BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy843
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CPV3|RM42_MOUSE 39S ribosomal protein L42, mitochondrial OS=Mus musculus GN=Mrpl42
PE=2 SV=1
Length = 142
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 13 IAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYNVFKPKKEEF-- 70
+A+TADG T+VC+HP PYEH+ P+P + N Q ++ V K K+ E
Sbjct: 48 LALTADGRTIVCYHPSVDIPYEHTKPIPQPDLLHNNEETHEQILKAKLEVRKSKQLEQGP 107
Query: 71 VRQDLMNITFTNKHRWFPVRKMRQKKRYFKP 101
+ + L + +T KHRW+P + +++ P
Sbjct: 108 MIEQLSKVFYTTKHRWYPHGQYHNRRKKLNP 138
>sp|Q5R4S3|RM42_PONAB 39S ribosomal protein L42, mitochondrial OS=Pongo abelii GN=MRPL42
PE=2 SV=1
Length = 139
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 17/92 (18%)
Query: 12 KIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYN-VFKPKKEEF 70
++A+T+DG T+VC+HP PYEH+ P+P + V N +E ++ V K + EE
Sbjct: 48 ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPD--------PVHNNEETHDQVLKTRLEEK 99
Query: 71 VR--------QDLMNITFTNKHRWFPVRKMRQ 94
V + L + FT KHRW+P + R+
Sbjct: 100 VEHLEEGPMIEQLSKMFFTTKHRWYPHGRCRK 131
>sp|Q9Y6G3|RM42_HUMAN 39S ribosomal protein L42, mitochondrial OS=Homo sapiens GN=MRPL42
PE=1 SV=1
Length = 142
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 17/99 (17%)
Query: 12 KIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQEIYN-VFKPKKEEF 70
++A+T+DG T+VC+HP PYEH+ P+P + V N +E ++ V K + EE
Sbjct: 48 ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPD--------PVHNNEETHDQVLKTRLEEK 99
Query: 71 VR--------QDLMNITFTNKHRWFPVRKMRQKKRYFKP 101
V + L + FT KHRW+P + + ++ P
Sbjct: 100 VEHLEEGPMIEQLSKMFFTTKHRWYPHGRYHRCRKNLNP 138
>sp|P82927|RM42_BOVIN 39S ribosomal protein L42, mitochondrial OS=Bos taurus GN=MRPL42
PE=1 SV=2
Length = 142
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 17/99 (17%)
Query: 12 KIAITADGTTVVCWHPEQPFPYEHSLPL----PVTEQQSTNSILKVQNVQEIYNVFKPKK 67
++A+T+D T+VC+HP PYEH+ P+ PV + T+ ++ ++E K
Sbjct: 48 ELALTSDARTIVCYHPSVDIPYEHTKPIPRPDPVHNNEETHDLVLKTRLEE--------K 99
Query: 68 EEFVRQD-----LMNITFTNKHRWFPVRKMRQKKRYFKP 101
E + Q L + FT KHRW+P + +++R P
Sbjct: 100 SEHLEQGPMIEQLSKMFFTTKHRWYPRGQYHRRRRKLNP 138
>sp|P0C2B9|RM42_RAT 28S ribosomal protein L42, mitochondrial OS=Rattus norvegicus
GN=Mrpl42 PE=1 SV=1
Length = 141
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 12 KIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSILKVQNVQ-EIYNVFKPKKEEF 70
++A+T+DG T+VC+HP PYEH+ P+P + N Q ++ ++ K ++
Sbjct: 47 ELALTSDGRTIVCYHPSVDVPYEHTKPIPHPDLLHNNEETHEQILRTKLEGNHKHLEQGP 106
Query: 71 VRQDLMNITFTNKHRWFPVRKMRQKKRYFKP 101
+ + L + FT KHRW+P + + ++ P
Sbjct: 107 MIEQLSKVFFTTKHRWYPHGQYHRCRKKLNP 137
>sp|Q5R4T8|DCA13_PONAB DDB1- and CUL4-associated factor 13 OS=Pongo abelii GN=DCAF13 PE=2
SV=1
Length = 445
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 20 TTVVCWHPEQPFPY-----EHSLPLPVTEQQSTNSILKVQNVQEIYNV-FKPKKEEFVRQ 73
T +CW+P + F + +++L T ++ + +V + +V + P +EFV
Sbjct: 241 TNTICWNPMEAFIFTAANEDYNLYTFDMSALDTPVMVHMDHVSAVLDVDYSPTGKEFV-- 298
Query: 74 DLMNITFTNKHRWFPVRKMRQKKRY 98
+ +F R FPV K R ++ Y
Sbjct: 299 ---SASFDKSIRIFPVDKSRSREVY 320
>sp|Q6PAC3|DCA13_MOUSE DDB1- and CUL4-associated factor 13 OS=Mus musculus GN=Dcaf13 PE=2
SV=2
Length = 445
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 20 TTVVCWHPEQPFPY-----EHSLPLPVTEQQSTNSILKVQNVQEIYNV-FKPKKEEFVRQ 73
T +CW+P + F + +++L T ++ + +V + +V + P +EFV
Sbjct: 241 TNTICWNPMEAFNFTAANEDYNLYTFDMRALDTPVMVHMDHVSAVLDVDYSPTGKEFV-- 298
Query: 74 DLMNITFTNKHRWFPVRKMRQKKRY 98
+ +F R FPV K R ++ Y
Sbjct: 299 ---SASFDKSIRIFPVDKSRSREVY 320
>sp|Q9NV06|DCA13_HUMAN DDB1- and CUL4-associated factor 13 OS=Homo sapiens GN=DCAF13 PE=1
SV=2
Length = 445
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 20 TTVVCWHPEQPFPY-----EHSLPLPVTEQQSTNSILKVQNVQEIYNV-FKPKKEEFVRQ 73
T +CW+P + F + +++L T ++ + +V + +V + P +EFV
Sbjct: 241 TNTICWNPMEAFIFTAANEDYNLYTFDMRALDTPVMVHMDHVSAVLDVDYSPTGKEFV-- 298
Query: 74 DLMNITFTNKHRWFPVRKMRQKKRY 98
+ +F R FPV K R ++ Y
Sbjct: 299 ---SASFDKSIRIFPVDKSRSREVY 320
>sp|B8HMR8|RL6_CYAP4 50S ribosomal protein L6 OS=Cyanothece sp. (strain PCC 7425 /
ATCC 29141) GN=rplF PE=3 SV=1
Length = 191
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 4 KRLVPLTHKIAITADGTTVVCWHPEQPFPYEHSLPLPVTEQQSTNSIL 51
KR +P+ K+A+T DG+TV P+ LP V Q +S+L
Sbjct: 6 KRPIPIPDKVAVTIDGSTVKVKGPKGEL--SQVLPPEVVVVQENSSLL 51
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,919,959
Number of Sequences: 539616
Number of extensions: 1559535
Number of successful extensions: 4157
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4147
Number of HSP's gapped (non-prelim): 13
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)