Query psy843
Match_columns 109
No_of_seqs 70 out of 72
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 18:38:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3if4_A Integron cassette prote 53.5 11 0.00037 27.0 3.1 32 7-39 24-55 (119)
2 3oa6_A MALE-specific lethal 3 41.4 13 0.00045 26.0 1.9 19 17-35 21-42 (110)
3 3m9q_A Protein MALE-specific l 39.7 15 0.00053 25.2 2.0 25 11-35 15-42 (101)
4 3ch0_A Glycerophosphodiester p 33.9 16 0.00054 26.8 1.4 16 12-28 43-58 (272)
5 2otd_A Glycerophosphodiester p 33.6 16 0.00055 26.5 1.4 16 12-28 41-56 (247)
6 2o55_A Putative glycerophospho 31.3 18 0.00062 26.4 1.4 16 12-28 43-58 (258)
7 1vd6_A Glycerophosphoryl diest 31.3 18 0.00063 26.0 1.4 16 12-28 42-57 (224)
8 2oog_A Glycerophosphoryl diest 29.2 21 0.00072 26.6 1.4 16 12-28 59-74 (287)
9 1zcc_A Glycerophosphodiester p 29.0 21 0.00073 26.1 1.4 16 12-28 36-51 (248)
10 2pz0_A Glycerophosphoryl diest 28.1 23 0.00078 25.9 1.4 16 12-28 46-61 (252)
11 1ydy_A Glycerophosphoryl diest 28.1 22 0.00074 27.6 1.4 16 12-28 65-80 (356)
12 3no3_A Glycerophosphodiester p 27.2 24 0.00081 25.8 1.4 16 12-28 41-56 (238)
13 2rd1_A Putative outer membrane 26.2 37 0.0013 21.6 2.0 13 12-24 5-17 (62)
14 2k57_A Putative lipoprotein; s 26.1 40 0.0014 21.3 2.2 13 12-24 5-17 (61)
15 1o1z_A GDPD, glycerophosphodie 25.8 26 0.00089 25.5 1.4 16 12-28 47-62 (234)
16 3bdu_A Putative lipoprotein; X 25.7 38 0.0013 21.5 2.0 14 12-25 5-18 (62)
17 3l12_A Putative glycerophospho 25.4 26 0.0009 26.5 1.4 16 12-28 52-67 (313)
18 2rb6_A Uncharacterized protein 25.1 40 0.0014 21.3 2.0 13 12-24 5-17 (61)
19 3qvq_A Phosphodiesterase OLEI0 23.5 31 0.001 25.3 1.4 15 12-27 44-58 (252)
20 2jn0_A Hypothetical lipoprotei 23.0 40 0.0014 21.4 1.7 13 12-24 5-17 (61)
21 2xvs_A Tetratricopeptide repea 22.2 19 0.00065 26.7 0.0 17 1-17 26-42 (166)
22 1o22_A Orphan protein TM0875; 21.6 32 0.0011 25.6 1.1 26 63-89 132-157 (170)
23 2qe8_A Uncharacterized protein 21.4 49 0.0017 24.2 2.1 18 8-25 17-34 (343)
24 3i10_A Putative glycerophospho 21.3 35 0.0012 26.1 1.4 15 12-27 52-66 (278)
25 3ks6_A Glycerophosphoryl diest 21.2 36 0.0012 24.9 1.4 16 12-28 37-52 (250)
26 2ra2_A Putative lipoprotein; X 21.0 44 0.0015 21.4 1.6 13 12-24 6-18 (64)
27 4g7n_A Serine/threonine-protei 20.7 59 0.002 25.2 2.6 21 10-30 54-74 (225)
No 1
>3if4_A Integron cassette protein HFX_CASS5; integron cassette protein mobIle metagenome structural genomics PSI-2 protein structure initiative midwest center for structural genomics; HET: MSE; 2.18A {Unidentified}
Probab=53.53 E-value=11 Score=27.00 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=26.1
Q ss_pred ccccceeeeecCCcEEEEecCCCCCCcccccCC
Q psy843 7 VPLTHKIAITADGTTVVCWHPEQPFPYEHSLPL 39 (109)
Q Consensus 7 ~~l~~~iavTsDG~tIVcwHP~~~fPYEhTKPI 39 (109)
|.||.+|-|.+.||.+|.- -...|||=+---+
T Consensus 24 ~e~ia~IEvd~~Grihv~p-~~s~FpYIYREAm 55 (119)
T 3if4_A 24 QEFVAAIEIDGTGRIHVTP-GESQFPYIYREAM 55 (119)
T ss_dssp EEEEEEEEECTTSCEEEEE-SSCCCTTGGGGCS
T ss_pred HHHHHHeeeccCCcEEEee-CCCcCceeeeehe
Confidence 6789999999999999987 6778999654433
No 2
