RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8430
(361 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 82.5 bits (202), Expect = 2e-18
Identities = 44/213 (20%), Positives = 69/213 (32%), Gaps = 16/213 (7%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+ SGHR V V P V+ SAS D T+++W +TG GH+ SV + F
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69
Query: 214 NKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRT----------- 262
+ L+ S S D ++ +W S + + +
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129
Query: 263 -----PVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPH 317
VK GH V DG + + S D+ ++ V T L H
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189
Query: 318 ILCVSSYYSKVSCDLFQRIQHLDCGTSENPIHS 350
+ + S S + G + S
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLS 222
Score = 81.3 bits (199), Expect = 5e-18
Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 26/149 (17%)
Query: 151 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 210
S G P L S S D+T+++W TG C++ GH V V
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL 254
Query: 211 FLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGH 270
F +LS + DK++ +W D + +K L H
Sbjct: 255 FHSGGKFILSCADDKTLRVW---------------DYKNKR-----------CMKTLNAH 288
Query: 271 SNVVIAADWLSDGEQVITASWDRVANLFD 299
+ V + D+ V+T S D+ +++
Sbjct: 289 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 79.0 bits (193), Expect = 4e-17
Identities = 37/173 (21%), Positives = 71/173 (41%), Gaps = 6/173 (3%)
Query: 150 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+ Y +++F+GHR+ V V ++ S S D+TVR+W T +C + H V +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 210 RFLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLG 269
+ P + S L+ D + K D S+ + L+G
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI---KMWDVST---GMCLMTLVG 245
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVS 322
H N V + S G+ +++ + D+ ++D + +++L H+ L
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 298
Score = 61.3 bits (147), Expect = 3e-11
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 6/173 (3%)
Query: 151 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 210
IR+ GH V V++ P + SAS D+T+++W QTG CV ++GH V VR
Sbjct: 91 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 150
Query: 211 FLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGH 270
+ L+ S S D++V +W V EC ++L E + E +
Sbjct: 151 PNQDGTLIASCSNDQTVRVWV-VATKECK-----AELREHRHVVECISWAPESSYSSISE 204
Query: 271 SNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSS 323
+ G +++ S D+ ++DV TG L +L GHD + S
Sbjct: 205 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 257
Score = 49.7 bits (117), Expect = 2e-07
Identities = 16/90 (17%), Positives = 31/90 (34%)
Query: 263 PVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVS 322
L GH + V + +++AS D ++D ETG ++L GH + +
Sbjct: 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68
Query: 323 SYYSKVSCDLFQRIQHLDCGTSENPIHSVC 352
++ L I ++
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTMH 98
Score = 42.0 bits (97), Expect = 6e-05
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 147 SLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLW 188
+ +++ + H V + P + + S D+TV++W
Sbjct: 275 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 79.0 bits (193), Expect = 5e-17
Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 24/172 (13%)
Query: 151 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 210
+ +F+GH V +++ P + S + D + +LW + G C ++GH +N++
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 211 FLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGH 270
F PN + + S D + ++ + E + +D+
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN------------------------I 269
Query: 271 SNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVS 322
+ + + G ++ D N++D L GHD L V+
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Score = 74.0 bits (180), Expect = 2e-15
Identities = 14/80 (17%), Positives = 25/80 (31%)
Query: 151 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 210
S G+ V+ +L + D +W +GH V+ +
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319
Query: 211 FLPNKDLVLSASGDKSVHIW 230
+ V + S D + IW
Sbjct: 320 VTDDGMAVATGSWDSFLKIW 339
Score = 72.5 bits (176), Expect = 6e-15
Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 28/148 (18%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRL--WSTQTGKCVLQYSGHSGSVNSVRF 211
++F+GH + + P + S D T RL + + SV F
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278
Query: 212 LPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHS 271
