~t~e~~~~~~-~~~~~--~~~l~f~~------~~~~~~~~~~~~vAk~~~~~k------gki~Fv~~d~~~~~~~~~ 65 (111)
T cd03072 1 VREITFENAEELT-EEGLP--FLILFHDK------DDLESLKEFKQAVARQLISEK------GAINFLTADGDKFRHPLL 65 (111)
T ss_pred CcccccccHHHHh-cCCCC--eEEEEecc------hHHHHHHHHHHHHHHHHHhcC------ceEEEEEEechHhhhHHH
Confidence 4578999999886 45333 33333322 1136789999999999 76 679999999999888999
Q ss_pred hCCccc--CceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhc
Q psy8429 125 MLRLNT--APIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (314)
Q Consensus 125 ~~~v~s--vPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~ 169 (314)
.+|++. .|.+.+..-.+ . ..|....+..+++.+.+|+++..
T Consensus 66 ~fgl~~~~~P~i~i~~~~~-~---~Ky~~~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 66 HLGKTPADLPVIAIDSFRH-M---YLFPDFEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred HcCCCHhHCCEEEEEcchh-c---CcCCCCccccCHHHHHHHHHHHh
Confidence 999997 99999887532 1 13432245678999999998865
No 120
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00093 Score=56.48 Aligned_cols=95 Identities=20% Similarity=0.382 Sum_probs=62.6
Q ss_pred cCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHH---HHhcc-------ccCCCCcEEEEEEECCC---CcchHHhCCc
Q psy8429 62 NGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVA---NSFRY-------SQMYSNKLFFILVDFDE---GSDVFQMLRL 128 (314)
Q Consensus 62 ~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA---~s~~~-------~~~~~~~v~F~~vD~~~---~~~lf~~~~v 128 (314)
..|.+.+.+++|.++ .|..|.++..+....- +.... +...++++.|..-|-++ ..++++.|++
T Consensus 38 i~~~~Kylllmfes~----~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v 113 (182)
T COG2143 38 ISPNDKYLLLMFESN----GCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV 113 (182)
T ss_pred cCccCcEEEEEEcCC----CChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence 356677899999999 9999999986653322 22111 11234556666555533 3599999999
Q ss_pred ccCceEEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 129 NTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 129 ~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
++.||+++|...|+. .+.+ .|-.++++++.-+
T Consensus 114 rstPtfvFfdk~Gk~----Il~l-PGY~ppe~Fl~vl 145 (182)
T COG2143 114 RSTPTFVFFDKTGKT----ILEL-PGYMPPEQFLAVL 145 (182)
T ss_pred ccCceEEEEcCCCCE----EEec-CCCCCHHHHHHHH
Confidence 999999999876542 2333 3556677665443
No 121
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.54 E-value=0.00015 Score=54.24 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=42.0
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcc-----hHHhCCcccCceEEE
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD-----VFQMLRLNTAPIFMH 136 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~-----lf~~~~v~svPtl~~ 136 (314)
+++|+++ ||++|+..++.+++.. .. ++..+..+|.+++++ +.+..+..++|++++
T Consensus 1 V~~f~~~----~Cp~C~~~~~~L~~~~--i~------~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 1 VVVFSKS----YCPYCKKAKEILAKLN--VK------PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60 (84)
T ss_pred CEEEECC----CChhHHHHHHHHHHcC--CC------CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 4689999 9999999999998765 21 246777888776542 566679999999853
No 122
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.50 E-value=0.00031 Score=53.10 Aligned_cols=80 Identities=20% Similarity=0.383 Sum_probs=59.5
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecCCCCCCCCCcc
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTL 149 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p~~~~~~~~~~ 149 (314)
+++||.+ +|+.|.+++...+.++.+ .++..-.+|+++++++.++|+. .+|.+.+=.++ .... -
T Consensus 2 l~l~~k~----~C~LC~~a~~~L~~~~~~--------~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~-~~~~---~ 64 (81)
T PF05768_consen 2 LTLYTKP----GCHLCDEAKEILEEVAAE--------FPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIR-QFKE---Q 64 (81)
T ss_dssp EEEEE-S----SSHHHHHHHHHHHHCCTT--------STCEEEEEETTTTHHHHHHSCT-STSEEEETT-G-GGCT---S
T ss_pred EEEEcCC----CCChHHHHHHHHHHHHhh--------cCceEEEEECCCCHHHHHHhcC-CCCEEEEcCcc-cccc---c
Confidence 6789999 999999999988876543 3488999999999999999996 79998764432 1111 1
Q ss_pred ceeecccCHHHHHHHHH
Q psy8429 150 DIQRVGYSAEAIVKWIA 166 (314)
Q Consensus 150 ~~~~~~~~a~~l~~fI~ 166 (314)
....+..+++++.+||+
T Consensus 65 ~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 65 EELKWRFDEEQLRAWLE 81 (81)
T ss_dssp EEEESSB-HHHHHHHHH
T ss_pred ceeCCCCCHHHHHHHhC
Confidence 22246789999999985
No 123
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.43 E-value=0.0013 Score=52.87 Aligned_cols=105 Identities=16% Similarity=0.186 Sum_probs=72.9
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCC
Q psy8429 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (314)
Q Consensus 48 VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~ 127 (314)
|.++|.+|+.... .. +. +++++... -...-..=..+++.+.++|+++.. +++.|+.+|.++.....+.||
T Consensus 1 v~~~~~en~~~~~-~~--~l-~~~~~~~~-~~~~~~~~~~~~~~~~~vAk~fk~-----gki~Fv~~D~~~~~~~l~~fg 70 (111)
T cd03073 1 VGHRTKDNRAQFT-KK--PL-VVAYYNVD-YSKNPKGTNYWRNRVLKVAKDFPD-----RKLNFAVADKEDFSHELEEFG 70 (111)
T ss_pred CCeeccchHHHhc-cC--Ce-EEEEEecc-ccCChhHHHHHHHHHHHHHHHCcC-----CeEEEEEEcHHHHHHHHHHcC
Confidence 3578899998884 23 32 33332111 000113346789999999999861 379999999999888999999
Q ss_pred ccc----CceEEEecCCCCCCCCCccceeeccc-CHHHHHHHHHhh
Q psy8429 128 LNT----APIFMHFPAKGKPKPSDTLDIQRVGY-SAEAIVKWIADR 168 (314)
Q Consensus 128 v~s----vPtl~~f~p~~~~~~~~~~~~~~~~~-~a~~l~~fI~~~ 168 (314)
++. .|++.+....+ ..|.. .+.. +++.|.+|+++.
T Consensus 71 l~~~~~~~P~~~i~~~~~-----~KY~~-~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 71 LDFSGGEKPVVAIRTAKG-----KKYVM-EEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCcccCCCCEEEEEeCCC-----CccCC-CcccCCHHHHHHHHHHh
Confidence 985 99999987532 13432 3456 899999999864
No 124
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.42 E-value=0.0009 Score=60.94 Aligned_cols=42 Identities=10% Similarity=0.175 Sum_probs=33.3
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEEC
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDF 116 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~ 116 (314)
+..+++.|+|+ ||++|+.-.|+++++.+.|.. +++.+.-+++
T Consensus 99 GK~vvl~FwAs----wCp~c~~e~p~L~~L~~~~~~-----~Gv~VIgV~~ 140 (236)
T PLN02399 99 GKVLLIVNVAS----KCGLTSSNYSELSHLYEKYKT-----QGFEILAFPC 140 (236)
T ss_pred CCeEEEEEEcC----CCcchHHHHHHHHHHHHHHhc-----CCcEEEEEec
Confidence 34689999999 999999999999999999863 2355555554
No 125
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.40 E-value=0.00078 Score=59.71 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=34.0
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEEC
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDF 116 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~ 116 (314)
..+++.|+|+ ||++|+.-.|+++++.+.|.. +++.+.-+++
T Consensus 40 kvvlv~fwAs----wC~~C~~e~p~L~~l~~~~~~-----~g~~vvgv~~ 80 (199)
T PTZ00056 40 KVLMITNSAS----KCGLTKKHVDQMNRLHSVFNP-----LGLEILAFPT 80 (199)
T ss_pred CEEEEEEECC----CCCChHHHHHHHHHHHHHHhc-----CceEEEEecc
Confidence 4689999999 999999999999999999863 3466666654
No 126
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.37 E-value=0.00053 Score=56.66 Aligned_cols=80 Identities=14% Similarity=0.272 Sum_probs=47.9
Q ss_pred EEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh---
Q psy8429 49 LRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM--- 125 (314)
Q Consensus 49 I~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~--- 125 (314)
++++++.-+.+ .+.++++.+ +.|+.+ ||+.|...-|.+.++|+.- +++-+--+..|+++++..+
T Consensus 26 ~~l~~~~~~~l-~~~~~~~~i-lvi~e~----WCgD~~~~vP~l~kiae~~-------p~i~~~~i~rd~~~el~~~~lt 92 (129)
T PF14595_consen 26 FQLSEEQIEKL-KSIQKPYNI-LVITET----WCGDCARNVPVLAKIAEAN-------PNIEVRIILRDENKELMDQYLT 92 (129)
T ss_dssp HH--HHHHHHH-HT--S-EEE-EEE--T----T-HHHHHHHHHHHHHHHH--------TTEEEEEE-HHHHHHHTTTTTT
T ss_pred cCCCHHHHHHH-HhcCCCcEE-EEEECC----CchhHHHHHHHHHHHHHhC-------CCCeEEEEEecCChhHHHHHHh
Confidence 45666654443 455666655 558888 9999999999999999863 3466666677777665544
Q ss_pred CCcccCceEEEecCCC
Q psy8429 126 LRLNTAPIFMHFPAKG 141 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~ 141 (314)
.|.+++|+++++..++
T Consensus 93 ~g~~~IP~~I~~d~~~ 108 (129)
T PF14595_consen 93 NGGRSIPTFIFLDKDG 108 (129)
T ss_dssp -SS--SSEEEEE-TT-
T ss_pred CCCeecCEEEEEcCCC
Confidence 4678999999997653
No 127
>KOG1672|consensus
Probab=97.37 E-value=0.00099 Score=58.19 Aligned_cols=105 Identities=14% Similarity=0.218 Sum_probs=78.6
Q ss_pred eEEeC-hhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC
Q psy8429 48 VLRFD-GQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (314)
Q Consensus 48 VI~Lt-~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~ 126 (314)
.-++. +.+|=+.++.++ -||+.||-+ .-..|+-+...++.+|+.+- .-.|.+||.+..|=++.++
T Consensus 68 y~ev~~Ekdf~~~~~kS~---kVVcHFY~~----~f~RCKimDkhLe~LAk~h~-------eTrFikvnae~~PFlv~kL 133 (211)
T KOG1672|consen 68 YEEVASEKDFFEEVKKSE---KVVCHFYRP----EFFRCKIMDKHLEILAKRHV-------ETRFIKVNAEKAPFLVTKL 133 (211)
T ss_pred EEEeccHHHHHHHhhcCc---eEEEEEEcC----CCcceehHHHHHHHHHHhcc-------cceEEEEecccCceeeeee
Confidence 66776 456666665443 389999998 77889999999999999885 4789999999999999999
Q ss_pred CcccCceEEEecCCCCCCCCCcccee----ecccCHHHHHHHHHhh
Q psy8429 127 RLNTAPIFMHFPAKGKPKPSDTLDIQ----RVGYSAEAIVKWIADR 168 (314)
Q Consensus 127 ~v~svPtl~~f~p~~~~~~~~~~~~~----~~~~~a~~l~~fI~~~ 168 (314)
+|..+|++.+|++| ...+ ....+. ..+++.+.|..-|.+.
T Consensus 134 ~IkVLP~v~l~k~g-~~~D-~iVGF~dLGnkDdF~te~LE~rL~~S 177 (211)
T KOG1672|consen 134 NIKVLPTVALFKNG-KTVD-YVVGFTDLGNKDDFTTETLENRLAKS 177 (211)
T ss_pred eeeEeeeEEEEEcC-EEEE-EEeeHhhcCCCCcCcHHHHHHHHhhc
Confidence 99999999999997 3211 011111 1235667776666544
No 128
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.34 E-value=0.00094 Score=67.46 Aligned_cols=135 Identities=13% Similarity=0.157 Sum_probs=93.0
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC
Q psy8429 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (314)
Q Consensus 47 ~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~ 126 (314)
+=.+|+++.-+++ .+-+++.. +-.|.++ .|++|.+....++++|... +++.+-.+|..++|++.++|
T Consensus 99 ~~~~l~~~~~~~i-~~~~~~~~-i~~fv~~----~Cp~Cp~~v~~~~~~a~~~-------~~i~~~~id~~~~~~~~~~~ 165 (517)
T PRK15317 99 HPPKLDQEVIEQI-KALDGDFH-FETYVSL----SCHNCPDVVQALNLMAVLN-------PNITHTMIDGALFQDEVEAR 165 (517)
T ss_pred CCCCCCHHHHHHH-HhcCCCeE-EEEEEcC----CCCCcHHHHHHHHHHHHhC-------CCceEEEEEchhCHhHHHhc
Confidence 3456666654444 33333433 5678888 9999999999999999642 46999999999999999999
Q ss_pred CcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCcce--eeCCCCCchhHHHHHHHHHHHHHHhhhhcc
Q psy8429 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQIR--VFRPPNYSGPMAFIMLFAIVAVFLYVKRNN 204 (314)
Q Consensus 127 ~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~i~--i~~p~~~~~~~~~~~~~~~~~~~~~~~k~~ 204 (314)
++.++|++++ ++ + .+..+..+.+++.+.+.+..+..-. -....+| ..++++.+.+++.++.++.|..
T Consensus 166 ~v~~VP~~~i--~~-~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dvvIIGgGpaGl~aA~~la~~G 234 (517)
T PRK15317 166 NIMAVPTVFL--NG-E-------EFGQGRMTLEEILAKLDTGAAARAAEELNAKDPY-DVLVVGGGPAGAAAAIYAARKG 234 (517)
T ss_pred CCcccCEEEE--CC-c-------EEEecCCCHHHHHHHHhccccccchhhcccCCCC-CEEEECCCHHHHHHHHHHHHCC
Confidence 9999999975 22 1 1224556778888888776653311 1122344 4555566777777777776664
Q ss_pred h
Q psy8429 205 L 205 (314)
Q Consensus 205 ~ 205 (314)
.
T Consensus 235 ~ 235 (517)
T PRK15317 235 I 235 (517)
T ss_pred C
Confidence 3
No 129
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.33 E-value=0.0013 Score=56.64 Aligned_cols=109 Identities=12% Similarity=0.102 Sum_probs=66.9
Q ss_pred cEEEEEe-eCCCCCCCccchhhHHHHHHHHHHhccccC-------CC-----------------CcEEEEEEECCCCcch
Q psy8429 68 SAIVMFT-ALAPQRNCHICVSASDEYTIVANSFRYSQM-------YS-----------------NKLFFILVDFDEGSDV 122 (314)
Q Consensus 68 ~vvV~Ft-A~~~~~~C~~C~~~~pefe~vA~s~~~~~~-------~~-----------------~~v~F~~vD~~~~~~l 122 (314)
.+++.|+ +. ||++|..-.|+++++++.+...+- +. ..+-| .+=.|...++
T Consensus 31 ~vvl~F~~~~----~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f-~~l~D~~~~~ 105 (173)
T cd03015 31 WVVLFFYPLD----FTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINF-PLLADPKKKI 105 (173)
T ss_pred EEEEEEECCC----CCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcce-eEEECCchhH
Confidence 4778888 77 999999999999999998863100 00 01111 1123445677
Q ss_pred HHhCCcc------cCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCc-ceeeCCCCCc
Q psy8429 123 FQMLRLN------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ-IRVFRPPNYS 182 (314)
Q Consensus 123 f~~~~v~------svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~-i~i~~p~~~~ 182 (314)
.++|++. ..|+.+++.+.|+..... ......+.+.+++.+.|++.-... -....|.||.
T Consensus 106 ~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 171 (173)
T cd03015 106 SRDYGVLDEEEGVALRGTFIIDPEGIIRHIT-VNDLPVGRSVDETLRVLDALQFVEEHGEVCPANWK 171 (173)
T ss_pred HHHhCCccccCCceeeEEEEECCCCeEEEEE-ecCCCCCCCHHHHHHHHHHhhhhhhcCCCcCCCCC
Confidence 8888886 578888888776442000 000012346788888887654332 3455677874
No 130
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.32 E-value=0.0015 Score=60.19 Aligned_cols=88 Identities=15% Similarity=0.047 Sum_probs=64.6
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC---------cchHHhCCcccCceEEEec
Q psy8429 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG---------SDVFQMLRLNTAPIFMHFP 138 (314)
Q Consensus 68 ~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~---------~~lf~~~~v~svPtl~~f~ 138 (314)
+-+++|+.. .|+.|+++.|..+.+|+.|. =.+..+.+|-.-. ...++++|++.+|++++..
T Consensus 152 ~gL~fFy~~----~C~~C~~~apil~~fa~~yg------i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~ 221 (256)
T TIGR02739 152 YGLFFFYRG----KSPISQKMAPVIQAFAKEYG------ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVN 221 (256)
T ss_pred eeEEEEECC----CCchhHHHHHHHHHHHHHhC------CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEE
Confidence 467788888 99999999999999999985 2455555554422 4478999999999999998
Q ss_pred CCCCCCCCCccceeecccCHHHHHHHHHhhc
Q psy8429 139 AKGKPKPSDTLDIQRVGYSAEAIVKWIADRT 169 (314)
Q Consensus 139 p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~ 169 (314)
++.+ +.+.+..|-.+.++|.+-+-..+
T Consensus 222 ~~t~----~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 222 PKSQ----KMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred CCCC----cEEEEeeccCCHHHHHHHHHHHH
Confidence 8632 12334446678888877665543
No 131
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.28 E-value=0.0015 Score=54.01 Aligned_cols=110 Identities=13% Similarity=0.265 Sum_probs=79.3
Q ss_pred CeEEeChhhH-HHHHHcCCCCccEEEEEeeCCCCCCCcc-c-hhhHHHHHHHHHHhccccCCCCc-EEEEEEECCCCcch
Q psy8429 47 AVLRFDGQKY-KEYIKNGPRNYSAIVMFTALAPQRNCHI-C-VSASDEYTIVANSFRYSQMYSNK-LFFILVDFDEGSDV 122 (314)
Q Consensus 47 ~VI~Lt~~nf-~~~v~~~~r~y~vvV~FtA~~~~~~C~~-C-~~~~pefe~vA~s~~~~~~~~~~-v~F~~vD~~~~~~l 122 (314)
.|++|++++. ++.. .+ ... -++.|-. ....|.. + ....+.++++|+++. ++ +.|+.+|.++.+.+
T Consensus 3 ~~~~l~~~~~~~~~C-~~-~~~-C~i~~l~--~~~d~~~e~~~~~~~~l~~vAk~~k------gk~i~Fv~vd~~~~~~~ 71 (130)
T cd02983 3 EIIELTSEDVFEETC-EE-KQL-CIIAFLP--HILDCQASCRNKYLEILKSVAEKFK------KKPWGWLWTEAGAQLDL 71 (130)
T ss_pred ceEEecCHHHHHhhc-cC-CCe-EEEEEcC--ccccCCHHHHHHHHHHHHHHHHHhc------CCcEEEEEEeCcccHHH
Confidence 4899998754 4444 22 233 3344421 1124554 3 578999999999997 45 99999999999899
Q ss_pred HHhCCccc--CceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCc
Q psy8429 123 FQMLRLNT--APIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ 172 (314)
Q Consensus 123 f~~~~v~s--vPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~ 172 (314)
.+.|||.+ .|++.++...+ . .|....+..+++.+.+|+++.+.-.
T Consensus 72 ~~~fgl~~~~~P~v~i~~~~~-~----KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 72 EEALNIGGFGYPAMVAINFRK-M----KFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred HHHcCCCccCCCEEEEEeccc-C----ccccccCccCHHHHHHHHHHHHcCC
Confidence 99999964 99999998752 1 3543457889999999999987533
No 132
>KOG2501|consensus
Probab=97.27 E-value=0.00044 Score=58.64 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=52.7
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC-----------------------Ccch
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE-----------------------GSDV 122 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~-----------------------~~~l 122 (314)
++.+.++|.|. ||+||++|-|...++=+...+++. .=.|.|+.-|-++ .+++
T Consensus 33 gKvV~lyFsA~----wC~pCR~FTP~Lk~fYe~l~~~~~-~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l 107 (157)
T KOG2501|consen 33 GKVVGLYFSAH----WCPPCRDFTPILKDFYEELKDNAA-PFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKL 107 (157)
T ss_pred CcEEEEEEEEE----ECCchhhCCchHHHHHHHHHhcCC-ceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHH
Confidence 46788999999 999999999987777666554322 1235666555443 2356
Q ss_pred HHhCCcccCceEEEecCCCC
Q psy8429 123 FQMLRLNTAPIFMHFPAKGK 142 (314)
Q Consensus 123 f~~~~v~svPtl~~f~p~~~ 142 (314)
.++|++.++|.+.+.+|.|.
T Consensus 108 ~~ky~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 108 SEKYEVKGIPALVILKPDGT 127 (157)
T ss_pred HHhcccCcCceeEEecCCCC
Confidence 67999999999999988753
No 133
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.24 E-value=0.00085 Score=48.17 Aligned_cols=68 Identities=16% Similarity=0.358 Sum_probs=46.8
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC----CcccCceEEEecCCCCCCC
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML----RLNTAPIFMHFPAKGKPKP 145 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~----~v~svPtl~~f~p~~~~~~ 145 (314)
+++|+++ ||++|+++++.+++ .++-|..+|++++++..+.+ +..++|++.+. + .