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=41.38 E-value=13 Score=25.98 Aligned_cols=19 Identities=26% Similarity=0.767 Sum_probs=14.2
Q ss_pred cCCcEEEEecCCC---CCCccc
Q psy843 17 ADGTTVVCWHPEQ---PFPYEH 35 (109)
Q Consensus 17 sDG~tIVcwHP~~---~fPYEh 35 (109)
+.|..|+||||+. ++=||-
T Consensus 21 ~~gEkVLc~h~d~~kg~llYeA 42 (110)
T 3oa6_A 21 HSGEKVLCFEPDPTKARVLYDA 42 (110)
T ss_dssp CTTCEEEEECSCTTSCCCEEEE
T ss_pred CCCCEEEEEecCCCCCcccEEE
Confidence 4577999999883 456874
No 3
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=39.67 E-value=15 Score=25.15 Aligned_cols=25 Identities=20% Similarity=0.577 Sum_probs=18.0
Q ss_pred ceeeeecCCcEEEEecCC---CCCCccc
Q psy843 11 HKIAITADGTTVVCWHPE---QPFPYEH 35 (109)
Q Consensus 11 ~~iavTsDG~tIVcwHP~---~~fPYEh 35 (109)
.....-+-|..++|||++ .+.+||-
T Consensus 15 ~~~~~f~~GEkVLc~h~d~~kg~~lYeA 42 (101)
T 3m9q_A 15 DETPLFHKGEIVLCYEPDKSKARVLYTS 42 (101)
T ss_dssp CCCCCCCTTCEEEEECCCTTSCCCEEEE
T ss_pred cCCCcccCCCEEEEEecCCCCCCcceEe
Confidence 334445678899999986 6778884
No 4
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=33.94 E-value=16 Score=26.82 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=12.4
Q ss_pred eeeeecCCcEEEEecCC
Q psy843 12 KIAITADGTTVVCWHPE 28 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP~ 28 (109)
.|.+|.|| .+||+|-.
T Consensus 43 DV~lTkDg-~lVv~HD~ 58 (272)
T 3ch0_A 43 DLVISKDN-RVVVSHDT 58 (272)
T ss_dssp EEEECTTC-CEEECSSS
T ss_pred eeeEcCCC-cEEEeCCC
Confidence 46789999 78888854
No 5
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=33.61 E-value=16 Score=26.52 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=12.3
Q ss_pred eeeeecCCcEEEEecCC
Q psy843 12 KIAITADGTTVVCWHPE 28 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP~ 28 (109)
.|-+|.|| .+||+|=.
T Consensus 41 DV~lTkDg-~lVv~HD~ 56 (247)
T 2otd_A 41 DAKLSKDG-EIFLLHDD 56 (247)
T ss_dssp EEEECTTC-CEEECSSS
T ss_pred EeeEccCC-cEEEECCC
Confidence 46789999 67888854
No 6
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=31.34 E-value=18 Score=26.43 Aligned_cols=16 Identities=19% Similarity=0.507 Sum_probs=13.1
Q ss_pred eeeeecCCcEEEEecCC
Q psy843 12 KIAITADGTTVVCWHPE 28 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP~ 28 (109)
.|-+|.|| .+||+|=.
T Consensus 43 DV~lTkDg-~lVv~HD~ 58 (258)
T 2o55_A 43 DLRVCKTG-EIVLFHGT 58 (258)
T ss_dssp EEEECTTS-CEEECCCS
T ss_pred EEEEecCC-eEEEEeCC
Confidence 46789999 78889976
No 7
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=31.33 E-value=18 Score=25.98 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=12.4
Q ss_pred eeeeecCCcEEEEecCC
Q psy843 12 KIAITADGTTVVCWHPE 28 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP~ 28 (109)
.|-+|.|| .+||+|-.
T Consensus 42 DV~lT~Dg-~lVv~HD~ 57 (224)
T 1vd6_A 42 DVWPTRDG-VFAVRHDP 57 (224)
T ss_dssp EEEECTTS-CEEECSCS
T ss_pred EeeEecCC-cEEEECCC
Confidence 36789999 78888854
No 8
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=29.21 E-value=21 Score=26.65 Aligned_cols=16 Identities=38% Similarity=0.571 Sum_probs=12.7
Q ss_pred eeeeecCCcEEEEecCC
Q psy843 12 KIAITADGTTVVCWHPE 28 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP~ 28 (109)
.|-+|.|| .+||+|-.