+ L+L+ D + ++W D ++ L GH
Sbjct: 279 SKSGRLLLAGYDDFNCNVW---------------DALKAD-----------RAGVLAGHD 312
Query: 272 NVVIAADWLSDGEQVITASWDRVANLFD 299
N V DG V T SWD +++
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 58.6 bits (140), Expect = 3e-10
Identities = 40/227 (17%), Positives = 73/227 (32%), Gaps = 22/227 (9%)
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
R+ GH ++ + +L SAS D + +W + T V S V + + P+
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 215 KDLVLSASGDKSVHIWQAV-------------------INWECLNNDNDSDLDESKEPDE 255
+ V D I+ L+++
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 256 SSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEE 315
I GH+ V++ D ++ + D A L+DV G Q+ TGH+ +
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 316 PHILCVS---SYYSKVSCDLFQRIQHLDCGTSENPIHSVCVFQDIQS 359
+ +C + ++ S D R+ L + I S
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Score = 44.0 bits (102), Expect = 2e-05
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 147 SLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWS 189
L + +GH + V + V + + S D +++W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.9 bits (94), Expect = 1e-04
Identities = 15/96 (15%), Positives = 32/96 (33%)
Query: 243 NDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVET 302
+ + + D + L GH + A W +D +++AS D ++D T
Sbjct: 27 DATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT 86
Query: 303 GTILQSLTGHDEEPHILCVSSYYSKVSCDLFQRIQH 338
+ ++ + + V+C I
Sbjct: 87 TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Score = 37.0 bits (84), Expect = 0.002
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 194 KCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQA 232
+ GH + ++ + + L++SAS D + IW +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS 84
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 71.0 bits (172), Expect = 2e-14
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 1/81 (1%)
Query: 151 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 210
H V + S D + W T G + Q S SV S
Sbjct: 255 KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCD 313
Query: 211 FLPNKDLVLSASGDKSVHIWQ 231
+ +++ SGDK +++
Sbjct: 314 ISVDDKYIVTGSGDKKATVYE 334
Score = 52.1 bits (123), Expect = 4e-08
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 6/85 (7%)
Query: 159 GHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC-----VLQYSGHSGSVNSVRFLP 213
H + V V + + + V++W L + S + LP
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 214 NKDLVLSASGDKSVHIWQAVINWEC 238
+ ++ ++ IW
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPR 132
Score = 49.8 bits (117), Expect = 2e-07
Identities = 20/150 (13%), Positives = 42/150 (28%), Gaps = 28/150 (18%)
Query: 151 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 210
+ ++ + P L V + Q H V S++
Sbjct: 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLK 272
Query: 211 FLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGH 270
F +S D ++ W+ +
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWR-TPYGASI--------------------------FQSKE 305
Query: 271 SNVVIAADWLSDGEQVITASWDRVANLFDV 300
S+ V++ D D + ++T S D+ A +++V
Sbjct: 306 SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 37.1 bits (84), Expect = 0.003
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 268 LGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSS 323
L H VV A + V T ++D+ ++ D + S
Sbjct: 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRS 102
Score = 36.7 bits (83), Expect = 0.003
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVS 322
H + V++ + G+ ++ D + N + G + +L
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS---VLSCD 313
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 70.6 bits (171), Expect = 4e-14
Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 21/174 (12%)
Query: 160 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQY-------SGHSGSVNSVRFL 212
+ + S DR VR+W ++TG V + +GH SV SV F
Sbjct: 204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 263
Query: 213 PNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHSN 272
+ V+S S D+SV +W + + + D + T +GH +
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQ--------------NANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 273 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
V++ + E +++ S DR +D ++G L L GH + V++ S
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS 363
Score = 69.4 bits (168), Expect = 1e-13
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 150 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
