BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8430
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW ++ + L+T L HS+ V
Sbjct: 122 SNLIVSGSFDESVRIWDV----------------------KTGMCLKT----LPAHSDPV 155
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 81 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 114
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSD 153
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TG C+ HS V++V F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 196
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 248
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNMVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ +W++
Sbjct: 289 ACHPTENIIASAALENDKTIKLWKS 313
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW ++ + L+T L HS+ V
Sbjct: 122 SNLIVSGSFDESVRIWDV----------------------KTGMCLKT----LPAHSDPV 155
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 81 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 114
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSD 153
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TG C+ HS V++V F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 196
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 248
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNMVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ +W++
Sbjct: 289 ACHPTENIIASAALENDKTIKLWKS 313
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW V +C +K L HS+ V
Sbjct: 141 SNLIVSGSFDESVRIWD-VKTGKC-------------------------LKTLPAHSDPV 174
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 100 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 133
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 172
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 215
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 267
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 249 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 307
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ +W++
Sbjct: 308 ACHPTENIIASAALENDKTIKLWKS 332
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 83 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 142
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW V +C +K L HS+ V
Sbjct: 143 SNLIVSGSFDESVRIWD-VKTGKC-------------------------LKTLPAHSDPV 176
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 177 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 218
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 102 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 135
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 174
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 183
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 184 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 217
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 218 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 269
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 251 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 309
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ +W++
Sbjct: 310 ACHPTENIIASAALENDKTIKLWKS 334
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW V +C +K L HS+ V
Sbjct: 119 SNLIVSGSFDESVRIWD-VKTGKC-------------------------LKTLPAHSDPV 152
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 78 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 111
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 150
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 193
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 245
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 285
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ +W++
Sbjct: 286 ACHPTENIIASAALENDKTIKLWKS 310
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 76 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 135
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW V +C +K L HS+ V
Sbjct: 136 SNLIVSGSFDESVRIWD-VKTGKC-------------------------LKTLPAHSDPV 169
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 170 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 211
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 95 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 128
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 129 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 167
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 210
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 262
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 244 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 302
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ +W++
Sbjct: 303 ACHPTENIIASAALENDKTIKLWKS 327
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 55 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 114
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW V +C +K L HS+ V
Sbjct: 115 SNLIVSGSFDESVRIWD-VKTGKC-------------------------LKTLPAHSDPV 148
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 149 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 190
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 74 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 107
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 108 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 146
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 155
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 189
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 241
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 223 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 281
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ +W++
Sbjct: 282 ACHPTENIIASAALENDKTIKLWKS 306
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW V +C +K L HS+ V
Sbjct: 119 SNLIVSGSFDESVRIWD-VKTGKC-------------------------LKTLPAHSDPV 152
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 78 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 111
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 150
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 193
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 245
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 285
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ +W++
Sbjct: 286 ACHPTENIIASAALENDKTIKLWKS 310
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW V +C +K L HS+ V
Sbjct: 125 SNLIVSGSFDESVRIWD-VKTGKC-------------------------LKTLPAHSDPV 158
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 84 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 117
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 199
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 251
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ +W++
Sbjct: 292 ACHPTENIIASAALENDKTIKLWKS 316
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 60 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 119
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW V +C +K L HS+ V
Sbjct: 120 SNLIVSGSFDESVRIWD-VKTGKC-------------------------LKTLPAHSDPV 153
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 154 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 195
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 79 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 112
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 151
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 160
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 194
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 246
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 228 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 286
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ +W++
Sbjct: 287 ACHPTENIIASAALENDKTIKLWKS 311
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW V +C +K L HS+ V
Sbjct: 125 SNLIVSGSFDESVRIWD-VKTGKC-------------------------LKTLPAHSDPV 158
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 84 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 117
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 199
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 251
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ +W++
Sbjct: 292 ACHPTENIIASAALENDKTIKLWKS 316
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW V +C +K L HS+ V
Sbjct: 125 SNLIVSGSFDESVRIWD-VKTGKC-------------------------LKTLPAHSDPV 158
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 159 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 84 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 117
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 156
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 199
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 251
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ +W++
Sbjct: 292 ACHPTENIIASAALENDKTIKLWKS 316
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW V +C +K L HS+ V
Sbjct: 122 SNLIVSGSFDESVRIWD-VKTGKC-------------------------LKTLPAHSDPV 155
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 81 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 114
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 196
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 248
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ ++++
Sbjct: 289 ACHPTENIIASAALENDKTIKLFKS 313
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 64 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 123
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW V +C +K L HS+ V
Sbjct: 124 SNLIVSGSFDESVRIWD-VKTGKC-------------------------LKTLPAHSDPV 157
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 158 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 199
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 83 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 116
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 155
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 198
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 250
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 232 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 290
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ +W++
Sbjct: 291 ACHPTENIIASAALENDKTIKLWKS 315
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW V +C +K L HS+ V
Sbjct: 122 SNLIVSGSFDESVRIWD-VKTGKC-------------------------LKTLPAHSDPV 155
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 81 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 114
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 196
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 248
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ ++++
Sbjct: 289 ACHPTENIIASAALENDKTIKLYKS 313
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 58 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 117
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW V +C +K L HS+ V
Sbjct: 118 SNLIVSGSFDESVRIWD-VKTGKC-------------------------LKTLPAHSDPV 151
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 152 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 193
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 77 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 110
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 111 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 149
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 192
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 244
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 226 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 284
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ +W++
Sbjct: 285 ACHPTENIIASAALENDKTIKLWKS 309
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 26/162 (16%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