T Consensus 2 v~l~~~~----~c~~c~~~~~~l~~------------~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~--~-~--- 59 (73)
T cd02976 2 VTVYTKP----DCPYCKATKRFLDE------------RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIG--D-E--- 59 (73)
T ss_pred EEEEeCC----CChhHHHHHHHHHH------------CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEEC--C-E---
Confidence 5788999 99999998887664 13567778888766544443 68899999862 2 1
Q ss_pred CCccceeecccCHHHHHHHH
Q psy8429 146 SDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fI 165 (314)
. .++.+.+++.+++
T Consensus 60 ----~--i~g~~~~~l~~~~ 73 (73)
T cd02976 60 ----H--LSGFRPDKLRALL 73 (73)
T ss_pred ----E--EecCCHHHHHhhC
Confidence 1 2456667776653
No 134
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.24 E-value=0.0029 Score=55.48 Aligned_cols=91 Identities=15% Similarity=0.058 Sum_probs=59.0
Q ss_pred CCccEEEEEeeCCCCCCCccchhhHHHHHHHHHH-hccc-cC-------CC---C------------cEE--EEEEECCC
Q psy8429 65 RNYSAIVMFTALAPQRNCHICVSASDEYTIVANS-FRYS-QM-------YS---N------------KLF--FILVDFDE 118 (314)
Q Consensus 65 r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s-~~~~-~~-------~~---~------------~v~--F~~vD~~~ 118 (314)
+....+|.|+|+ ||++|+.-.|..++++++ +..+ +. ++ + +.- +..+=.|+
T Consensus 58 ~GKV~lvn~~As----wc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 58 AGKVRVVHHIAG----RTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred CCCEEEEEEEec----CCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 456689999999 999999999999999864 2110 00 00 0 111 11233445
Q ss_pred CcchHHhCCcccCceE-EEecCCCCCCCCCccceeecccCHHHHHHH
Q psy8429 119 GSDVFQMLRLNTAPIF-MHFPAKGKPKPSDTLDIQRVGYSAEAIVKW 164 (314)
Q Consensus 119 ~~~lf~~~~v~svPtl-~~f~p~~~~~~~~~~~~~~~~~~a~~l~~f 164 (314)
+..+..+++++++|+- +++.+.|+.. ....|+.+.+++.+.
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv-----~~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKVK-----FVKEGALSDSDIQTV 175 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcEE-----EEEeCCCCHHHHHHH
Confidence 5667889999999888 7887776542 223566677666653
No 135
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.24 E-value=0.0021 Score=58.81 Aligned_cols=87 Identities=11% Similarity=0.026 Sum_probs=64.2
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc---------chHHhCCcccCceEEEec
Q psy8429 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS---------DVFQMLRLNTAPIFMHFP 138 (314)
Q Consensus 68 ~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~---------~lf~~~~v~svPtl~~f~ 138 (314)
+-+++|+.. .|+.|+++.|..+.+|+.|. =.+.-+.+|-.-.+ ...++++++.+|++++..
T Consensus 145 ~GL~fFy~s----~Cp~C~~~aPil~~fa~~yg------~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~ 214 (248)
T PRK13703 145 YGLMFFYRG----QDPIDGQLAQVINDFRDTYG------LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVD 214 (248)
T ss_pred ceEEEEECC----CCchhHHHHHHHHHHHHHhC------CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEE
Confidence 467889988 99999999999999999985 34666666643332 356799999999999998
Q ss_pred CCCCCCCCCccceeecccCHHHHHHHHHhh
Q psy8429 139 AKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 139 p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~ 168 (314)
|+.+ +.+.+..|-.+.++|.+-+-..
T Consensus 215 ~~t~----~~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 215 PKSG----SVRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred CCCC----cEEEEeeccCCHHHHHHHHHHH
Confidence 8632 1233444667888887766543
No 136
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.19 E-value=0.002 Score=52.17 Aligned_cols=107 Identities=15% Similarity=0.141 Sum_probs=72.9
Q ss_pred hHHHHHH-cCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC--CcchHHhCCcccC
Q psy8429 55 KYKEYIK-NGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE--GSDVFQMLRLNTA 131 (314)
Q Consensus 55 nf~~~v~-~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~--~~~lf~~~~v~sv 131 (314)
+|++.+. +..+...++|+++++....||..|++.-.. +++.+-.. .+..+...|++. +.++...++++++
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln------~~fv~w~~dv~~~eg~~la~~l~~~~~ 77 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYIN------TRMLFWACSVAKPEGYRVSQALRERTY 77 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHH------cCEEEEEEecCChHHHHHHHHhCCCCC
Confidence 4555552 233456789999999777899999755432 33333332 358888888877 5789999999999
Q ss_pred ceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcC
Q psy8429 132 PIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD 170 (314)
Q Consensus 132 Ptl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~ 170 (314)
|++.+..+..+ +-+......|..+++++.+.+.....
T Consensus 78 P~~~~l~~~~~--~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 78 PFLAMIMLKDN--RMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred CEEEEEEecCC--ceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 99999865421 11123334678899999998876543
No 137
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.17 E-value=0.00085 Score=50.85 Aligned_cols=76 Identities=16% Similarity=0.304 Sum_probs=55.7
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc----chHHhCC--cccCceEEEecCCCCC
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS----DVFQMLR--LNTAPIFMHFPAKGKP 143 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~----~lf~~~~--v~svPtl~~f~p~~~~ 143 (314)
+++|+.+ ||+.|++..+.+++++.++ +++.+..+|+++++ ++.+..+ .+++|++++ +| +.
T Consensus 3 v~iy~~~----~C~~C~~a~~~L~~l~~~~-------~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g-~~ 68 (85)
T PRK11200 3 VVIFGRP----GCPYCVRAKELAEKLSEER-------DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQ-KH 68 (85)
T ss_pred EEEEeCC----CChhHHHHHHHHHhhcccc-------cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CC-EE
Confidence 6789999 9999999999999988654 25888899998753 5555555 489999873 33 21
Q ss_pred CCCCccceeecccCHHHHHHHHHhhcC
Q psy8429 144 KPSDTLDIQRVGYSAEAIVKWIADRTD 170 (314)
Q Consensus 144 ~~~~~~~~~~~~~~a~~l~~fI~~~~~ 170 (314)
.+ .-+++.++++++.+
T Consensus 69 ---------ig--g~~~~~~~~~~~~~ 84 (85)
T PRK11200 69 ---------IG--GCTDFEAYVKENLG 84 (85)
T ss_pred ---------Ec--CHHHHHHHHHHhcc
Confidence 12 24678888877765
No 138
>PLN02412 probable glutathione peroxidase
Probab=97.15 E-value=0.0024 Score=54.80 Aligned_cols=41 Identities=10% Similarity=0.189 Sum_probs=32.8
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEEC
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDF 116 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~ 116 (314)
..+++.|+|+ ||++|+.-.|+++++.+.|.. .++.+.-+..
T Consensus 30 k~vlv~f~a~----~C~~c~~e~~~l~~l~~~~~~-----~g~~vvgv~~ 70 (167)
T PLN02412 30 KVLLIVNVAS----KCGLTDSNYKELNVLYEKYKE-----QGFEILAFPC 70 (167)
T ss_pred CEEEEEEeCC----CCCChHHHHHHHHHHHHHHhh-----CCcEEEEecc
Confidence 4688999999 999999999999999999873 2355555544
No 139
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.03 E-value=0.0031 Score=52.21 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=49.9
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECC---------------------CCcchHHh
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD---------------------EGSDVFQM 125 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~---------------------~~~~lf~~ 125 (314)
..++|.|+++ .||++|+.-.|.++++++.+.. +++.+.-+..+ .+.++.++
T Consensus 29 k~~vv~f~~~---~~Cp~C~~~~p~l~~l~~~~~~-----~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 100 (146)
T PF08534_consen 29 KPVVVNFWAS---AWCPPCRKELPYLNELQEKYKD-----KGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKA 100 (146)
T ss_dssp SEEEEEEEST---TTSHHHHHHHHHHHHHHHHHHT-----TTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHH
T ss_pred CeEEEEEEcc---CCCCcchhhhhhHHhhhhhhcc-----CceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHH
Confidence 3467777765 3999999999999999988763 12333222222 44678899
Q ss_pred CCcc---------cCceEEEecCCCCC
Q psy8429 126 LRLN---------TAPIFMHFPAKGKP 143 (314)
Q Consensus 126 ~~v~---------svPtl~~f~p~~~~ 143 (314)
+++. ++|+.+++.+.|+.
T Consensus 101 ~~~~~~~~~~~~~~~P~~~lId~~G~V 127 (146)
T PF08534_consen 101 LGVTIMEDPGNGFGIPTTFLIDKDGKV 127 (146)
T ss_dssp TTCEEECCTTTTSSSSEEEEEETTSBE
T ss_pred hCCccccccccCCeecEEEEEECCCEE
Confidence 9988 99999998877654
No 140
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=96.93 E-value=0.0029 Score=53.20 Aligned_cols=40 Identities=8% Similarity=0.134 Sum_probs=32.5
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEEC
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDF 116 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~ 116 (314)
..+++.|+|+ ||+ |+.-.|+++++.+.|.+ +++.+.-+..
T Consensus 23 k~vvl~fwat----wC~-C~~e~p~l~~l~~~~~~-----~~~~vv~v~~ 62 (152)
T cd00340 23 KVLLIVNVAS----KCG-FTPQYEGLEALYEKYKD-----RGLVVLGFPC 62 (152)
T ss_pred CEEEEEEEcC----CCC-chHHHHHHHHHHHHhcC-----CCEEEEEecc
Confidence 4689999999 999 99999999999999863 3466666654
No 141
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.92 E-value=0.0063 Score=51.16 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=33.1
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEEC
Q psy8429 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDF 116 (314)
Q Consensus 68 ~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~ 116 (314)
.++|.|+|+ ||++|+.-.|+++++.+.|.. +++.+.-+++
T Consensus 24 ~vvv~~~as----~C~~c~~~~~~l~~l~~~~~~-----~~~~v~~i~~ 63 (153)
T TIGR02540 24 VSLVVNVAS----ECGFTDQNYRALQELHRELGP-----SHFNVLAFPC 63 (153)
T ss_pred EEEEEEeCC----CCCchhhhHHHHHHHHHHHhh-----CCeEEEEEec
Confidence 478899999 999999999999999999863 3466666654
No 142
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.86 E-value=0.0068 Score=53.25 Aligned_cols=109 Identities=10% Similarity=0.109 Sum_probs=69.5
Q ss_pred cEEEEEe-eCCCCCCCccchhhHHHHHHHHHHhccccC-------C-----------C---CcEEEEEEECCCCcchHHh
Q psy8429 68 SAIVMFT-ALAPQRNCHICVSASDEYTIVANSFRYSQM-------Y-----------S---NKLFFILVDFDEGSDVFQM 125 (314)
Q Consensus 68 ~vvV~Ft-A~~~~~~C~~C~~~~pefe~vA~s~~~~~~-------~-----------~---~~v~F~~vD~~~~~~lf~~ 125 (314)
++++.|+ +. ||+.|..-.|+|++..+.+.+.+- + . .++-|--+ .|.+.++.+.
T Consensus 33 ~vvL~F~P~~----~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpll-sD~~~~ia~~ 107 (187)
T PRK10382 33 WSVFFFYPAD----FTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMI-GDPTGALTRN 107 (187)
T ss_pred eEEEEEECCC----CCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEE-EcCchHHHHH
Confidence 5778888 88 999999999999999988853110 0 0 12323222 3456788999
Q ss_pred CCc----ccC--ceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCc--ceeeCCCCCc
Q psy8429 126 LRL----NTA--PIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ--IRVFRPPNYS 182 (314)
Q Consensus 126 ~~v----~sv--Ptl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~--i~i~~p~~~~ 182 (314)
||+ .++ |+.++..+.|+......++. ..+++.+++.+.|++.--.. -...-|.||.
T Consensus 108 ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~-~~~~~~~eil~~l~alq~~~~~~g~~~p~~w~ 171 (187)
T PRK10382 108 FDNMREDEGLADRATFVVDPQGIIQAIEVTAE-GIGRDASDLLRKIKAAQYVASHPGEVCPAKWK 171 (187)
T ss_pred cCCCcccCCceeeEEEEECCCCEEEEEEEeCC-CCCCCHHHHHHHHHhhhhHhhcCCeEeCCCCC
Confidence 998 356 99999988765421111111 23568899999886543222 1244588885
No 143
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=96.86 E-value=0.0047 Score=54.76 Aligned_cols=106 Identities=14% Similarity=0.203 Sum_probs=67.0
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEEC---------------------------CCC
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDF---------------------------DEG 119 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~---------------------------~~~ 119 (314)
+.+++.|.++ ||+.|..-.|++.+.++.+.+. ++.+.-+.+ |.+
T Consensus 27 ~vvlf~~pa~----~cp~C~~el~~l~~~~~~f~~~-----gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~ 97 (203)
T cd03016 27 WGILFSHPAD----FTPVCTTELGAFAKLAPEFKKR-----NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPD 97 (203)
T ss_pred EEEEEEecCC----CCCcCHHHHHHHHHHHHHHHHc-----CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECch
Confidence 4456678888 9999999999999999988642 122222222 234
Q ss_pred cchHHhCCcc--------cCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCc-ceeeCCCCCc
Q psy8429 120 SDVFQMLRLN--------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ-IRVFRPPNYS 182 (314)
Q Consensus 120 ~~lf~~~~v~--------svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~-i~i~~p~~~~ 182 (314)
.++++.||+. ++|..+++.|.|+......+.. ..+++.+++.+.|.+.-... ..+..|.||.
T Consensus 98 ~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~-~~gr~~~ell~~l~~lq~~~~~~~~~p~~w~ 168 (203)
T cd03016 98 REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPA-TTGRNFDEILRVVDALQLTDKHKVATPANWK 168 (203)
T ss_pred HHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCC-CCCCCHHHHHHHHHHHhhHhhcCcCcCCCCC
Confidence 5778889876 2456788877665421111222 23567888888886643222 3566788885
No 144
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.85 E-value=0.0056 Score=53.53 Aligned_cols=107 Identities=9% Similarity=0.100 Sum_probs=63.6
Q ss_pred cEEEEEe-eCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEE-----------------------CCCCcchH
Q psy8429 68 SAIVMFT-ALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVD-----------------------FDEGSDVF 123 (314)
Q Consensus 68 ~vvV~Ft-A~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD-----------------------~~~~~~lf 123 (314)
.+++.|+ +. ||++|+.-.|++++..+.+.+.+ -.+..+..| .|...++.
T Consensus 33 ~vvl~F~p~~----~cp~C~~el~~l~~~~~~~~~~g---v~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a 105 (187)
T TIGR03137 33 WSVFFFYPAD----FTFVCPTELEDLADKYAELKKLG---VEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLT 105 (187)
T ss_pred EEEEEEECCC----cCCcCHHHHHHHHHHHHHHHhcC---CcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHH
Confidence 5788888 88 99999999999999988885311 112222222 22345788
Q ss_pred HhCCcc------cCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcC--CcceeeCCCCCc
Q psy8429 124 QMLRLN------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD--IQIRVFRPPNYS 182 (314)
Q Consensus 124 ~~~~v~------svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~--~~i~i~~p~~~~ 182 (314)
+.|++. +.|+.+++.+.|+.... .......+++++++.+.|++..- .+....-|.||.
T Consensus 106 ~~~gv~~~~~g~~~p~tfiID~~G~I~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~ 171 (187)
T TIGR03137 106 RNFGVLIEEAGLADRGTFVIDPEGVIQAV-EITDNGIGRDASELLRKIKAAQYVAAHPGEVCPAKWK 171 (187)
T ss_pred HHhCCcccCCCceeeEEEEECCCCEEEEE-EEeCCCCCCCHHHHHHHHHHhhhHHhcCCeeeCCCCC
Confidence 889986 46988888776554210 00101123477888777743321 111233466764
No 145
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.85 E-value=0.0028 Score=57.60 Aligned_cols=89 Identities=9% Similarity=0.135 Sum_probs=62.5
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHH-------------------------hccccC--------CCC--cEE
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANS-------------------------FRYSQM--------YSN--KLF 110 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s-------------------------~~~~~~--------~~~--~v~ 110 (314)
....++.||-+ .|+.|+.+.++.+++-+. |-+.++ ..+ .-.
T Consensus 107 ~k~~I~vFtDp----~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 107 EKHVITVFTDI----TCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCEEEEEEECC----CChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 34578899999 999999999999886531 000000 001 122
Q ss_pred EEEEECCCCcchHHhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhh
Q psy8429 111 FILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 111 F~~vD~~~~~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~ 168 (314)
.++.+++++.++++++||++.|+++ +++| +. + .|..++++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G-~~-------~-~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNG-TL-------V-PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCC-eE-------e-eCCCCHHHHHHHHHHc
Confidence 4456778899999999999999999 6654 21 1 4667899999999864
No 146
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.82 E-value=0.0045 Score=45.99 Aligned_cols=67 Identities=12% Similarity=0.203 Sum_probs=48.7
Q ss_pred CCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecCCCCCCCCCccceeec-ccCHH
Q psy8429 81 NCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRV-GYSAE 159 (314)
Q Consensus 81 ~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~-~~~a~ 159 (314)
+|+.|..+....+++++.+. +..=.+|..+.+++ .+||+.++|++++ +| + ..+ .| -.+.+
T Consensus 9 ~C~~C~~~~~~~~~~~~~~~--------i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng-~------~~~-~G~~p~~~ 69 (76)
T PF13192_consen 9 GCPYCPELVQLLKEAAEELG--------IEVEIIDIEDFEEI-EKYGVMSVPALVI--NG-K------VVF-VGRVPSKE 69 (76)
T ss_dssp SCTTHHHHHHHHHHHHHHTT--------EEEEEEETTTHHHH-HHTT-SSSSEEEE--TT-E------EEE-ESS--HHH
T ss_pred CCCCcHHHHHHHHHHHHhcC--------CeEEEEEccCHHHH-HHcCCCCCCEEEE--CC-E------EEE-EecCCCHH
Confidence 89999999999999998762 55667777777777 9999999999965 22 2 122 34 44678
Q ss_pred HHHHHHH
Q psy8429 160 AIVKWIA 166 (314)
Q Consensus 160 ~l~~fI~ 166 (314)
++.+||+
T Consensus 70 el~~~l~ 76 (76)
T PF13192_consen 70 ELKELLE 76 (76)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 8888874
No 147
>PRK13190 putative peroxiredoxin; Provisional
Probab=96.79 E-value=0.0053 Score=54.48 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=70.5
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccC-------CC---------------C-cEEEEEEECCCCcchH
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQM-------YS---------------N-KLFFILVDFDEGSDVF 123 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~-------~~---------------~-~v~F~~vD~~~~~~lf 123 (314)
+.++.+|.+. ||+.|..-.+++++..+++.+.+- ++ + ++-|- +=.|.+.++.
T Consensus 29 ~vvL~~~p~~----~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fP-ll~D~~~~ia 103 (202)
T PRK13190 29 WVLLFSHPAD----FTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFP-VIADIDKELA 103 (202)
T ss_pred EEEEEEEcCC----CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEE-EEECCChHHH
Confidence 4444568899 999999989999998888763210 00 0 12222 2234567889
Q ss_pred HhCCcc------cCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCc-ceeeCCCCCc
Q psy8429 124 QMLRLN------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ-IRVFRPPNYS 182 (314)
Q Consensus 124 ~~~~v~------svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~-i~i~~p~~~~ 182 (314)
+.||+. ++|+.+++.|.|+......++. ..+++.+++.+.+.+..-.. .....|.||.
T Consensus 104 ~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~-~~gr~~~ellr~l~~l~~~~~~~~~~p~~w~ 168 (202)
T PRK13190 104 REYNLIDENSGATVRGVFIIDPNQIVRWMIYYPA-ETGRNIDEIIRITKALQVNWKRKVATPANWQ 168 (202)
T ss_pred HHcCCccccCCcEEeEEEEECCCCEEEEEEEeCC-CCCCCHHHHHHHHHHhhhHHhcCCCcCCCCC
Confidence 999984 5899999988765421111222 34688999998887654322 2455678884
No 148
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.79 E-value=0.0038 Score=43.94 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=39.6
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh----CCcccCceEEE
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM----LRLNTAPIFMH 136 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~----~~v~svPtl~~ 136 (314)
+++|+.+ ||+.|+..+..+++ .++-|-.+|+++.++..+. .+..++|++++
T Consensus 1 V~vy~~~----~C~~C~~~~~~L~~------------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKP----GCPYCKKAKEFLDE------------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEEST----TSHHHHHHHHHHHH------------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcC----CCcCHHHHHHHHHH------------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999 99999999887742 2477888999987543333 39999999986
No 149
>KOG3356|consensus
Probab=96.76 E-value=0.00031 Score=55.91 Aligned_cols=100 Identities=21% Similarity=0.414 Sum_probs=71.7
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhcCCCccccCC--Cc----eeEEcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy8429 210 NKLMWGVAAVLFCFAMISGQMWNHIRGPPFIHKNQ--NG----IAYIHGSSQGQFVLETYIVILLNAAIVVGMILISEAA 283 (314)
Q Consensus 210 ~~~~w~~~sl~~~~~~isG~mfn~Ir~~P~~~~~~--~G----i~~~~~g~~~QfgiE~~iv~~lY~~l~~~~i~L~~~~ 283 (314)
|+-.-..+-++.+++.+||..|..|-.+|-++..+ .| +.|.++.-..||-+|+..-|++++.=++++|.|-...
T Consensus 28 s~mtv~alivvsyflv~~g~iydvivepp~igs~~d~~g~~rpv~fla~rvngqyimeglas~flf~lgglg~imld~a~ 107 (147)
T KOG3356|consen 28 SPMTVYALIVVSYFLVTGGIIYDVIVEPPSIGSMTDEHGHQRPVAFLAGRVNGQYIMEGLASSFLFTLGGLGFIMLDRAN 107 (147)
T ss_pred CchHHHHHHHHHHHHhcccEEEEEEecCCCCCcccccCCcCcceEEEeccccceeeehhhcccceEeecCcEEEEEeccc
Confidence 44444555667889999999999999999988544 46 6888998899999999999999999999999887743
Q ss_pred -cccCCcccchhhhhHHHHHHHHHHHHHhh
Q psy8429 284 -TRKNDVRVRRTMAVVGLGLVAFFFSVILS 312 (314)
Q Consensus 284 -p~~~~~~~~~~~~~~~~~~~~~~fs~l~s 312 (314)
|.+. +..| ..++.+++..++-|++++
T Consensus 108 ~~n~~--k~~r-~~~~~~g~~~vlls~~ma 134 (147)
T KOG3356|consen 108 APNIP--KLNR-FLLLFIGFVCVLLSFFMA 134 (147)
T ss_pred CCCcH--HHHH-HHHHHHHHHHHHHHHHHH
Confidence 2222 1111 234444444444555543
No 150
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.70 E-value=0.011 Score=59.65 Aligned_cols=134 Identities=10% Similarity=0.112 Sum_probs=90.3
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC
Q psy8429 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (314)
Q Consensus 47 ~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~ 126 (314)
+-.+|+++.-+++ .+-+++.. +-.|.++ .|++|....-..+++|... +++..-.+|..+.|++.++|
T Consensus 100 ~~~~l~~~~~~~~-~~~~~~~~-i~~f~~~----~Cp~Cp~~v~~~~~~a~~~-------p~i~~~~id~~~~~~~~~~~ 166 (515)
T TIGR03140 100 HGPKLDEGIIDRI-RRLNGPLH-FETYVSL----TCQNCPDVVQALNQMALLN-------PNISHTMIDGALFQDEVEAL 166 (515)
T ss_pred CCCCCCHHHHHHH-HhcCCCeE-EEEEEeC----CCCCCHHHHHHHHHHHHhC-------CCceEEEEEchhCHHHHHhc
Confidence 4567877765554 43344544 5667777 9999999988888888653 36888889999999999999
Q ss_pred CcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCcc--eeeCCCCCchhHHHHHHHHHHHHHHhhhhcc
Q psy8429 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI--RVFRPPNYSGPMAFIMLFAIVAVFLYVKRNN 204 (314)
Q Consensus 127 ~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~i--~i~~p~~~~~~~~~~~~~~~~~~~~~~~k~~ 204 (314)
++.++|++++ . + + ....+..+.+++.+.+.+..+... +.....+| ..++++.+.+++.++.++.|..