S ++ GH+D V VA + S S DR V W ++G +L GH SV SV
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 356
Query: 210 ------RFLPNKDLVLSASGDKSVHIWQ 231
P ++ + SGD IW+
Sbjct: 357 AVANGSSLGPEYNVFATGSGDCKARIWK 384
Score = 66.7 bits (161), Expect = 8e-13
Identities = 40/167 (23%), Positives = 59/167 (35%), Gaps = 44/167 (26%)
Query: 153 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGK------------CVLQYS 200
+ S +GH+D V+ V + S S DR+V+LW+ Q C + Y
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305
Query: 201 GHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITL 260
GH V SV N + +LS S D+ V W D
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFW---------------DKKSGN--------- 341
Query: 261 RTPVKELLGHSNVVIAADWLS------DGEQVITASWDRVANLFDVE 301
P+ L GH N VI+ + + T S D A ++ +
Sbjct: 342 --PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
Score = 47.1 bits (110), Expect = 2e-06
Identities = 12/124 (9%), Positives = 42/124 (33%), Gaps = 13/124 (10%)
Query: 172 GQPVLGSASADRTVRLWSTQTGKC----VLQYSGHSGSVNSVRFLPNKDLVLSASGDKSV 227
P + L++ + + + H+ V V+F + + + + +K+
Sbjct: 27 SVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTT 85
Query: 228 HIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVI 287
+++ V + + +D + ++ + + + + DG+ +
Sbjct: 86 QVYR-VSDGSLVARLSDDSAANKDPENLNTSSSP-------SSDLYIRSVCFSPDGKFLA 137
Query: 288 TASW 291
T +
Sbjct: 138 TGAE 141
Score = 44.4 bits (103), Expect = 1e-05
Identities = 38/221 (17%), Positives = 78/221 (35%), Gaps = 20/221 (9%)
Query: 130 TNKLKVQTSKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWS 189
K ++ + + + GH ++ + P L S S DRTVR+W
Sbjct: 132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191
Query: 190 TQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDE 249
+TG+C L S G + + + S D++V +W + +
Sbjct: 192 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV----------- 240
Query: 250 SKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSL 309
L + + GH + V + + DG+ V++ S DR L++++
Sbjct: 241 --------ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292
Query: 310 TGHDEEPHILCVSSYYSKV-SCDLFQRIQHLDCGTSENPIH 349
+ + + V S Q +++ G+ + +
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333
Score = 35.2 bits (79), Expect = 0.011
Identities = 11/54 (20%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 259 TLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
+ + + L H++VV + +DGE + T ++ ++ V G+++ L+
Sbjct: 50 EIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDD 102
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 66.0 bits (159), Expect = 1e-12
Identities = 39/182 (21%), Positives = 62/182 (34%), Gaps = 11/182 (6%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+ GH D V G + S S D T+++WS TGKC+ GH+G V S +
Sbjct: 9 PKVLKGHDDHVITCLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67
Query: 214 NKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHSN- 272
N + S V + L + R +
Sbjct: 68 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG 127
Query: 273 ---------VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSS 323
V DG +V++ ++D + ++D ET T L +L GH + L
Sbjct: 128 QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG 187
Query: 324 YY 325
+
Sbjct: 188 IH 189
Score = 56.4 bits (134), Expect = 2e-09
Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 29/173 (16%)
Query: 151 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 210
+ + GH + V+ + V S S D ++R+W +TG C+ +GH + +
Sbjct: 167 ETCLHTLQGHTNRVYSLQFDGIHVV--SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224
Query: 211 FLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGH 270
++++S + D +V IW +
Sbjct: 225 L--KDNILVSGNADSTVKIWDIKTGQCLQTLQGP-------------------------N 257
Query: 271 SNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSS 323
+ + VIT+S D L+D++TG +++L + V
Sbjct: 258 KHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310
Score = 51.0 bits (120), Expect = 8e-08
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 151 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCV-----LQYSGHSGS 205
++ + H+ V + + ++S D TV+LW +TG+ + L+ G G
Sbjct: 250 LQTLQGPNKHQSAVTCLQFNKNFVI--TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307
Query: 206 VNSVRFLPNKDLVLSASGDKS----VHIW 230
V +R K + S + + + +
Sbjct: 308 VWRIRASNTKLVCAVGSRNGTEETKLLVL 336
Score = 48.7 bits (114), Expect = 5e-07
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 1/91 (1%)
Query: 262 TPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCV 321
K L GH + VI G ++++ S D ++ TG L++L GH +
Sbjct: 7 KSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM 65