+L++S S D+SV IW + +K L HS+ V
Sbjct: 122 SNLIVSGSFDESVRIWD--------------------------VKTGKCLKTLPAHSDPV 155
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
A + DG ++++S+D + ++D +G L++L D P
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ +GH V V P L ++SAD+ +++W GK SGH ++ V + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
+L++SAS DK++ IW V + +C +K L GHSN V
Sbjct: 81 NLLVSASDDKTLKIWD-VSSGKC-------------------------LKTLKGHSNYVF 114
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
++ +++ S+D ++DV+TG L++L H +
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD 153
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ L++S+S D IW +C +K L+ N
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASG-QC-------------------------LKTLIDDDNP 196
Query: 274 VIA-ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
++ + +G+ ++ A+ D L+D G L++ TGH E + C+ + +S
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--CIFANFS 248
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 154 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 210 RFLPNKDLVLSAS--GDKSVHIWQA 232
P ++++ SA+ DK++ +W++
Sbjct: 289 ACHPTENIIASAALENDKTIKLWKS 313
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 96/209 (45%), Gaps = 41/209 (19%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ +GH VW VA P + SAS D+TV+LW+ + G+ + +GHS SV V F P
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 231
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ + SAS DK+V +W + + L+T L GHS+
Sbjct: 232 DGQTIASASDDKTVKLW-----------------------NRNGQLLQT----LTGHSSS 264
Query: 274 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE-------EPHILCVSSYYS 326
V + DG+ + +AS D+ L++ G +LQ+LTGH P ++S
Sbjct: 265 VNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 323
Query: 327 KVSCDLFQR-IQHLDCGTSENPIHSVCVF 354
+ L+ R QHL T HS V+
Sbjct: 324 DKTVKLWNRNGQHLQTLTG----HSSSVW 348
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 29/159 (18%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ +GH VW VA P + SAS D+TV+LW+ + G+ + +GHS SV V F P
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 108
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ + SAS DK+V +W + + L+T L GHS+
Sbjct: 109 DGQTIASASDDKTVKLW-----------------------NRNGQLLQT----LTGHSSS 141
Query: 274 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
V + DG+ + +AS D+ L++ G +LQ+LTGH
Sbjct: 142 VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 179
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 29/159 (18%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ +GH VW VA P + SAS D+TV+LW+ + G+ + +GHS SV V F P
Sbjct: 419 LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 477
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ + SAS DK+V +W + + L+T L GHS+
Sbjct: 478 DGQTIASASDDKTVKLW-----------------------NRNGQLLQT----LTGHSSS 510
Query: 274 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
V + DG+ + +AS D+ L++ G +LQ+LTGH
Sbjct: 511 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 548
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 22/176 (12%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ +GH VW VA P + SAS D+TV+LW+ + G+ + +GHS SV V F P
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 395
Query: 214 NKDLVLSASGDKSVHIW----QAVINWECXXXXXXXXXXESKEPDESSITLRTP------ 263
+ + SAS DK+V +W Q + + + PD+ +I +
Sbjct: 396 DGQTIASASDDKTVKLWNRNGQLL---QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL 452
Query: 264 -------VKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
++ L GHS+ V + DG+ + +AS D+ L++ G +LQ+LTGH
Sbjct: 453 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 507
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 29/159 (18%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ +GH VW VA P + SAS D+TV+LW+ + G+ + +GHS SV V F P
Sbjct: 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 190
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ + SAS DK+V +W + + L+T L GHS+
Sbjct: 191 DGQTIASASDDKTVKLW-----------------------NRNGQLLQT----LTGHSSS 223
Query: 274 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
V + DG+ + +AS D+ L++ G +LQ+LTGH
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 261
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 29/159 (18%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ +GH VW VA P + SAS D+TV+LW+ + G+ + +GHS SV V F P
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSP 354
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ + SAS DK+V +W + + L+T L GHS+
Sbjct: 355 DGQTIASASDDKTVKLW-----------------------NRNGQLLQT----LTGHSSS 387
Query: 274 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
V + DG+ + +AS D+ L++ G +LQ+LTGH
Sbjct: 388 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 425
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 29/153 (18%)
Query: 160 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 219
H V VA P + SAS D+TV+LW+ + G+ + +GHS SV V F P+ +
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 220 SASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVIAADW 279
SAS DK+V +W + + L+T L GHS+ V +
Sbjct: 74 SASDDKTVKLW-----------------------NRNGQLLQT----LTGHSSSVRGVAF 106
Query: 280 LSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
DG+ + +AS D+ L++ G +LQ+LTGH
Sbjct: 107 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 138
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ +GH V VA P + SAS D+TV+LW+ + G+ + +GHS SV V F P
Sbjct: 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 559
Query: 214 NKDLVLSASGDKSVHIW 230
+ + SAS DK+V +W
Sbjct: 560 DGQTIASASSDKTVKLW 576
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 264 VKE---LLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
VKE L HS+ V + DG+ + +AS D+ L++ G +LQ+LTGH
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 56
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 36/195 (18%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
R+ GH D V D++ +L S SAD T++LW Q +C+ GH +V+SV +PN
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSI---------TLRTPV- 264
D ++SAS DK++ +W+ + P++ T+R V
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263
Query: 265 ------KELLGHSNVVIAADWLSD--------------------GEQVITASWDRVANLF 298
EL H +VV W + G +++ S D+ ++
Sbjct: 264 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323
Query: 299 DVETGTILQSLTGHD 313
DV TG L +L GHD
Sbjct: 324 DVSTGMCLMTLVGHD 338
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 26/159 (16%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ SGHR V V P V+ SAS D T+++W +TG GH+ SV + F +
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 216 DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
L+ S S D ++ +W +EC ++ + GH + V
Sbjct: 163 KLLASCSADMTIKLWD-FQGFEC-------------------------IRTMHGHDHNVS 196
Query: 276 AADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
+ + +G+ +++AS D+ +++V+TG +++ TGH E
Sbjct: 197 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE 235
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 69/240 (28%)
Query: 102 MECVTNMNKNFNKQKVLASNP------SAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKIR 155
EC+ M+ + + ++ P SA + KT +VQT Y ++
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-------------YCVK 228
Query: 156 SFSGHRDGVWDVAVRPGQ--PVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+F+GHR+ W VRP Q ++ S S D+TVR+W T +C + H V + + P
Sbjct: 229 TFTGHRE--WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286
Query: 214 NKD--------------------LVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEP 253
+LS S DK++ +W
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV--------------------- 325
Query: 254 DESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHD 313
+ + L T L+GH N V + S G+ +++ + D+ ++D + +++L H+
Sbjct: 326 -STGMCLMT----LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 380
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+ + GH + V V G + S + D+T+R+W + +C+ + H V S+ F
Sbjct: 331 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 390
Query: 214 NKDLVLSASGDKSVHIWQ 231
V++ S D++V +W+
Sbjct: 391 TAPYVVTGSVDQTVKVWE 408
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 30/174 (17%)
Query: 157 FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKD 216
SGH GVW + G +L S S DRTVR+W + G C + GH+ +V + + K+
Sbjct: 158 LSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 217 L--VLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESS-----ITLRTP------ 263
+ +++ S D ++H+W+ ES PD + TP
Sbjct: 217 IKYIVTGSRDNTLHVWKL--------------PKESSVPDHGEEHDYPLVFHTPEENPYF 262
Query: 264 VKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPH 317
V L GH V G V++ S+D ++DV L L+GH + +
Sbjct: 263 VGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIY 314
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 157 FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKD 216
SGH D ++ + SAS D T+R+W + G+ GH+ V +R L +K
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLR-LSDKF 364
Query: 217 LVLSASGDKSVHIWQA 232
LV SA+ D S+ W A
Sbjct: 365 LV-SAAADGSIRGWDA 379
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+R+ SGH + ++ S S D T+ +W KC+ SGH+ + S +
Sbjct: 273 VRTVSGHGN------------IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDH 320
Query: 214 NKDLVLSASGDKSVHIW 230
+ +SAS D ++ IW
Sbjct: 321 ERKRCISASXDTTIRIW 337
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 266 ELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYY 325
+L GH V A + + G +++ S DR ++D++ G GH+ L + Y
Sbjct: 157 QLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY- 214
Query: 326 SKVSCDLFQRIQHLDCGTSENPIH 349
+ I+++ G+ +N +H
Sbjct: 215 --------KNIKYIVTGSRDNTLH 230
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 23/158 (14%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
R GH V DVA+ SAS D ++RLW+ Q G+C ++ GH+ V SV F P+
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVV 274
++S D ++ +W + EC + S +L PV
Sbjct: 121 NRQIVSGGRDNALRVWN--VKGECMHTLSRGAHTDWVSCVRFSPSLDAPV---------- 168
Query: 275 IAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
+++ WD + ++D+ TG ++ L GH
Sbjct: 169 -----------IVSGGWDNLVKVWDLATGRLVTDLKGH 195
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 151 CYKIRSFSGHRDGVWDVAVRPG--QPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNS 208
C S H D V V P PV+ S D V++W TG+ V GH+ V S
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTS 201
Query: 209 VRFLPNKDLVLSASGDKSVHIW 230
V P+ L S+ D +W
Sbjct: 202 VTVSPDGSLCASSDKDGVARLW 223
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 24/123 (19%)
Query: 198 QYSGHSGSVNSVRFLPNKDL---VLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPD 254
Q +GH G V S+ + V+S S DK++ W PD
Sbjct: 8 QLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSW-------------------GPNPD 48
Query: 255 E--SSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
S + P + L GHS V ++G ++ASWD L++++ G GH
Sbjct: 49 RHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGH 108
Query: 313 DEE 315
++
Sbjct: 109 TKD 111
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+ GH + V V V P + S+ D RLW G+ + + + +N + F P
Sbjct: 189 VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA-GAPINQICFSP 247
Query: 214 NKDLVLSASGDKSVHI 229
N+ + +A+ +K + I
Sbjct: 248 NRYWMCAAT-EKGIRI 262
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 30/174 (17%)
Query: 157 FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKD 216
SGH GVW + G +L S S DRTVR+W + G C + GH+ +V + + K+
Sbjct: 158 LSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 217 L--VLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESS-----ITLRTP------ 263
+ +++ S D ++H+W+ ES PD + TP
