Query psy843
Match_columns 109
No_of_seqs 70 out of 72
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 18:38:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy843.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/843hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vd6a1 c.1.18.3 (A:8-224) Put 49.2 3.1 0.00023 26.8 1.4 16 12-28 35-50 (217)
2 d1ydya1 c.1.18.3 (A:29-356) Gl 47.6 3.3 0.00024 28.2 1.4 16 12-28 37-52 (328)
3 d2ra2a1 b.38.1.6 (A:4-56) Unch 47.3 4.5 0.00033 23.8 1.8 14 11-24 2-15 (53)
4 d1zcca1 c.1.18.3 (A:1-240) Gly 42.3 5 0.00037 26.9 1.6 16 12-28 36-51 (240)
5 d3bdua1 b.38.1.6 (A:2-54) Unch 41.9 6.9 0.0005 22.8 2.0 13 12-24 4-16 (53)
6 d1o1za_ c.1.18.3 (A:) Hypothet 40.7 5 0.00037 26.3 1.4 14 13-27 40-53 (226)
7 d2rb6a1 b.38.1.6 (A:25-76) Unc 40.2 8.2 0.00059 22.4 2.1 13 12-24 4-16 (52)
8 d1so7a_ b.68.1.1 (A:) Sialidas 35.5 9.9 0.00072 26.2 2.3 14 12-25 21-34 (374)
9 d1xpja_ c.108.1.18 (A:) Hypoth 28.0 6.5 0.00048 25.6 0.2 26 12-41 3-28 (124)
10 d1hzua2 b.70.2.1 (A:118-543) C 27.7 14 0.001 25.8 2.0 16 9-24 63-78 (426)
11 d1ri6a_ b.69.11.1 (A:) Putativ 27.7 15 0.0011 23.4 2.0 17 9-25 38-55 (333)
12 d2p4oa1 b.68.6.3 (A:4-305) Hyp 26.7 15 0.0011 24.7 2.1 20 9-28 29-48 (302)
13 d1k32a3 b.69.9.1 (A:320-679) T 26.4 18 0.0013 23.2 2.2 20 9-28 316-335 (360)
14 d2rd1a1 b.38.1.6 (A:22-73) Put 26.2 19 0.0014 20.8 2.1 14 12-25 3-16 (52)
15 d2f5ka1 b.34.13.3 (A:6-88) Mor 24.4 14 0.001 22.8 1.3 16 18-35 8-23 (83)
16 d1o22a_ d.238.1.1 (A:) Hypothe 24.3 12 0.00089 25.6 1.1 26 63-89 115-140 (149)
17 d1q7fa_ b.68.9.1 (A:) Brain tu 24.3 19 0.0014 23.9 2.2 16 9-24 24-39 (279)
18 d1m8aa_ d.9.1.1 (A:) Macrophag 24.0 26 0.0019 19.7 2.4 18 11-29 32-49 (61)
19 d2k57a1 b.38.1.6 (A:2-53) Unch 22.7 23 0.0017 20.4 2.0 13 12-24 4-16 (52)
20 d2jn0a1 b.38.1.6 (A:4-53) Hypo 21.9 21 0.0015 20.5 1.7 12 13-24 3-14 (50)
No 1
>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]}
Probab=49.17 E-value=3.1 Score=26.81 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.0
Q ss_pred eeeeecCCcEEEEecCC
Q psy843 12 KIAITADGTTVVCWHPE 28 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP~ 28 (109)
.|-+|+|| .+||+|-.
T Consensus 35 DV~~TkDg-~~vv~HD~ 50 (217)
T d1vd6a1 35 DVWPTRDG-VFAVRHDP 50 (217)
T ss_dssp EEEECTTS-CEEECSCS
T ss_pred EEEEecCC-CEEEeccc
Confidence 46789999 88889964
No 2
>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]}
Probab=47.62 E-value=3.3 Score=28.19 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=13.1
Q ss_pred eeeeecCCcEEEEecCC
Q psy843 12 KIAITADGTTVVCWHPE 28 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP~ 28 (109)
.|-+|.|| .+||+|-.