T Consensus 167 ~v~~VP~~~i-~-~-~-------~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-dVvIIGgGpAGl~AA~~la~~G 235 (515)
T TIGR03140 167 GIQGVPAVFL-N-G-E-------EFHNGRMDLAELLEKLEETAGVEAASALEQLDPY-DVLVVGGGPAGAAAAIYAARKG 235 (515)
T ss_pred CCcccCEEEE-C-C-c-------EEEecCCCHHHHHHHHhhccCcccchhccccCCC-CEEEECCCHHHHHHHHHHHHCC
Confidence 9999999986 2 2 1 112355566777777766544321 11122234 4555666777777677776654
No 151
>PRK13599 putative peroxiredoxin; Provisional
Probab=96.67 E-value=0.0093 Score=53.54 Aligned_cols=110 Identities=18% Similarity=0.154 Sum_probs=70.9
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccC-------C----------------CCcEEEEEEECCCCcchH
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQM-------Y----------------SNKLFFILVDFDEGSDVF 123 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~-------~----------------~~~v~F~~vD~~~~~~lf 123 (314)
+.+++.|.+. ||++|..-.|.|.++++.+.+.+- + ..++-|= +=.|.+.+++
T Consensus 30 ~vVL~~~pa~----~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fP-il~D~~~~va 104 (215)
T PRK13599 30 WFVLFSHPAD----FTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFP-VIADDLGKVS 104 (215)
T ss_pred eEEEEEeCCC----CCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCcee-EEECCCchHH
Confidence 5556788888 999999999999999988854211 0 0122222 2234467889
Q ss_pred HhCCcc-------cCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcC-CcceeeCCCCCc
Q psy8429 124 QMLRLN-------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTD-IQIRVFRPPNYS 182 (314)
Q Consensus 124 ~~~~v~-------svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~-~~i~i~~p~~~~ 182 (314)
+.||+. ++|+++++.|.|+......|.. ..+++.+++.+.|.+.-- -.-.+..|.||.
T Consensus 105 ~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~-~~gr~~~eilr~l~~lq~~~~~~~~~p~~w~ 170 (215)
T PRK13599 105 NQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQ-EVGRNVDEILRALKALQTADQYGVALPEKWP 170 (215)
T ss_pred HHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCC-CCCCCHHHHHHHHHHhhhhhhcCCCcCCCCC
Confidence 999983 7899999988765431111222 235688888888865311 113566788884
No 152
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.54 E-value=0.034 Score=42.57 Aligned_cols=94 Identities=15% Similarity=0.244 Sum_probs=60.9
Q ss_pred EEeChh-hHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCC
Q psy8429 49 LRFDGQ-KYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (314)
Q Consensus 49 I~Lt~~-nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~ 127 (314)
.++++. ..++++. ..+. ++|-|... +|+ ....+|.++|+... +.+.|+.++ +++++++++
T Consensus 2 ~~i~s~~~l~~~~~--~~~~-~vvg~f~~----~~~---~~~~~f~~~A~~~r------~~~~F~~~~---~~~~~~~~~ 62 (97)
T cd02981 2 KELTSKEELEKFLD--KDDV-VVVGFFKD----EES---EEYKTFEKVAESLR------DDYGFGHTS---DKEVAKKLK 62 (97)
T ss_pred eecCCHHHHHHHhc--cCCe-EEEEEECC----CCc---HHHHHHHHHHHhcc------cCCeEEEEC---hHHHHHHcC
Confidence 345553 3455542 2344 44455554 554 68899999999886 357887766 467777787
Q ss_pred cccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHh
Q psy8429 128 LNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (314)
Q Consensus 128 v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~ 167 (314)
++. |++.+|+|..+. ...| .+..+.+.|.+||..
T Consensus 63 ~~~-~~i~l~~~~~~~--~~~y---~g~~~~~~l~~fi~~ 96 (97)
T cd02981 63 VKP-GSVVLFKPFEEE--PVEY---DGEFTEESLVEFIKD 96 (97)
T ss_pred CCC-CceEEeCCcccC--CccC---CCCCCHHHHHHHHHh
Confidence 754 999999875211 1223 356678999999975
No 153
>PRK15000 peroxidase; Provisional
Probab=96.53 E-value=0.014 Score=51.84 Aligned_cols=111 Identities=10% Similarity=0.123 Sum_probs=69.4
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccC-------CC--------------C---cEEEEEEECCCCcch
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQM-------YS--------------N---KLFFILVDFDEGSDV 122 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~-------~~--------------~---~v~F~~vD~~~~~~l 122 (314)
.+++++|++.+ ||..|..-.|+|.+.++.+.+.+- ++ . ++. +.+-.|.+.++
T Consensus 35 k~vvL~F~p~~---~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~-fpllsD~~~~i 110 (200)
T PRK15000 35 KTTVLFFWPMD---FTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVK-YAMVADVKREI 110 (200)
T ss_pred CEEEEEEECCC---CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccC-ceEEECCCcHH
Confidence 35888899831 899999999999999998864211 00 0 111 22234456788
Q ss_pred HHhCCcc------cCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCc-ceeeCCCCCc
Q psy8429 123 FQMLRLN------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ-IRVFRPPNYS 182 (314)
Q Consensus 123 f~~~~v~------svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~-i~i~~p~~~~ 182 (314)
++.|++. +.|..+++.|.|+.......+. ..+++.+++.+.+...--.. -...-|.||.
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~-~~gr~~~eilr~l~al~~~~~~~~~~p~~w~ 176 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDL-PLGRNIDEMLRMVDALQFHEEHGDVCPAQWE 176 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCC-CCCCCHHHHHHHHHHhhhHHhcCCCcCCCCC
Confidence 8899987 6899999988765421111111 23568888888886532111 1345678884
No 154
>KOG3170|consensus
Probab=96.53 E-value=0.027 Score=49.63 Aligned_cols=106 Identities=12% Similarity=0.253 Sum_probs=79.0
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC-cchHHh
Q psy8429 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG-SDVFQM 125 (314)
Q Consensus 47 ~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~-~~lf~~ 125 (314)
.|.+++..+|-+.|+.....-+|+|.++.. +-+.|.-+.-.++.+|..|- .+.|+++-.... |+
T Consensus 92 ~V~~ISg~dyv~EVT~As~gvwVvvhLy~~----gvp~c~Ll~~~l~~la~kfp-------~iKFVki~at~cIpN---- 156 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVTKASEGVWVVVHLYKQ----GVPLCALLSHHLQSLACKFP-------QIKFVKIPATTCIPN---- 156 (240)
T ss_pred ceeeccchHHHHHHHhccCccEEEEEeecc----ccHHHHHHHHHHHHHhhcCC-------cceEEecccccccCC----
Confidence 399999999999997777778899999998 88889999999999999884 688998876662 22
Q ss_pred CCcccCceEEEecCCCCCCCCCccce-eecc--cCHHHHHHHHHhhc
Q psy8429 126 LRLNTAPIFMHFPAKGKPKPSDTLDI-QRVG--YSAEAIVKWIADRT 169 (314)
Q Consensus 126 ~~v~svPtl~~f~p~~~~~~~~~~~~-~~~~--~~a~~l~~fI~~~~ 169 (314)
|-=.+.||+++|..| ..+.. -... .-|| .++++++.++-+.-
T Consensus 157 YPe~nlPTl~VY~~G-~lk~q-~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 157 YPESNLPTLLVYHHG-ALKKQ-MIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred CcccCCCeEEEeecc-hHHhh-eehhhhhcCCcCCHHHHHHHHHhcc
Confidence 233589999999986 33211 0000 0133 36899998887654
No 155
>PTZ00256 glutathione peroxidase; Provisional
Probab=96.52 E-value=0.015 Score=50.55 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=30.3
Q ss_pred EEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEEC
Q psy8429 69 AIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDF 116 (314)
Q Consensus 69 vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~ 116 (314)
++++++|+ ||++|++-.|+++++.++|.. .++.+.-+++
T Consensus 44 vlv~n~at----wCp~C~~e~p~l~~l~~~~~~-----~gv~vv~vs~ 82 (183)
T PTZ00256 44 IIVVNVAC----KCGLTSDHYTQLVELYKQYKS-----QGLEILAFPC 82 (183)
T ss_pred EEEEEECC----CCCchHHHHHHHHHHHHHHhh-----CCcEEEEEec
Confidence 45566999 999999999999999999863 2355555554
No 156
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.51 E-value=0.0043 Score=54.52 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=57.3
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHH-----------------------hccccC--------CC----CcEEE
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANS-----------------------FRYSQM--------YS----NKLFF 111 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s-----------------------~~~~~~--------~~----~~v~F 111 (314)
...++.|+.+ .|++|+++.++.++.... |-.... .+ .....
T Consensus 78 ~~~i~~f~D~----~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 78 KRVVYVFTDP----DCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CEEEEEEECC----CCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 4578889999 999999999988741111 000000 00 12346
Q ss_pred EEEECCCCcchHHhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 112 ILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 112 ~~vD~~~~~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
+..+++++.++++++|+++.|+++ ++.| .. . .|..++++|.+||
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G-~~-------~-~G~~~~~~l~~~L 197 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADG-RV-------V-PGAPPAAQLEALL 197 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCC-eE-------e-cCCCCHHHHHhhC
Confidence 677888899999999999999998 7664 21 1 3555678887764
No 157
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.49 E-value=0.0047 Score=45.83 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=39.0
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC-c----chHHhCCcccCceEE
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG-S----DVFQMLRLNTAPIFM 135 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~-~----~lf~~~~v~svPtl~ 135 (314)
+++|+++ ||+.|+..++.++++.. +..+..+|.+++ . .+-+..+..++|.++
T Consensus 2 v~~y~~~----~Cp~C~~~~~~l~~~~~----------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~ 58 (82)
T cd03419 2 VVVFSKS----YCPYCKRAKSLLKELGV----------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF 58 (82)
T ss_pred EEEEEcC----CCHHHHHHHHHHHHcCC----------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 5789999 99999999999887553 245667777665 2 344556889999984
No 158
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.35 E-value=0.008 Score=45.80 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=53.3
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC----cchHHhCCc--ccCceEEEecCCCCC
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG----SDVFQMLRL--NTAPIFMHFPAKGKP 143 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~----~~lf~~~~v--~svPtl~~f~p~~~~ 143 (314)
+++|+.+ ||++|++.+..++++.... ..+.+-.+|+++. .++-+..+- .++|.+++ .+ +.
T Consensus 2 V~vys~~----~Cp~C~~ak~~L~~~~~~~-------~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g-~~ 67 (86)
T TIGR02183 2 VVIFGRP----GCPYCVRAKQLAEKLAIER-------ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DE-KH 67 (86)
T ss_pred EEEEeCC----CCccHHHHHHHHHHhCccc-------CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CC-EE
Confidence 5788998 9999999999888765332 2477888888753 245566664 79999964 32 21
Q ss_pred CCCCccceeecccCHHHHHHHHHhhcCC
Q psy8429 144 KPSDTLDIQRVGYSAEAIVKWIADRTDI 171 (314)
Q Consensus 144 ~~~~~~~~~~~~~~a~~l~~fI~~~~~~ 171 (314)
.+| .+++.++++++.++
T Consensus 68 ---------igG--~~dl~~~~~~~~~~ 84 (86)
T TIGR02183 68 ---------VGG--CTDFEQLVKENFDI 84 (86)
T ss_pred ---------ecC--HHHHHHHHHhcccc
Confidence 132 57788888887664
No 159
>KOG0911|consensus
Probab=96.33 E-value=0.0018 Score=57.87 Aligned_cols=65 Identities=14% Similarity=0.286 Sum_probs=59.5
Q ss_pred CCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecCC
Q psy8429 65 RNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAK 140 (314)
Q Consensus 65 r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p~ 140 (314)
++...++.|+|+ ||.+|+++...++.+|+... ++.|++.|.++.+++...+.++++|++..+..+
T Consensus 16 ~~~~~~~~f~a~----wa~~~~q~~~v~~~~~~~~~-------~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~ 80 (227)
T KOG0911|consen 16 KGKLLVLHFWAI----WAVVQKQMDQVFDHLAEYFK-------NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLG 80 (227)
T ss_pred ccchhhhhhhhh----hhhhhhhHHHHHHHHHHhhh-------hheeeeehhhhhhHHHHHHHHhcCceeeeeecc
Confidence 456788999999 99999999999999998763 699999999999999999999999999999665
No 160
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.28 E-value=0.019 Score=43.34 Aligned_cols=72 Identities=13% Similarity=0.298 Sum_probs=52.7
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHH---hCCcccCceEEEecCCCCCCCC
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQ---MLRLNTAPIFMHFPAKGKPKPS 146 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~---~~~v~svPtl~~f~p~~~~~~~ 146 (314)
+.+||.+ ||+.|+..+-.+++ .++-|-.+|++++++..+ ..+.+++|.+.. ++ .
T Consensus 3 v~lYt~~----~Cp~C~~ak~~L~~------------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~-~---- 59 (81)
T PRK10329 3 ITIYTRN----DCVQCHATKRAMES------------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD-L---- 59 (81)
T ss_pred EEEEeCC----CCHhHHHHHHHHHH------------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC-E----
Confidence 5688999 99999998877743 348888999998776443 456789999975 21 1
Q ss_pred CccceeecccCHHHHHHHHHhhc
Q psy8429 147 DTLDIQRVGYSAEAIVKWIADRT 169 (314)
Q Consensus 147 ~~~~~~~~~~~a~~l~~fI~~~~ 169 (314)
. ..|++.+.+.+....++
T Consensus 60 ---~--~~Gf~~~~l~~~~~~~~ 77 (81)
T PRK10329 60 ---S--WSGFRPDMINRLHPAPH 77 (81)
T ss_pred ---E--EecCCHHHHHHHHHhhh
Confidence 1 35788888888876543
No 161
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.26 E-value=0.033 Score=56.89 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=70.8
Q ss_pred CeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC
Q psy8429 47 AVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (314)
Q Consensus 47 ~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~ 126 (314)
+-.+|+++.-+++ .+-+++.. +-.|.++ +|+.|.+.....+++|... +++..-.+|.++.+++.++|
T Consensus 459 ~~~~l~~~~~~~i-~~~~~~~~-i~v~~~~----~C~~Cp~~~~~~~~~~~~~-------~~i~~~~i~~~~~~~~~~~~ 525 (555)
T TIGR03143 459 PGQPLGEELLEKI-KKITKPVN-IKIGVSL----SCTLCPDVVLAAQRIASLN-------PNVEAEMIDVSHFPDLKDEY 525 (555)
T ss_pred CCCCCCHHHHHHH-HhcCCCeE-EEEEECC----CCCCcHHHHHHHHHHHHhC-------CCceEEEEECcccHHHHHhC
Confidence 3457777665554 33334443 4456777 9999999999999998763 36889999999999999999
Q ss_pred CcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHH
Q psy8429 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWI 165 (314)
Q Consensus 127 ~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI 165 (314)
+|.++|++++ +++. ...|..+.+++.+||
T Consensus 526 ~v~~vP~~~i---~~~~-------~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 526 GIMSVPAIVV---DDQQ-------VYFGKKTIEEMLELI 554 (555)
T ss_pred CceecCEEEE---CCEE-------EEeeCCCHHHHHHhh
Confidence 9999999996 2221 113555888888876
No 162
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.25 E-value=0.023 Score=46.44 Aligned_cols=30 Identities=10% Similarity=0.263 Sum_probs=24.9
Q ss_pred cEEEEEe-eCCCCCCCccchhhHHHHHHHHHHhcc
Q psy8429 68 SAIVMFT-ALAPQRNCHICVSASDEYTIVANSFRY 101 (314)
Q Consensus 68 ~vvV~Ft-A~~~~~~C~~C~~~~pefe~vA~s~~~ 101 (314)
.+++.|+ +. ||+.|....|++.++.+.+.+
T Consensus 25 ~~ll~f~~~~----~cp~C~~~~~~l~~~~~~~~~ 55 (140)
T cd03017 25 PVVLYFYPKD----DTPGCTKEACDFRDLYEEFKA 55 (140)
T ss_pred cEEEEEeCCC----CCCchHHHHHHHHHHHHHHHH
Confidence 4677777 57 999999999999999988853
No 163
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.24 E-value=0.0086 Score=43.81 Aligned_cols=66 Identities=12% Similarity=0.329 Sum_probs=47.8
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC---CcccCceEEEecCCCCCCCCC
Q psy8429 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML---RLNTAPIFMHFPAKGKPKPSD 147 (314)
Q Consensus 71 V~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~---~v~svPtl~~f~p~~~~~~~~ 147 (314)
.+|+.+ +|+.|+..+..+++ .++-|-.+|++++++.++.+ |..++|.+++ .| +
T Consensus 2 ~ly~~~----~Cp~C~~ak~~L~~------------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g-~----- 57 (72)
T TIGR02194 2 TVYSKN----NCVQCKMTKKALEE------------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DG-D----- 57 (72)
T ss_pred EEEeCC----CCHHHHHHHHHHHH------------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CC-C-----
Confidence 578888 99999999887763 24778889999887766655 8889999865 22 1
Q ss_pred ccceeecccCHHHHHH
Q psy8429 148 TLDIQRVGYSAEAIVK 163 (314)
Q Consensus 148 ~~~~~~~~~~a~~l~~ 163 (314)
+. .+|.+++++.+
T Consensus 58 --~~-~~G~~~~~~~~ 70 (72)
T TIGR02194 58 --LS-WSGFRPDKLKA 70 (72)
T ss_pred --cE-EeccCHHHHHh
Confidence 01 35677777654
No 164
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=96.24 E-value=0.013 Score=48.32 Aligned_cols=47 Identities=9% Similarity=0.203 Sum_probs=36.4
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcch
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDV 122 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~l 122 (314)
..++++|.++ ||++|++-.|++.++.+++.+ .++.++-|..++..+.
T Consensus 25 ~~vl~f~~~~----~Cp~C~~~~~~l~~~~~~~~~-----~~v~vv~V~~~~~~~~ 71 (149)
T cd02970 25 PVVVVFYRGF----GCPFCREYLRALSKLLPELDA-----LGVELVAVGPESPEKL 71 (149)
T ss_pred CEEEEEECCC----CChhHHHHHHHHHHHHHHHHh-----cCeEEEEEeCCCHHHH
Confidence 3455666788 999999999999999999863 4578888887765433
No 165
>PRK13189 peroxiredoxin; Provisional
Probab=96.16 E-value=0.024 Score=51.13 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=69.2
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccC-------CC----------------CcEEEEEEECCCCcch
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQM-------YS----------------NKLFFILVDFDEGSDV 122 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~-------~~----------------~~v~F~~vD~~~~~~l 122 (314)
.|.++++|.+. ||+.|..-.++|.+.++.+.+.+- ++ .++-|- +=.|.+.++
T Consensus 36 k~vvL~f~pa~----fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fP-llsD~~~~i 110 (222)
T PRK13189 36 KWFVLFSHPAD----FTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFP-IIADDRGEI 110 (222)
T ss_pred CeEEEEEeCCC----CCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCccee-EEEcCccHH
Confidence 35566677888 999999999999999988853211 00 012221 112345678
Q ss_pred HHhCCcc-------cCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCc-ceeeCCCCCc
Q psy8429 123 FQMLRLN-------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ-IRVFRPPNYS 182 (314)
Q Consensus 123 f~~~~v~-------svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~-i~i~~p~~~~ 182 (314)
+++||+. ++|+.++..|.|+......++. ..+++.+++.+.|....... -....|.||.
T Consensus 111 a~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~-~~gr~~~eilr~l~alq~~~~~~~~~p~~w~ 177 (222)
T PRK13189 111 AKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQ-EVGRNMDEILRLVKALQTSDEKGVATPANWP 177 (222)
T ss_pred HHHhCCCccccCCCceeEEEEECCCCeEEEEEecCC-CCCCCHHHHHHHHHHhhhHhhcCcCcCCCCC
Confidence 8999975 5789999988765421111222 34677888888886543211 2455688885
No 166
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.16 E-value=0.014 Score=41.42 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=37.8
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchH----HhCCcccCceEEE
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVF----QMLRLNTAPIFMH 136 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf----~~~~v~svPtl~~ 136 (314)
+++|+++ ||+.|+..++.+++. ++.|-.+|++++++.. +..+..++|+++.
T Consensus 2 v~ly~~~----~Cp~C~~~~~~L~~~------------~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKS----TCPYCKRAKRLLESL------------GIEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECC----CCHHHHHHHHHHHHc------------CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5688999 999999999987742 2567788888866443 3347788998853
No 167
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=96.15 E-value=0.032 Score=51.61 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=67.4
Q ss_pred cEEEEEe-eCCCCCCCccchhhHHHHHHHHHHhccccC-------CC-----------------CcEEEEEEECCCCcch
Q psy8429 68 SAIVMFT-ALAPQRNCHICVSASDEYTIVANSFRYSQM-------YS-----------------NKLFFILVDFDEGSDV 122 (314)
Q Consensus 68 ~vvV~Ft-A~~~~~~C~~C~~~~pefe~vA~s~~~~~~-------~~-----------------~~v~F~~vD~~~~~~l 122 (314)
+++++|+ +. ||++|..-.|+|++..+++.+.+- ++ .++-|- +=.|.+.++
T Consensus 100 ~vVL~FyPa~----ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fP-lLsD~~~~i 174 (261)
T PTZ00137 100 YGLLVFYPLD----FTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFP-LFSDISREV 174 (261)
T ss_pred eEEEEEECCC----CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceE-EEEcCChHH
Confidence 3556666 78 999999999999999988863211 00 122221 212335788
Q ss_pred HHhCCcc-----cCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCc-ceeeCCCCCc
Q psy8429 123 FQMLRLN-----TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ-IRVFRPPNYS 182 (314)
Q Consensus 123 f~~~~v~-----svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~-i~i~~p~~~~ 182 (314)
++.||+. +.|..++..+.|+......++. ..+++.+++.+-|....-.. -...-|.||.