Query: 322 SSYYSKVSCDLFQRIQHLDCGTSENPIHSVC 352
Sbjct: 66 RDNIIISGSTDRTLKVWNAETGECIHTLYGH 96
Score = 45.2 bits (105), Expect = 7e-06
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 188 WSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECL 239
W K GH V + + ++S S D ++ +W + +CL
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWS-AVTGKCL 50
Score = 34.8 bits (78), Expect = 0.013
Identities = 38/191 (19%), Positives = 64/191 (33%), Gaps = 16/191 (8%)
Query: 147 SLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSV 206
S ++ +R+ GH GVW +R + GS V T GH+ +V
Sbjct: 43 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIH--TLYGHTSTV 100
Query: 207 NSVRFLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDE----------- 255
+ + + S V + L + +
Sbjct: 101 RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 160
Query: 256 -SSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE 314
T + L GH+N V + + DG V++ S D ++DVETG + +LTGH
Sbjct: 161 VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 218
Query: 315 EPHILCVSSYY 325
+ +
Sbjct: 219 LTSGMELKDNI 229
Score = 31.3 bits (69), Expect = 0.18
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 4/45 (8%)
Query: 148 LLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRT----VRLW 188
+ G VW + + V S + T + +
Sbjct: 292 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 65.6 bits (158), Expect = 2e-12
Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 158 SGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVL--QYSGHSGSVNSVRFLPNK 215
S + + A + + + V ++ K V + H+G V V + P+
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63
Query: 216 DLVLSASGDKSVHIWQAVINWEC 238
+ +++ D++ ++W
Sbjct: 64 NRIVTCGTDRNAYVWTLKGRTWK 86
Score = 46.4 bits (108), Expect = 3e-06
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 24/101 (23%)
Query: 199 YSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSI 258
+S ++ + ++ + + VHI+ + +K
Sbjct: 3 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIY---------------EKSGNK------- 40
Query: 259 TLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFD 299
V EL H+ V DW D +++T DR A ++
Sbjct: 41 --WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79
Score = 45.2 bits (105), Expect = 7e-06
Identities = 29/234 (12%), Positives = 64/234 (27%), Gaps = 18/234 (7%)
Query: 88 RESIINEKYPECNDMECVTNMNKNFNKQKVLASNPSAQKLKTTNKLKVQTSKIVSSFKTS 147
+ + + + ++ + S ++ + +V+ + + +
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187
Query: 148 LLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVN 207
+ + S V V + S D TV L V + + +
Sbjct: 188 MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 247
Query: 208 SVRFLPNKDLVLSASGDKSVHIWQAVINWECL-----------NNDNDSDLDESKEPD-- 254
+V F+ LV + V + + + + + D
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307
Query: 255 -ESSITLRTPVKELLGHSNVVIAADWLSDGE----QVITASWDRVANLFDVETG 303
S + H N V LS G+ Q T D +++DV +
Sbjct: 308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361
Score = 40.6 bits (93), Expect = 2e-04
Identities = 9/65 (13%), Positives = 19/65 (29%)
Query: 138 SKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVL 197
+ V ++ S ++ H V V P + + DR +W+ +
Sbjct: 28 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 87
Query: 198 QYSGH 202
Sbjct: 88 TLVIL 92
Score = 34.4 bits (77), Expect = 0.017
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 154 IRSFSGHRDGVWDVAVRPGQP----VLGSASADRTVRLWSTQTGKCVLQ 198
S H++ V ++V G + D + +W ++ + L+
Sbjct: 318 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 366
Score = 34.4 bits (77), Expect = 0.017
Identities = 5/51 (9%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 274 VIAADWLSDGEQVITASWDRVANLFDVETGTI--LQSLTGHDEEPHILCVS 322
+ W D Q+ + ++++ + L H+ + + +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Score = 31.4 bits (69), Expect = 0.18
Identities = 29/246 (11%), Positives = 63/246 (25%), Gaps = 54/246 (21%)
Query: 141 VSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGK------ 194
+ F+ R V + P +L + S D R++S +
Sbjct: 121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180
Query: 195 ------------CVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLNND 242
+ + S G V+ V F N V S D +V + A
Sbjct: 181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240
Query: 243 NDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVET 302
+ + ++A ++++ V LF ++
Sbjct: 241 S--------------------------ETLPLLAVTFITESSLVAAGHDCFP-VLFTYDS 273
Query: 303 GTILQSLTGHDEEPHILCVSSYYSKVSCDLFQRIQHLDCGTS---------ENPIHSVCV 353
S G + P ++ + + + +N + + V
Sbjct: 274 AAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISV 333