T Consensus 37 DV~lTkDg-~~Vv~HD~ 52 (328)
T d1ydya1 37 DLVMTKDD-NLVVLHDH 52 (328)
T ss_dssp EEEECTTS-CEEECSSS
T ss_pred eeeEccCC-cEEEECCc
Confidence 46799999 88999953
No 3
>d2ra2a1 b.38.1.6 (A:4-56) Uncharacterized protein YgdI {Salmonella typhimurium [TaxId: 90371]}
Probab=47.26 E-value=4.5 Score=23.77 Aligned_cols=14 Identities=29% Similarity=0.480 Sum_probs=11.4
Q ss_pred ceeeeecCCcEEEE
Q psy843 11 HKIAITADGTTVVC 24 (109)
Q Consensus 11 ~~iavTsDG~tIVc 24 (109)
.-|.-|.||+|||+
T Consensus 2 ~yvm~t~DG~~IvT 15 (53)
T d2ra2a1 2 NYVMHTNDGRSIVT 15 (53)
T ss_dssp CEEEEETTSCEEEC
T ss_pred CeEEEecCCcEEEe
Confidence 35678999999994
No 4
>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]}
Probab=42.29 E-value=5 Score=26.91 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=12.9
Q ss_pred eeeeecCCcEEEEecCC
Q psy843 12 KIAITADGTTVVCWHPE 28 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP~ 28 (109)
.|-+|+|| .+||+|..
T Consensus 36 Dv~~TkDg-~~Vv~HD~ 51 (240)
T d1zcca1 36 DVRESADG-VLYVIHDE 51 (240)
T ss_dssp EEEECTTC-CEEECSSS
T ss_pred EEEEecCC-CEEEeccc
Confidence 36789999 88889964
No 5
>d3bdua1 b.38.1.6 (A:2-54) Uncharacterized protein ECA1013 {Erwinia carotovora [TaxId: 554]}
Probab=41.87 E-value=6.9 Score=22.81 Aligned_cols=13 Identities=38% Similarity=0.524 Sum_probs=10.9
Q ss_pred eeeeecCCcEEEE
Q psy843 12 KIAITADGTTVVC 24 (109)
Q Consensus 12 ~iavTsDG~tIVc 24 (109)
.|..|.||++||.
T Consensus 4 yv~~t~dG~~i~T 16 (53)
T d3bdua1 4 YVLHTNDGRTIVA 16 (53)
T ss_dssp EEEEETTSCEEEE
T ss_pred eEEEecCCcEEEe
Confidence 4668999999996
No 6
>d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]}
Probab=40.68 E-value=5 Score=26.34 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=12.0
Q ss_pred eeeecCCcEEEEecC
Q psy843 13 IAITADGTTVVCWHP 27 (109)
Q Consensus 13 iavTsDG~tIVcwHP 27 (109)
|-+|+|| .+||+|-
T Consensus 40 v~~T~Dg-~~Vv~HD 53 (226)
T d1o1za_ 40 VRLSKDG-KVVVSHD 53 (226)
T ss_dssp EEECTTS-CEEECSS
T ss_pred EEEccCC-CEEeecc
Confidence 6789999 7889995
No 7
>d2rb6a1 b.38.1.6 (A:25-76) Uncharacterized protein SO0963 {Shewanella oneidensis [TaxId: 70863]}
Probab=40.24 E-value=8.2 Score=22.39 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=10.9
Q ss_pred eeeeecCCcEEEE
Q psy843 12 KIAITADGTTVVC 24 (109)
Q Consensus 12 ~iavTsDG~tIVc 24 (109)
.|..|.||++||.
T Consensus 4 yvm~t~dG~~i~T 16 (52)
T d2rb6a1 4 YIMSTKDGKMITS 16 (52)
T ss_dssp EEEEETTSCEEEE
T ss_pred eEEEeCCCcEEEe
Confidence 4668999999995
No 8
>d1so7a_ b.68.1.1 (A:) Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.51 E-value=9.9 Score=26.18 Aligned_cols=14 Identities=0% Similarity=0.188 Sum_probs=12.1
Q ss_pred eeeeecCCcEEEEe
Q psy843 12 KIAITADGTTVVCW 25 (109)
Q Consensus 12 ~iavTsDG~tIVcw 25 (109)
.|+.++||++||||
T Consensus 21 ~lv~~~~g~~l~A~ 34 (374)
T d1so7a_ 21 ALLYLPGQQSLLAF 34 (374)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEEEcCCCEEEEE
Confidence 57778999999999
No 9
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}
Probab=27.97 E-value=6.5 Score=25.64 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=19.2
Q ss_pred eeeeecCCcEEEEecCCCCCCcccccCCCC
Q psy843 12 KIAITADGTTVVCWHPEQPFPYEHSLPLPV 41 (109)
Q Consensus 12 ~iavTsDG~tIVcwHP~~~fPYEhTKPIp~ 41 (109)
.|++.=|| || |.+...+ |++++|++.