T Consensus 175 akayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~-~~gr~v~eiLr~l~alq~~~~~g~~cPanW~ 239 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDL-GLGRSVDETLRLFDAVQFAEKTGNVCPVNWK 239 (261)
T ss_pred HHHcCCCCcCCceecEEEEECCCCEEEEEEEeCC-CCCCCHHHHHHHHHHhchhhhcCCCcCCCCC
Confidence 9999985 5899999987765431112232 34568888888876443211 2344577874
No 168
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.15 E-value=0.019 Score=45.75 Aligned_cols=43 Identities=14% Similarity=0.306 Sum_probs=32.0
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC
Q psy8429 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE 118 (314)
Q Consensus 68 ~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~ 118 (314)
++++.|+++ .||++|+.-.|+++++.+.+.+ .++.+.-+..++
T Consensus 27 ~~vl~f~~~---~~c~~c~~~l~~l~~~~~~~~~-----~~~~vi~is~d~ 69 (124)
T PF00578_consen 27 PVVLFFWPT---AWCPFCQAELPELNELYKKYKD-----KGVQVIGISTDD 69 (124)
T ss_dssp EEEEEEEST---TTSHHHHHHHHHHHHHHHHHHT-----TTEEEEEEESSS
T ss_pred cEEEEEeCc---cCccccccchhHHHHHhhhhcc-----ceEEeeeccccc
Confidence 355555554 2999999999999999998873 357777777665
No 169
>KOG3171|consensus
Probab=95.98 E-value=0.045 Score=48.75 Aligned_cols=109 Identities=10% Similarity=0.173 Sum_probs=78.9
Q ss_pred eEEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC
Q psy8429 48 VLRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (314)
Q Consensus 48 VI~Lt~-~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~ 126 (314)
|+++++ +.|-+.+-..-.-+.++|..|-+ .-.-|..+.....-+|..| +.+.|+++--.. -..-.+|
T Consensus 140 V~El~~gkqfld~idke~ks~~i~VhIYEd----gi~gcealn~~~~cLAAey-------P~vKFckikss~-~gas~~F 207 (273)
T KOG3171|consen 140 VYELETGKQFLDTIDKELKSTTIVVHIYED----GIKGCEALNSSLTCLAAEY-------PIVKFCKIKSSN-TGASDRF 207 (273)
T ss_pred EEEeccchhHHHHHhcccceEEEEEEEecC----CCchHHHHhhhHHHhhccC-------CceeEEEeeecc-ccchhhh
Confidence 999987 56777763222457788999998 8888999999999999888 479999998765 3446789
Q ss_pred CcccCceEEEecCCCCCCCCCcc-ceeecccCHHHHHHHHHhh
Q psy8429 127 RLNTAPIFMHFPAKGKPKPSDTL-DIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 127 ~v~svPtl~~f~p~~~~~~~~~~-~~~~~~~~a~~l~~fI~~~ 168 (314)
..+.+|++++|+.|.-..+.... +.....+.+-++..|+++.
T Consensus 208 ~~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 208 SLNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred cccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 99999999999987211111000 0111245678888888875
No 170
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=95.98 E-value=0.041 Score=46.87 Aligned_cols=80 Identities=10% Similarity=0.201 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecCCCCCCCCCccceeecc-cCHHHHHHHH
Q psy8429 87 SASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVG-YSAEAIVKWI 165 (314)
Q Consensus 87 ~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~-~~a~~l~~fI 165 (314)
....+|+++|+.+. +.+.|+.++ +++++++++++. |++++|+++.+. ...+ .+. .+.+.|.+||
T Consensus 7 ~~~~~f~~~A~~~~------~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~----~~~y-~~~~~~~~~l~~fI 71 (184)
T PF13848_consen 7 ELFEIFEEAAEKLK------GDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEK----PVVY-DGDKFTPEELKKFI 71 (184)
T ss_dssp HHHHHHHHHHHHHT------TTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTS----EEEE-SSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHhCc------CCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCC----ceec-ccccCCHHHHHHHH
Confidence 45678999999986 468899887 677999999999 999999985221 1222 233 6899999999
Q ss_pred HhhcCCcceeeCCCCC
Q psy8429 166 ADRTDIQIRVFRPPNY 181 (314)
Q Consensus 166 ~~~~~~~i~i~~p~~~ 181 (314)
+++.-..+.-..+.++
T Consensus 72 ~~~~~P~v~~~t~~n~ 87 (184)
T PF13848_consen 72 KKNSFPLVPELTPENF 87 (184)
T ss_dssp HHHSSTSCEEESTTHH
T ss_pred HHhccccccccchhhH
Confidence 9987666655555544
No 171
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=95.97 E-value=0.016 Score=49.62 Aligned_cols=29 Identities=7% Similarity=0.181 Sum_probs=26.0
Q ss_pred ccEEEEEeeCCCCCC-CccchhhHHHHHHHHHHh
Q psy8429 67 YSAIVMFTALAPQRN-CHICVSASDEYTIVANSF 99 (314)
Q Consensus 67 y~vvV~FtA~~~~~~-C~~C~~~~pefe~vA~s~ 99 (314)
..+++.|+++ | |++|..-.|++++.++++
T Consensus 45 k~vvl~f~~s----~~cp~C~~e~~~l~~~~~~~ 74 (167)
T PRK00522 45 KRKVLNIFPS----IDTGVCATSVRKFNQEAAEL 74 (167)
T ss_pred CEEEEEEEcC----CCCCccHHHHHHHHHHHHHc
Confidence 3589999999 9 899999999999998886
No 172
>PRK13191 putative peroxiredoxin; Provisional
Probab=95.92 E-value=0.035 Score=49.80 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=67.5
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccC-------C----------------CCcEEEEEEECCCCcch
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQM-------Y----------------SNKLFFILVDFDEGSDV 122 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~-------~----------------~~~v~F~~vD~~~~~~l 122 (314)
++.++.+|.++ ||..|..-.|+|++.++++.+.+- + ..++-| .+=.|.+.++
T Consensus 34 K~vvLff~pa~----ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~f-PllsD~~~~i 108 (215)
T PRK13191 34 RWFVLFSHPGD----FTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPF-PIIADPMGNV 108 (215)
T ss_pred CcEEEEEeCCC----CCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCce-EEEECCchHH
Confidence 35555688888 999999999999999998864210 0 001111 1112234577
Q ss_pred HHhCCcc-------cCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCc-ceeeCCCCCc
Q psy8429 123 FQMLRLN-------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ-IRVFRPPNYS 182 (314)
Q Consensus 123 f~~~~v~-------svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~-i~i~~p~~~~ 182 (314)
.++||+- +.|..+++.|.|+......++. ..+++.+++.+.|...-... -...-|.||.
T Consensus 109 a~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~-~~gr~~~eilr~l~alq~~~~~~~~~P~~w~ 175 (215)
T PRK13191 109 AKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPM-EIGRNIDEILRAIRALQLVDKAGVVTPANWP 175 (215)
T ss_pred HHHcCCcccccCCceeEEEEEECCCCEEEEEEecCC-CCCCCHHHHHHHHHHhhhhhhcCCCcCCCCC
Confidence 7888863 4788888887765421112232 34578899998886543211 2445677884
No 173
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.86 E-value=0.013 Score=43.36 Aligned_cols=51 Identities=16% Similarity=0.297 Sum_probs=38.1
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC----CcccCceEEE
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML----RLNTAPIFMH 136 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~----~v~svPtl~~ 136 (314)
+++|+.+ ||+.|++.+..+++ .++-|-.+|++++++..+++ +..++|++++
T Consensus 1 v~ly~~~----~Cp~C~~a~~~L~~------------~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKP----YCPYCTRAKALLSS------------KGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecC----CChhHHHHHHHHHH------------cCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3678888 99999999988763 13667778888876555444 6789999854
No 174
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=95.75 E-value=0.066 Score=42.18 Aligned_cols=98 Identities=13% Similarity=0.301 Sum_probs=65.3
Q ss_pred EeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC--CcchHHhC
Q psy8429 50 RFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE--GSDVFQML 126 (314)
Q Consensus 50 ~Lt~-~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~--~~~lf~~~ 126 (314)
+++| .+|.+++. . |+ .|+++|+.+. ..-..-...|.++|+... +.=..+.+||.+ .+++|+++
T Consensus 5 ~i~d~KdfKKLLR-T-r~-NVLvLy~ks~-----k~a~~~Lk~~~~~A~~vk------G~gT~~~vdCgd~e~kKLCKKl 70 (112)
T cd03067 5 DISDHKDFKKLLR-T-RN-NVLVLYSKSA-----KSAEALLKLLSDVAQAVK------GQGTIAWIDCGDSESRKLCKKL 70 (112)
T ss_pred cccchHHHHHHHh-h-cC-cEEEEEecch-----hhHHHHHHHHHHHHHHhc------CceeEEEEecCChHHHHHHHHH
Confidence 3444 78999874 2 22 3788888761 122233447788888776 445677788888 78999999
Q ss_pred Ccc----cCc-eEEEecCCCCCCCCCccceeecccCHHHHHHHHHh
Q psy8429 127 RLN----TAP-IFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (314)
Q Consensus 127 ~v~----svP-tl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~ 167 (314)
++. --| .+.+|+.| ... .+|++ ..+...|..|++.
T Consensus 71 Kv~~~~kp~~~~LkHYKdG-~fH--kdYdR---~~t~kSmv~FlrD 110 (112)
T cd03067 71 KVDPSSKPKPVELKHYKDG-DFH--TEYNR---QLTFKSMVAFLRD 110 (112)
T ss_pred ccCCCCCCCcchhhcccCC-Ccc--ccccc---hhhHHHHHHHhhC
Confidence 999 444 46778886 321 34554 4678889998864
No 175
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.74 E-value=0.025 Score=41.22 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=37.3
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh----CCcc-cCceEE
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM----LRLN-TAPIFM 135 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~----~~v~-svPtl~ 135 (314)
+++|+.+ +|+.|+..+..+++ .++-|-.+|++++++..++ .+-. ++|.++
T Consensus 2 i~ly~~~----~Cp~C~~ak~~L~~------------~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKP----NCPYCVRAKALLDK------------KGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCC----CChHHHHHHHHHHH------------CCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 5688988 99999998887763 2467778888887555444 4666 899886
No 176
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=95.61 E-value=0.064 Score=42.85 Aligned_cols=89 Identities=11% Similarity=0.207 Sum_probs=63.5
Q ss_pred hhhhCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc
Q psy8429 41 EMNAKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS 120 (314)
Q Consensus 41 ~l~~~~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~ 120 (314)
++..+.|.-.++.++++.++. .+ -..+++|+. +|. .|+-|.+..=+.-++.+++. +.+..+.++-+.+.
T Consensus 4 rl~~~~g~~~vd~~~ld~~l~-~~--~~~vlf~~g-Dp~-r~~E~~DvaVILPEL~~af~------~~~~~avv~~~~e~ 72 (107)
T PF07449_consen 4 RLVTRHGWPRVDADTLDAFLA-AP--GDAVLFFAG-DPA-RFPETADVAVILPELVKAFP------GRFRGAVVARAAER 72 (107)
T ss_dssp HHHTT-TEEEE-CCCHHHHHH-CC--SCEEEEESS--TT-TSTTCCHHHHHHHHHHCTST------TSEEEEEEEHHHHH
T ss_pred HHhhhcCCeeechhhHHHHHh-CC--CcEEEEECC-CCC-cCcccccceeEcHHHHHhhh------CccceEEECchhHH
Confidence 445667889999999999975 42 234555554 443 44556665556667777775 56888889977789
Q ss_pred chHHhCCcccCceEEEecCC
Q psy8429 121 DVFQMLRLNTAPIFMHFPAK 140 (314)
Q Consensus 121 ~lf~~~~v~svPtl~~f~p~ 140 (314)
++..+||+...|++++|+.|
T Consensus 73 ~L~~r~gv~~~PaLvf~R~g 92 (107)
T PF07449_consen 73 ALAARFGVRRWPALVFFRDG 92 (107)
T ss_dssp HHHHHHT-TSSSEEEEEETT
T ss_pred HHHHHhCCccCCeEEEEECC
Confidence 99999999999999999987
No 177
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.51 E-value=0.032 Score=41.63 Aligned_cols=55 Identities=16% Similarity=0.269 Sum_probs=40.4
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC---cchHHhCCcccCceEEE
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG---SDVFQMLRLNTAPIFMH 136 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~---~~lf~~~~v~svPtl~~ 136 (314)
+..-+++|+.+ ||+.|++.+..+++ .++-|-.+|++++ .++.+..+..++|.+++
T Consensus 6 ~~~~V~ly~~~----~Cp~C~~ak~~L~~------------~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 6 KPESVVVFTKP----GCPFCAKAKATLKE------------KGYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CCCCEEEEECC----CCHhHHHHHHHHHH------------cCCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 33457889999 99999999887763 2356667888765 34445568899999964
No 178
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=95.46 E-value=0.042 Score=45.24 Aligned_cols=40 Identities=8% Similarity=0.197 Sum_probs=31.9
Q ss_pred cEEEEEeeCCCCCC-CccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC
Q psy8429 68 SAIVMFTALAPQRN-CHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE 118 (314)
Q Consensus 68 ~vvV~FtA~~~~~~-C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~ 118 (314)
.+++.|++. | |++|+.-.|.++++.+++. ++.+.-+..++
T Consensus 28 ~vvl~f~~~----~~c~~C~~e~~~l~~~~~~~~-------~~~vi~Is~d~ 68 (143)
T cd03014 28 VKVISVFPS----IDTPVCATQTKRFNKEAAKLD-------NTVVLTISADL 68 (143)
T ss_pred eEEEEEEcC----CCCCcCHHHHHHHHHHHHhcC-------CCEEEEEECCC
Confidence 588999998 8 6899999999999998863 35666666654
No 179
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=95.35 E-value=0.084 Score=46.54 Aligned_cols=107 Identities=12% Similarity=0.176 Sum_probs=63.4
Q ss_pred cEEEEEee-CCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEE--------------------------CCCCc
Q psy8429 68 SAIVMFTA-LAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVD--------------------------FDEGS 120 (314)
Q Consensus 68 ~vvV~FtA-~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD--------------------------~~~~~ 120 (314)
+++++|++ . ||..|..-.+++.+.++.+.+.+ -++..+.+| .|...
T Consensus 38 ~~lL~F~p~~----~~~~C~~e~~~l~~~~~~f~~~g---~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~ 110 (199)
T PTZ00253 38 WVVLFFYPLD----FTFVCPTEIIQFSDSVKRFNELN---CEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTK 110 (199)
T ss_pred EEEEEEEcCC----CCCcCHHHHHHHHHHHHHHHHcC---CEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHh
Confidence 47778886 5 89999988899999998886410 012222221 22345
Q ss_pred chHHhCCcc------cCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCc-ceeeCCCCCc
Q psy8429 121 DVFQMLRLN------TAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQ-IRVFRPPNYS 182 (314)
Q Consensus 121 ~lf~~~~v~------svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~-i~i~~p~~~~ 182 (314)
++++.||+. .+|+.+++.|.|+......++. ..+++.+++.+.|...-... -.+--|.||.
T Consensus 111 ~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~-~~~r~~~e~l~~l~a~~~~~~~~~~cp~~w~ 178 (199)
T PTZ00253 111 SIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDM-PVGRNVEEVLRLLEAFQFVEKHGEVCPANWK 178 (199)
T ss_pred HHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCC-CCCCCHHHHHHHHHhhhhHHhcCCEeCCCCC
Confidence 778888875 3688888887754321011111 23567777777775543222 2344566764
No 180
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=95.32 E-value=0.02 Score=49.15 Aligned_cols=81 Identities=19% Similarity=0.307 Sum_probs=52.1
Q ss_pred EeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHH-H--HHHHHHhccccCCCCcEEEEEEECCCCcchHHhC
Q psy8429 50 RFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDE-Y--TIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (314)
Q Consensus 50 ~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pe-f--e~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~ 126 (314)
..+++-|++-- .++..+++.+.++ ||+.|+.++.+ | .++|+-.. +...=+++|.++.|++-..|
T Consensus 24 ~w~~ea~~~Ak---~e~KpIfl~ig~~----~C~wChvM~~esf~d~eVa~~lN------~~FI~VkvDree~Pdid~~y 90 (163)
T PF03190_consen 24 PWGEEALEKAK---KENKPIFLSIGYS----WCHWCHVMERESFSDPEVAEYLN------RNFIPVKVDREERPDIDKIY 90 (163)
T ss_dssp -SSHHHHHHHH---HHT--EEEEEE-T----T-HHHHHHHHHTTT-HHHHHHHH------HH-EEEEEETTT-HHHHHHH
T ss_pred cCCHHHHHHHH---hcCCcEEEEEEec----CCcchhhhcccCcCCHHHHHHHh------CCEEEEEeccccCccHHHHH
Confidence 34566666652 3356799999999 99999988753 3 35665554 35788999999999998888
Q ss_pred --------CcccCceEEEecCCCCC
Q psy8429 127 --------RLNTAPIFMHFPAKGKP 143 (314)
Q Consensus 127 --------~v~svPtl~~f~p~~~~ 143 (314)
|..+.|+-++..|.+++
T Consensus 91 ~~~~~~~~~~gGwPl~vfltPdg~p 115 (163)
T PF03190_consen 91 MNAVQAMSGSGGWPLTVFLTPDGKP 115 (163)
T ss_dssp HHHHHHHHS---SSEEEEE-TTS-E
T ss_pred HHHHHHhcCCCCCCceEEECCCCCe
Confidence 78899999999887543
No 181
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=95.27 E-value=0.039 Score=45.14 Aligned_cols=44 Identities=11% Similarity=0.274 Sum_probs=33.1
Q ss_pred cEEEEEeeCCCCCCCcc-chhhHHHHHHHHHHhccccCCCCcEEEEEEECC
Q psy8429 68 SAIVMFTALAPQRNCHI-CVSASDEYTIVANSFRYSQMYSNKLFFILVDFD 117 (314)
Q Consensus 68 ~vvV~FtA~~~~~~C~~-C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~ 117 (314)
++++.|+++ ||++ |....|+++++.+++.+... +++.+.-+..+
T Consensus 24 ~~vl~f~~~----~C~~~C~~~l~~l~~~~~~~~~~~~--~~v~~v~vs~d 68 (142)
T cd02968 24 PVLVYFGYT----HCPDVCPTTLANLAQALKQLGADGG--DDVQVVFISVD 68 (142)
T ss_pred EEEEEEEcC----CCcccCHHHHHHHHHHHHHhhHhhc--CceEEEEEEEC
Confidence 588999999 9998 99999999999999863210 23555555554
No 182
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.18 E-value=0.046 Score=42.86 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=34.7
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcc---hH----HhCCcccCceEE
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD---VF----QMLRLNTAPIFM 135 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~---lf----~~~~v~svPtl~ 135 (314)
++.|+.+ ||+.|++.+..+++. ++-|-.+|+++.++ .. +.-|-+++|.++
T Consensus 10 Vvvysk~----~Cp~C~~ak~~L~~~------------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf 66 (99)
T TIGR02189 10 VVIFSRS----SCCMCHVVKRLLLTL------------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF 66 (99)
T ss_pred EEEEECC----CCHHHHHHHHHHHHc------------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE
Confidence 6789999 999999988865532 24455777776543 22 223578999985
No 183
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=95.14 E-value=0.071 Score=43.38 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=31.3
Q ss_pred cEEEEEe-eCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC
Q psy8429 68 SAIVMFT-ALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE 118 (314)
Q Consensus 68 ~vvV~Ft-A~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~ 118 (314)
.++|.|+ +. ||+.|..-.|++.++.+++.+ +++.|.-+..++
T Consensus 24 ~~ll~f~~~~----~c~~C~~~~~~l~~~~~~~~~-----~~~~~i~is~d~ 66 (140)
T cd02971 24 WVVLFFYPKD----FTPVCTTELCAFRDLAEEFAK-----GGAEVLGVSVDS 66 (140)
T ss_pred eEEEEEeCCC----CCCcCHHHHHHHHHHHHHHHH-----CCCEEEEEeCCC
Confidence 4677777 67 999999999999999999853 235555555544
No 184
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.02 E-value=0.082 Score=42.07 Aligned_cols=94 Identities=13% Similarity=0.197 Sum_probs=61.9
Q ss_pred ChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc----chHHhCC
Q psy8429 52 DGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS----DVFQMLR 127 (314)
Q Consensus 52 t~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~----~lf~~~~ 127 (314)
|.+.+++++.++ .+.+++++=.++ .|+...+...+|++.++.-. +.+-++.+|+-+++ .+++++|
T Consensus 6 t~eql~~i~~~S-~~~~~~iFKHSt----~C~IS~~a~~~~e~~~~~~~------~~~~~y~l~v~~~R~vSn~IAe~~~ 74 (105)
T PF11009_consen 6 TEEQLEEILEES-KEKPVLIFKHST----RCPISAMALREFEKFWEESP------DEIPVYYLDVIEYRPVSNAIAEDFG 74 (105)
T ss_dssp SHHHHHHHHHH----SEEEEEEE-T----T-HHHHHHHHHHHHHHHHHT----------EEEEEGGGGHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhc-ccCcEEEEEeCC----CChhhHHHHHHHHHHhhcCC------ccceEEEEEEEeCchhHHHHHHHhC
Confidence 347888887543 355677777888 99999999999999887653 34899999999964 7799999
Q ss_pred ccc-CceEEEecCCCCCCCCCccceeecccCHHHH
Q psy8429 128 LNT-APIFMHFPAKGKPKPSDTLDIQRVGYSAEAI 161 (314)
Q Consensus 128 v~s-vPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l 161 (314)
|++ -|-++++++| +. .|+-.....++++|
T Consensus 75 V~HeSPQ~ili~~g-~~----v~~aSH~~It~~~l 104 (105)
T PF11009_consen 75 VKHESPQVILIKNG-KV----VWHASHWDITAEAL 104 (105)
T ss_dssp ----SSEEEEEETT-EE----EEEEEGGG-SHHHH
T ss_pred CCcCCCcEEEEECC-EE----EEECccccCCHHhc
Confidence 996 8999999987 32 23333345555554
No 185
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=94.94 E-value=0.095 Score=39.08 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=42.1
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC--C----------------------------
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE--G---------------------------- 119 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~--~---------------------------- 119 (314)
+.+|+.+ .|+.|..+.|.++++.+... +++.+....+.- +
T Consensus 1 i~~f~d~----~Cp~C~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 70 (98)
T cd02972 1 IVEFFDP----LCPYCYLFEPELEKLLYADD------GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL 70 (98)
T ss_pred CeEEECC----CCHhHHhhhHHHHHHHhhcC------CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHH
Confidence 3578888 99999999999999874332 345544444332 2
Q ss_pred --cchHHhCCcccCceEEEec
Q psy8429 120 --SDVFQMLRLNTAPIFMHFP 138 (314)
Q Consensus 120 --~~lf~~~~v~svPtl~~f~ 138 (314)
.+..+++|++++|++++..