Sbjct: 217 IKYIVTGSRDNTLHVWKL--------------PKESSVPDHGEEHDYPLVFHTPEENPYF 262
Query: 264 VKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPH 317
V L GH V G V++ S+D ++DV L L+GH + +
Sbjct: 263 VGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY 314
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 149 LSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNS 208
+ C I SGH D ++ + SAS D T+R+W + G+ + GH+ V
Sbjct: 300 MKCLYI--LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL 357
Query: 209 VRFLPNKDLVLSASGDKSVHIWQA 232
+R L +K LV SA+ D S+ W A
Sbjct: 358 LR-LSDKFLV-SAAADGSIRGWDA 379
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+R+ SGH + ++ S S D T+ +W KC+ SGH+ + S +
Sbjct: 273 VRTVSGHGN------------IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 320
Query: 214 NKDLVLSASGDKSVHIW 230
+ +SAS D ++ IW
Sbjct: 321 ERKRCISASMDTTIRIW 337
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 266 ELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYY 325
+L GH V A + + G +++ S DR ++D++ G GH+ L + Y
Sbjct: 157 QLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY- 214
Query: 326 SKVSCDLFQRIQHLDCGTSENPIH 349
+ I+++ G+ +N +H
Sbjct: 215 --------KNIKYIVTGSRDNTLH 230
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 26/148 (17%)
Query: 167 VAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKS 226
V P L + + DR +R+W + K V+ GH + S+ + P+ D ++S SGD++
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 227 VHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQV 286
V IW + S+TL V A DG+ +
Sbjct: 189 VRIWDL-------------------RTGQCSLTLSI-------EDGVTTVAVSPGDGKYI 222
Query: 287 ITASWDRVANLFDVETGTILQSLTGHDE 314
S DR ++D ETG +++ L +E
Sbjct: 223 AAGSLDRAVRVWDSETGFLVERLDSENE 250
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 21/146 (14%)
Query: 157 FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKD 216
GH ++ + P L S S DRTVR+W +TG+C L S G V +V P
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDG 219
Query: 217 LVLSA-SGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVI 275
++A S D++V +W + + E + + S T GH + V
Sbjct: 220 KYIAAGSLDRAVRVWDSETGF----------LVERLDSENESGT---------GHKDSVY 260
Query: 276 AADWLSDGEQVITASWDRVANLFDVE 301
+ + DG+ V++ S DR L++++
Sbjct: 261 SVVFTRDGQSVVSGSLDRSVKLWNLQ 286
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 14/88 (15%)
Query: 156 SFSGHRDGVWDVA-VRPGQPVLGSASADRTVRLWSTQ------------TGKCVLQYSGH 202
S +GH+D V+ V R GQ V+ S S DR+V+LW+ Q +G C + Y GH
Sbjct: 251 SGTGHKDSVYSVVFTRDGQSVV-SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 309
Query: 203 SGSVNSVRFLPNKDLVLSASGDKSVHIW 230
V SV N + +LS S D+ V W
Sbjct: 310 KDFVLSVATTQNDEYILSGSKDRGVLFW 337
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFL--- 212
++ GH+D V VA + S S DR V W ++G +L GH SV SV
Sbjct: 305 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 364
Query: 213 ---PNKDLVLSASGDKSVHIWQ 231
P ++ + SGD IW+
Sbjct: 365 SLGPEYNVFATGSGDCKARIWK 386
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 26/108 (24%)
Query: 206 VNSVRFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVK 265
+ SV F P+ + + + D+ + IW I R V
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWD--------------------------IENRKIVM 159
Query: 266 ELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHD 313
L GH + + D+ G+++++ S DR ++D+ TG +L+ D
Sbjct: 160 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED 207
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 282 DGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHIL 319
DG+ + T + DR+ ++D+E I+ L GH+++ + L
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 171
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 23/220 (10%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
+ GH D V G ++ S S D T+++WS TGKC+ GH+G V S + N
Sbjct: 112 KVLKGHDDHVITCLQFCGNRIV-SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 170
Query: 215 KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXX-------ESKEPDES-SITLRTPVKE 266
+++S S D+++ +W A EC E + S TLR E
Sbjct: 171 --IIISGSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 227
Query: 267 -------LLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHIL 319
L+GH V + DG +V++ ++D + ++D ET T L +L GH + L
Sbjct: 228 TGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 285
Query: 320 CVSSYYSKVSCDLFQRIQHLDCGTSENPIHSVCVFQDIQS 359
+ VS L I+ D T N IH++ Q + S
Sbjct: 286 QFDGIHV-VSGSLDTSIRVWDVETG-NCIHTLTGHQSLTS 323
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 29/156 (18%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+ + GH + V+ + V S S D ++R+W +TG C+ +GH + +
Sbjct: 272 LHTLQGHTNRVYSLQFDGIHVV--SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 329
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
N +++S + D +V IW + + TL+ P K H +
Sbjct: 330 N--ILVSGNADSTVKIWDI-------------------KTGQCLQTLQGPNK----HQSA 364
Query: 274 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSL 309
V + + VIT+S D L+D++TG +++L
Sbjct: 365 VTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNL 398
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 15/139 (10%)
Query: 175 VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVI 234
+L + S D ++LW +C GH+ SVN RF P+ +L+ S S D ++ +W
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Query: 235 NWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRV 294
E S++P E +V W +DG+++I A+ ++V
Sbjct: 782 ANERKSINVKRFFLSSEDPPEDV-------------EVIVKCCSWSADGDKIIVAAKNKV 828
Query: 295 ANLFDVETGTILQSL-TGH 312
LFD+ T +L + TGH
Sbjct: 829 L-LFDIHTSGLLAEIHTGH 846
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 26/133 (19%)
Query: 176 LGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVIN 235
L S S D TV++W+ TG+ ++ H G+V S + S S DK+ IW
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW----- 1119
Query: 236 WECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVA 295
S L +P+ EL GH+ V + + DG + T +
Sbjct: 1120 ---------------------SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1158
Query: 296 NLFDVETGTILQS 308
+++V G +L S
Sbjct: 1159 RIWNVSDGQLLHS 1171
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
R F+ H+ V A+ S SAD+T ++WS + + GH+G V F +
Sbjct: 1086 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF--S 1143
Query: 215 KDLVLSASGDKS--VHIW 230
D +L A+GD + + IW
Sbjct: 1144 LDGILLATGDDNGEIRIW 1161
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 160 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 219
H D V+ + S AD+T++++ +TG+ +L H V F + +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 220 SASGDKSVHIW 230
+ S DK V IW
Sbjct: 681 TCSADKKVKIW 691
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 158 SGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDL 217
+GH + P + A + V LW+ + V GH V+ V F P+
Sbjct: 844 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 903
Query: 218 VLSASGDKSVHIWQ 231
L+AS D+++ +W+
Sbjct: 904 FLTASDDQTIRVWE 917
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVS-----SY 324
H++ V A + DG+++ + D+ +F ETG L + H++E +LC + SY
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDE--VLCCAFSSDDSY 678
Query: 325 YSKVSCD 331
+ S D
Sbjct: 679 IATCSAD 685
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 15/139 (10%)
Query: 175 VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVI 234
+L + S D ++LW +C GH+ SVN RF P+ +L+ S S D ++ +W
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Query: 235 NWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRV 294
E S++P E +V W +DG+++I A+ ++V
Sbjct: 775 ANERKSINVKRFFLSSEDPPEDV-------------EVIVKCCSWSADGDKIIVAAKNKV 821
Query: 295 ANLFDVETGTILQSL-TGH 312
LFD+ T +L + TGH
Sbjct: 822 L-LFDIHTSGLLAEIHTGH 839
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 26/133 (19%)
Query: 176 LGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVIN 235
L S S D TV++W+ TG+ ++ H G+V S + S S DK+ IW
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW----- 1112
Query: 236 WECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVA 295
S L +P+ EL GH+ V + + DG + T +
Sbjct: 1113 ---------------------SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1151
Query: 296 NLFDVETGTILQS 308
+++V G +L S
Sbjct: 1152 RIWNVSDGQLLHS 1164
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
R F+ H+ V A+ S SAD+T ++WS + + GH+G V F +
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF--S 1136
Query: 215 KDLVLSASGDKS--VHIW 230
D +L A+GD + + IW
Sbjct: 1137 LDGILLATGDDNGEIRIW 1154
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 160 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 219
H D V+ + S AD+T++++ +TG+ +L H V F + +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 220 SASGDKSVHIW 230
+ S DK V IW
Sbjct: 674 TCSADKKVKIW 684
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 158 SGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDL 217
+GH + P + A + V LW+ + V GH V+ V F P+
Sbjct: 837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 896
Query: 218 VLSASGDKSVHIWQ 231
L+AS D+++ +W+
Sbjct: 897 FLTASDDQTIRVWE 910
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVS-----SY 324
H++ V A + DG+++ + D+ +F ETG L + H++E +LC + SY
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDE--VLCCAFSSDDSY 671
Query: 325 YSKVSCD 331
+ S D
Sbjct: 672 IATCSAD 678
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 15/139 (10%)
Query: 175 VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVI 234
+L + S+D ++LW +C GH+ SVN RF P+ L+ S S D ++ +W A
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDAT- 779
Query: 235 NWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRV 294
+S + + L P +++ +V W +DG +++ A+ +++
Sbjct: 780 ---------SANERKSINVKQFFLNLEDPQEDM---EVIVKCCSWSADGARIMVAAKNKI 827
Query: 295 ANLFDVETGTILQSL-TGH 312
LFD+ T +L + TGH
Sbjct: 828 F-LFDIHTSGLLGEIHTGH 845
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 28/154 (18%)
Query: 160 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 219
H+ VW + + L S+S D +++W+ Q KC+ GH +V R L N L L
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRL-L 1065
Query: 220 SASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVIAADW 279
S S D +V +W + +KE K+ + H V++ D
Sbjct: 1066 SWSFDGTVKVWNIITG--------------NKE------------KDFVCHQGTVLSCDI 1099
Query: 280 LSDGEQVITASWDRVANLFDVETGTILQSLTGHD 313
D + + S D+ A ++ + L L GH+
Sbjct: 1100 SHDATKFSSTSADKTAKIWSFDLLLPLHELRGHN 1133
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 160 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 219
H D V+ + S AD+T++++ +TG+ +L+ H V F + +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 220 SASGDKSVHIWQAV 233
+ S DK V IW ++
Sbjct: 680 TCSVDKKVKIWNSM 693
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 59/157 (37%), Gaps = 27/157 (17%)
Query: 159 GHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLV 218
GH++ V D + +L S S D TV++W+ TG + H G+V S +
Sbjct: 1048 GHQETVKDFRLLKNSRLL-SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKF 1106
Query: 219 LSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVIAAD 278
S S DK+ IW S L P+ EL GH+ V +
Sbjct: 1107 SSTSADKTAKIW--------------------------SFDLLLPLHELRGHNGCVRCSA 1140
Query: 279 WLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEE 315
+ D + T + +++V G +L EE
Sbjct: 1141 FSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEE 1177
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 158 SGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDL 217
+GH + P + A + V LW+T + V GH V+ V F P+
Sbjct: 843 TGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSS 902
Query: 218 VLSASGDKSVHIWQ 231
L++S D+++ +W+
Sbjct: 903 FLTSSDDQTIRLWE 916
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 153 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFL 212
K + F H+ V + S SAD+T ++WS + + GH+G V F