T Consensus 59 DV~lTkDG-~lVv~HD~ 74 (287)
T 2oog_A 59 DLQRTKDG-HLVAMHDE 74 (287)
T ss_dssp EEEECTTC-CEEECSSS
T ss_pred EeeEccCC-cEEEECCC
Confidence 46789999 78888865
No 9
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=29.05 E-value=21 Score=26.09 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=12.8
Q ss_pred eeeeecCCcEEEEecCC
Q psy843 12 KIAITADGTTVVCWHPE 28 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP~ 28 (109)
.|-+|.|| .+||+|-.
T Consensus 36 DV~lTkDg-~lVv~HD~ 51 (248)
T 1zcc_A 36 DVRESADG-VLYVIHDE 51 (248)
T ss_dssp EEEECTTC-CEEECSSS
T ss_pred EeeEcCCC-CEEEECCC
Confidence 46789999 78888865
No 10
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=28.13 E-value=23 Score=25.94 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=12.5
Q ss_pred eeeeecCCcEEEEecCC
Q psy843 12 KIAITADGTTVVCWHPE 28 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP~ 28 (109)
.|-+|.|| .+||+|=.
T Consensus 46 DV~lTkDG-~lVv~HD~ 61 (252)
T 2pz0_A 46 DVQLTKDG-HLVVIHDE 61 (252)
T ss_dssp EEEECTTC-CEEECSSS
T ss_pred EEEEecCC-eEEEEcCC
Confidence 46789999 78888854
No 11
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A
Probab=28.13 E-value=22 Score=27.56 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=12.6
Q ss_pred eeeeecCCcEEEEecCC
Q psy843 12 KIAITADGTTVVCWHPE 28 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP~ 28 (109)
.|.+|.|| .+||+|=.
T Consensus 65 DV~lTkDg-~lVv~HD~ 80 (356)
T 1ydy_A 65 DLVMTKDD-NLVVLHDH 80 (356)
T ss_dssp EEEECTTS-CEEECSSS
T ss_pred eeEECCCC-cEEEeCCC
Confidence 46789999 78888854
No 12
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=27.23 E-value=24 Score=25.83 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=12.5
Q ss_pred eeeeecCCcEEEEecCC
Q psy843 12 KIAITADGTTVVCWHPE 28 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP~ 28 (109)
.|-+|.|| .+||+|-.
T Consensus 41 DV~lT~Dg-~~Vv~HD~ 56 (238)
T 3no3_A 41 DVHLTADN-VLVVYHDN 56 (238)
T ss_dssp EEEECTTS-CEEECSSS
T ss_pred EeeEccCC-cEEEECCC
Confidence 46789999 78888854
No 13
>2rd1_A Putative outer membrane lipoprotein; X-RAY, NESG, Q7CQI7, STR87A, structural genomics, PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=26.25 E-value=37 Score=21.57 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=10.4
Q ss_pred eeeeecCCcEEEE
Q psy843 12 KIAITADGTTVVC 24 (109)
Q Consensus 12 ~iavTsDG~tIVc 24 (109)
.+.-|.||++||+
T Consensus 5 yvitt~DG~~IvT 17 (62)
T 2rd1_A 5 YVMTTKNGQTIVT 17 (62)
T ss_dssp EEEEETTSCEEEE
T ss_pred eEEEeCCCcEEEc
Confidence 4556999999996
No 14
>2k57_A Putative lipoprotein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas syringae PV} SCOP: b.38.1.6
Probab=26.14 E-value=40 Score=21.31 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=10.4
Q ss_pred eeeeecCCcEEEE
Q psy843 12 KIAITADGTTVVC 24 (109)
Q Consensus 12 ~iavTsDG~tIVc 24 (109)
.+.-|.||++||+
T Consensus 5 yvitt~DG~~IvT 17 (61)
T 2k57_A 5 TVITLNDGREIQA 17 (61)
T ss_dssp EEEEESSSCEEEE
T ss_pred eEEEeCCCcEEEc
Confidence 4556999999995
No 15
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=25.76 E-value=26 Score=25.52 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=12.7
Q ss_pred eeeeecCCcEEEEecCC
Q psy843 12 KIAITADGTTVVCWHPE 28 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP~ 28 (109)
.|-+|.|| .+||+|-.