Query: 354 FQDIQS 359
++
Sbjct: 334 LSGGKA 339
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 63.3 bits (152), Expect = 8e-12
Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC---VLQYSGHSGSVNSVR 210
++ +D + D+ + P + +L S D ++ ++ +LQ + +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 211 FLPNKDLVLSASGDKSVHIWQAVINWEC 238
F+ N DL + + + +I
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPS 91
Score = 58.3 bits (139), Expect = 3e-10
Identities = 22/159 (13%), Positives = 52/159 (32%), Gaps = 1/159 (0%)
Query: 95 KYPECNDMECVTNMNKNFNKQKVLASNPSAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKI 154
E + ++ K++ + S Q SS + +
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 155 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
+ V + P L +A +D + W+ QT K + ++ + V+ +
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACS 303
Query: 215 KDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEP 253
+++ A+ D + A+ LN + + + + P
Sbjct: 304 DNILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYENP 342
Score = 47.9 bits (112), Expect = 8e-07
Identities = 9/93 (9%), Positives = 30/93 (32%), Gaps = 23/93 (24%)
Query: 200 SGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSIT 259
++ ++ +P+K L+L S D S+ ++
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVY-----------------------KFDIQA 44
Query: 260 LRTPVKELLGHSNVVIAADWLSDGEQVITASWD 292
+ + L + + ++ +++ + + I
Sbjct: 45 KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77
Score = 38.7 bits (88), Expect = 8e-04
Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 269 GHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPH-ILCVS 322
+ + + ++ SWD ++ + L H +LC +
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Score = 38.7 bits (88), Expect = 8e-04
Identities = 13/146 (8%), Positives = 48/146 (32%), Gaps = 16/146 (10%)
Query: 181 ADRTVRLWSTQTGKCVLQYSGHSGS----VNSVRFLPNKDLVLSASGDKSVHIWQAVINW 236
+ V+ + + SG + ++ +S D V +
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227
Query: 237 ECLNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVAN 296
+ N+ + + + + V + ++ + + TA D + +
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDT-----------NLAYPVNSIEFSPRHKFLYTAGSDGIIS 276
Query: 297 LFDVETGTILQSLTGHDEEPHILCVS 322
++++T +++ +E+ ++ ++
Sbjct: 277 CWNLQTRKKIKNFAKFNEDS-VVKIA 301
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 62.6 bits (150), Expect = 2e-11
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 153 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFL 212
+ + GH V + + + D+ +R++ + K +LQ SGH G V ++++
Sbjct: 4 QRTTLRGHMTSVITCLQFEDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62
Query: 213 PNKDLVLSASGDKSVHIWQAVINWEC 238
LV ++
Sbjct: 63 HGGILVSGSTDRTVRVWDIKKGCCTH 88
Score = 56.8 bits (135), Expect = 1e-09
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 151 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSV 209
R FS H + + + + ++ +++ ++GK V + + SV
Sbjct: 271 NDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSV 330
Query: 210 RFLPNKDLVLSASGDKSVHIW 230
F LV + D +
Sbjct: 331 NFKGKT-LVAAVEKDGQSFLE 350
Score = 48.0 bits (112), Expect = 8e-07
Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 267 LLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYS 326
L GH VI + VIT + D++ ++D L L+GHD L +
Sbjct: 8 LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66
Query: 327 KVSCDLFQRIQHLDCGTSENPIHSVCVFQ 355
VS + ++ D
Sbjct: 67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNS 95
Score = 35.3 bits (79), Expect = 0.011
Identities = 28/185 (15%), Positives = 65/185 (35%), Gaps = 17/185 (9%)
Query: 151 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 210
Y + GH V V+ V GS D T+ +W KC+ SGH+ + S
Sbjct: 151 PYFVGVLRGHMASVRTVSGHGNIVVSGSY--DNTLIVWDVAQMKCLYILSGHTDRIYSTI 208
Query: 211 FLPNKDLVLSASGDKSV------------HIWQAVINWECLNNDNDSDLDESKEPDESSI 258
+ + +SAS D ++ + L + + + +
Sbjct: 209 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 268
Query: 259 TLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQS-LTGHDEEPH 317
++ H + A + ++ + + N++++ +G ++ + + ++
Sbjct: 269 DANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQ-- 326
Query: 318 ILCVS 322
I V+
Sbjct: 327 IWSVN 331
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 60.7 bits (145), Expect = 5e-11
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 151 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSG-SVNSV 209
H V+ + P + SASAD+T+++W+ T K + +
Sbjct: 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 287
Query: 210 RFLPNKDLVLSASGDKSVHIW 230