Sbjct: 1083 KEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFS 1142
Query: 213 PNKDLVLSASGDKSVHIW 230
+ L+ + + + IW
Sbjct: 1143 VDSTLLATGDDNGEIRIW 1160
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVS 322
H++ V A + DG+++ + D+ +F ETG L + H++E +LC +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDE--VLCCA 670
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 107 NMNKNF--NKQKVLASNPSAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKIRSFSGHRDGV 164
N K+F ++ VL+ + S K ++ +T+KI S LL +++R GH V
Sbjct: 1082 NKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSF--DLLLPLHELR---GHNGCV 1136
Query: 165 WDVAVRPGQPVLGSASADRTVRLWSTQTGKCV-----LQYSG---HSGSVNSVRFLPNKD 216
A +L + + +R+W+ G+ + L G H G V + F P+
Sbjct: 1137 RCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGK 1196
Query: 217 LVLSASG 223
+++SA G
Sbjct: 1197 MLISAGG 1203
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 100 NDMECVTNMNKNFNKQKVLASNPSAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKIRS-FS 158
+D ECVT + + N+ K +A PS L T ++ K V ++ Y+ S +
Sbjct: 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSR-----DKSVWVWEVDEEDEYECVSVLN 147
Query: 159 GHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGK--CVLQYSGHSGSVNSVRFLPNKD 216
H V V P Q +L SAS D TV+L+ + C GH +V S+ F P+
Sbjct: 148 SHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 207
Query: 217 LVLSASGDKSVHIWQAVI 234
+ S S D++V IW+ +
Sbjct: 208 RLASCSDDRTVRIWRQYL 225
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 118 LASNPSAQKLKTTN---KLKVQTSKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQP 174
LA NP+ L + ++++ ++ S S+LS GH+ V VA P
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-------EGHQRTVRKVAWSPCGN 74
Query: 175 VLGSASADRTVRLWSTQTG--KCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQ 231
L SAS D T +W +CV GH V SV + P+ +L+ + S DKSV +W+
Sbjct: 75 YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 21/148 (14%)
Query: 100 NDMECVTNMNKNFNKQKVLASNPSAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKIRSFSG 159
++ ECV+ +N + K + +PS + L + + T K+ + + C + G
Sbjct: 138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASY--DDTVKLYREEEDDWVCC---ATLEG 192
Query: 160 HRDGVWDVAVRPGQPVLGSASADRTVRLW---------------STQTGKCVLQYSG-HS 203
H VW +A P L S S DRTVR+W S + KC+ SG HS
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS 252
Query: 204 GSVNSVRFLPNKDLVLSASGDKSVHIWQ 231
++ + + + +A GD ++ ++Q
Sbjct: 253 RTIYDIAWCQLTGALATACGDDAIRVFQ 280
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 61/162 (37%), Gaps = 39/162 (24%)
Query: 164 VWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQ---YSGHSGSVNSVRFLPNKDLVLS 220
W +A P +L S DR +R+W T+ + + GH +V V + P + + S
Sbjct: 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLAS 78
Query: 221 ASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVIAADWL 280
AS D + IW+ K D+ V L GH N V + W
Sbjct: 79 ASFDATTCIWK-------------------KNQDDFEC-----VTTLEGHENEVKSVAWA 114
Query: 281 SDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVS 322
G + T S D+ +++V DEE CVS
Sbjct: 115 PSGNLLATCSRDKSVWVWEV------------DEEDEYECVS 144
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 41/220 (18%)
Query: 128 KTTNKLKVQTSKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRL 187
K + L+ T KI + + L C +I +GH V + ++ + V+ + S+D TVR+
Sbjct: 145 KIVSGLRDNTIKI---WDKNTLECKRI--LTGHTGSV--LCLQYDERVIITGSSDSTVRV 197
Query: 188 WSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXX 247
W TG+ + H +V +RF N ++++ S D+S+ +W
Sbjct: 198 WDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMA-------------- 241
Query: 248 XESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQ 307
+ ITLR + L+GH V D+ D + +++AS DR +++ T ++
Sbjct: 242 ------SPTDITLR---RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR 290
Query: 308 SLTGHDEEPHILCVSSYYSKV----SCDLFQRIQHLDCGT 343
+L GH I C+ Y ++ S D R+ ++CG
Sbjct: 291 TLNGHKRG--IACL-QYRDRLVVSGSSDNTIRLWDIECGA 327
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 150 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+C +R+ +GH+ G+ + R ++ S S+D T+RLW + G C+ GH V +
Sbjct: 285 TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 210 RFLPNKDLVLSASGDKSVHIWQAV 233
RF NK +V S + D + +W V
Sbjct: 343 RF-DNKRIV-SGAYDGKIKVWDLV 364
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 75/181 (41%), Gaps = 34/181 (18%)
Query: 148 LLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYS----GHS 203
L + R F GH V VA + SAS DRT++LW+T G+C S GH
Sbjct: 459 LAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHR 517
Query: 204 GSVNSVRFLPN--KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLR 261
V+ VRF PN + ++SAS DK+V +W S+ LR
Sbjct: 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNL-----------------------SNCKLR 554
Query: 262 TPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCV 321
+ L GH+ V DG + D V L+D+ G L SL + H LC
Sbjct: 555 S---TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCF 610
Query: 322 S 322
S
Sbjct: 611 S 611
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 27/171 (15%)
Query: 155 RSFSGHRDGVWDVAVRP-GQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
R +GH V DV + GQ L S S D +RLW G ++ GH+ V SV F
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFAL-SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL 482
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
+ ++SAS D+++ +W + EC E E GH +
Sbjct: 483 DNRQIVSASRDRTIKLWNTLG--EC-----KYTISEGGE----------------GHRDW 519
Query: 274 VIAADWLSDGEQ--VITASWDRVANLFDVETGTILQSLTGHDEEPHILCVS 322
V + + Q +++ASWD+ ++++ + +L GH + VS
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS 570
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 21/102 (20%)
Query: 214 NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNV 273
N D+++SAS DKS+ +W+ +K+ + R L GHS+
Sbjct: 394 NADIIVSASRDKSIILWKL-----------------TKDDKAYGVAQR----RLTGHSHF 432
Query: 274 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEE 315
V SDG+ ++ SWD L+D+ G + GH ++
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD 474
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 149 LSCYKIRS-FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVN 207
LS K+RS +GH V VAV P + S D V LW GK + +S ++
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIH 606
Query: 208 SVRFLPNKDLVLSASGDKSVHIW 230
++ F PN+ L A+ + + IW
Sbjct: 607 ALCFSPNR-YWLCAATEHGIKIW 628
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 31/130 (23%)
Query: 175 VLGSASADRTVRLWS-----TQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHI 229
++ SAS D+++ LW G + +GHS V V + LS S D + +
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 230 WQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITA 289
W + + +GH+ V++ + D Q+++A
Sbjct: 457 WD--------------------------LAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 290 SWDRVANLFD 299
S DR L++
Sbjct: 491 SRDRTIKLWN 500
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+RSF GH V D + SAS D+T+RLW TG+ ++ GH V SV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 214 NKDLVLSASGDKSVHIW 230
+++S S DK++ +W
Sbjct: 118 KASMIISGSRDKTIKVW 134
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 22/113 (19%)
Query: 201 GHSGSVNSVRFLPNK-DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSIT 259
GH+G V S+ + +L+LSAS DK++ I+W+ D+
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTL------ISWKLTG-------------DDQKFG 55
Query: 260 LRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
+ PV+ GHS++V +DG ++ASWD+ L+DV TG Q GH
Sbjct: 56 V--PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 33/165 (20%)
Query: 156 SFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLWST-----QTGKCVLQYSGHSGSVNSV 209
+ GH V +A GQP +L SAS D+T+ W + G V + GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 210 RFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLG 269
+ LSAS DK++ +W + + +G
Sbjct: 72 TLTADGAYALSASWDKTLRLWD--------------------------VATGETYQRFVG 105
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
H + V++ D +I+ S D+ ++ ++ G L +L GH++
Sbjct: 106 HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND 149
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+RSF GH V D + SAS D+T+RLW TG+ ++ GH V SV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 214 NKDLVLSASGDKSVHIW 230
+++S S DK++ +W
Sbjct: 118 KASMIISGSRDKTIKVW 134
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 22/113 (19%)
Query: 201 GHSGSVNSVRFLPNK-DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSIT 259
GH+G V S+ + +L+LSAS DK++ I+W+ D+
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTL------ISWKLTG-------------DDQKFG 55
Query: 260 LRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
+ PV+ GHS++V +DG ++ASWD+ L+DV TG Q GH
Sbjct: 56 V--PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 33/165 (20%)
Query: 156 SFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLWST-----QTGKCVLQYSGHSGSVNSV 209
+ GH V +A GQP +L SAS D+T+ W + G V + GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 210 RFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLG 269
+ LSAS DK++ +W + + +G
Sbjct: 72 TLTADGAYALSASWDKTLRLWD--------------------------VATGETYQRFVG 105
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
H + V++ D +I+ S D+ ++ ++ G L +L GH++
Sbjct: 106 HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND 149
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+RSF GH V D + SAS D+T+RLW TG+ ++ GH V SV
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 111
Query: 214 NKDLVLSASGDKSVHIW 230
+++S S DK++ +W
Sbjct: 112 KASMIISGSRDKTIKVW 128
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 22/116 (18%)
Query: 201 GHSGSVNSVRFLPNK-DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSIT 259
GH+G V S+ + +L+LSAS DK++ I+W+ D+
Sbjct: 9 GHNGWVTSLATSAGQPNLLLSASRDKTL------ISWKLTG-------------DDQKFG 49
Query: 260 LRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEE 315
+ PV+ GHS++V +DG ++ASWD+ L+DV TG Q GH +
Sbjct: 50 V--PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 103
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 33/165 (20%)
Query: 156 SFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLWST-----QTGKCVLQYSGHSGSVNSV 209
+ GH V +A GQP +L SAS D+T+ W + G V + GHS V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 210 RFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLG 269
+ LSAS DK++ +W + + +G
Sbjct: 66 TLTADGAYALSASWDKTLRLWD--------------------------VATGETYQRFVG 99
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
H + V++ D +I+ S D+ ++ ++ G L +L GH++
Sbjct: 100 HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND 143
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+RSF GH V D + SAS D+T+RLW TG+ ++ GH V SV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 214 NKDLVLSASGDKSVHIW 230
+++S S DK++ +W
Sbjct: 118 KASMIISGSRDKTIKVW 134
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 22/113 (19%)
Query: 201 GHSGSVNSVRFLPNK-DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSIT 259
GH+G V S+ + +L+LSAS DK++ I+W+ D+
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTL------ISWKLTG-------------DDQKFG 55
Query: 260 LRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
+ PV+ GHS++V +DG ++ASWD+ L+DV TG Q GH
Sbjct: 56 V--PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 33/165 (20%)
Query: 156 SFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLWST-----QTGKCVLQYSGHSGSVNSV 209
+ GH V +A GQP +L SAS D+T+ W + G V + GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 210 RFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLG 269
+ LSAS DK++ +W + + +G
Sbjct: 72 TLTADGAYALSASWDKTLRLWD--------------------------VATGETYQRFVG 105
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
H + V++ D +I+ S D+ ++ ++ G L +L GH++