T Consensus 47 DV~lTkDG-~lVv~HD~ 62 (234)
T 1o1z_A 47 DVRLSKDG-KVVVSHDE 62 (234)
T ss_dssp EEEECTTS-CEEECSSS
T ss_pred EeeEecCC-CEEEEcCC
Confidence 46789999 78888864
No 16
>3bdu_A Putative lipoprotein; X_RAY, NESG, Q6D8G1, structural genomics, PSI-2, protein structure initiative; 1.90A {Pectobacterium atrosepticum SCRI1043} SCOP: b.38.1.6
Probab=25.67 E-value=38 Score=21.46 Aligned_cols=14 Identities=36% Similarity=0.385 Sum_probs=10.8
Q ss_pred eeeeecCCcEEEEe
Q psy843 12 KIAITADGTTVVCW 25 (109)
Q Consensus 12 ~iavTsDG~tIVcw 25 (109)
.+.-|.||++||.-
T Consensus 5 yvitt~DG~~IvT~ 18 (62)
T 3bdu_A 5 YVLHTNDGRTIVAE 18 (62)
T ss_dssp EEEEETTSCEEEEE
T ss_pred eEEEECCCcEEEcC
Confidence 35569999999963
No 17
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=25.35 E-value=26 Score=26.51 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=12.2
Q ss_pred eeeeecCCcEEEEecCC
Q psy843 12 KIAITADGTTVVCWHPE 28 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP~ 28 (109)
.|-+|.|| .+||+|=.
T Consensus 52 DV~lTkDg-~~Vv~HD~ 67 (313)
T 3l12_A 52 DVVMTADG-VPVVTHNH 67 (313)
T ss_dssp EEEECTTS-CEEECSSS
T ss_pred EEEECCCC-CEEEECCc
Confidence 46789999 77888854
No 18
>2rb6_A Uncharacterized protein; NESG, Q8EI81_sheon, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.50A {Shewanella oneidensis} SCOP: b.38.1.6
Probab=25.09 E-value=40 Score=21.34 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=10.2
Q ss_pred eeeeecCCcEEEE
Q psy843 12 KIAITADGTTVVC 24 (109)
Q Consensus 12 ~iavTsDG~tIVc 24 (109)
.|.-|.||++||+
T Consensus 5 yvitT~DG~~IvT 17 (61)
T 2rb6_A 5 YIMSTKDGKMITS 17 (61)
T ss_dssp EEEEETTSCEEEE
T ss_pred EEEEeCCCcEEEc
Confidence 3455999999995
No 19
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=23.49 E-value=31 Score=25.31 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=11.1
Q ss_pred eeeeecCCcEEEEecC
Q psy843 12 KIAITADGTTVVCWHP 27 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP 27 (109)
.|-+|.|| .+||+|=
T Consensus 44 DV~lT~Dg-~~Vv~HD 58 (252)
T 3qvq_A 44 DVMLSGDG-IPVIFHD 58 (252)
T ss_dssp EEEECTTS-CEEECCC
T ss_pred EEEECCCC-cEEEECC
Confidence 36689999 6777774
No 20
>2jn0_A Hypothetical lipoprotein YGDR; solution structure, PSI-2 target, structural genomics, protein structure initiative; NMR {Escherichia coli} SCOP: b.38.1.6 PDB: 3fif_A
Probab=23.00 E-value=40 Score=21.37 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=10.2
Q ss_pred eeeeecCCcEEEE
Q psy843 12 KIAITADGTTVVC 24 (109)
Q Consensus 12 ~iavTsDG~tIVc 24 (109)
.|.-|.||++||+
T Consensus 5 yvitT~DG~~IvT 17 (61)
T 2jn0_A 5 YVMATKDGRMILT 17 (61)
T ss_dssp CEEEETTSCEEEB
T ss_pred EEEEeCCCcEEEc
Confidence 3455999999994
No 21
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=22.20 E-value=19 Score=26.74 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=14.2
Q ss_pred Ccccccccccceeeeec
Q psy843 1 MRTKRLVPLTHKIAITA 17 (109)
Q Consensus 1 ~~~~~~~~l~~~iavTs 17 (109)
|++||||+++..|.-..