+ K ++S S + ++
Sbjct: 288 GIIWTKQALVSISANGFINFV 308
Score = 53.8 bits (127), Expect = 9e-09
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 1/78 (1%)
Query: 161 RDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLS 220
R + P + + +V + Y+ HS + P+ S
Sbjct: 17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75
Query: 221 ASGDKSVHIWQAVINWEC 238
+V IW
Sbjct: 76 GDVHGNVRIWDTTQTTHI 93
Score = 39.5 bits (90), Expect = 4e-04
Identities = 10/87 (11%), Positives = 20/87 (22%), Gaps = 2/87 (2%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTG--KCVLQYSGHSGSVNSVRF 211
++ H P S VR+W T SG V + +
Sbjct: 51 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW 110
Query: 212 LPNKDLVLSASGDKSVHIWQAVINWEC 238
+ + + + +
Sbjct: 111 DSESKRIAAVGEGRERFGHVFLFDTGT 137
Score = 36.8 bits (83), Expect = 0.003
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 278 DWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDE-EPHILCVS 322
W DG ++ +AS D+ +++V T + +++ E L +
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 290
Score = 34.1 bits (76), Expect = 0.020
Identities = 17/155 (10%), Positives = 30/155 (19%), Gaps = 37/155 (23%)
Query: 204 GSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTP 263
G+ + P D + +G SV+ + T
Sbjct: 18 GTAVVLGNTPAGDKIQYCNGT-SVYTV--------------------------PVGSLTD 50
Query: 264 VKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSS 323
+ HS+ A G + G + T +
Sbjct: 51 TEIYTEHSHQTTVAKTSPSGYYCASGDVH----------GNVRIWDTTQTTHILKTTIPV 100
Query: 324 YYSKVSCDLFQRIQHLDCGTSENPIHSVCVFQDIQ 358
+ V + E VF
Sbjct: 101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135
Score = 34.1 bits (76), Expect = 0.021
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 27/115 (23%)
Query: 188 WSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDL 247
+ L+ HSGSV + + P+ + SAS DK++ IW ++
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW---------------NV 267
Query: 248 DESKEPDESSITLRTPVKELLGHSNVVIAA-DWLSDGEQVITASWDRVANLFDVE 301
K K + + + + + +++ S + N + E
Sbjct: 268 ATLK-----------VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 58.7 bits (140), Expect = 2e-10
Identities = 36/188 (19%), Positives = 68/188 (36%), Gaps = 19/188 (10%)
Query: 153 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFL 212
+I S GV+ ++ + S D T+++W T +C +GH+GSV +++
Sbjct: 7 RIHCRSETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 213 PNKDLVLSASGD---------------KSVHIWQAVINWECLNNDNDSDLDESKEPDESS 257
+ S+ + + S D +S
Sbjct: 65 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 258 ITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPH 317
T T + L+GH V D+ D + +++AS DR +++ T +++L GH
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 182
Query: 318 ILCVSSYY 325
L
Sbjct: 183 CLQYRDRL 190
Score = 53.7 bits (127), Expect = 1e-08
Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 23/150 (15%)
Query: 150 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 209
+C +R+ +GH+ G+ + R + S S+D T+RLW + G C+ GH V +
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 224
Query: 210 RFLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLG 269
RF + ++S + D + +W D D + ++ L+
Sbjct: 225 RFDNKR--IVSGAYDGKIKVW-----------------DLVAALDPRAPAGTLCLRTLVE 265
Query: 270 HSNVVIAADWLSDGEQVITASWDRVANLFD 299
HS V + D Q++++S D ++D
Sbjct: 266 HSGRVFRLQF--DEFQIVSSSHDDTILIWD 293
Score = 41.4 bits (95), Expect = 8e-05
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 1/79 (1%)
Query: 261 RTPVKELLGHSNVVIAADWLS-DGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHIL 319
R ++ + S L D +++++ D ++D T + LTGH L
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61
Query: 320 CVSSYYSKVSCDLFQRIQH 338
Sbjct: 62 QYDERVIITGSSDSTVRVW 80
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 59.0 bits (141), Expect = 2e-10
Identities = 15/171 (8%), Positives = 42/171 (24%), Gaps = 11/171 (6%)
Query: 157 FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVL--QYSGHSGSVNSVRFLPN 214
+ A L + + +G + + + + P
Sbjct: 190 HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG 249
Query: 215 KDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVV 274
++ I D S+ + + +
Sbjct: 250 GWQQVAYHRALDR------IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEID 303
Query: 275 IAADWLSDGEQ--VITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSS 323
+ + D + ++ D+ + D E+G L+S+ P ++ +
Sbjct: 304 -SINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353
Score = 38.2 bits (87), Expect = 0.001
Identities = 6/57 (10%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 160 HRDGVWDVAVRP-GQPVL-GSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 214