Sbjct: 106 HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND 149
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
++ +GH V D+A+ S+S D+T+RLW +TG ++ GH V SV F P+
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 215 KDLVLSASGDKSVHIW 230
+LSA ++ + +W
Sbjct: 130 NRQILSAGAEREIKLW 145
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 19/106 (17%)
Query: 217 LVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVIA 276
+++S S DK+V IW+ +E + P K L GH++ V
Sbjct: 41 VLISGSRDKTVMIWKLY-------------------EEEQNGYFGIPHKALTGHNHFVSD 81
Query: 277 ADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVS 322
+ I++SWD+ L+D+ TGT + GH E + + S
Sbjct: 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVL---QYSGHSGSVNSVRF 211
+ F GH+ V+ VA P + SA A+R ++LW+ G+C + HS V+ VR+
Sbjct: 112 KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRY 170
Query: 212 LP 213
P
Sbjct: 171 SP 172
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 169 VRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVH 228
V+P P S D +++W+T + + H +VN + PN + + DK +
Sbjct: 180 VQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL 238
Query: 229 IW 230
IW
Sbjct: 239 IW 240
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 39/155 (25%)
Query: 159 GHRDGVWDVAVRPGQ------PVLGSASADRTVRLW----STQTGKCVLQY---SGHSGS 205
GH D V + Q PVL S S D+TV +W Q G + + +GH+
Sbjct: 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHF 78
Query: 206 VNSVRFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVK 265
V+ + +S+S DK++ +W + T K
Sbjct: 79 VSDLALSQENCFAISSSWDKTLRLWD--------------------------LRTGTTYK 112
Query: 266 ELLGHSNVVIAADWLSDGEQVITASWDRVANLFDV 300
+GH + V + + D Q+++A +R L+++
Sbjct: 113 RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+RSF GH V D + SAS D+T+RLW TG+ ++ GH V SV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 214 NKDLVLSASGDKSVHIW 230
+++S S DK++ +W
Sbjct: 118 KASMIISGSRDKTIKVW 134
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 22/113 (19%)
Query: 201 GHSGSVNSVRFLPNK-DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSIT 259
GH+G V S+ + +L+LSAS DK++ I+W+ D+
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTL------ISWKLTG-------------DDQKFG 55
Query: 260 LRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
+ PV+ GHS++V +DG ++ASWD+ L+DV TG Q GH
Sbjct: 56 V--PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 33/165 (20%)
Query: 156 SFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLWST-----QTGKCVLQYSGHSGSVNSV 209
+ GH V +A GQP +L SAS D+T+ W + G V + GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 210 RFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLG 269
+ LSAS DK++ +W + + +G
Sbjct: 72 TLTADGAYALSASWDKTLRLWD--------------------------VATGETYQRFVG 105
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
H + V++ D +I+ S D+ ++ ++ G L +L GH++
Sbjct: 106 HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND 149
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+RSF GH V D + SAS D+T+RLW TG+ ++ GH V SV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK 117
Query: 214 NKDLVLSASGDKSVHIW 230
++S S DK++ +W
Sbjct: 118 KASXIISGSRDKTIKVW 134
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 22/113 (19%)
Query: 201 GHSGSVNSVRFLPNK-DLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSIT 259
GH+G V S+ + +L+LSAS DK++ I+W+ D+
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTL------ISWKLTG-------------DDQKFG 55
Query: 260 LRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
+ PV+ GHS++V +DG ++ASWD+ L+DV TG Q GH
Sbjct: 56 V--PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 33/165 (20%)
Query: 156 SFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLWST-----QTGKCVLQYSGHSGSVNSV 209
+ GH V +A GQP +L SAS D+T+ W + G V + GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 210 RFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLG 269
+ LSAS DK++ +W + + +G
Sbjct: 72 TLTADGAYALSASWDKTLRLWD--------------------------VATGETYQRFVG 105
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
H + V + D +I+ S D+ ++ ++ G L +L GH++
Sbjct: 106 HKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATLLGHND 149
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 22/116 (18%)
Query: 201 GHSGSVNSVRFLPN-KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSIT 259
GH+G V + P D++LSAS DK++ +W+ DE++
Sbjct: 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT-------------------RDETNYG 76
Query: 260 LRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEE 315
+ P + L GHS+ V SDG+ ++ SWD L+D+ TGT + GH ++
Sbjct: 77 I--PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 130
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
R+ GH V DV + S S D T+RLW TG ++ GH+ V SV F +
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 215 KDLVLSASGDKSVHIWQAV 233
++S S DK++ +W +
Sbjct: 140 NRQIVSGSRDKTIKLWNTL 158
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 32/150 (21%)
Query: 156 SFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLW-----STQTGKCVLQYSGHSGSVNSV 209
+ GH V +A P P ++ SAS D+T+ +W T G GHS V+ V
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 210 RFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLG 269
+ LS S D ++ +W +T T + +G
Sbjct: 93 VISSDGQFALSGSWDGTLRLWD--------------------------LTTGTTTRRFVG 126
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFD 299
H+ V++ + SD Q+++ S D+ L++
Sbjct: 127 HTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 174 PVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 230
P++ S D+ V++W+ K + GH+G +N+V P+ L S D +W
Sbjct: 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 147 SLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSV 206
+L +C + GH + V V P + S D LW GK + G +
Sbjct: 201 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-II 259
Query: 207 NSVRFLPNKDLVLSASGDKSVHIW 230
N++ F PN+ + +A+G S+ IW
Sbjct: 260 NALCFSPNRYWLCAATG-PSIKIW 282
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 22/116 (18%)
Query: 201 GHSGSVNSVRFLPN-KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSIT 259
GH+G V + P D++LSAS DK++ +W+ DE++
Sbjct: 13 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT-------------------RDETNYG 53
Query: 260 LRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEE 315
+ P + L GHS+ V SDG+ ++ SWD L+D+ TGT + GH ++
Sbjct: 54 I--PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 107
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
R+ GH V DV + S S D T+RLW TG ++ GH+ V SV F +
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 215 KDLVLSASGDKSVHIWQAV 233
++S S DK++ +W +
Sbjct: 117 NRQIVSGSRDKTIKLWNTL 135
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 32/150 (21%)
Query: 156 SFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLW-----STQTGKCVLQYSGHSGSVNSV 209
+ GH V +A P P ++ SAS D+T+ +W T G GHS V+ V
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 210 RFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLG 269
+ LS S D ++ +W +T T + +G
Sbjct: 70 VISSDGQFALSGSWDGTLRLWD--------------------------LTTGTTTRRFVG 103
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFD 299
H+ V++ + SD Q+++ S D+ L++
Sbjct: 104 HTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 174 PVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 230
P++ S D+ V++W+ K + GH+G +N+V P+ L S D +W
Sbjct: 163 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 147 SLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSV 206
+L +C + GH + V V P + S D LW GK + G +
Sbjct: 178 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-II 236
Query: 207 NSVRFLPNKDLVLSASGDKSVHIW 230
N++ F PN+ + +A+G S+ IW
Sbjct: 237 NALCFSPNRYWLCAATG-PSIKIW 259
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 31/165 (18%)
Query: 153 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRF 211
K+ F H D + +AV P +P + S S D TV+LW+ + + Q + GH V V F
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 212 LPNKDLVLSASG--DKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLG 269
P KD ASG D++V +W S + TL T G
Sbjct: 149 NP-KDPSTFASGCLDRTVKVW-------------------SLGQSTPNFTLTT------G 182
Query: 270 HSNVVIAADW--LSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
V D+ L D +ITAS D ++D +T + + +L GH
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 166 DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDK 225
D P +P + +AS D T+++W QT CV GH +V+ F P +++S S D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 226 SVHIWQA 232
++ IW +
Sbjct: 251 TLKIWNS 257
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 150 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC 195
SC + + GH V P P++ S S D T+++W++ T K
Sbjct: 219 SC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 31/165 (18%)
Query: 153 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRF 211
K+ F H D + +AV P +P + S S D TV+LW+ + + Q + GH V V F
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 212 LPNKDLVLSASG--DKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLG 269
P KD ASG D++V +W S + TL T G
Sbjct: 149 NP-KDPSTFASGCLDRTVKVW-------------------SLGQSTPNFTLTT------G 182
Query: 270 HSNVVIAADW--LSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
V D+ L D +ITAS D ++D +T + + +L GH
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 166 DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDK 225
D P +P + +AS D T+++W QT CV GH +V+ F P +++S S D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 226 SVHIWQA 232
++ IW +
Sbjct: 251 TLKIWNS 257
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 150 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC 195
SC + + GH V P P++ S S D T+++W++ T K
Sbjct: 219 SC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 171 PGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 230
P +P + +AS D T+++W QT CV GH +V+ F P +++S S D ++ IW
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 231 QA 232
+
Sbjct: 256 NS 257
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 31/165 (18%)
Query: 153 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRF 211
K+ F H D + +AV P +P + S S D TV+LW+ + + Q + GH V V F
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 212 LPNKDLVLSASG--DKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLG 269
P KD ASG D++V +W S + TL T G
Sbjct: 149 NP-KDPSTFASGCLDRTVKVW-------------------SLGQSTPNFTLTT------G 182
Query: 270 HSNVVIAADW--LSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
V D+ L D +ITAS D ++D +T + + +L GH
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 150 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC 195
SC + + GH V P P++ S S D T+++W++ T K
Sbjct: 219 SC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 171 PGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 230
P +P + +AS D T+++W QT CV GH +V+ F P +++S S D ++ IW
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 231 QA 232
+
Sbjct: 256 NS 257
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 31/165 (18%)
Query: 153 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRF 211
K+ F H D + +AV P +P + S S D TV+LW+ + + Q + GH V V F
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 212 LPNKDLVLSASG--DKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLG 269
P KD ASG D++V +W S + TL T G
Sbjct: 149 NP-KDPSTFASGCLDRTVKVW-------------------SLGQSTPNFTLTT------G 182
Query: 270 HSNVVIAADW--LSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
V D+ L D +ITAS D ++D +T + + +L GH
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 150 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC 195
SC + + GH V P P++ S S D T+++W++ T K
Sbjct: 219 SC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 79/190 (41%), Gaps = 37/190 (19%)