T Consensus 3 ~i~~DiDG-TI-~~~~~~~--y~~~~P~~~ 28 (124)
T d1xpja_ 3 KLIVDLDG-TL-TQANTSD--YRNVLPRLD 28 (124)
T ss_dssp EEEECSTT-TT-BCCCCSC--GGGCCBCHH
T ss_pred EEEEeCCC-Ce-ECCCCCC--cCccCcCHH
Confidence 47788899 65 6665544 889999875
No 10
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.72 E-value=14 Score=25.79 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=13.4
Q ss_pred ccceeeeecCCcEEEE
Q psy843 9 LTHKIAITADGTTVVC 24 (109)
Q Consensus 9 l~~~iavTsDG~tIVc 24 (109)
-+..|++++||+.+++
T Consensus 63 ~~~~vafSPDGk~l~~ 78 (426)
T d1hzua2 63 AVHISRMSASGRYLLV 78 (426)
T ss_dssp SEEEEEECTTSCEEEE
T ss_pred CeeEEEECCCCCEEEE
Confidence 4788999999998865
No 11
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}
Probab=27.68 E-value=15 Score=23.44 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=13.3
Q ss_pred ccceeeeecCCcEE-EEe
Q psy843 9 LTHKIAITADGTTV-VCW 25 (109)
Q Consensus 9 l~~~iavTsDG~tI-Vcw 25 (109)
-++.||+++||+.+ |+-
T Consensus 38 ~v~~la~spDG~~L~v~~ 55 (333)
T d1ri6a_ 38 QVQPMVVSPDKRYLYVGV 55 (333)
T ss_dssp CCCCEEECTTSSEEEEEE
T ss_pred CEeEEEEeCCCCEEEEEE
Confidence 46789999999987 543
No 12
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}
Probab=26.72 E-value=15 Score=24.67 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=14.9
Q ss_pred ccceeeeecCCcEEEEecCC
Q psy843 9 LTHKIAITADGTTVVCWHPE 28 (109)
Q Consensus 9 l~~~iavTsDG~tIVcwHP~ 28 (109)
+++.||+.+||+.+|+=+..
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~ 48 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEV 48 (302)
T ss_dssp CEEEEEECTTSCEEEEETTT
T ss_pred CcCCEEECCCCCEEEEeCCC
Confidence 47788899998877775543
No 13
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=26.37 E-value=18 Score=23.15 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=15.7
Q ss_pred ccceeeeecCCcEEEEecCC
Q psy843 9 LTHKIAITADGTTVVCWHPE 28 (109)
Q Consensus 9 l~~~iavTsDG~tIVcwHP~ 28 (109)
-+..+++++||+.|++.--+
T Consensus 316 ~v~~~~~SpDG~~l~~~~~D 335 (360)
T d1k32a3 316 NLTDLRLSADRKTVMVRKDD 335 (360)
T ss_dssp EEEEEEECTTSCEEEEEETT
T ss_pred CcCEEEECCCCCEEEEEECC
Confidence 36678999999999886544
No 14
>d2rd1a1 b.38.1.6 (A:22-73) Putative outer membrane lipoprotein STM1585 {Salmonella typhimurium [TaxId: 90371]}
Probab=26.19 E-value=19 Score=20.83 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=10.8
Q ss_pred eeeeecCCcEEEEe
Q psy843 12 KIAITADGTTVVCW 25 (109)
Q Consensus 12 ~iavTsDG~tIVcw 25 (109)
-|.=|.||+|||..