T Consensus 71 ~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 71 ADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHHHcCCCCCCEEEECC
Confidence 2457889999999999754
No 186
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=94.88 E-value=0.055 Score=44.67 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=29.9
Q ss_pred EEEEEe-eCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC
Q psy8429 69 AIVMFT-ALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE 118 (314)
Q Consensus 69 vvV~Ft-A~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~ 118 (314)
+++.|+ ++ ||+.|..-.|+++++++++.+ +++.+.-+..+.
T Consensus 31 ~vl~f~~~~----~c~~C~~~~~~l~~~~~~~~~-----~~v~vi~vs~d~ 72 (149)
T cd03018 31 VVLVFFPLA----FTPVCTKELCALRDSLELFEA-----AGAEVLGISVDS 72 (149)
T ss_pred EEEEEeCCC----CCccHHHHHHHHHHHHHHHHh-----CCCEEEEecCCC
Confidence 455554 88 999999999999999998863 235555555443
No 187
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=94.87 E-value=0.15 Score=42.52 Aligned_cols=31 Identities=10% Similarity=0.065 Sum_probs=24.1
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHhcc
Q psy8429 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRY 101 (314)
Q Consensus 68 ~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~ 101 (314)
.+++.|+++ .||+.|....+.++++++.+.+
T Consensus 32 ~~ll~f~~~---~~~p~C~~~~~~l~~~~~~~~~ 62 (154)
T PRK09437 32 RVLVYFYPK---AMTPGCTVQACGLRDNMDELKK 62 (154)
T ss_pred CEEEEEECC---CCCCchHHHHHHHHHHHHHHHH
Confidence 477888865 1577799999999999888763
No 188
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.77 E-value=0.087 Score=38.40 Aligned_cols=51 Identities=12% Similarity=0.263 Sum_probs=38.7
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcc----hHHhCCcccCceEEE
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD----VFQMLRLNTAPIFMH 136 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~----lf~~~~v~svPtl~~ 136 (314)
+++|+.+ ||+.|+..+-.+++ .++-|-.+|++++++ +.+..+-.++|++++
T Consensus 3 v~ly~~~----~C~~C~ka~~~L~~------------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRL----GCEDCTAVRLFLRE------------KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecC----CChhHHHHHHHHHH------------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5678888 99999998887763 246677889988664 555557789999964
No 189
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=94.73 E-value=0.11 Score=45.53 Aligned_cols=41 Identities=5% Similarity=0.151 Sum_probs=32.3
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECC
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFD 117 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~ 117 (314)
..++|.|+|+ ||++|++ .|+++++.+.|.. ..+.+.-+.++
T Consensus 26 KvvLVvf~AS----~C~~~~q-~~~L~~L~~~y~~-----~gl~Vlg~p~n 66 (183)
T PRK10606 26 NVLLIVNVAS----KCGLTPQ-YEQLENIQKAWAD-----QGFVVLGFPCN 66 (183)
T ss_pred CEEEEEEEeC----CCCCcHH-HHHHHHHHHHHhh-----CCeEEEEeecc
Confidence 4689999999 9999986 7799999999863 34666666553
No 190
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=94.61 E-value=0.091 Score=38.13 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=36.7
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcc---hHHhCCcccCceEE
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD---VFQMLRLNTAPIFM 135 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~---lf~~~~v~svPtl~ 135 (314)
+++|+.+ ||+.|...+..+++ .++-|-.+|++++++ +-+..+..++|.++
T Consensus 3 v~lys~~----~Cp~C~~ak~~L~~------------~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if 55 (72)
T cd03029 3 VSLFTKP----GCPFCARAKAALQE------------NGISYEEIPLGKDITGRSLRAVTGAMTVPQVF 55 (72)
T ss_pred EEEEECC----CCHHHHHHHHHHHH------------cCCCcEEEECCCChhHHHHHHHhCCCCcCeEE
Confidence 6789999 99999999776663 236677888887653 22334888999985
No 191
>KOG3414|consensus
Probab=94.59 E-value=0.6 Score=38.30 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=79.0
Q ss_pred HHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEE
Q psy8429 57 KEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMH 136 (314)
Q Consensus 57 ~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~ 136 (314)
++.+. +..+..+++=|--. |=+.|..+....++.|+... +-...+-+|+++-++..+.|++...|++++
T Consensus 15 dqaI~-~t~~rlvViRFGr~----~Dp~C~~mD~~L~~i~~~vs------nfa~IylvdideV~~~~~~~~l~~p~tvmf 83 (142)
T KOG3414|consen 15 DQAIL-STEERLVVIRFGRD----WDPTCMKMDELLSSIAEDVS------NFAVIYLVDIDEVPDFVKMYELYDPPTVMF 83 (142)
T ss_pred HHHHh-cccceEEEEEecCC----CCchHhhHHHHHHHHHHHHh------hceEEEEEecchhhhhhhhhcccCCceEEE
Confidence 44443 33456678888887 99999999999999999876 567888999999999999999999999999
Q ss_pred ecCCCCC------CCCCccceeecccCHHHHHHHHHhhcC--Cc--ceeeCCCCCc
Q psy8429 137 FPAKGKP------KPSDTLDIQRVGYSAEAIVKWIADRTD--IQ--IRVFRPPNYS 182 (314)
Q Consensus 137 f~p~~~~------~~~~~~~~~~~~~~a~~l~~fI~~~~~--~~--i~i~~p~~~~ 182 (314)
|-.+.-. .+...+.+ .-.+.+++++-++-.-. .. --+..|.||+
T Consensus 84 Ffn~kHmkiD~gtgdn~Kin~--~~~~kq~~Idiie~iyRga~KGKgiV~sP~dy~ 137 (142)
T KOG3414|consen 84 FFNNKHMKIDLGTGDNNKINF--AFEDKQEFIDIIETIYRGARKGKGIVQSPKDYS 137 (142)
T ss_pred EEcCceEEEeeCCCCCceEEE--EeccHHHHHHHHHHHHHhhhcCCeEEECCcchH
Confidence 8765111 11122221 22467888887764321 11 1245677774
No 192
>PRK10638 glutaredoxin 3; Provisional
Probab=94.37 E-value=0.093 Score=39.37 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=37.8
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcc----hHHhCCcccCceEEE
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD----VFQMLRLNTAPIFMH 136 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~----lf~~~~v~svPtl~~ 136 (314)
+++|+.+ ||+.|+..+..+++ .++-+..+|++++++ +.+.-+..++|.+.+
T Consensus 4 v~ly~~~----~Cp~C~~a~~~L~~------------~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKA----TCPFCHRAKALLNS------------KGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECC----CChhHHHHHHHHHH------------cCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5688888 99999999887773 235677788887653 345557889998854
No 193
>PHA03050 glutaredoxin; Provisional
Probab=94.21 E-value=0.13 Score=41.15 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=36.9
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC---Cc----chHHhCCcccCceEEE
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE---GS----DVFQMLRLNTAPIFMH 136 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~---~~----~lf~~~~v~svPtl~~ 136 (314)
+++|+.+ ||+.|+..+.-+++..-.. --|-.+|+++ .+ ++-+.-|-+++|.+++
T Consensus 15 V~vys~~----~CPyC~~ak~~L~~~~i~~---------~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 15 VTIFVKF----TCPFCRNALDILNKFSFKR---------GAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred EEEEECC----CChHHHHHHHHHHHcCCCc---------CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 6789999 9999999988776532110 1355667765 22 3455568889999964
No 194
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.15 Score=38.33 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=39.0
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc-----chHHhC-CcccCceEEE
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS-----DVFQML-RLNTAPIFMH 136 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~-----~lf~~~-~v~svPtl~~ 136 (314)
++.|+-+ +|+.|+..+.-++ + ..+-|-.+|+++++ +..++. |.+++|.+++
T Consensus 3 v~iyt~~----~CPyC~~ak~~L~----~--------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKP----GCPYCKRAKRLLD----R--------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECC----CCchHHHHHHHHH----H--------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5678888 9999998877555 1 35788888888865 445555 7899999986
No 195
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=93.79 E-value=0.69 Score=36.29 Aligned_cols=97 Identities=11% Similarity=0.238 Sum_probs=61.6
Q ss_pred EEeC-hhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCC
Q psy8429 49 LRFD-GQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (314)
Q Consensus 49 I~Lt-~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~ 127 (314)
.+++ .++.++++. ..+..++-+|...+. .....|.++|+..+ +...|+... +.++..+++
T Consensus 3 ~~i~s~~~l~~f~~--~~~~~Vvg~f~~~~~--------~~~~~F~~vA~~~R------~d~~F~~~~---~~~~~~~~~ 63 (104)
T cd03069 3 VELRTEAEFEKFLS--DDDASVVGFFEDEDS--------KLLSEFLKAADTLR------ESFRFAHTS---DKQLLEKYG 63 (104)
T ss_pred cccCCHHHHHHHhc--cCCcEEEEEEcCCCc--------hHHHHHHHHHHhhh------hcCEEEEEC---hHHHHHhcC
Confidence 3443 355677653 345667667766421 57889999999986 346675443 346678888
Q ss_pred cccCceEEEecCCC---CCCCCCccceeecccCHHHHHHHHHhh
Q psy8429 128 LNTAPIFMHFPAKG---KPKPSDTLDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 128 v~svPtl~~f~p~~---~~~~~~~~~~~~~~~~a~~l~~fI~~~ 168 (314)
+ -|++.+|.|.. +. ++....+ .|..+.+.|.+||..+
T Consensus 64 ~--~~~ivl~~p~~~~~k~-de~~~~y-~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 64 Y--GEGVVLFRPPRLSNKF-EDSSVKF-DGDLDSSKIKKFIREN 103 (104)
T ss_pred C--CCceEEEechhhhccc-Ccccccc-cCcCCHHHHHHHHHhh
Confidence 8 78899997731 11 1111122 4567889999999865
No 196
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.13 E-value=0.29 Score=37.39 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=36.7
Q ss_pred cEEEEEee-CCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcch----HHhCCcccCceEEE
Q psy8429 68 SAIVMFTA-LAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDV----FQMLRLNTAPIFMH 136 (314)
Q Consensus 68 ~vvV~FtA-~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~l----f~~~~v~svPtl~~ 136 (314)
.++| |+. +....||+.|+..+..++.. ++.|-.+|+++++++ .+.-|-+++|.+++
T Consensus 9 ~vvv-f~k~~~~~~~Cp~C~~ak~~L~~~------------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 9 PVVL-FMKGTPEEPRCGFSRKVVQILNQL------------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred CEEE-EEcCCCCCCCCcHHHHHHHHHHHc------------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 3544 443 22345999999988766532 366778888776544 34457789999854
No 197
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.02 E-value=0.68 Score=47.30 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=52.9
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecCC
Q psy8429 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAK 140 (314)
Q Consensus 68 ~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p~ 140 (314)
..+++|+.+ .|+.|.+++.-.+++|+ .. +++.+-..|..++++.+++|+++..|++.+...+
T Consensus 368 v~l~~~~~~----~~~~~~e~~~~l~e~~~-~s------~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~ 429 (555)
T TIGR03143 368 VTLLLFLDG----SNEKSAELQSFLGEFAS-LS------EKLNSEAVNRGEEPESETLPKITKLPTVALLDDD 429 (555)
T ss_pred EEEEEEECC----CchhhHHHHHHHHHHHh-cC------CcEEEEEeccccchhhHhhcCCCcCCEEEEEeCC
Confidence 356788887 79999999999999984 33 6898988999999999999999999999998543
No 198
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=92.68 E-value=1.6 Score=34.04 Aligned_cols=98 Identities=15% Similarity=0.185 Sum_probs=62.0
Q ss_pred eEEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC
Q psy8429 48 VLRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (314)
Q Consensus 48 VI~Lt~-~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~ 126 (314)
+..+++ ++.+.++. ...+..++-+|...+. .....|.++|+.++ +...|+.. .++++.+.+
T Consensus 2 v~~i~~~~~~e~~~~-~~~~~~Vvg~f~~~~~--------~~~~~F~~vA~~~R------~d~~F~~~---~~~~~~~~~ 63 (102)
T cd03066 2 VEIINSERELQAFEN-IEDDIKLIGYFKSEDS--------EHYKAFEEAAEEFH------PYIKFFAT---FDSKVAKKL 63 (102)
T ss_pred ceEcCCHHHHHHHhc-ccCCeEEEEEECCCCC--------HHHHHHHHHHHhhh------cCCEEEEE---CcHHHHHHc
Confidence 456644 56788762 1346666667765421 56778999999986 34666432 234667777
Q ss_pred CcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhh
Q psy8429 127 RLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 127 ~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~ 168 (314)
++. .|.+.++++..+. ...| ..+..+.+.|.+||...
T Consensus 64 ~~~-~~~i~l~~~~~e~--~~~y--~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 64 GLK-MNEVDFYEPFMEE--PVTI--PDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCC-CCcEEEeCCCCCC--Cccc--CCCCCCHHHHHHHHHHh
Confidence 775 6999999763111 1223 23567899999999754
No 199
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=92.17 E-value=0.65 Score=36.12 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=32.0
Q ss_pred CCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchH----HhCCcccCceEEE
Q psy8429 81 NCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVF----QMLRLNTAPIFMH 136 (314)
Q Consensus 81 ~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf----~~~~v~svPtl~~ 136 (314)
||+.|+..+.-+++. ++-|-.+|++++++.. +.-|-+++|.+++
T Consensus 26 ~Cp~C~~ak~lL~~~------------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 26 QCGFSARAVQILKAC------------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred CCchHHHHHHHHHHc------------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 999999988776541 3557788998876554 3445678999964
No 200
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=91.37 E-value=0.46 Score=38.83 Aligned_cols=29 Identities=24% Similarity=0.317 Sum_probs=24.4
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHh
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSF 99 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~ 99 (314)
-..++.|+.+ +|++|+.+.|+++++.+.+
T Consensus 6 ~~~i~~f~D~----~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 6 DVTIVEFFDY----NCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CEEEEEEECC----CChhHHHhhHHHHHHHHHC
Confidence 4578889988 9999999999999877554
No 201
>KOG1752|consensus
Probab=90.85 E-value=0.75 Score=36.52 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=36.0
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC-cchHHh----CCcccCceEEE
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG-SDVFQM----LRLNTAPIFMH 136 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~-~~lf~~----~~v~svPtl~~ 136 (314)
+|.|+-+ ||..|+.++..|.. +. .+..+.++|-+++ .++-+. -+-+++|.+++
T Consensus 16 VVifSKs----~C~~c~~~k~ll~~----~~------v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 16 VVIFSKS----SCPYCHRAKELLSD----LG------VNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred EEEEECC----cCchHHHHHHHHHh----CC------CCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 5779999 99999998887776 32 2455666666653 233332 33558999986
No 202
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=89.94 E-value=3.5 Score=32.59 Aligned_cols=100 Identities=16% Similarity=0.267 Sum_probs=58.9
Q ss_pred eEEeCh-hhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhC
Q psy8429 48 VLRFDG-QKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQML 126 (314)
Q Consensus 48 VI~Lt~-~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~ 126 (314)
+.++++ ++.++++. .+.+..++.+|...++ .....|.++|+... +...|+... +.++++++
T Consensus 2 v~~i~s~~ele~f~~-~~~~~~VVG~F~~~~~--------~~~~~F~~vA~~~R------dd~~F~~t~---~~~~~~~~ 63 (107)
T cd03068 2 SKQLQTLKQVQEFLR-DGDDVIIIGVFSGEED--------PAYQLYQDAANSLR------EDYKFHHTF---DSEIFKSL 63 (107)
T ss_pred ceEcCCHHHHHHHHh-cCCCEEEEEEECCCCC--------HHHHHHHHHHHhcc------cCCEEEEEC---hHHHHHhc
Confidence 345543 55777753 3225566666665421 56788999999986 356774433 34677788
Q ss_pred CcccCceEEEecCCCCCC---CCCccceeecc-cCHHH-HHHHHHhh
Q psy8429 127 RLNTAPIFMHFPAKGKPK---PSDTLDIQRVG-YSAEA-IVKWIADR 168 (314)
Q Consensus 127 ~v~svPtl~~f~p~~~~~---~~~~~~~~~~~-~~a~~-l~~fI~~~ 168 (314)
++. -|.+.+|.|. ... ++....+ .+. .+.+. |.+||+++
T Consensus 64 ~~~-~~~vvl~rp~-~~~~k~e~~~~~~-~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 64 KVS-PGQLVVFQPE-KFQSKYEPKSHVL-NKKDSTSEDELKDFFKEH 107 (107)
T ss_pred CCC-CCceEEECcH-HHhhhcCcceeee-eccccchHHHHHHHHhcC
Confidence 876 5778888775 111 1112222 233 34444 99999764
No 203
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=89.73 E-value=0.57 Score=46.17 Aligned_cols=51 Identities=20% Similarity=0.375 Sum_probs=38.3
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchH---Hh---------CCcccCceEEE
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVF---QM---------LRLNTAPIFMH 136 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf---~~---------~~v~svPtl~~ 136 (314)
|+.||.+ ||++|+..+.-+++ .++-|-.+|+++.++.. ++ .|-+++|.+++
T Consensus 4 V~vys~~----~Cp~C~~aK~~L~~------------~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKT----NCPFCDLAKSWFGA------------NDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCC----CCHHHHHHHHHHHH------------CCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999 99999988775553 24778889999876422 23 36789999976
No 204
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=88.98 E-value=6 Score=32.72 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=66.0
Q ss_pred HHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCce-E
Q psy8429 56 YKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPI-F 134 (314)
Q Consensus 56 f~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPt-l 134 (314)
-++.+.+. .+..+++-|--. |=+.|.++.....+.|+... +-..++.+|.++-|+.-+.|.+. -|. +
T Consensus 11 VDqAI~~e-~drvvViRFG~d----~d~~Cm~mDeiL~~~a~~v~------~~a~IY~vDi~~Vpdfn~~yel~-dP~tv 78 (133)
T PF02966_consen 11 VDQAILSE-EDRVVVIRFGRD----WDPVCMQMDEILYKIAEKVK------NFAVIYLVDIDEVPDFNQMYELY-DPCTV 78 (133)
T ss_dssp HHHHHHH--SSSEEEEEEE-T----TSHHHHHHHHHHHHHHHHHT------TTEEEEEEETTTTHCCHHHTTS--SSEEE
T ss_pred HHHHHhcc-CceEEEEEeCCC----CCccHHHHHHHHHHHHHHhh------cceEEEEEEcccchhhhcccccC-CCeEE
Confidence 34555433 366788899988 99999999999999999876 46889999999999999999999 665 5
Q ss_pred EEecCCCCC----CCCCccceeecccCHHHHHHHHHh
Q psy8429 135 MHFPAKGKP----KPSDTLDIQRVGYSAEAIVKWIAD 167 (314)
Q Consensus 135 ~~f~p~~~~----~~~~~~~~~~~~~~a~~l~~fI~~ 167 (314)
++|-.+.-. ...+...++-.-.+.+++++-++.
T Consensus 79 mFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 79 MFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp EEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred EEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 655333100 001111221122357878777653
No 205
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=86.51 E-value=1.5 Score=36.23 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=36.3
Q ss_pred ECCCCcchHHhCCcccCceEEEecCCCC-----CCCCCccceeecccCHHHHHHHHHhh
Q psy8429 115 DFDEGSDVFQMLRLNTAPIFMHFPAKGK-----PKPSDTLDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 115 D~~~~~~lf~~~~v~svPtl~~f~p~~~-----~~~~~~~~~~~~~~~a~~l~~fI~~~ 168 (314)
.+.=+|.+|++|+|+.+|++++-+++.. ..+...|+.-.|..+.+.-.+.+++.
T Consensus 56 ~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 56 GVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred cEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 3444699999999999999999987520 01223455555666666666666654
No 206
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=86.20 E-value=2 Score=35.56 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=36.0
Q ss_pred CCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC
Q psy8429 64 PRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG 119 (314)
Q Consensus 64 ~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~ 119 (314)
|..-.+|+.|... .|++|+.+.+++.++-+.+.. .+++.|.-.++...
T Consensus 10 ~~a~~~v~~f~d~----~Cp~C~~~~~~~~~~~~~~i~----~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 10 PDAPITVTEFFDF----QCPHCAKFHEELEKLLKKYID----PGKVKFVFRPVPLD 57 (162)
T ss_dssp TTTSEEEEEEE-T----TSHHHHHHHHHHHHHHHHHTT----TTTEEEEEEESSSS
T ss_pred CCCCeEEEEEECC----CCHhHHHHHHHHhhhhhhccC----CCceEEEEEEcccc
Confidence 3334578888888 999999999999988888732 25788888877543
No 207
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=86.12 E-value=13 Score=29.79 Aligned_cols=108 Identities=16% Similarity=0.088 Sum_probs=70.2
Q ss_pred EeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHH----h
Q psy8429 50 RFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQ----M 125 (314)
Q Consensus 50 ~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~----~ 125 (314)
+|+.+|+-+.=. .+-+...++-|--+ .-+-=.+|.+..+++|+.+.+ +.++-|.-+|=|+-|-+.. .
T Consensus 5 kl~~~~m~e~we-dd~~g~~IvAFaee----~dpdG~eFl~ilk~vA~~nt~----np~LsiIWIDPD~FPllv~yWekt 75 (120)
T cd03074 5 KLKPENMFETWE-DDLDGIHIVAFAEE----EDPDGYEFLEILKEVARDNTD----NPDLSIIWIDPDDFPLLVPYWEKT 75 (120)
T ss_pred hccHHHHHHhhh-cccCCceEEEEecc----CCccHHHHHHHHHHHHHhcCc----CCCceEEEECCccCchhhHHHHhh
Confidence 566666655543 34444566777766 555578999999999999874 3679999999999876553 3
Q ss_pred CCcc-cCceEEEecCCCCCCCCCccceee--cccCHHHHHHHHHhh
Q psy8429 126 LRLN-TAPIFMHFPAKGKPKPSDTLDIQR--VGYSAEAIVKWIADR 168 (314)
Q Consensus 126 ~~v~-svPtl~~f~p~~~~~~~~~~~~~~--~~~~a~~l~~fI~~~ 168 (314)
|+|. +-|.+-+.....+ ++.-++... .-.+++++.+||...