Query: 141 VSSFKTSLLSCY---KIRSFSGHRDG---------VWDVAVRPGQPVLGSASADRTVRLW 188
V S + +L C+ +IR + D W P+L A + +R+
Sbjct: 41 VGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 100
Query: 189 STQTGKCVLQYSGHSGSVNSVRFLP-NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXX 247
+ T +C+ Y GH ++N ++F P + +L+LS S D ++ +W +
Sbjct: 101 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------------ 148
Query: 248 XESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQ 307
TL + GH + V++AD+ GE++++ D L+ + + ++
Sbjct: 149 -----------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN 197
Query: 308 SLT-GHDEEP 316
++ +D P
Sbjct: 198 AIKESYDYNP 207
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 79/190 (41%), Gaps = 37/190 (19%)
Query: 141 VSSFKTSLLSCY---KIRSFSGHRDG---------VWDVAVRPGQPVLGSASADRTVRLW 188
V S + +L C+ +IR + D W P+L A + +R+
Sbjct: 40 VGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 99
Query: 189 STQTGKCVLQYSGHSGSVNSVRFLP-NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXX 247
+ T +C+ Y GH ++N ++F P + +L+LS S D ++ +W +
Sbjct: 100 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------------ 147
Query: 248 XESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQ 307
TL + GH + V++AD+ GE++++ D L+ + + ++
Sbjct: 148 -----------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN 196
Query: 308 SLT-GHDEEP 316
++ +D P
Sbjct: 197 AIKESYDYNP 206
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 79/190 (41%), Gaps = 37/190 (19%)
Query: 141 VSSFKTSLLSCY---KIRSFSGHRDG---------VWDVAVRPGQPVLGSASADRTVRLW 188
V S + +L C+ +IR + D W P+L A + +R+
Sbjct: 40 VGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 99
Query: 189 STQTGKCVLQYSGHSGSVNSVRFLP-NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXX 247
+ T +C+ Y GH ++N ++F P + +L+LS S D ++ +W +
Sbjct: 100 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------------ 147
Query: 248 XESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQ 307
TL + GH + V++AD+ GE++++ D L+ + + ++
Sbjct: 148 -----------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN 196
Query: 308 SLT-GHDEEP 316
++ +D P
Sbjct: 197 AIKESYDYNP 206
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 26/171 (15%)
Query: 154 IRSFSGHRDGVWDVAVRPGQP--VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRF 211
++SF GH V + + P + S D+ +W ++G+CV + H VNSVR+
Sbjct: 189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY 248
Query: 212 LPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHS 271
P+ D S S D + ++ + E + + + + G S
Sbjct: 249 YPSGDAFASGSDDATCRLYDLRADRE--------------------VAIYSKESIIFGAS 288
Query: 272 NVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVS 322
+V D+ G + D N++DV G+ + L GH+ L VS
Sbjct: 289 SV----DFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS 335
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 265 KELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCV 321
K + H+N + A + + Q++TAS D L+DVE+G +LQS GH + +LC+
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD--VLCL 202
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 178 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK--DLVLSASGDKSVHIW 230
+AS D T LW ++G+ + + GH V + P++ + +S DK +W
Sbjct: 171 TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 175 VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 230
+L + D T+ +W G V GH V+++R P+ S S D ++ +W
Sbjct: 298 LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 79/190 (41%), Gaps = 37/190 (19%)
Query: 141 VSSFKTSLLSCY---KIRSFSGHRDG---------VWDVAVRPGQPVLGSASADRTVRLW 188
V S + +L C+ +IR + D W P+L A + +R+
Sbjct: 77 VGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 136
Query: 189 STQTGKCVLQYSGHSGSVNSVRFLP-NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXX 247
+ T +C+ Y GH ++N ++F P + +L+LS S D ++ +W +
Sbjct: 137 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------------ 184
Query: 248 XESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQ 307
TL + GH + V++AD+ GE++++ D L+ + + ++
Sbjct: 185 -----------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN 233
Query: 308 SLT-GHDEEP 316
++ +D P
Sbjct: 234 AIKESYDYNP 243
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 79/190 (41%), Gaps = 37/190 (19%)
Query: 141 VSSFKTSLLSCY---KIRSFSGHRDG---------VWDVAVRPGQPVLGSASADRTVRLW 188
V S + +L C+ +IR + D W P+L A + +R+
Sbjct: 36 VGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 95
Query: 189 STQTGKCVLQYSGHSGSVNSVRFLP-NKDLVLSASGDKSVHIWQAVINWECXXXXXXXXX 247
+ T +C+ Y GH ++N ++F P + +L+LS S D ++ +W +
Sbjct: 96 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------------ 143
Query: 248 XESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQ 307
TL + GH + V++AD+ GE++++ D L+ + + ++
Sbjct: 144 -----------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN 192
Query: 308 SLT-GHDEEP 316
++ +D P
Sbjct: 193 AIKESYDYNP 202
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 78/191 (40%), Gaps = 35/191 (18%)
Query: 130 TNKLKVQTSKIVSSFKTSLLSCYKIR--------SFSGHRDGVWDVAVRPGQPVLGSASA 181
TNK K + +V+ L+ +K R S GH+ GV V + P+ S+S
Sbjct: 42 TNK-KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL 100
Query: 182 DRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECXXX 241
D +RLW + GK + ++ F P+ + + + V+I+
Sbjct: 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV--------- 151
Query: 242 XXXXXXXESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVE 301
E + +L T K +++ + DG+ + + + D + N+FD+
Sbjct: 152 ----------ESGKKEYSLDTRGK-------FILSIAYSPDGKYLASGAIDGIINIFDIA 194
Query: 302 TGTILQSLTGH 312
TG +L +L GH
Sbjct: 195 TGKLLHTLEGH 205
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 156 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 215
+ SGH V +VA P S+S+D++V++W T CV + H V V++ N
Sbjct: 243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG 302
Query: 216 DLVLSASGDKSVHIWQAVI 234
++S D+ +HI+ I
Sbjct: 303 SKIVSVGDDQEIHIYDCPI 321
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+ + GH + + P +L +AS D ++++ Q SGH+ V +V F P
Sbjct: 199 LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Query: 214 N 214
+
Sbjct: 259 D 259
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 160 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 219
H V +++ P + S + D + +LW + G C ++GH +N++ F PN +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 220 SASGDKSVHIW 230
+ S D + ++
Sbjct: 243 TGSDDATCRLF 253
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 27/123 (21%)
Query: 198 QYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESS 257
+ +GH+G ++ RFL + +V S SGD + +W
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWD-------------------------- 170
Query: 258 ITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPH 317
I GH+ V++ D ++ + D A L+DV G Q+ TGH+ + +
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 230
Query: 318 ILC 320
+C
Sbjct: 231 AIC 233
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 178 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 230
++S D T LW +TG+ ++GH+G V S+ P+ L +S + D S +W
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 160 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 219
H V +++ P + S + D + +LW + G C ++GH +N++ F PN +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 220 SASGDKSVHIW 230
+ S D + ++
Sbjct: 254 TGSDDATCRLF 264
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 27/123 (21%)
Query: 198 QYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESS 257
+ +GH+G ++ RFL + +V S SGD + +W
Sbjct: 149 ELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWD-------------------------- 181
Query: 258 ITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPH 317
I GH+ V++ D ++ + D A L+DV G Q+ TGH+ + +
Sbjct: 182 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 241
Query: 318 ILC 320
+C
Sbjct: 242 AIC 244
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 178 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 230
++S D T LW +TG+ ++GH+G V S+ P+ L +S + D S +W
Sbjct: 170 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 222
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 160 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 219
H V +++ P + S + D + +LW + G C ++GH +N++ F PN +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 220 SASGDKSVHIW 230
+ S D + ++
Sbjct: 243 TGSDDATCRLF 253
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 27/123 (21%)
Query: 198 QYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESS 257
+ +GH+G ++ RFL + +V S SGD + +W
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWD-------------------------- 170
Query: 258 ITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPH 317
I GH+ V++ D ++ + D A L+DV G Q+ TGH+ + +
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 230
Query: 318 ILC 320
+C
Sbjct: 231 AIC 233
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 178 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 230
++S D T LW +TG+ ++GH+G V S+ P+ L +S + D S +W
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 160 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 219
H V +++ P + S + D + +LW + G C ++GH +N++ F PN +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 220 SASGDKSVHIW 230
+ S D + ++
Sbjct: 243 TGSDDATCRLF 253
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 27/123 (21%)
Query: 198 QYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESS 257
+ +GH+G ++ RFL + +V S SGD + +W
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWD-------------------------- 170
Query: 258 ITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPH 317
I GH+ V++ D ++ + D A L+DV G Q+ TGH+ + +
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 230
Query: 318 ILC 320
+C
Sbjct: 231 AIC 233
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 178 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 230
++S D T LW +TG+ ++GH+G V S+ P+ L +S + D S +W
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 160 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 219
H V +++ P + S + D + +LW + G C ++GH +N++ F PN +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 220 SASGDKSVHIW 230
+ S D + ++
Sbjct: 243 TGSDDATCRLF 253
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 27/123 (21%)
Query: 198 QYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESS 257
+ +GH+G ++ RFL + +V S SGD + +W
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWD-------------------------- 170
Query: 258 ITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPH 317
I GH+ V++ D ++ + D A L+DV G Q+ TGH+ + +
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 230
Query: 318 ILC 320
+C
Sbjct: 231 AIC 233
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 178 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 230
++S D T LW +TG+ ++GH+G V S+ P+ L +S + D S +W
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 154 IRSFSG-HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFL 212
I++FSG H D V +AV + S S D ++L TG + Y GH V ++ L
Sbjct: 176 IKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLL 234
Query: 213 PNKDLVLSASGDKSVHIW 230
PN D+V S D++V IW
Sbjct: 235 PNGDIV-SCGEDRTVRIW 251
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 39/171 (22%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSV---NSVR 210
+ + GH+ V ++ + G V+ S S D+T ++W + G V H+ SV V
Sbjct: 97 LYTLIGHQGNVCSLSFQDG--VVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVS 152
Query: 211 FLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGH 270
F NK L+AS DK++ +WQ +K G
Sbjct: 153 FSENK--FLTASADKTIKLWQN----------------------------DKVIKTFSGI 182
Query: 271 SNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCV 321
N V+ + D I+ S D + L D TG +L++ GH E + C+
Sbjct: 183 HNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGH--ESFVYCI 231