T Consensus 26 lK~KRL~~~~ssL~~~~ 42 (166)
T 2xvs_A 26 VKTKKLQSMLGSLRPAH 42 (166)
T ss_dssp CCHHHHHHHHHTCCGGG
T ss_pred ccHHHHHHHHHhcchhh
Confidence 68999999999887654
No 22
>1o22_A Orphan protein TM0875; structural genomics, joint center for struct genomics, JCSG, protein structure initiative, PSI, unknown; 2.00A {Thermotoga maritima} SCOP: d.238.1.1
Probab=21.61 E-value=32 Score=25.60 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=19.2
Q ss_pred hcCCChhhhHHHHhhhhccccCccccc
Q psy843 63 FKPKKEEFVRQDLMNITFTNKHRWFPV 89 (109)
Q Consensus 63 ~k~k~~e~~~eELsKmfyTTKHRWyPr 89 (109)
.|+|...-+.+|.||-||-|| .|=|-
T Consensus 132 vk~knr~e~v~~fmkyffesk-gw~pg 157 (170)
T 1o22_A 132 VKKKNRNELVEEFMKYFFESK-GWNPG 157 (170)
T ss_dssp STTCCHHHHHHHHHHHHHHHH-TCCGG
T ss_pred hhhccHHHHHHHHHHHHHhcc-CCCCC
Confidence 356665556799999999998 57653
No 23
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=21.41 E-value=49 Score=24.17 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=15.8
Q ss_pred cccceeeeecCCcEEEEe
Q psy843 8 PLTHKIAITADGTTVVCW 25 (109)
Q Consensus 8 ~l~~~iavTsDG~tIVcw 25 (109)
+.+..||+.+||+.+|+-
T Consensus 17 ~~p~~va~~~~g~~~v~~ 34 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSL 34 (343)
T ss_dssp SCEEEEEECTTSCEEEEE
T ss_pred CCcceEEECCCCCEEEEe
Confidence 468899999999999984
No 24
>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.33 E-value=35 Score=26.09 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=11.9
Q ss_pred eeeeecCCcEEEEecC
Q psy843 12 KIAITADGTTVVCWHP 27 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP 27 (109)
.|.+|.|| .+||+|-
T Consensus 52 Dv~~TkDg-~~vv~HD 66 (278)
T 3i10_A 52 DIQKTKDG-QLILMHD 66 (278)
T ss_dssp EEEECTTS-CEEECSS
T ss_pred EEEECCCC-eEEEecC
Confidence 46789999 6778885
No 25
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=21.17 E-value=36 Score=24.93 Aligned_cols=16 Identities=38% Similarity=0.567 Sum_probs=11.9
Q ss_pred eeeeecCCcEEEEecCC
Q psy843 12 KIAITADGTTVVCWHPE 28 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP~ 28 (109)
.|-+|.|| .+||+|=.
T Consensus 37 DV~lT~Dg-~~Vv~HD~ 52 (250)
T 3ks6_A 37 DLHPTADG-AIVVHHDP 52 (250)
T ss_dssp EEEECTTS-CEEECSSS
T ss_pred EEeEccCC-CEEEECCC
Confidence 46789999 67777743
No 26
>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=21.02 E-value=44 Score=21.36 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=10.3
Q ss_pred eeeeecCCcEEEE
Q psy843 12 KIAITADGTTVVC 24 (109)
Q Consensus 12 ~iavTsDG~tIVc 24 (109)
.|.-|.||++||+
T Consensus 6 yVitt~DG~~IvT 18 (64)
T 2ra2_A 6 YVMHTNDGRSIVT 18 (64)
T ss_dssp EEEEETTSCEEEC
T ss_pred EEEEeCCCcEEEc
Confidence 4556999999994
No 27
>4g7n_A Serine/threonine-protein kinase PLK4; POLO BOX, kinase targeting and regulation, asterless, centri transferase; 2.30A {Drosophila melanogaster}
Probab=20.74 E-value=59 Score=25.21 Aligned_cols=21 Identities=19% Similarity=0.514 Sum_probs=17.4
Q ss_pred cceeeeecCCcEEEEecCCCC
Q psy843 10 THKIAITADGTTVVCWHPEQP 30 (109)
Q Consensus 10 ~~~iavTsDG~tIVcwHP~~~ 30 (109)
.+.+.|.+||.+|+-|+|...
T Consensus 54 ~ev~~Is~dG~~I~iy~p~~~ 74 (225)
T 4g7n_A 54 NDICRISDDGQRIIIYQPDPG 74 (225)
T ss_dssp EEEEEECTTSCEEEEECCTTT
T ss_pred eEEEEEcCCCCEEEEEeCCCC
Confidence 456778999999999999753
Done!