T Consensus 76 F~IDl~~PqIGVV~vtda--dSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 76 FGIDLFRPQIGVVNVTDA--DSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred cCcccCCCceeeEecccc--cceeEecccccccCcHHHHHHHHHhh
Confidence 3443 2477777766421 111222211 124699999999864
No 208
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=85.94 E-value=2.3 Score=34.11 Aligned_cols=71 Identities=13% Similarity=0.256 Sum_probs=43.6
Q ss_pred hhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCc
Q psy8429 53 GQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAP 132 (314)
Q Consensus 53 ~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svP 132 (314)
++..++++.+..+ +.+.+.|--..++ .+.+..+.+.+-..+.+ +- ..+.=+|.+|++|+|+.+|
T Consensus 10 ~~~L~~l~~~a~~-~~~~~V~RG~~~g-------~~~~t~~~~~~l~~~~~----~~----~~v~IdP~~F~~y~I~~VP 73 (113)
T PF09673_consen 10 DASLRNLLKQAER-AGVVVVFRGFPDG-------SFKPTAKAIQELLRKDD----PC----PGVQIDPRLFRQYNITAVP 73 (113)
T ss_pred HHHHHHHHHHHHh-CCcEEEEECCCCC-------CHHHHHHHHHHHhhccC----CC----cceeEChhHHhhCCceEcC
Confidence 3444555433322 2344555544221 67777777776654321 11 4455579999999999999
Q ss_pred eEEEecC
Q psy8429 133 IFMHFPA 139 (314)
Q Consensus 133 tl~~f~p 139 (314)
++++-++
T Consensus 74 a~V~~~~ 80 (113)
T PF09673_consen 74 AFVVVKD 80 (113)
T ss_pred EEEEEcC
Confidence 9999887
No 209
>PRK10824 glutaredoxin-4; Provisional
Probab=85.88 E-value=1.2 Score=35.96 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=35.0
Q ss_pred EEEEeeCCC-CCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHh----CCcccCceEEE
Q psy8429 70 IVMFTALAP-QRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQM----LRLNTAPIFMH 136 (314)
Q Consensus 70 vV~FtA~~~-~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~----~~v~svPtl~~ 136 (314)
||.|...+| ..+|+.|+.....++... +-|..+|+++++++.+. -|-.++|.+++
T Consensus 17 Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 17 ILLYMKGSPKLPSCGFSAQAVQALSACG------------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred EEEEECCCCCCCCCchHHHHHHHHHHcC------------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 344555333 359999999988776532 33445677776544333 35678999886
No 210
>PTZ00062 glutaredoxin; Provisional
Probab=83.92 E-value=6.6 Score=34.96 Aligned_cols=86 Identities=10% Similarity=0.084 Sum_probs=47.7
Q ss_pred HHHHHHHhhhhCCCeEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEE
Q psy8429 34 DRVLHLSEMNAKKAVLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFIL 113 (314)
Q Consensus 34 ~~~~~L~~l~~~~~VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~ 113 (314)
+-.+.+.+++...+.-+ ..+.-++++. . ..++|+--.+....+|+.|+.....+++ .++.|..
T Consensus 85 ~~~~~~~~~~~~~~~~~-~~~~v~~li~-~---~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~------------~~i~y~~ 147 (204)
T PTZ00062 85 TLVSFIRGWAQKGSSED-TVEKIERLIR-N---HKILLFMKGSKTFPFCRFSNAVVNMLNS------------SGVKYET 147 (204)
T ss_pred HHHHHHHHHcCCCCHHH-HHHHHHHHHh-c---CCEEEEEccCCCCCCChhHHHHHHHHHH------------cCCCEEE
Confidence 33344444544333211 2233455553 2 2354433322223499999998877663 2366778
Q ss_pred EECCCCcchHHh----CCcccCceEEE
Q psy8429 114 VDFDEGSDVFQM----LRLNTAPIFMH 136 (314)
Q Consensus 114 vD~~~~~~lf~~----~~v~svPtl~~ 136 (314)
+|++++++..+. -+-.++|.+++
T Consensus 148 ~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 148 YNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred EEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 899887654333 35678898885
No 211
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=80.23 E-value=1.8 Score=38.27 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=27.9
Q ss_pred EEEEEeeCCCCCCCccchhhHHHH---HHHHHHhccccCCCCcEEEEEEEC
Q psy8429 69 AIVMFTALAPQRNCHICVSASDEY---TIVANSFRYSQMYSNKLFFILVDF 116 (314)
Q Consensus 69 vvV~FtA~~~~~~C~~C~~~~pef---e~vA~s~~~~~~~~~~v~F~~vD~ 116 (314)
.|+.|..- .|++|..++|.+ +.+-+.+. +++.|.++.+
T Consensus 40 ~VvEffdy----~CphC~~~~~~l~~~~~~~~~~~------~~v~~~~~~~ 80 (207)
T PRK10954 40 QVLEFFSF----YCPHCYQFEEVYHVSDNVKKKLP------EGTKMTKYHV 80 (207)
T ss_pred eEEEEeCC----CCccHHHhcccccchHHHHHhCC------CCCeEEEecc
Confidence 47888887 999999999976 66666653 3456665554
No 212
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=78.87 E-value=3.2 Score=34.95 Aligned_cols=29 Identities=10% Similarity=0.258 Sum_probs=25.2
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHh
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSF 99 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~ 99 (314)
-..++.|+.. .|++|+.++|..+...+.+
T Consensus 16 ~~~i~~f~D~----~Cp~C~~~~~~~~~~~~~~ 44 (178)
T cd03019 16 KPEVIEFFSY----GCPHCYNFEPILEAWVKKL 44 (178)
T ss_pred CcEEEEEECC----CCcchhhhhHHHHHHHHhC
Confidence 3567888888 9999999999999888776
No 213
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=77.02 E-value=8.5 Score=30.55 Aligned_cols=57 Identities=23% Similarity=0.458 Sum_probs=35.4
Q ss_pred CCCCCchhHHHHHHHHHHHHHHh-hhhcchhhhhhhhhHHHHHHHHHHHhhhhhhhhhhcCCCccccCCCc---eeEEcC
Q psy8429 177 RPPNYSGPMAFIMLFAIVAVFLY-VKRNNLEFLYNKLMWGVAAVLFCFAMISGQMWNHIRGPPFIHKNQNG---IAYIHG 252 (314)
Q Consensus 177 ~p~~~~~~~~~~~~~~~~~~~~~-~~k~~~~~l~~~~~w~~~sl~~~~~~isG~mfn~Ir~~P~~~~~~~G---i~~~~~ 252 (314)
.|+||++.+....+.+.++++++ +.|+.+|- + | ..|+.-|.-+.=+|| +.|..+
T Consensus 3 pPpd~sk~~l~~aiG~~lal~i~~ltr~tlPh------------------v-G---DniH~LPhGG~YrDGTK~I~Y~~P 60 (104)
T PF01307_consen 3 PPPDYSKSYLAAAIGVSLALIIFTLTRSTLPH------------------V-G---DNIHSLPHGGRYRDGTKSINYNSP 60 (104)
T ss_pred CcCCCccchhHHHHHHHHHHHHHHhhcCCCCC------------------C-C---CCCCCCCCCCcccCCCcEEEeCCC
Confidence 47899876655444333433333 34444441 1 2 348999998876677 899887
Q ss_pred CCc
Q psy8429 253 SSQ 255 (314)
Q Consensus 253 g~~ 255 (314)
+..
T Consensus 61 ~~~ 63 (104)
T PF01307_consen 61 NKL 63 (104)
T ss_pred CCC
Confidence 766
No 214
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=72.94 E-value=11 Score=31.73 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=37.4
Q ss_pred EEEEEeeC-CCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcc----hHHhCCc----ccCceEEE
Q psy8429 69 AIVMFTAL-APQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD----VFQMLRL----NTAPIFMH 136 (314)
Q Consensus 69 vvV~FtA~-~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~----lf~~~~v----~svPtl~~ 136 (314)
++++.|+. +-+.+|+.|+..+..++. ..+.|-.+|++.+++ +.+.++- .++|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~------------~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILES------------FRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHH------------CCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 44544442 236689999988877663 247788999987654 4444454 68998875
No 215
>KOG4277|consensus
Probab=69.40 E-value=29 Score=32.85 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=55.4
Q ss_pred CCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC--cchHHhCCcccCceEEEecCCCCCCCCCccceee---cc
Q psy8429 81 NCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG--SDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQR---VG 155 (314)
Q Consensus 81 ~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~--~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~---~~ 155 (314)
+..+-++|...-+++|+.+.+.....++..|+.+|-.+- +-+.. --+.||+++|.-+. .+|-... ..
T Consensus 266 ns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nqilM~---als~P~l~i~Ntsn-----qeYfLse~d~qi 337 (468)
T KOG4277|consen 266 NSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQILMA---ALSEPHLFIFNTSN-----QEYFLSEDDPQI 337 (468)
T ss_pred CcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHHHHHH---hhcCCeEEEEecCc-----hheeeccCChhh
Confidence 456688999999999999875222245689999998883 32222 23789999998752 2232211 23
Q ss_pred cCHHHHHHHHHhhc
Q psy8429 156 YSAEAIVKWIADRT 169 (314)
Q Consensus 156 ~~a~~l~~fI~~~~ 169 (314)
.+.+++.+||+...
T Consensus 338 kniedilqFients 351 (468)
T KOG4277|consen 338 KNIEDILQFIENTS 351 (468)
T ss_pred hhHHHHHHHHhccc
Confidence 46899999998743
No 216
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=67.71 E-value=6.1 Score=36.22 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=21.3
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHH
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVA 96 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA 96 (314)
..+++.||-+ .|+.|+++.++.+...
T Consensus 118 k~~I~vFtDp----~CpyC~kl~~~l~~~~ 143 (251)
T PRK11657 118 PRIVYVFADP----NCPYCKQFWQQARPWV 143 (251)
T ss_pred CeEEEEEECC----CChhHHHHHHHHHHHh
Confidence 4578889999 9999999999876543
No 217
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=64.12 E-value=24 Score=31.33 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=39.0
Q ss_pred CCccEEEEEeeCCCCCCCcc-chhhHHHHHHHHHHhccccCCCCcEEEEEEECCC-CcchHHhCCc
Q psy8429 65 RNYSAIVMFTALAPQRNCHI-CVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE-GSDVFQMLRL 128 (314)
Q Consensus 65 r~y~vvV~FtA~~~~~~C~~-C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~-~~~lf~~~~v 128 (314)
+..+++|+|.=+ .|+- |...-.+...+-+........+=.+.|+.+|=+. .|+..++|.-
T Consensus 66 ~Gk~~lv~FgyT----~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 66 KGKPSLVFFGYT----HCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCCEEEEEeecC----CCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 445677777766 8976 9999998888887765321222236666666665 4666666655
No 218
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=63.07 E-value=11 Score=32.36 Aligned_cols=54 Identities=13% Similarity=0.320 Sum_probs=33.8
Q ss_pred CccEEEEEeeCCCCCCCcc-chhhHHHHHHHHHHhccccCCCCcEEEEEEECCC---CcchHHhC
Q psy8429 66 NYSAIVMFTALAPQRNCHI-CVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE---GSDVFQML 126 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~-C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~---~~~lf~~~ 126 (314)
..+++|.|.-+ .|+. |........++.+...+. .+++.+.-|-+|- .|+..++|
T Consensus 52 Gk~~lv~F~yT----~CpdvCp~~l~~l~~~~~~l~~~---~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 52 GKWVLVFFGYT----RCPDVCPTTLANLSQLQKQLGEE---GKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp TSEEEEEEE-T----TSSSHHHHHHHHHHHHHHHHHHT---TTTEEEEEEESSTTTC-HHHHHHH
T ss_pred CCeEEEEEEEc----CCCccCHHHHHHHHHHHHHhhhc---cCceEEEEEEeCCCCCCHHHHHHH
Confidence 34567777777 8955 999999999998887643 2345544444443 45555553
No 219
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=61.76 E-value=59 Score=34.76 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=37.8
Q ss_pred HHhhhhcchhhhhhhh-hHHHHHHHHHHHhhhhhhhhhhcCCCccccCC-Cc-eeEEcCCCcchhHHHHHHHHHHHHHHH
Q psy8429 197 FLYVKRNNLEFLYNKL-MWGVAAVLFCFAMISGQMWNHIRGPPFIHKNQ-NG-IAYIHGSSQGQFVLETYIVILLNAAIV 273 (314)
Q Consensus 197 ~~~~~k~~~~~l~~~~-~w~~~sl~~~~~~isG~mfn~Ir~~P~~~~~~-~G-i~~~~~g~~~QfgiE~~iv~~lY~~l~ 273 (314)
++|.+|.. +||+ ..+.+++..+.+.+++..|-. -|+..++ +. +.|=...+-.=-|++.+|+-++.++++
T Consensus 15 ~~~~~k~~----~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~tg~gi~~av~~hl~~~~~g~~~~~y~~p~~~~~~~ 86 (762)
T PRK03776 15 LIYAWKAG----RNTWWFAATLTVLGLFVVLNITLFAS----DYFTGDGINDAVLYTLTNSLTGAGVSKYILPGIGIVLG 86 (762)
T ss_pred HHHHHhcc----cccchHHHHHHHHHHHHHHHHHHHHH----hhccCCCccceEEEEEecCCCCccccceeHHHHHHHHH
Confidence 46667663 3333 223334445556666666543 2333333 44 444333222223466777777777776
Q ss_pred HHHHHh
Q psy8429 274 VGMILI 279 (314)
Q Consensus 274 ~~~i~L 279 (314)
+.++++
T Consensus 87 ~~~~~~ 92 (762)
T PRK03776 87 LVAVFG 92 (762)
T ss_pred HHHHHH
Confidence 555544
No 220
>KOG2640|consensus
Probab=59.06 E-value=6.1 Score=37.32 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=66.2
Q ss_pred CccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecCCCCCCC
Q psy8429 66 NYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKP 145 (314)
Q Consensus 66 ~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p~~~~~~ 145 (314)
+-++-..||+. ||+.-+..+|+|+-...-+.+ ---|+.=|...-++++.++++.+-|++....+.-.
T Consensus 76 ~~~vs~~fy~s----~C~fsr~~~~~fd~~~sl~~~------i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~--- 142 (319)
T KOG2640|consen 76 NDYVSLLFYAS----WCPFSRAVRPEFDVRSSLFSS------IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCP--- 142 (319)
T ss_pred CCcccccchhc----ccCcccccCcccchhhhhccc------cccccHHHHhhcccchhccccccCCcceeeccccc---
Confidence 44577899999 999999999999988766641 12233223333689999999999999998877522
Q ss_pred CCccceeecccCHHHHHHHHHhhcC
Q psy8429 146 SDTLDIQRVGYSAEAIVKWIADRTD 170 (314)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fI~~~~~ 170 (314)
..| .+.++-..|++|-.+.++
T Consensus 143 -~~~---~~~r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 143 -ASY---RGERDLASLVNFYTEITP 163 (319)
T ss_pred -hhh---cccccHHHHHHHHHhhcc
Confidence 122 467788999999999997
No 221
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=56.32 E-value=38 Score=25.05 Aligned_cols=62 Identities=6% Similarity=0.087 Sum_probs=41.8
Q ss_pred EEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecC
Q psy8429 69 AIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPA 139 (314)
Q Consensus 69 vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p 139 (314)
.+.+|-+. .-+..++.-...+++-+++. .+....=.+|+.++|++++.++|-..||++=--|
T Consensus 3 ~L~Lyv~g----~tp~S~~ai~nl~~i~e~~l-----~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P 64 (72)
T cd02978 3 VLRLYVAG----RTPKSERALQNLKRILEELL-----GGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLP 64 (72)
T ss_pred EEEEEECC----CCchHHHHHHHHHHHHHHhc-----CCcEEEEEEEcccCHhHHhhCCEEEechhhhcCC
Confidence 34445554 32334444444444444443 2578889999999999999999999999875544
No 222
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=53.86 E-value=12 Score=34.01 Aligned_cols=61 Identities=21% Similarity=0.442 Sum_probs=46.0
Q ss_pred CCeEEeChhhHHHHH--HcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC
Q psy8429 46 KAVLRFDGQKYKEYI--KNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE 118 (314)
Q Consensus 46 ~~VI~Lt~~nf~~~v--~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~ 118 (314)
++|+++++++..++. .++.| ++|+-|-+- -|++=..=.++|+++++.|. +..-|..|.++|
T Consensus 82 s~vv~l~g~~~~~ildf~~g~R--PLVlnFGS~----TCPpF~~~l~~f~~l~~~f~------d~adFl~VYI~E 144 (237)
T PF00837_consen 82 SPVVTLDGQRSCRILDFAKGNR--PLVLNFGSC----TCPPFMAKLDAFKRLVEDFS------DVADFLIVYIEE 144 (237)
T ss_pred CceEeeCCCcceeHHHhccCCC--CeEEEcccc----cchHHHHHHHHHHHHHHHhh------hhhheehhhHhh
Confidence 459999987743333 23544 588999987 89998888999999999986 445677777776
No 223
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=53.69 E-value=23 Score=31.59 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=29.3
Q ss_pred CcchHHhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHh
Q psy8429 119 GSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (314)
Q Consensus 119 ~~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~ 167 (314)
+|.+|++|+|+.||++++--.. .||.-.|..+.++=.+.+++
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~-------~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQ-------GYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCC-------CCCEEEecccHHHHHHHHHh
Confidence 7999999999999999996331 34554555665555555554
No 224
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=53.41 E-value=14 Score=28.60 Aligned_cols=88 Identities=16% Similarity=0.257 Sum_probs=47.8
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc----chHHhCCcccCceEEEecCCCCCCCC
Q psy8429 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS----DVFQMLRLNTAPIFMHFPAKGKPKPS 146 (314)
Q Consensus 71 V~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~----~lf~~~~v~svPtl~~f~p~~~~~~~ 146 (314)
.+|+.+ +|+.|+....-+++ .++-|-.+|+.+++ ++-+.++-.+.+.--++...+.. .
T Consensus 2 ~iY~~~----~C~~c~ka~~~L~~------------~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~--~ 63 (105)
T cd02977 2 TIYGNP----NCSTSRKALAWLEE------------HGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTP--Y 63 (105)
T ss_pred EEEECC----CCHHHHHHHHHHHH------------cCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCch--H
Confidence 568888 99999988765443 24667788887643 33333333333333333433211 0
Q ss_pred Ccccee-ecccCHHHHHHHHHhhcCCcceeeCCC
Q psy8429 147 DTLDIQ-RVGYSAEAIVKWIADRTDIQIRVFRPP 179 (314)
Q Consensus 147 ~~~~~~-~~~~~a~~l~~fI~~~~~~~i~i~~p~ 179 (314)
.+.... ....+.+++.+.+.++-. -++||.
T Consensus 64 ~~l~~~~~~~ls~~e~~~~l~~~p~---LikRPi 94 (105)
T cd02977 64 RKLGLADKDELSDEEALELMAEHPK---LIKRPI 94 (105)
T ss_pred HHcCCccccCCCHHHHHHHHHhCcC---eeeCCE
Confidence 111111 134567888888877644 255654
No 225
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=51.68 E-value=2.2e+02 Score=27.68 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=69.8
Q ss_pred CCchHHHHHHHHhhhhCCCeEEeChhh-HHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCC
Q psy8429 29 SLSLGDRVLHLSEMNAKKAVLRFDGQK-YKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSN 107 (314)
Q Consensus 29 ~~~~~~~~~~L~~l~~~~~VI~Lt~~n-f~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~ 107 (314)
|.-.++.+-+.+.-..+++|-.+|++. .+.+- +-..+--++=+|-+. ... --.+|+.+|..++ +
T Consensus 129 G~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe-~ied~~klIGyFk~~----~s~----~yk~FeeAAe~F~------p 193 (383)
T PF01216_consen 129 GERSADTLVEFLLDLLEDPVEIINNKHELKAFE-RIEDDIKLIGYFKSE----DSE----HYKEFEEAAEHFQ------P 193 (383)
T ss_dssp S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHH-H--SS-EEEEE-SST----TSH----HHHHHHHHHHHCT------T
T ss_pred CccCHHHHHHHHHHhcccchhhhcChhhhhhhh-hcccceeEEEEeCCC----CcH----HHHHHHHHHHhhc------C
Confidence 556667777766555678887777742 22221 111122355556554 222 3467889998886 3
Q ss_pred cEE-EEEEECCCCcchHHhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCcceeeCCCC
Q psy8429 108 KLF-FILVDFDEGSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQIRVFRPPN 180 (314)
Q Consensus 108 ~v~-F~~vD~~~~~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~i~i~~p~~ 180 (314)
-+. |+.. +++++++++++ .=.+-+|.|=.+ +...++..+.+.+++.+||+++-.....=.+|.|
T Consensus 194 ~IkFfAtf----d~~vAk~L~lK-~nev~fyepF~~----~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~ 258 (383)
T PF01216_consen 194 YIKFFATF----DKKVAKKLGLK-LNEVDFYEPFMD----EPITIPGKPYTEEELVEFIEEHKRPTLRKLRPED 258 (383)
T ss_dssp TSEEEEE-----SHHHHHHHT-S-TT-EEEE-TTSS----SEEEESSSS--HHHHHHHHHHT-S-SEEE--GGG
T ss_pred ceeEEEEe----cchhhhhcCcc-ccceeeeccccC----CCccCCCCCCCHHHHHHHHHHhchhHhhhCChhh
Confidence 444 4443 58899999997 778888887411 2234445577899999999998665554445554
No 226
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=51.67 E-value=12 Score=34.38 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=30.8
Q ss_pred CcchHHhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHh
Q psy8429 119 GSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (314)
Q Consensus 119 ~~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~ 167 (314)
|.++.+++|+++.|++++-.+.|. .....|-.++++|.+.+..
T Consensus 208 n~~l~~~lGv~GTPaiv~~d~~G~------~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 208 NQKLMDDLGANATPAIYYMDKDGT------LQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCC------EEEecCCCCHHHHHHHhCC
Confidence 677999999999999997654332 1222455678999888753
No 227
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=49.55 E-value=53 Score=28.44 Aligned_cols=46 Identities=4% Similarity=0.052 Sum_probs=25.6
Q ss_pred HHHHHHH--HHHHHHhhhcccccCCcccchhhhhHHHHHHHHHHHHHh
Q psy8429 266 ILLNAAI--VVGMILISEAATRKNDVRVRRTMAVVGLGLVAFFFSVIL 311 (314)
Q Consensus 266 ~~lY~~l--~~~~i~L~~~~p~~~~~~~~~~~~~~~~~~~~~~fs~l~ 311 (314)
|++|+++ ++.+.++.-..|..+.-..-..-+++..+++|++|..+.