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+R++ GH V+ + + P ++ S DRTVR+WS + G + + S+ SV
Sbjct: 218 LRTYEGHESFVYCIKLLPNGDIV-SCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXS 276
Query: 214 NKDLVLSAS 222
N D+++ +S
Sbjct: 277 NGDIIVGSS 285
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 33/141 (23%)
Query: 176 LGSASADRTVRLWSTQ---TGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQA 232
+ S S D TVRLWS G V Y+G G +NSV + K+L+L D ++
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVV--YTGQ-GFLNSVCYDSEKELLLFGGKDTXIN---- 84
Query: 233 VINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWD 292
S E P+ L+GH V + DG VI+ SWD
Sbjct: 85 ----------GVPLFATSGED---------PLYTLIGHQGNVCSLS-FQDG-VVISGSWD 123
Query: 293 RVANLFDVETGTILQSLTGHD 313
+ A ++ + G+++ +L H+
Sbjct: 124 KTAKVW--KEGSLVYNLQAHN 142
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 178 SASADRTVRLWSTQ-TGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 230
S S D TVRLW + T + V Y GH G +NSV+F P+ + S D + ++
Sbjct: 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 92/247 (37%), Gaps = 42/247 (17%)
Query: 134 KVQTSKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTG 193
K Q VS T L+ C R+ GH V+ + P + + SAS D + +W+ T
Sbjct: 42 KAQGRTAVSFNPTDLVCC---RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS 98
Query: 194 KCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEP 253
+ H V F PN V D + I+ S +
Sbjct: 99 QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL-----------------SSQA 141
Query: 254 DESSITLRTPVKELL-GHSNVVIAADWLSDGE-QVITASWDRVANLFDVETGTILQSL-- 309
D PV +L GH + ++ D E ++IT S D+ L+DV TG +
Sbjct: 142 DRDG---NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS 198
Query: 310 ---TGHDEEPHILCVSSYYSKV----SCDLFQRIQHLDCGTS--------ENPIHSVCVF 354
+GH + L ++S + + SCD R+ L + E I+SV F
Sbjct: 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFF 258
Query: 355 QDIQSTG 361
D Q G
Sbjct: 259 PDGQRFG 265
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGS-------V 206
+R++ GH + V P G+ S D T RL+ +TG + Y+ V
Sbjct: 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV 301
Query: 207 NSVRFLPNKDLVLSASGDKSVHIWQAVI 234
SV F + L+ + + ++W ++
Sbjct: 302 TSVAFSISGRLLFAGYSNGDCYVWDTLL 329
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 175 VLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRFLPNKDLVLSASG-DKSVHIW 230
+L + SAD+TV LW + K L + H + V++ P+ + +L++SG D+ +H+W
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 175 VLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRFLPNKDLVLSASG-DKSVHIW 230
+L + SAD+TV LW + K L + H + V++ P+ + +L++SG D+ +H+W
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 175 VLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRFLPNKDLVLSASG-DKSVHIW 230
+L + SAD+TV LW + K L + H + V++ P+ + +L++SG D+ +H+W
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 154 IRSFSGHRDGVW--DVAVRPGQPVLGSASADRTVRLWSTQTGKC--VLQYSGHSGSVNSV 209
I + +GH VW D A +L S S D V +W + G+ + ++ HS SVNSV
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV 105
Query: 210 RFLPNK--DLVLSASGDKSVHI 229
++ P++ L+L AS D V +
Sbjct: 106 QWAPHEYGPLLLVASSDGKVSV 127
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 154 IRSFSGHRDGVW--DVAVRPGQPVLGSASADRTVRLWSTQTGKC--VLQYSGHSGSVNSV 209
I + +GH VW D A +L S S D V +W + G+ + ++ HS SVNSV
Sbjct: 48 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV 107
Query: 210 RFLPNK--DLVLSASGDKSVHI 229
++ P++ L+L AS D V +
Sbjct: 108 QWAPHEYGPLLLVASSDGKVSV 129
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 154 IRSFSGHRDGVW--DVAVRPGQPVLGSASADRTVRLWSTQTGKC--VLQYSGHSGSVNSV 209
I + +GH VW D A +L S S D V +W + G+ + ++ HS SVNSV
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV 105
Query: 210 RFLPNK--DLVLSASGDKSVHI 229
++ P++ L+L AS D V +
Sbjct: 106 QWAPHEYGPLLLVASSDGKVSV 127
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 154 IRSFSGHRDGVW--DVAVRPGQPVLGSASADRTVRLWSTQTGKC--VLQYSGHSGSVNSV 209
I + +GH VW D A +L S S D V +W + G+ + ++ HS SVNSV
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSV 105
Query: 210 RFLPNK--DLVLSASGDKSVHI 229
++ P++ ++L AS D V +
Sbjct: 106 QWAPHEYGPMLLVASSDGKVSV 127
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 143 SFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWST-QTGK---CVLQ 198
+F+ LL+ GH + V VA L + S D++V +W T ++G+ C+
Sbjct: 94 TFEMDLLAI-----IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV 148
Query: 199 YSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAV-INWEC 238
HS V V + P++ L+ S+S D +V IW+ +WEC
Sbjct: 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC 189
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 25/152 (16%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC----VLQYSGHSGSVNSV 209
I+S +++ +W + Q +L + S DR ++L S + VL + H ++ SV
Sbjct: 7 IKSLKLYKEKIW--SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSV 64
Query: 210 RFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLG 269
+ P+ L+ + S D +V IW +KE + + G
Sbjct: 65 AWRPHTSLLAAGSFDSTVSIW-------------------AKEESADRTFEMDLLAIIEG 105
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFDVE 301
H N V W +DG + T S D+ +++ +
Sbjct: 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 33/157 (21%)
Query: 159 GHRDGVWDVAVRP-GQPVLGSASADRTVRLWSTQTGKCVLQY-------SGHSGSVNSVR 210
GH V D+A P V+ S S D TV +W G VL GH+ V V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 211 FLPN-KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLG 269
+ P ++++LSA D + +W + +TL V
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTG-------------------AAVLTLGPDV----- 174
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFDVETGTIL 306
H + + + DW DG + T+ D+ + + GT++
Sbjct: 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 37/168 (22%)
Query: 159 GHRDGVWDVAVRP-GQPVLGSASADRTVRLWSTQTGKCVLQY-------SGHSGSVNSVR 210
GH V D+A P V+ S S D TV +W G VL GH+ V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 211 FLPN-KDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLG 269
+ P ++++LSA D + +W + +TL V
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTG-------------------AAVLTLGPDV----- 174
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPH 317
H + + + DW DG + T+ D+ + + GT++ + PH
Sbjct: 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV----AEKDRPH 218
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 175 VLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRFLPNKDLVLSASG-DKSVHIW 230
+L + SAD+TV LW + K L + H + V++ P+ + +L++SG D+ +++W
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 20/137 (14%)
Query: 167 VAVRPGQPV-LGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDK 225
V +P +P + S S D TV ++ K + H+ V+SVR+ P+ L S GD
Sbjct: 153 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 212
Query: 226 SVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQ 285
++ ++ V + ++ + +K + HS V W DG +
Sbjct: 213 TIVLYNGV------------------DGTKTGVFEDDSLKN-VAHSGSVFGLTWSPDGTK 253
Query: 286 VITASWDRVANLFDVET 302
+ +AS D+ +++V T
Sbjct: 254 IASASADKTIKIWNVAT 270
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 152 YKIRS-FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWS----TQTGKC---VLQYSGHS 203
+K +S F H V V P + S D T+ L++ T+TG L+ HS
Sbjct: 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239
Query: 204 GSVNSVRFLPNKDLVLSASGDKSVHIWQ 231
GSV + + P+ + SAS DK++ IW
Sbjct: 240 GSVFGLTWSPDGTKIASASADKTIKIWN 267
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 175 VLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRFLPNKDLVLSASG-DKSVHIW 230
+L + SAD+TV LW + K L + H + V + P+ + +L++SG D+ +++W
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 175 VLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRFLPNKDLVLSASG-DKSVHIW 230
+L + SAD+TV LW + K L + H + V + P+ + +L++SG D+ +++W
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 154 IRSFSGHRDGVW--DVAVRPGQPVLGSASADRTVRLWSTQTGKC--VLQYSGHSGSVNSV 209
I + +GH VW D A +L S S D V +W + G+ + ++ HS SVNSV
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSV 105
Query: 210 RFLPNK--DLVLSASGDKSVHI 229
++ P++ +L AS D V +
Sbjct: 106 QWAPHEYGPXLLVASSDGKVSV 127
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 149 LSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNS 208
++ ++I + GH V +A R L S D V++W ++ + H+ +V +
Sbjct: 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264
Query: 209 VRFLPNKDLVLSASG---DKSVHIWQAV 233
V + P + +L+ G DK +H W A
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHFWNAA 292
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 155 RSFSGHRDGVWDVAV-RPGQPVLGSASADRTVRLWSTQTGKCVLQY----SGHSGSVNSV 209
R+ GHR V D+A+ G+ VL SAS D T+RLW TG + + + H G VNS+
Sbjct: 172 RTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIHTFNRKENPHDG-VNSI 229
Query: 210 RFLPNKD 216
D
Sbjct: 230 ALFVGTD 236
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 87/236 (36%), Gaps = 54/236 (22%)
Query: 100 NDMECVTNMNKNFNKQKVLASNPSAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKIRSFSG 159
ND E N++KN N+ K + + N V K ++F+ YK R G
Sbjct: 24 NDDEFYINVDKNLNEIK------EHKIVVLGNSRGVDAGK-GNTFEKVGSHLYKAR-LDG 75
Query: 160 HRDGVWDVAVRPGQPVLGSASAD---------RTVRLWSTQTGKCVLQYS---------G 201
H D +++ +R G +L A R L +T+ VL +
Sbjct: 76 H-DFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 134
Query: 202 HSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLR 261
H + ++F P+ + ++S+S D + IW + P
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSV---------------KDGSNP-------- 171
Query: 262 TPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPH 317
+ L+GH V + G V++AS D L++ TGT + + E PH
Sbjct: 172 ---RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN-RKENPH 223
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 155 RSFSGHRDGVWDVAV-RPGQPVLGSASADRTVRLWSTQTGKCVLQY----SGHSGSVNSV 209
R+ GHR V D+A+ G+ VL SAS D T+RLW TG + + + H G VNS+
Sbjct: 175 RTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIHTFNRKENPHDG-VNSI 232
Query: 210 RFLPNKD 216
D
Sbjct: 233 ALFVGTD 239
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 87/236 (36%), Gaps = 54/236 (22%)
Query: 100 NDMECVTNMNKNFNKQKVLASNPSAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKIRSFSG 159
ND E N++KN N+ K + + N V K ++F+ YK R G
Sbjct: 27 NDDEFYINVDKNLNEIK------EHKIVVLGNSRGVDAGK-GNTFEKVGSHLYKAR-LDG 78
Query: 160 HRDGVWDVAVRPGQPVLGSASAD---------RTVRLWSTQTGKCVLQYS---------G 201
H D +++ +R G +L A R L +T+ VL +
Sbjct: 79 H-DFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137
Query: 202 HSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLR 261
H + ++F P+ + ++S+S D + IW + P
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSV---------------KDGSNP-------- 174
Query: 262 TPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPH 317
+ L+GH V + G V++AS D L++ TGT + + E PH
Sbjct: 175 ---RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN-RKENPH 226
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 154 IRSFSGHRDGVWDVAVRPGQP----VLGSASADRTVRLWSTQTGKC--VLQYSGHSGSVN 207
I GH VW VA P +L S S DR V +W + G +++GH SVN
Sbjct: 50 IADLRGHEGPVWQVAW--AHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN 107
Query: 208 SVRFLPNKDLVLSASG 223
SV + P+ ++ A G
Sbjct: 108 SVCWAPHDYGLILACG 123
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 32/150 (21%)
Query: 154 IRSFSGHRDGVWDVAVRPGQP---VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 210
+++F+ H+ V VA P Q G ++DR +R+W+ +G C+ HS V S+
Sbjct: 269 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSIL 327
Query: 211 FLPNKDLVLSASG--DKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELL 268
+ P+ ++S G + IW K P + V EL
Sbjct: 328 WSPHYKELISGHGFAQNQLVIW--------------------KYPTMAK------VAELK 361
Query: 269 GHSNVVIAADWLSDGEQVITASWDRVANLF 298