T Consensus 3 yvm~t~dGr~I~t~ 16 (52)
T d2rd1a1 3 YVMTTKNGQTIVTQ 16 (52)
T ss_dssp EEEEETTSCEEEEE
T ss_pred eEEEeCCCcEEEcC
Confidence 35568999999964
No 15
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.40 E-value=14 Score=22.80 Aligned_cols=16 Identities=44% Similarity=1.074 Sum_probs=12.5
Q ss_pred CCcEEEEecCCCCCCccc
Q psy843 18 DGTTVVCWHPEQPFPYEH 35 (109)
Q Consensus 18 DG~tIVcwHP~~~fPYEh 35 (109)
-|..|+|||. ++.||-
T Consensus 8 ~ge~Vlc~~~--~~lYeA 23 (83)
T d2f5ka1 8 EGERVLCFHG--PLLYEA 23 (83)
T ss_dssp TTCEEEEESS--SSEEEE
T ss_pred CCCEEEEEEC--CeeEEe
Confidence 4779999996 577874
No 16
>d1o22a_ d.238.1.1 (A:) Hypothetical protein TM0875 {Thermotoga maritima [TaxId: 2336]}
Probab=24.29 E-value=12 Score=25.58 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=19.1
Q ss_pred hcCCChhhhHHHHhhhhccccCccccc
Q psy843 63 FKPKKEEFVRQDLMNITFTNKHRWFPV 89 (109)
Q Consensus 63 ~k~k~~e~~~eELsKmfyTTKHRWyPr 89 (109)
.|++...-+.+|.||-||-|| .|=|-
T Consensus 115 vk~knr~e~v~~fmkyffesk-gw~pg 140 (149)
T d1o22a_ 115 VKKKNRNELVEEFMKYFFESK-GWNPG 140 (149)
T ss_dssp STTCCHHHHHHHHHHHHHHHH-TCCGG
T ss_pred hhhccHHHHHHHHHHHHHhcc-CCCCC
Confidence 356665556799999999998 57653
No 17
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=24.28 E-value=19 Score=23.94 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=14.2
Q ss_pred ccceeeeecCCcEEEE
Q psy843 9 LTHKIAITADGTTVVC 24 (109)
Q Consensus 9 l~~~iavTsDG~tIVc 24 (109)
.+..|||++||+.+||
T Consensus 24 ~P~gvavd~dg~i~Va 39 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVA 39 (279)
T ss_dssp CEEEEEECTTCCEEEE
T ss_pred CccEEEEcCCCCEEEE
Confidence 4788999999999998
No 18
>d1m8aa_ d.9.1.1 (A:) Macrophage inflammatory protein, MIP {Human (Homo sapiens), ccl20/mip-3a [TaxId: 9606]}
Probab=24.02 E-value=26 Score=19.65 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=12.4
Q ss_pred ceeeeecCCcEEEEecCCC
Q psy843 11 HKIAITADGTTVVCWHPEQ 29 (109)
Q Consensus 11 ~~iavTsDG~tIVcwHP~~ 29 (109)
.=|..|.+|+ -||-+|+.
T Consensus 32 aVIf~tk~g~-~iC~dP~~ 49 (61)
T d1m8aa_ 32 AIIFHTKKKL-SVCANPKQ 49 (61)
T ss_dssp EEEEEETTCC-EEEECTTS
T ss_pred EEEEEECCCC-EEeCCCCh
Confidence 3356667774 48999974
No 19
>d2k57a1 b.38.1.6 (A:2-53) Uncharacterized protein PSPPH2109 {Pseudomonas syringae [TaxId: 317]}
Probab=22.68 E-value=23 Score=20.40 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=10.4
Q ss_pred eeeeecCCcEEEE
Q psy843 12 KIAITADGTTVVC 24 (109)
Q Consensus 12 ~iavTsDG~tIVc 24 (109)
.|.-|.||++||.
T Consensus 4 ~v~tt~dGr~i~T 16 (52)
T d2k57a1 4 TVITLNDGREIQA 16 (52)
T ss_dssp EEEEESSSCEEEE
T ss_pred eEEEecCCcEEEc
Confidence 3567899999995
No 20
>d2jn0a1 b.38.1.6 (A:4-53) Hypothetical lipoprotein YgdR {Escherichia coli [TaxId: 562]}
Probab=21.89 E-value=21 Score=20.51 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=9.6
Q ss_pred eeeecCCcEEEE
Q psy843 13 IAITADGTTVVC 24 (109)
Q Consensus 13 iavTsDG~tIVc 24 (109)
|.=|.||+|||.
T Consensus 3 vm~t~dG~~I~T 14 (50)
T d2jn0a1 3 VMATKDGRMILT 14 (50)
T ss_dssp EEEETTSCEEEB
T ss_pred eEEcCCCCEEEe
Confidence 445889999994
Done!