T Consensus 101 Gi~YG~~~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~CiyiLyGlFI 148 (173)
T PF11085_consen 101 GILYGLAWWAIVFFVLNPIFPMIKPVTELDWNTIITTLCIYILYGLFI 148 (173)
T ss_pred HHHHHHHHHHHHHHHhcccccCChhhhhCchhHHHHHHHHHHHHHHHh
Confidence 3444444 333344444445444333323447788888899998775
No 228
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=48.12 E-value=25 Score=31.08 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=20.5
Q ss_pred eEEcCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy8429 248 AYIHGSSQGQFVLETYIVILLNAAIVVGMILISEAATR 285 (314)
Q Consensus 248 ~~~~~g~~~QfgiE~~iv~~lY~~l~~~~i~L~~~~p~ 285 (314)
.+|+++++.|+|+-+.++..+. .++.+..+.+..+.
T Consensus 101 ~~f~~~~~~~~gi~tli~~~i~--~G~~~~~~~~~i~~ 136 (206)
T PF06570_consen 101 GFFSPKNSNQYGIITLILVSIV--GGLVFYFIFKYIYP 136 (206)
T ss_pred HHHhhcccccccHHHHHHHHHH--HHHHHHHHHHHHhc
Confidence 3455555566688877765544 34445555655543
No 229
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=48.05 E-value=82 Score=25.34 Aligned_cols=85 Identities=19% Similarity=0.376 Sum_probs=54.2
Q ss_pred CCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC-cchHHhCC--cccCceEEEecCCCCCCCCCccceee
Q psy8429 77 APQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG-SDVFQMLR--LNTAPIFMHFPAKGKPKPSDTLDIQR 153 (314)
Q Consensus 77 ~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~-~~lf~~~~--v~svPtl~~f~p~~~~~~~~~~~~~~ 153 (314)
+.++-|++|..++--....-. + ...+-...||+..- .++.+..| =||.|.+++ ..+ .....+. .. .
T Consensus 19 G~~f~Cp~c~~iEGlLa~~P~-l------~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL-~~~-~~~~~~~-~~-~ 87 (112)
T PF11287_consen 19 GQRFYCPHCAAIEGLLASFPD-L------RERLDVRRVDFPRPRQAVIALLGEANQSLPVLVL-ADG-APSPDDA-GS-H 87 (112)
T ss_pred CceEECCchHHHHhHHhhChh-h------hhcccEEEeCCCCchHHHHHHhChhccCCCEEEe-CCC-CCCcccc-cc-c
Confidence 345789999998875442221 1 24688999999995 46666666 478999886 443 2211111 11 1
Q ss_pred cc----cCHHHHHHHHHhhcCCc
Q psy8429 154 VG----YSAEAIVKWIADRTDIQ 172 (314)
Q Consensus 154 ~~----~~a~~l~~fI~~~~~~~ 172 (314)
++ .+++.+.++++++-|..
T Consensus 88 ~~~rfi~d~~~I~~~La~r~g~p 110 (112)
T PF11287_consen 88 GGRRFIDDPRRILRYLAERHGFP 110 (112)
T ss_pred CCeEEeCCHHHHHHHHHHHcCCC
Confidence 22 36899999999987754
No 230
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=48.03 E-value=47 Score=27.77 Aligned_cols=55 Identities=9% Similarity=0.041 Sum_probs=34.8
Q ss_pred EEEEEeeCCCCCCCccchhh-HHHHHHHHHHhccccCCCCcEEEEEEECCCC-cchHHhCCc
Q psy8429 69 AIVMFTALAPQRNCHICVSA-SDEYTIVANSFRYSQMYSNKLFFILVDFDEG-SDVFQMLRL 128 (314)
Q Consensus 69 vvV~FtA~~~~~~C~~C~~~-~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~-~~lf~~~~v 128 (314)
++++|+. ..||+.|..- .+.|.+..+++.+.+ -..+.-...|-.+. .+..+++++
T Consensus 32 vvl~fyP---~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 32 VVIFGVP---GAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred EEEEEeC---CCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHHHHHHHHHhhCC
Confidence 5555552 3499999987 999999998886420 01255555554443 446667776
No 231
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=47.94 E-value=60 Score=24.91 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=42.4
Q ss_pred cEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecCC
Q psy8429 68 SAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAK 140 (314)
Q Consensus 68 ~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p~ 140 (314)
+++=+|-|. .-+..++.-....+.-+++.. +....=.+|+.++|++++.++|-..||++=--|.
T Consensus 4 ~~LrLyvag----~~p~S~~ai~nl~~i~e~~l~-----g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~ 67 (87)
T TIGR02654 4 YVLKLYVAG----NTPNSVRALKTLKNILETEFQ-----GVYALKVIDVLKNPQLAEEDKILATPTLSKILPP 67 (87)
T ss_pred EEEEEEEeC----CCchHHHHHHHHHHHHHHhcC-----CceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC
Confidence 345444443 333444444444555444432 4577888999999999999999999998765553
No 232
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=44.53 E-value=42 Score=28.44 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=27.9
Q ss_pred ecccCHHHHHHHHHhhcCCcceeeCCCCCchhHHHH
Q psy8429 153 RVGYSAEAIVKWIADRTDIQIRVFRPPNYSGPMAFI 188 (314)
Q Consensus 153 ~~~~~a~~l~~fI~~~~~~~i~i~~p~~~~~~~~~~ 188 (314)
..|.+..++.+|+-++-|.-+.++-|.++...+.++
T Consensus 75 ~eGkS~~qIid~mVaRYG~FVly~Pp~~~~T~lLW~ 110 (153)
T COG3088 75 QEGKSDQQIIDYMVARYGEFVLYKPPLTGQTLLLWG 110 (153)
T ss_pred HcCCcHHHHHHHHHHhhcceeeecCCCchhHHHHHH
Confidence 467888999999999999888777777776554443
No 233
>PRK09301 circadian clock protein KaiB; Provisional
Probab=43.88 E-value=78 Score=25.08 Aligned_cols=65 Identities=9% Similarity=0.050 Sum_probs=42.8
Q ss_pred ccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecCC
Q psy8429 67 YSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPAK 140 (314)
Q Consensus 67 y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p~ 140 (314)
.+++=+|-|. .-+.-++.-....++-+.+.. +....=.+|+.++|++++.++|-..||++=--|.
T Consensus 6 ~~~LrLyVag----~tp~S~~ai~nL~~icE~~l~-----g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~ 70 (103)
T PRK09301 6 TYILKLYVAG----NTPNSVRALKTLKNILETEFK-----GVYALKVIDVLKNPQLAEEDKILATPTLAKILPP 70 (103)
T ss_pred eEEEEEEEeC----CCchHHHHHHHHHHHHHHhcC-----CceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC
Confidence 4455455554 333344444444444444432 4577888999999999999999999998765443
No 234
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=42.93 E-value=29 Score=29.54 Aligned_cols=65 Identities=15% Similarity=0.312 Sum_probs=38.9
Q ss_pred HHHHhhcCCcceeeCCCCCchhHHHHHHHHHHHHHHhhhhcchh-hhhhhhhHHHHHHHHHHHhhh
Q psy8429 163 KWIADRTDIQIRVFRPPNYSGPMAFIMLFAIVAVFLYVKRNNLE-FLYNKLMWGVAAVLFCFAMIS 227 (314)
Q Consensus 163 ~fI~~~~~~~i~i~~p~~~~~~~~~~~~~~~~~~~~~~~k~~~~-~l~~~~~w~~~sl~~~~~~is 227 (314)
++-++..|..+.+-..+.|...+.++.+++.==..++++....+ .++++++|.-.++..++.+++
T Consensus 37 ~~yr~~~G~~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~ 102 (153)
T PF03383_consen 37 EEYRQFFGKEVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFIS 102 (153)
T ss_pred HHHHHHhCCEEeeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHH
Confidence 34456778888877766665554444444321111223333333 589999999887776666653
No 235
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=41.87 E-value=42 Score=27.42 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=27.6
Q ss_pred CcchHHhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHh
Q psy8429 119 GSDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD 167 (314)
Q Consensus 119 ~~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~ 167 (314)
..+..++.+|++.|++++ + |+. + .+..+.+++.+.|.+
T Consensus 125 ~~~~~~~~~i~~tPt~~i--n-G~~-------~-~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 125 DSQLARQLGITGTPTFFI--N-GKY-------V-VGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHHHT-SSSSEEEE--T-TCE-------E-ETTTSHHHHHHHHHH
T ss_pred HHHHHHHcCCccccEEEE--C-CEE-------e-CCCCCHHHHHHHHcC
Confidence 346679999999999998 3 321 1 467889999988864
No 236
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=40.60 E-value=1.3e+02 Score=21.25 Aligned_cols=74 Identities=9% Similarity=0.186 Sum_probs=41.5
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC--CcchHHhCCcccCceEEEecCCCCCCCCC
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE--GSDVFQMLRLNTAPIFMHFPAKGKPKPSD 147 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~--~~~lf~~~~v~svPtl~~f~p~~~~~~~~ 147 (314)
+.+|+.+ .|+.|+..+--.+.. ++-|-.++.+. .+++ +.-+-..+|++..=..+ ..
T Consensus 2 i~Ly~~~----~~p~c~kv~~~L~~~------------gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~-~~---- 59 (77)
T cd03040 2 ITLYQYK----TCPFCCKVRAFLDYH------------GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGG-DG---- 59 (77)
T ss_pred EEEEEcC----CCHHHHHHHHHHHHC------------CCceEEEECCchhHHHH-HHhCCCccCEEEECCCC-Cc----
Confidence 3567777 899999887443321 23333344433 2232 33455678988642111 00
Q ss_pred ccceeecccCHHHHHHHHHhhcC
Q psy8429 148 TLDIQRVGYSAEAIVKWIADRTD 170 (314)
Q Consensus 148 ~~~~~~~~~~a~~l~~fI~~~~~ 170 (314)
. .-.+...+.+|+.+++|
T Consensus 60 ~-----~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 60 Q-----QLVDSSVIISTLKTYLG 77 (77)
T ss_pred c-----EEEcHHHHHHHHHHHcC
Confidence 0 12367889999998875
No 237
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=40.18 E-value=56 Score=22.95 Aligned_cols=52 Identities=10% Similarity=0.248 Sum_probs=32.0
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC-cchHHhCCcccCceEEE
Q psy8429 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG-SDVFQMLRLNTAPIFMH 136 (314)
Q Consensus 71 V~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~-~~lf~~~~v~svPtl~~ 136 (314)
.+++.+ +|+.|+..+-..++.- -+.....+|..+. ++..+.-....+|++..
T Consensus 2 ~ly~~~----~~p~~~rv~~~L~~~g----------l~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFR----RCPYAMRARMALLLAG----------ITVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecC----CCcHHHHHHHHHHHcC----------CCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 356777 9999988765444221 1244556666543 44555556778999863
No 238
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=40.11 E-value=88 Score=25.72 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=22.1
Q ss_pred ecccCHHHHHHHHHhhcCCcceeeCCCCC
Q psy8429 153 RVGYSAEAIVKWIADRTDIQIRVFRPPNY 181 (314)
Q Consensus 153 ~~~~~a~~l~~fI~~~~~~~i~i~~p~~~ 181 (314)
..|.+.+++.+|+.++-|..+-..-|.+-
T Consensus 71 ~~G~Sd~eI~~~~v~RYG~~Vly~Pp~~~ 99 (126)
T TIGR03147 71 NEGKSNQQIIDFMTARFGDFVLYNPPFKW 99 (126)
T ss_pred HcCCCHHHHHHHHHHhcCCeEEecCCCCc
Confidence 46788999999999999987754444443
No 239
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=39.63 E-value=60 Score=32.07 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=24.9
Q ss_pred HHhhhhcchhhhhhhhhHHHHHHHHHHHhhhhhhhh
Q psy8429 197 FLYVKRNNLEFLYNKLMWGVAAVLFCFAMISGQMWN 232 (314)
Q Consensus 197 ~~~~~k~~~~~l~~~~~w~~~sl~~~~~~isG~mfn 232 (314)
++|+.+...+-+....+|+++++++++-.+-|--.+
T Consensus 26 l~~~~~~~~~~~~~~~~WavlTVvvvfe~tvGatl~ 61 (406)
T PF11744_consen 26 LLYFVGPLYDGFGQNAMWAVLTVVVVFEPTVGATLS 61 (406)
T ss_pred HHHHhhhhhhhhhhcchHHHhhhHhhccccccHHHH
Confidence 444444433445667899999999888877776655
No 240
>PRK12559 transcriptional regulator Spx; Provisional
Probab=38.95 E-value=30 Score=28.34 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=24.0
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS 120 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~ 120 (314)
+.+|+.+ +|+.|+... .|.++ .++-|-.+|+.+++
T Consensus 2 i~iY~~~----~C~~crkA~--------~~L~~----~gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTA----SCASCRKAK--------AWLEE----NQIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCC----CChHHHHHH--------HHHHH----cCCCeEEEEeeCCc
Confidence 4678888 999999854 34321 34677778887754
No 241
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.23 E-value=57 Score=29.56 Aligned_cols=44 Identities=7% Similarity=0.083 Sum_probs=34.0
Q ss_pred cchHHhCCcccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHhhcCCcc
Q psy8429 120 SDVFQMLRLNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIADRTDIQI 173 (314)
Q Consensus 120 ~~lf~~~~v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~~~~~~i 173 (314)
....+++||+++|++++ .+ .|.. .|..+.+.+.+-|++.++...
T Consensus 174 ~~~A~e~gI~gVP~fv~--d~-------~~~V-~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 174 EAAAQEMGIRGVPTFVF--DG-------KYAV-SGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHHCCCccCceEEE--cC-------cEee-cCCCCHHHHHHHHHHHHhccc
Confidence 45689999999999997 22 2344 477889999999999888664
No 242
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=37.24 E-value=39 Score=26.66 Aligned_cols=88 Identities=17% Similarity=0.261 Sum_probs=46.9
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc----chHHhCCcccCceEEEecCCCCCCCC
Q psy8429 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS----DVFQMLRLNTAPIFMHFPAKGKPKPS 146 (314)
Q Consensus 71 V~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~----~lf~~~~v~svPtl~~f~p~~~~~~~ 146 (314)
.+|+.+ +|+.|+....-+++ .++-|-.+|+.+++ ++-+-++..+.|.--++...+.. .
T Consensus 2 ~iY~~~----~C~~c~ka~~~L~~------------~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~--~ 63 (111)
T cd03036 2 KFYEYP----KCSTCRKAKKWLDE------------HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKS--Y 63 (111)
T ss_pred EEEECC----CCHHHHHHHHHHHH------------cCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCch--H
Confidence 467888 99999987765442 34778888887754 33333344455544444433211 0
Q ss_pred Ccccee--ecccCHHHHHHHHHhhcCCcceeeCCC
Q psy8429 147 DTLDIQ--RVGYSAEAIVKWIADRTDIQIRVFRPP 179 (314)
Q Consensus 147 ~~~~~~--~~~~~a~~l~~fI~~~~~~~i~i~~p~ 179 (314)
.+.... ....+.+++.+.+.++-. -++||.
T Consensus 64 ~~l~~~~~~~~~s~~e~~~~l~~~p~---LikRPI 95 (111)
T cd03036 64 RELGLKDKLPSLSEEEALELLSSDGM---LIKRPF 95 (111)
T ss_pred HhCCcccccccCCHHHHHHHHHhCcC---eeeCCE
Confidence 011110 113455667777766533 345553
No 243
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.91 E-value=1e+02 Score=30.17 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=78.3
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCC
Q psy8429 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (314)
Q Consensus 48 VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~ 127 (314)
.-+++++-.++. ++-.++|..=-+|+ . .|+-|-..-.....++-- ++++.-..+|-.--++=.+.-+
T Consensus 100 ppk~~q~vieqi-k~i~g~~~FETy~S-l----tC~nCPDVVQALN~msvl-------Np~I~H~~IdGa~Fq~Evear~ 166 (520)
T COG3634 100 PPKEDQDVIEQI-KAIDGDFHFETYFS-L----TCHNCPDVVQALNLMSVL-------NPRIKHTAIDGALFQDEVEARN 166 (520)
T ss_pred CCchhHHHHHHH-HhcCCceeEEEEEE-e----eccCChHHHHHHHHHHhc-------CCCceeEEecchhhHhHHHhcc
Confidence 446666666664 45556776555444 4 699998777766666532 2467777788777676677789
Q ss_pred cccCceEEEecCCCCCCCCCccceeecccCHHHHHHHHHh----hcCCcceeeCCCCCchhHHHHHHHHHHHHHHhhhhc
Q psy8429 128 LNTAPIFMHFPAKGKPKPSDTLDIQRVGYSAEAIVKWIAD----RTDIQIRVFRPPNYSGPMAFIMLFAIVAVFLYVKRN 203 (314)
Q Consensus 128 v~svPtl~~f~p~~~~~~~~~~~~~~~~~~a~~l~~fI~~----~~~~~i~i~~p~~~~~~~~~~~~~~~~~~~~~~~k~ 203 (314)
|.++|++++ +| + . +..|..+.|++..-+.. +....+.-+.|.|- ++.+.+.+...+++|..|+
T Consensus 167 IMaVPtvfl--nG-e-----~--fg~GRmtleeilaki~~gaa~~~ae~~~~k~~yDV---LvVGgGPAgaaAAiYaARK 233 (520)
T COG3634 167 IMAVPTVFL--NG-E-----E--FGQGRMTLEEILAKIDTGAAKRDAEEFNAKDAYDV---LVVGGGPAGAAAAIYAARK 233 (520)
T ss_pred ceecceEEE--cc-h-----h--hcccceeHHHHHHHhcCCccccchHHhhccCCceE---EEEcCCcchhHHHHHHHhh
Confidence 999999975 33 2 1 22344566666655533 11122344455552 3334556666667787665
Q ss_pred c
Q psy8429 204 N 204 (314)
Q Consensus 204 ~ 204 (314)
.
T Consensus 234 G 234 (520)
T COG3634 234 G 234 (520)
T ss_pred c
Confidence 3
No 244
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=34.51 E-value=52 Score=26.90 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=24.2
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS 120 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~ 120 (314)
+.+|+.+ +|+.|+....-++ + .++-|-.+|+.+.+
T Consensus 2 i~iY~~~----~C~~C~ka~~~L~--------~----~gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSP----SCTSCRKAKAWLE--------E----HDIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCC----CChHHHHHHHHHH--------H----cCCCcEEeeccCCh
Confidence 4577888 9999998554333 1 35777888887754
No 245
>CHL00036 ycf4 photosystem I assembly protein Ycf4
Probab=34.21 E-value=94 Score=27.20 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=31.5
Q ss_pred hhHHHH----HHHHHHHhhhhhhhhhhcCCCccccCCCceeEEcCCCcchhHHHHHHHHHHHHHHHHHHH
Q psy8429 212 LMWGVA----AVLFCFAMISGQMWNHIRGPPFIHKNQNGIAYIHGSSQGQFVLETYIVILLNAAIVVGMI 277 (314)
Q Consensus 212 ~~w~~~----sl~~~~~~isG~mfn~Ir~~P~~~~~~~Gi~~~~~g~~~QfgiE~~iv~~lY~~l~~~~i 277 (314)
..|+++ ++.+.+..+|-|.=. +=.|+.... .+.|+.+| +|+..|+++++.+-
T Consensus 22 y~wA~i~~~G~~GFll~g~SSYl~~--~Llpf~~~~--~i~FiPQG----------ivM~FYGi~gl~ls 77 (184)
T CHL00036 22 FFWAFILFLGSLGFLLVGISSYLGK--NLIPFLPSQ--QILFFPQG----------IVMCFYGIAGLFIS 77 (184)
T ss_pred HHHHHHHHhhhHHHHHhhhHHhhCc--CccccCChh--hCeEeCcc----------HHHHHHHHHHHHHH
Confidence 355544 444555555555442 236775422 28888877 67888999876543
No 246
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=33.58 E-value=1.3e+02 Score=24.73 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=22.1
Q ss_pred ecccCHHHHHHHHHhhcCCcceeeCCCCC
Q psy8429 153 RVGYSAEAIVKWIADRTDIQIRVFRPPNY 181 (314)
Q Consensus 153 ~~~~~a~~l~~fI~~~~~~~i~i~~p~~~ 181 (314)
..|.+.+++.+|+.++-|..+-..-|.+-
T Consensus 71 ~~G~sd~eI~~~~v~RYG~~Vl~~Pp~~~ 99 (126)
T PRK10144 71 AEGKSEVEIIGWMTERYGDFVRYNPPLTG 99 (126)
T ss_pred HcCCCHHHHHHHHHHhcCCeEEecCCCCc
Confidence 46788999999999999987754444443
No 247
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=33.33 E-value=52 Score=26.09 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=25.1
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcc
Q psy8429 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD 121 (314)
Q Consensus 71 V~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~ 121 (314)
.+|+.+ +|+.|+....-+++ .++-|-.+|+.+.+.
T Consensus 2 ~iY~~~----~C~~c~ka~~~L~~------------~~i~~~~idi~~~~~ 36 (117)
T TIGR01617 2 KVYGSP----NCTTCKKARRWLEA------------NGIEYQFIDIGEDGP 36 (117)
T ss_pred EEEeCC----CCHHHHHHHHHHHH------------cCCceEEEecCCChh
Confidence 467788 99999987765553 246777888877553
No 248
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=33.05 E-value=64 Score=21.40 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=30.2
Q ss_pred EEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcc--hHHhCCcccCceEEE
Q psy8429 72 MFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSD--VFQMLRLNTAPIFMH 136 (314)
Q Consensus 72 ~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~--lf~~~~v~svPtl~~ 136 (314)
+++.+ +|+.|+..+-.++...- +.....+|.++... +-+...-.++|.+..