GH++ V++ DG V +A+ D L+
Sbjct: 362 GHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 152 YKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGK---CVLQ-YSGHSGSVN 207
+ + + SGH V + P L S D V +W + G+ LQ ++ H G+V
Sbjct: 221 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 280
Query: 208 SVRFLPNKDLVLSASG---DKSVHIW 230
+V + P + VL+ G D+ + IW
Sbjct: 281 AVAWCPWQSNVLATGGGTSDRHIRIW 306
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 25/145 (17%)
Query: 196 VLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDE 255
V SGHS V +R+ P+ + S D V++W + P E
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA-------------------PGE 263
Query: 256 SSITLRTPVKELLGHSNVVIAADWLSDGEQVIT---ASWDRVANLFDVETGTILQSLTGH 312
P++ H V A W V+ + DR +++V +G L ++ H
Sbjct: 264 GGW---VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320
Query: 313 DEEPHILCVSSYYSKVSCDLFQRIQ 337
+ IL Y +S F + Q
Sbjct: 321 SQVCSILWSPHYKELISGHGFAQNQ 345
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 175 VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQ 231
+ G A + +W T V + GH+ V S+ P+ V SA+ D+++ +W+
Sbjct: 336 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 153 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLW 188
K+ GH V + + P + SA+AD T+RLW
Sbjct: 356 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 175 VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 230
+L SAS D T+R+W G + GHS S+ S ++ + D V+S S D SV +W
Sbjct: 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD-DKVISCSMDGSVRLW 315
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 31/117 (26%)
Query: 190 TQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXE 249
T TGK + GH G ++ + F L+LSAS D ++ IW
Sbjct: 238 TPTGKLI----GHHGPISVLEFNDTNKLLLSASDDGTLRIWHG-------------GNGN 280
Query: 250 SKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTIL 306
S+ GHS +++A W+ D ++VI+ S D L+ ++ T+L
Sbjct: 281 SQNC-------------FYGHSQSIVSASWVGD-DKVISCSMDGSVRLWSLKQNTLL 323
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 32/150 (21%)
Query: 154 IRSFSGHRDGVWDVAVRPGQP---VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 210
+++F+ H+ V VA P Q G ++DR +R+W+ +G C+ HS V S+
Sbjct: 280 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSIL 338
Query: 211 FLPNKDLVLSASG--DKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELL 268
+ P+ ++S G + IW K P + V EL
Sbjct: 339 WSPHYKELISGHGFAQNQLVIW--------------------KYPTMAK------VAELK 372
Query: 269 GHSNVVIAADWLSDGEQVITASWDRVANLF 298
GH++ V++ DG V +A+ D L+
Sbjct: 373 GHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 152 YKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGK---CVLQ-YSGHSGSVN 207
+ + + SGH V + P L S D V +W + G+ LQ ++ H G+V
Sbjct: 232 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 291
Query: 208 SVRFLPNKDLVLSASG---DKSVHIW 230
+V + P + VL+ G D+ + IW
Sbjct: 292 AVAWCPWQSNVLATGGGTSDRHIRIW 317
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 25/145 (17%)
Query: 196 VLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDE 255
V SGHS V +R+ P+ + S D V++W + P E
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA-------------------PGE 274
Query: 256 SSITLRTPVKELLGHSNVVIAADWLSDGEQVIT---ASWDRVANLFDVETGTILQSLTGH 312
P++ H V A W V+ + DR +++V +G L ++ H
Sbjct: 275 GGW---VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 331
Query: 313 DEEPHILCVSSYYSKVSCDLFQRIQ 337
+ IL Y +S F + Q
Sbjct: 332 SQVCSILWSPHYKELISGHGFAQNQ 356
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 175 VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQ 231
+ G A + +W T V + GH+ V S+ P+ V SA+ D+++ +W+
Sbjct: 347 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 153 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLW 188
K+ GH V + + P + SA+AD T+RLW
Sbjct: 367 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 32/150 (21%)
Query: 154 IRSFSGHRDGVWDVAVRPGQP---VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 210
+++F+ H+ V VA P Q G ++DR +R+W+ +G C+ HS V S+
Sbjct: 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSIL 247
Query: 211 FLPNKDLVLSASG--DKSVHIWQAVINWECXXXXXXXXXXESKEPDESSITLRTPVKELL 268
+ P+ ++S G + IW K P + V EL
Sbjct: 248 WSPHYKELISGHGFAQNQLVIW--------------------KYPTMAK------VAELK 281
Query: 269 GHSNVVIAADWLSDGEQVITASWDRVANLF 298
GH++ V++ DG V +A+ D L+
Sbjct: 282 GHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 152 YKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGK---CVLQ-YSGHSGSVN 207
+ + + SGH V + P L S D V +W + G+ LQ ++ H G+V
Sbjct: 141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 200
Query: 208 SVRFLPNKDLVLSASG---DKSVHIW 230
+V + P + VL+ G D+ + IW
Sbjct: 201 AVAWCPWQSNVLATGGGTSDRHIRIW 226
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 25/145 (17%)
Query: 196 VLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECXXXXXXXXXXESKEPDE 255
V SGHS V +R+ P+ + S D V++W + P E
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA-------------------PGE 183
Query: 256 SSITLRTPVKELLGHSNVVIAADWLSDGEQVIT---ASWDRVANLFDVETGTILQSLTGH 312
P++ H V A W V+ + DR +++V +G L ++ H
Sbjct: 184 GGW---VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 313 DEEPHILCVSSYYSKVSCDLFQRIQ 337
+ IL Y +S F + Q
Sbjct: 241 SQVCSILWSPHYKELISGHGFAQNQ 265
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 177 GSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQ 231
G A + +W T V + GH+ V S+ P+ V SA+ D+++ +W+
Sbjct: 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 153 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLW 188
K+ GH V + + P + SA+AD T+RLW
Sbjct: 276 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 178 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFL--PNKDLVLSASGDKSVHIW 230
+AS D+T ++W + + +Q + H V ++ ++ PN V++ S DK++ W
Sbjct: 103 TASCDKTAKMWDLSSNQ-AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHD 313
H+ V+ W DG +V TAS D+ A ++D+ + +Q + HD
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHD 127
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 149 LSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNS 208
L+ ++ + GH +W + V + SAD +++LW G+CV + V
Sbjct: 62 LNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKR 120
Query: 209 VRFLPNKDLVLS 220
V F P + L+
Sbjct: 121 VEFSPCGNYFLA 132
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 153 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFL 212
K +GH + V +L S S D + +W + G+ + GH+G++ S+
Sbjct: 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVD 83
Query: 213 PNKDLVLSASGDKSVHIWQAVINWEC 238
++ S D S+ +W V N +C
Sbjct: 84 CFTKYCVTGSADYSIKLWD-VSNGQC 108
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 160 HRDGVWDVAVRPG-QPVLGSASADRTVRLWSTQ--TGKCVLQYS-GHSGSVNSVRFLPNK 215
H+ V VA+ P L +AS D+TV++W + GK YS H VN+ F P+
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 216 DLVLSASGDKSVHIWQAVINWEC 238
+L+ + ++ A W+C
Sbjct: 309 ARLLTTDQKSEIRVYSAS-QWDC 330
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 160 HRDGVWDVAVRPG-QPVLGSASADRTVRLWSTQ--TGKCVLQYS-GHSGSVNSVRFLPNK 215
H+ V VA+ P L +AS D+TV++W + GK YS H VN+ F P+
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 216 DLVLSASGDKSVHIWQAVINWEC 238
+L+ + ++ A W+C
Sbjct: 309 ARLLTTDQKSEIRVYSAS-QWDC 330
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 160 HRDGVWDVAVRPG-QPVLGSASADRTVRLWSTQ--TGKCVLQYS-GHSGSVNSVRFLPNK 215
H+ V VA+ P L +AS D+TV++W + GK YS H VN+ F P+
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 216 DLVLSASGDKSVHIWQAVINWEC 238
+L+ + ++ A W+C
Sbjct: 310 ARLLTTDQKSEIRVYSAS-QWDC 331
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 19/100 (19%)
Query: 150 SCYKIRSFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLWSTQTGKCVL----QYSG--- 201
SC I GHR + V+ P +L +ASAD V+LW + L Q++G
Sbjct: 177 SCSHI--LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234
Query: 202 ---------HSGSVNSVRFLPNKDLVLSASGDKSVHIWQA 232
H+G VN + F + +L+ D + +W +
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS 274
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 178 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLV-LSASGDKSVHIW 230
S D +V++W + Y+ HS VN V P KD + LS D + +W
Sbjct: 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
>pdb|3F9F|A Chain A, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 6.0
pdb|3F9F|B Chain B, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 6.0
pdb|3F9H|A Chain A, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 7.6
pdb|3F9H|B Chain B, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 7.6
Length = 308
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 13/66 (19%)
Query: 114 KQKVLASNPSAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQ 173
+ KV SNP K K +++Q + S +L+CY +G GV+ A+RP
Sbjct: 90 RLKVDTSNPKTPKYKF---VRIQPGQTFS-----VLACY-----NGSPSGVYQCAMRPNH 136
Query: 174 PVLGSA 179
+ GSA
Sbjct: 137 TIKGSA 142
>pdb|3F9G|A Chain A, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 6.5
pdb|3F9G|B Chain B, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 6.5
Length = 303
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 13/66 (19%)
Query: 114 KQKVLASNPSAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQ 173
+ KV SNP K K +++Q + S +L+CY +G GV+ A+RP
Sbjct: 90 RLKVDTSNPKTPKYKF---VRIQPGQTFS-----VLACY-----NGSPSGVYQCAMRPNH 136
Query: 174 PVLGSA 179
+ GSA
Sbjct: 137 TIKGSA 142
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 15/161 (9%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+R F GH DG + + L + D TVR W + G+ LQ + + S+ + P
Sbjct: 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQHDFTSQIFSLGYCP 234
Query: 214 NKDLV---LSASGDKSVHI-----WQAVINWECXXXXXXXXXXE---SKEPDESSITLRT 262
+ + + +S + +H+ +Q ++ C + S D RT
Sbjct: 235 TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
Query: 263 PVKELL---GHSNVVIAADWLSDGEQVITASWDRVANLFDV 300
P + S+ V++ D D + ++T S D+ A +++V
Sbjct: 295 PYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 133 LKVQTSKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQT 192
L T +I + +S +CY + A+ P V S +D + +W
Sbjct: 126 LAAPTPRIKAELTSSAPACYAL-------------AISPDSKVCFSCCSDGNIAVWDLHN 172
Query: 193 GKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 230
V Q+ GH+ + + + + + D +V W
Sbjct: 173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 175 VLGSASADRTVRLWSTQTGKCVL----QYSGHSGSVNSVRFLPNKDLVLSASGDKS-VHI 229
++ A + ++ L+ST + ++S HS SV +V+F +D VL++ G+ + I
Sbjct: 81 IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFI 140
Query: 230 W 230
W
Sbjct: 141 W 141
>pdb|3A8P|A Chain A, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|B Chain B, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|C Chain C, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8P|D Chain D, Crystal Structure Of The Tiam2 Phccex Domain
pdb|3A8Q|A Chain A, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|B Chain B, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|C Chain C, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
pdb|3A8Q|D Chain D, Low-Resolution Crystal Structure Of The Tiam2 Phccex
Domain
Length = 263
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 304 TILQSLTGHDEEPHILCVSSYYSKVSCDLFQRIQHLDCGTSENPIHSVCV 353
+I+QS+ H ++ H+ C+S+ V LFQ D IHS C
Sbjct: 77 SIVQSVPEHPKKEHVFCLSNSCGDVY--LFQATSQTDLENWVTAIHSACA 124
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 178 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLV-LSASGDKSVHIW 230
S S D +++W + Y H+ V V P+KD V LS S D + +W
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,702,154
Number of Sequences: 62578
Number of extensions: 354689
Number of successful extensions: 1459
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 766
Number of HSP's gapped (non-prelim): 441
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)