RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy843
         (109 letters)



>d1gv9a_ b.29.1.13 (A:) Carbohydrate-recognition domain of
          P58/ERGIC-53 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 228

 Score = 23.9 bits (51), Expect = 4.7
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 27 PEQPFPYEHSLPLPVTEQ 44
          P + F Y++S   P   Q
Sbjct: 1  PHRRFEYKYSFKGPHLVQ 18


>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 98

 Score = 22.6 bits (48), Expect = 8.7
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 18 DGTTVVCWHPEQPFPYEHSL 37
          DG+    + P  P  Y+ ++
Sbjct: 56 DGSCSAEYIPFAPGDYDVNI 75


>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate
           phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 135

 Score = 23.2 bits (49), Expect = 8.9
 Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 2/27 (7%)

Query: 83  KHRWFPVRKMRQKKRYFKPLIPDREYL 109
           K  WF +    +  +Y KP+     Y 
Sbjct: 109 KREWFKIEDAIKVLQYHKPVQ--ASYF 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 424,487
Number of extensions: 17247
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 18
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)