+ + V +P+L ++ D+T+ + ++G+ + + +
Sbjct: 298 MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354
Score = 35.2 bits (79), Expect = 0.011
Identities = 18/155 (11%), Positives = 39/155 (25%), Gaps = 9/155 (5%)
Query: 177 GSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINW 236
+A + + G+ + G G + + + + AS S ++
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMIDG--GFLPNPVVADDGSFIAHASTVFSRIARGERTDY 79
Query: 237 ECLNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVAN 296
+ D + I L + L+G + + S
Sbjct: 80 VEV-----FDPVTLLPTAD--IELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVG 132
Query: 297 LFDVETGTILQSLTGHDEEPHILCVSSYYSKVSCD 331
+ D+E + L D + D
Sbjct: 133 VVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRD 167
Score = 32.5 bits (72), Expect = 0.081
Identities = 13/147 (8%), Positives = 27/147 (18%), Gaps = 11/147 (7%)
Query: 162 DGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSA 221
DG + + V ++ T V P L+
Sbjct: 57 DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW-MTSLTP 115
Query: 222 SGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADWLS 281
G + + + + L P + +
Sbjct: 116 DGKTLLFYQFSPAPAVGVVDLEG---------KAFKRMLDVPDCYHIFPTAPDTFFMHCR 166
Query: 282 DGEQ-VITASWDRVANLFDVETGTILQ 307
DG + + + E
Sbjct: 167 DGSLAKVAFGTEGTPEITHTEVFHPED 193
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 58.5 bits (139), Expect = 3e-10
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYS-GHSGSVNSVRFL 212
+ GH + ++ L SA A+ + W TG + H+ + ++
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 213 PNKDLVLSASGDKSVHIW 230
DL + D +
Sbjct: 65 SKGDLFTVSWDDHLKVVP 82
Score = 51.5 bits (121), Expect = 5e-08
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 151 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC--VLQYSGHSGSVNS 208
S++ H V V+ P L + S D +V +W+ ++ H+ S +
Sbjct: 214 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN 273
Query: 209 VRFLPNKDLVLSASGDKSVHIW 230
N+ ++SA D ++ W
Sbjct: 274 SVIWLNETTIVSAGQDSNIKFW 295
Score = 47.3 bits (110), Expect = 1e-06
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 264 VKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLT-GHDEEPHILCVS 322
+ GH+ + A +DG+ + +A + N +D+ TG + H + +
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 323 SYYSKVSCDLFQRIQHLDCGTSENPIHSVCVFQ 355
S + ++ + G S +
Sbjct: 65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANK 97
Score = 46.1 bits (107), Expect = 3e-06
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 193 GKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQA 232
G GH+ ++ ++ + + SA + ++ W
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 41
Score = 35.0 bits (78), Expect = 0.012
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 150 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWS 189
S + I H + + + + SA D ++ W+
Sbjct: 257 SDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 34.2 bits (76), Expect = 0.022
Identities = 11/88 (12%), Positives = 30/88 (34%), Gaps = 24/88 (27%)
Query: 213 PNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHSN 272
P+ + + S D SV +W ++++ + P+ H+
Sbjct: 234 PDNVRLATGSLDNSVIVW---------------NMNKPSDH---------PIIIKGAHAM 269
Query: 273 VVIAADWLSDGEQVITASWDRVANLFDV 300
+ + + +++A D ++V
Sbjct: 270 SSVNSVIWLNETTIVSAGQDSNIKFWNV 297
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 58.0 bits (138), Expect = 3e-10
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 151 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQT-GKCVLQYSGHSGSVNSV 209
KI + S + ++ + S D + ++S + K + + H VN++
Sbjct: 205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL 264
Query: 210 RFLPNKDLVLSASGDKSVHIWQAV 233
+ LV S+ D + W V
Sbjct: 265 LWETPSTLV-SSGADACIKRWNVV 287
Score = 56.5 bits (134), Expect = 1e-09
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 9/85 (10%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 213
+++ SGH G+ + V P L S S D + WS+ + HS + S+
Sbjct: 6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSK 56
Query: 214 NKDLVLSASGDKSVHIWQAVINWEC 238
++ + D +
Sbjct: 57 AQEYSSISWDDTLKVNGITKHEFGS 81
Score = 37.2 bits (84), Expect = 0.002
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 192 TGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 230
+ + SGH+ + ++ P ++S S D + W
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEW 36
Score = 36.1 bits (81), Expect = 0.005
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 26/113 (23%)
Query: 188 WSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDL 247
+ S + +DLV + S D ++ I+ +