T Consensus 3 ly~~~----~~~~~~~~~~~l~~~~i----------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFP----GSPRSLRVRLALEEKGL----------PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCC----CCccHHHHHHHHHHcCC----------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 56667 89999987766554321 23333444443322 445567778998764
No 249
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=31.57 E-value=49 Score=27.15 Aligned_cols=35 Identities=17% Similarity=0.406 Sum_probs=24.4
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS 120 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~ 120 (314)
+.+|+.+ +|+.|+... .|.++ .++-|-.+|+.+.+
T Consensus 2 i~iY~~~----~C~~crkA~--------~~L~~----~~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTIS----SCTSCKKAK--------TWLNA----HQLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCC----CCHHHHHHH--------HHHHH----cCCCeEEEECCCCC
Confidence 4567888 999999844 45432 35778888887643
No 250
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=31.53 E-value=61 Score=26.96 Aligned_cols=33 Identities=21% Similarity=0.505 Sum_probs=23.1
Q ss_pred HcCCCCccEEEEEeeCCC-CCCCccchhhHHHHH
Q psy8429 61 KNGPRNYSAIVMFTALAP-QRNCHICVSASDEYT 93 (314)
Q Consensus 61 ~~~~r~y~vvV~FtA~~~-~~~C~~C~~~~pefe 93 (314)
.++.|+...++.++.+++ --=|+.|+++.-||-
T Consensus 66 s~G~~~~~~v~v~~~~~~~~sPCG~CRQ~i~Ef~ 99 (134)
T COG0295 66 SEGKRKFDAVVVVADTGKPVSPCGACRQVLAEFC 99 (134)
T ss_pred HcCCCcEEEEEEEcCCCCCcCCcHHHHHHHHHhc
Confidence 457788777766665433 335999999988764
No 251
>PRK02542 photosystem I assembly protein Ycf4; Provisional
Probab=31.42 E-value=1.1e+02 Score=26.89 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=31.1
Q ss_pred hhHHHH----HHHHHHHhhhhhhhhhhcCCCccccCCCceeEEcCCCcchhHHHHHHHHHHHHHHHHHHH
Q psy8429 212 LMWGVA----AVLFCFAMISGQMWNHIRGPPFIHKNQNGIAYIHGSSQGQFVLETYIVILLNAAIVVGMI 277 (314)
Q Consensus 212 ~~w~~~----sl~~~~~~isG~mfn~Ir~~P~~~~~~~Gi~~~~~g~~~QfgiE~~iv~~lY~~l~~~~i 277 (314)
..|+++ ++.+.+..+|-|.=. +=.|+.... .+.|+.+| +|+..|+++++.+-
T Consensus 26 y~wA~i~~~G~~GFll~g~sSYl~~--~Llpf~~~~--~i~FiPQG----------ivM~FYGi~gl~ls 81 (188)
T PRK02542 26 YLWASMVTIGGIGFLLAGLSSYLGR--NLLPVGDPS--TLIFIPQG----------LAMGFYGVAGTLLA 81 (188)
T ss_pred HHHHHHHHhhhHHHHHhhhHHhhCc--CccccCChh--hCeEeCcc----------HHHHHHHHHHHHHH
Confidence 345544 444555555555432 225665532 28888877 67888999876543
No 252
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=31.04 E-value=58 Score=25.53 Aligned_cols=34 Identities=12% Similarity=0.289 Sum_probs=23.7
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc
Q psy8429 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS 120 (314)
Q Consensus 71 V~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~ 120 (314)
.+|+.+ +|+.|+....-+++ .++-|-.+|+.+.|
T Consensus 2 ~iy~~~----~C~~crka~~~L~~------------~~i~~~~~di~~~p 35 (105)
T cd03035 2 TLYGIK----NCDTVKKARKWLEA------------RGVAYTFHDYRKDG 35 (105)
T ss_pred EEEeCC----CCHHHHHHHHHHHH------------cCCCeEEEecccCC
Confidence 467888 99999985543331 34777788887754
No 253
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.68 E-value=3.3e+02 Score=24.06 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=27.6
Q ss_pred eEEeChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHHHHH
Q psy8429 48 VLRFDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDEYTI 94 (314)
Q Consensus 48 VI~Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pefe~ 94 (314)
++.++++.-+-. .+.+.....++.|.-. .|++|++.-|+.++
T Consensus 67 ~~~~~~~~~~~~-~G~~~~~v~v~~f~d~----~Cp~C~~~~~~l~~ 108 (244)
T COG1651 67 VLYLTPDGKDVV-LGNPYAPVTVVEFFDY----TCPYCKEAFPELKK 108 (244)
T ss_pred eeeecCCCCccc-ccCCCCCceEEEEecC----cCccHHHHHHHHHH
Confidence 566666543333 3333334567778877 99999888887776
No 254
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=26.39 E-value=80 Score=28.07 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=21.2
Q ss_pred EEEEEeeCCCCCCCccchhhHHHHHHHHHHh
Q psy8429 69 AIVMFTALAPQRNCHICVSASDEYTIVANSF 99 (314)
Q Consensus 69 vvV~FtA~~~~~~C~~C~~~~pefe~vA~s~ 99 (314)
+|=+||+. +|..|-....-+.++++..
T Consensus 1 vVELFTSQ----GCsSCPpAD~~L~~l~~~~ 27 (202)
T PF06764_consen 1 VVELFTSQ----GCSSCPPADRLLSELAARP 27 (202)
T ss_dssp EEEEEE-T----T-TT-HHHHHHHHHHHHHT
T ss_pred CeeEecCC----CCCCCcHHHHHHHHhhcCC
Confidence 46689999 9999999999999999874
No 255
>PHA02132 hypothetical protein
Probab=26.33 E-value=1.1e+02 Score=22.47 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=24.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy8429 256 GQFVLETYIVILLNAAIVVGMILISEAA 283 (314)
Q Consensus 256 ~QfgiE~~iv~~lY~~l~~~~i~L~~~~ 283 (314)
+||-.|-++.|+-|.+.++.+-.|.+.-
T Consensus 1 m~~lfelf~~svqys~ia~~vyvl~hg~ 28 (86)
T PHA02132 1 MNLLFELFILSVQYSIIAVMVYVLIHGF 28 (86)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4889999999999999999988887743
No 256
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=25.16 E-value=1.2e+02 Score=23.94 Aligned_cols=89 Identities=17% Similarity=0.268 Sum_probs=44.4
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCc----chHHhCCcccCceEEEecCCCCCCC
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGS----DVFQMLRLNTAPIFMHFPAKGKPKP 145 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~----~lf~~~~v~svPtl~~f~p~~~~~~ 145 (314)
+.+|+.+ +|+.|+....-+++ .++-|-.+|+.+++ ++.+-++..+.|.--++...+..
T Consensus 2 i~iY~~~----~C~~c~ka~~~L~~------------~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~-- 63 (115)
T cd03032 2 IKLYTSP----SCSSCRKAKQWLEE------------HQIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKA-- 63 (115)
T ss_pred EEEEeCC----CCHHHHHHHHHHHH------------CCCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHH--
Confidence 3467777 99999987765553 23666777776643 22222222223322334443211
Q ss_pred CCccceeecccCHHHHHHHHHhhcCCcceeeCCC
Q psy8429 146 SDTLDIQRVGYSAEAIVKWIADRTDIQIRVFRPP 179 (314)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fI~~~~~~~i~i~~p~ 179 (314)
..+........+.++..+.+.++-. -|+||.
T Consensus 64 ~k~l~~~~~~ls~~e~i~~l~~~p~---LikRPi 94 (115)
T cd03032 64 FKNLNIDIDELSLSELIRLISEHPS---LLRRPI 94 (115)
T ss_pred HHHcCCCcccCCHHHHHHHHHhChh---heeCCE
Confidence 0111111123455667777766533 255553
No 257
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=25.05 E-value=44 Score=25.29 Aligned_cols=50 Identities=10% Similarity=0.181 Sum_probs=38.8
Q ss_pred chhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEEEecC
Q psy8429 85 CVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFMHFPA 139 (314)
Q Consensus 85 C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~~f~p 139 (314)
.+......+.+.+.+. .++...=.+|+.++|++++.++|-..||++--.|
T Consensus 11 s~~a~~~l~~l~~~~l-----~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik~~P 60 (82)
T PF07689_consen 11 SERAIENLRRLCEEYL-----GGRYELEVIDVLEQPELAEEDRIVATPTLIKESP 60 (82)
T ss_dssp HHHHHHHHHHHHHCHC-----TTTEEEEEEETTTSHSHHTTTEEECHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhhC-----CCcEEEEEEEcccCHhHHhHCCeeecceEeeccC
Confidence 4555566666666544 3679999999999999999999999999875444
No 258
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=24.91 E-value=1.3e+02 Score=31.57 Aligned_cols=80 Identities=18% Similarity=0.348 Sum_probs=54.4
Q ss_pred eChhhHHHHHHcCCCCccEEEEEeeCCCCCCCccchhhHHH-H--HHHHHHhccccCCCCcEEEEEEECCCCcchHHhCC
Q psy8429 51 FDGQKYKEYIKNGPRNYSAIVMFTALAPQRNCHICVSASDE-Y--TIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLR 127 (314)
Q Consensus 51 Lt~~nf~~~v~~~~r~y~vvV~FtA~~~~~~C~~C~~~~pe-f--e~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~ 127 (314)
=.++-|++- ..+|.++++-.-.+ ||.=|+-|..| | +++|+-.. ....-+|||-+|-|++-+.|.
T Consensus 31 W~~eAf~~A---~~edkPIflSIGys----~CHWChVM~~ESf~d~eiA~~lN------~~FV~IKVDREERPDvD~~Ym 97 (667)
T COG1331 31 WGEEAFAKA---KEEDKPILLSIGYS----TCHWCHVMAHESFEDPEIAAILN------ENFVPVKVDREERPDVDSLYM 97 (667)
T ss_pred cCHHHHHHH---HHhCCCEEEEeccc----cccchHHHhhhcCCCHHHHHHHH------hCceeeeEChhhccCHHHHHH
Confidence 346777765 24577899988888 99999977654 2 34554443 457889999999887766554
Q ss_pred --------cccCceEEEecCCCCC
Q psy8429 128 --------LNTAPIFMHFPAKGKP 143 (314)
Q Consensus 128 --------v~svPtl~~f~p~~~~ 143 (314)
=-+=|--++.-|.+++
T Consensus 98 ~~~q~~tG~GGWPLtVfLTPd~kP 121 (667)
T COG1331 98 NASQAITGQGGWPLTVFLTPDGKP 121 (667)
T ss_pred HHHHHhccCCCCceeEEECCCCce
Confidence 3357866666665443
No 259
>PF04224 DUF417: Protein of unknown function, DUF417; InterPro: IPR007339 This family of uncharacterised proteins appears to be restricted to proteobacteria.
Probab=24.84 E-value=1e+02 Score=26.77 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=15.2
Q ss_pred CCcccchhhhhHHHHHHHHHHHHHh
Q psy8429 287 NDVRVRRTMAVVGLGLVAFFFSVIL 311 (314)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~fs~l~ 311 (314)
.+|+...+..+..++......|+|.
T Consensus 106 ~~p~~g~~G~ll~~~~flvTLSFL~ 130 (175)
T PF04224_consen 106 WSPKLGILGGLLAFGTFLVTLSFLF 130 (175)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555666666666666667663
No 260
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=24.71 E-value=88 Score=18.49 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHhhhhh
Q psy8429 211 KLMWGVAAVLFCFAMISGQ 229 (314)
Q Consensus 211 ~~~w~~~sl~~~~~~isG~ 229 (314)
|++..+.++..+++++||.
T Consensus 6 ~w~~~i~al~~lv~~iTGl 24 (27)
T PF03929_consen 6 KWFGDIFALFMLVFAITGL 24 (27)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555667888888899985
No 261
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=23.90 E-value=1.5e+02 Score=20.30 Aligned_cols=52 Identities=8% Similarity=0.039 Sum_probs=31.3
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCC----CcchHHhCCcccCceEEE
Q psy8429 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDE----GSDVFQMLRLNTAPIFMH 136 (314)
Q Consensus 71 V~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~----~~~lf~~~~v~svPtl~~ 136 (314)
.+|+.+ +|+.|+..+-..+...- ......+|..+ .++..+.-....+|++..
T Consensus 2 ~Ly~~~----~s~~~~~~~~~L~~~~l----------~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSP----TAPNPRRVRIFLAEKGI----------DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCC----CCcchHHHHHHHHHcCC----------CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 467777 99999988776554321 23334555432 234445455668999864
No 262
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=23.25 E-value=1.4e+02 Score=28.50 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=31.4
Q ss_pred hhhhcCCCccccCCC------ceeEEcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q psy8429 231 WNHIRGPPFIHKNQN------GIAYIHGSSQGQFVLETYIVILLNAAIVVGMILI 279 (314)
Q Consensus 231 fn~Ir~~P~~~~~~~------Gi~~~~~g~~~QfgiE~~iv~~lY~~l~~~~i~L 279 (314)
|-.++..|.+..++- |..|-..+.+.|||+=..++|.+|..+...++.+
T Consensus 42 fl~~~a~~~f~~~g~~~~f~~~~~W~p~~~~~~~G~l~~i~GTli~s~iA~liAv 96 (310)
T COG0573 42 FLLIEAIPAFQKFGLSLFFLFGTEWNPTNAQPQYGALPPIAGTLITSLIALLIAV 96 (310)
T ss_pred HHHHHHHHHHHhcCcceeeeecCccCCCCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 335556666665431 1133334447799999999999999886655544
No 263
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=22.77 E-value=70 Score=24.41 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=19.7
Q ss_pred cchHHhCCcccCceEEEecCCCC
Q psy8429 120 SDVFQMLRLNTAPIFMHFPAKGK 142 (314)
Q Consensus 120 ~~lf~~~~v~svPtl~~f~p~~~ 142 (314)
.++.++|+++++|+.+++.+.|+
T Consensus 85 ~~~~~~~~~~~~P~~~vid~~G~ 107 (114)
T cd02967 85 AELGMAYQVSKLPYAVLLDEAGV 107 (114)
T ss_pred HHHHhhcCCCCcCeEEEECCCCe
Confidence 45889999999999999987654
No 264
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=22.35 E-value=30 Score=22.11 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=5.2
Q ss_pred CCCCCccchhhH
Q psy8429 78 PQRNCHICVSAS 89 (314)
Q Consensus 78 ~~~~C~~C~~~~ 89 (314)
|++||+.|...-
T Consensus 2 ~ryyCdyC~~~~ 13 (38)
T PF06220_consen 2 PRYYCDYCKKYL 13 (38)
T ss_dssp -S-B-TTT--B-
T ss_pred cCeeccccccee
Confidence 678999998765
No 265
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=22.16 E-value=1.1e+02 Score=26.48 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=18.4
Q ss_pred HHHHHhhhhCCCeEEeChhhHHHHH
Q psy8429 36 VLHLSEMNAKKAVLRFDGQKYKEYI 60 (314)
Q Consensus 36 ~~~L~~l~~~~~VI~Lt~~nf~~~v 60 (314)
.+++.+.-.+++.|.+||+||-+.+
T Consensus 145 ~~~~~~~~~~~~~I~v~denf~~~m 169 (182)
T PF09323_consen 145 MSKLKKKYKKQKTIVVTDENFLEWM 169 (182)
T ss_pred HHHHHHHhccCCcEEEcchhHHHHH
Confidence 3455555456789999999998876
No 266
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=21.99 E-value=1.3e+02 Score=25.64 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=20.6
Q ss_pred EEeeCCCCCCCccchhhHHHHHHHHHHhc
Q psy8429 72 MFTALAPQRNCHICVSASDEYTIVANSFR 100 (314)
Q Consensus 72 ~FtA~~~~~~C~~C~~~~pefe~vA~s~~ 100 (314)
+|+-| .|+.|-.++|++.++...+.
T Consensus 2 ~F~dP----lc~~C~~~E~~l~kl~~~~~ 26 (176)
T PF13743_consen 2 LFVDP----LCSWCWGFEPELRKLKEEYG 26 (176)
T ss_dssp EEE-T----T-HHHHHHHHHHHHHHHHS-
T ss_pred eeeCC----CChHHHHhHHHHHHHHHHcC
Confidence 57888 99999999999999999986
No 267
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=21.60 E-value=1.3e+02 Score=25.15 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=24.9
Q ss_pred hhhhhhhhhHHHHHHH----HHHHhhhhhhh----hhhcCCCccccCCCc
Q psy8429 205 LEFLYNKLMWGVAAVL----FCFAMISGQMW----NHIRGPPFIHKNQNG 246 (314)
Q Consensus 205 ~~~l~~~~~w~~~sl~----~~~~~isG~mf----n~Ir~~P~~~~~~~G 246 (314)
+.++++|..|..+.++ +++..+=|+.| ...++.|..-.|+|.
T Consensus 4 ~~~~r~~~~~~~li~~~~~P~i~~~~~~~a~~~~~~~~~~lpvaVVd~D~ 53 (164)
T TIGR03061 4 KRLRKNKLLRIALIAIMLIPLLYGGLFLWAFWDPYGNLDNLPVAVVNEDK 53 (164)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCeEEEEECCC
Confidence 3567788877553222 22222333332 468899998888865
No 268
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=21.46 E-value=1.2e+02 Score=20.96 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=39.6
Q ss_pred EEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC-cchHHhCCcccCceEEEecCCCCCCCCCcc
Q psy8429 71 VMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG-SDVFQMLRLNTAPIFMHFPAKGKPKPSDTL 149 (314)
Q Consensus 71 V~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~-~~lf~~~~v~svPtl~~f~p~~~~~~~~~~ 149 (314)
.+++.+ +|+.|+..+-..+...-. .....+|..+. ++..+......+|.+.. ++ .
T Consensus 2 ~ly~~~----~~~~~~~v~~~l~~~gi~----------~~~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~-~------- 57 (73)
T cd03059 2 TLYSGP----DDVYSHRVRIVLAEKGVS----------VEIIDVDPDNPPEDLAELNPYGTVPTLVD--RD-L------- 57 (73)
T ss_pred EEEECC----CChhHHHHHHHHHHcCCc----------cEEEEcCCCCCCHHHHhhCCCCCCCEEEE--CC-E-------
Confidence 467777 899998886654432221 22334454443 34444455668887642 21 1
Q ss_pred ceeecccCHHHHHHHHHhh
Q psy8429 150 DIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 150 ~~~~~~~~a~~l~~fI~~~ 168 (314)
.-.+...+.+|+.++
T Consensus 58 ----~l~es~aI~~yL~~~ 72 (73)
T cd03059 58 ----VLYESRIIMEYLDER 72 (73)
T ss_pred ----EEEcHHHHHHHHHhh
Confidence 124567788888764
No 269
>COG4713 Predicted membrane protein [Function unknown]
Probab=20.99 E-value=73 Score=31.15 Aligned_cols=65 Identities=23% Similarity=0.357 Sum_probs=45.3
Q ss_pred hhhhhhcCC-Cccc---cCCCc-eeEEcCCCcchhHHHHH--HHHHHHHHHHHHHHHhhhcccccCCcccch
Q psy8429 229 QMWNHIRGP-PFIH---KNQNG-IAYIHGSSQGQFVLETY--IVILLNAAIVVGMILISEAATRKNDVRVRR 293 (314)
Q Consensus 229 ~mfn~Ir~~-P~~~---~~~~G-i~~~~~g~~~QfgiE~~--iv~~lY~~l~~~~i~L~~~~p~~~~~~~~~ 293 (314)
+|=+-+.+| ||.. ||-.| .+.++++.-.|||.-+. +-..+|..+++.+++.+....-+-|...++
T Consensus 328 qi~~~l~hPi~yv~i~iR~~h~~~s~~~~sni~qfg~l~~~~~~l~l~~i~~f~fVlIt~~~ki~i~k~~k~ 399 (489)
T COG4713 328 QISYFLKHPIPYVRIFIRDVHGSFSGFSGSNISQFGQLTSSFITLILPVIFTFLFVLITIRIKIKIDKTTKI 399 (489)
T ss_pred HHHHHHhCCcceEEeeeeecceeEeeeeccchhhheeeccccccccHHHHHHHHHHHHHHHHhheeeccceE
Confidence 333334443 6644 55578 89999999999997654 557889999999999888764444555544
No 270
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=20.86 E-value=3.2e+02 Score=19.40 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=39.6
Q ss_pred EEEEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCC----cchHHhCCcccCceEEEecCCCCCCC
Q psy8429 70 IVMFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEG----SDVFQMLRLNTAPIFMHFPAKGKPKP 145 (314)
Q Consensus 70 vV~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~----~~lf~~~~v~svPtl~~f~p~~~~~~ 145 (314)
+.+++.+ +|+.|+..+--.++. ++-|-.+|++.. ++..+.-.-..+|++.. ..++.
T Consensus 2 ~~Ly~~~----~sp~~~kv~~~L~~~------------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~--- 61 (77)
T cd03041 2 LELYEFE----GSPFCRLVREVLTEL------------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGV--- 61 (77)
T ss_pred ceEecCC----CCchHHHHHHHHHHc------------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCe---
Confidence 3467777 999998665433322 244444555442 23333334567898753 22211
Q ss_pred CCccceeecccCHHHHHHHHHhh
Q psy8429 146 SDTLDIQRVGYSAEAIVKWIADR 168 (314)
Q Consensus 146 ~~~~~~~~~~~~a~~l~~fI~~~ 168 (314)
.-.+...+.+|+.++
T Consensus 62 --------~l~es~~I~~yL~~~ 76 (77)
T cd03041 62 --------QMFESADIVKYLFKT 76 (77)
T ss_pred --------EEEcHHHHHHHHHHh
Confidence 124578888888765
No 271
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=20.12 E-value=1.8e+02 Score=20.14 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=26.2
Q ss_pred EEeeCCCCCCCccchhhHHHHHHHHHHhccccCCCCcEEEEEEECCCCcchHHhCCcccCceEE
Q psy8429 72 MFTALAPQRNCHICVSASDEYTIVANSFRYSQMYSNKLFFILVDFDEGSDVFQMLRLNTAPIFM 135 (314)
Q Consensus 72 ~FtA~~~~~~C~~C~~~~pefe~vA~s~~~~~~~~~~v~F~~vD~~~~~~lf~~~~v~svPtl~ 135 (314)
+++.. +|+.|+..+-..+...- +.....+|.++.....+..+-..+|.+.
T Consensus 3 Ly~~~----~~p~~~rvr~~L~~~gl----------~~~~~~~~~~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 3 LYIYE----HCPFCVKARMIAGLKNI----------PVEQIILQNDDEATPIRMIGAKQVPILE 52 (71)
T ss_pred eEecC----CCcHhHHHHHHHHHcCC----------CeEEEECCCCchHHHHHhcCCCccCEEE
Confidence 45566 89999977665443211 1222334433322333444456788875
No 272
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=20.02 E-value=98 Score=29.02 Aligned_cols=23 Identities=4% Similarity=-0.193 Sum_probs=17.6
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhh
Q psy8429 209 YNKLMWGVAAVLFCFAMISGQMW 231 (314)
Q Consensus 209 ~~~~~w~~~sl~~~~~~isG~mf 231 (314)
+|+++|..+|++++++++.+..+
T Consensus 11 ~~~k~~~~is~~l~~~~~~~~~~ 33 (292)
T PRK08578 11 YSNRQLIAIPLAVLLLSLLLLGG 33 (292)
T ss_pred cCchhHHHHHHHHHHHHHHHHHH
Confidence 47788999988888777776653
Done!