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY---------------SV 244
Query: 248 DESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDV 300
+ +K L H + V W + ++++ D ++V
Sbjct: 245 KRPMKI----------IKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286
Score = 33.4 bits (74), Expect = 0.038
Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 9/92 (9%)
Query: 263 PVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVS 322
+K + GH+ + A +I+ S+D + + H L S
Sbjct: 5 VLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNS 55
Query: 323 SYYSKVSCDLFQRIQHLDCGTSENPIHSVCVF 354
S ++ E
Sbjct: 56 KAQEYSSISWDDTLKVNGITKHEFGSQPKVAS 87
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 56.4 bits (134), Expect = 2e-09
Identities = 20/219 (9%), Positives = 55/219 (25%), Gaps = 32/219 (14%)
Query: 159 GHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC------VLQYSGHSGSVNSVRFL 212
H ++ V+ V S S D +++W + + H ++ V L
Sbjct: 12 AHDADIFSVSACNSFTV--SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 213 -------PNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVK 265
LV + S + + + + K E L + +K
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFY-----------RITREDETKKVIFEKLDLLDSDMK 118
Query: 266 ELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPH------IL 319
+ + A++ +++ ++ + + P +
Sbjct: 119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE 178
Query: 320 CVSSYYSKVSCDLFQRIQHLDCGTSENPIHSVCVFQDIQ 358
+ + + G + + +
Sbjct: 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRP 217
Score = 51.4 bits (121), Expect = 7e-08
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 5/111 (4%)
Query: 139 KIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQ 198
+ + S S H V ++ L SA D +R W +T + +
Sbjct: 267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT 326
Query: 199 YSGHSGSV----NSVRFLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDS 245
+ H + + + + D + G V + + N+S
Sbjct: 327 LNMHCDDIEIEEDILAVDEHGDSLAEP-GVFDVKFLKKGWRSGMGADLNES 376
Score = 49.1 bits (115), Expect = 4e-07
Identities = 32/250 (12%), Positives = 82/250 (32%), Gaps = 17/250 (6%)
Query: 72 NLNLQDKIDMLMEKLDRESIINEKYPECNDMECVTNMNKNFNKQKVLASNPSAQKLKTTN 131
+ +D+ ++ + + K ++ + ++ + + V + +
Sbjct: 95 RITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 154
Query: 132 KLKVQTSKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWS-- 189
+++ + ++ +L + S V + ++ + + TV++
Sbjct: 155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS 213
Query: 190 ----TQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDS 245
+ +S S+ SV+F P L+ A S + S
Sbjct: 214 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS 273
Query: 246 DLDESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTI 305
S + HS+ V++ + GE + +A WD +DV+T
Sbjct: 274 VPTHSSQA----------SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 323
Query: 306 LQSLTGHDEE 315
+ +L H ++
Sbjct: 324 ITTLNMHCDD 333
Score = 43.7 bits (101), Expect = 2e-05
Identities = 22/228 (9%), Positives = 63/228 (27%), Gaps = 37/228 (16%)
Query: 153 KIRSFSGHRDGVWDVAVRPGQP-------VLGSASADRTVRLWSTQTGKC---------- 195
K S H+ G+ V V ++ + S + +
Sbjct: 52 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD 111
Query: 196 VLQYSGHSGSVNSVRFLPNKD-----LVLSASGDKSVHIWQAVINWECLNNDNDSDLDES 250
+L S ++++ + D +++ + +IW+ + N+ +
Sbjct: 112 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN----- 166
Query: 251 KEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLT 310
++ L+ V+ + S + D G + T + + ++ T
Sbjct: 167 ---WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP----- 217
Query: 311 GHDEEPHILCVSSYYSKVSCDLFQRIQHLDCGTSENPIHSVCVFQDIQ 358
+ + + + F L ++ + +
Sbjct: 218 -LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 264
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 54.5 bits (129), Expect = 7e-09
Identities = 16/187 (8%), Positives = 44/187 (23%), Gaps = 26/187 (13%)
Query: 149 LSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC-------VLQYSG 201
+ KI + + + A L S
Sbjct: 166 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL 225
Query: 202 HSGSVNSVRFLPNKDLVLSASGDKSVHIWQ-------------------AVINWECLNND 242
GS N + +P + D + + +++ + +
Sbjct: 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285
Query: 243 NDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVET 302
+ + + +++ N + +D + V+ D F +E
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345
Query: 303 GTILQSL 309
+++
Sbjct: 346 PEDERTV 352
Score = 29.8 bits (65), Expect = 0.48
Identities = 7/90 (7%), Positives = 16/90 (17%), Gaps = 3/90 (3%)
Query: 268 LGHSNVVIAADWLSDGEQVITASWDRVANLF--DVETGTILQSLTGHDEEPHILCVSSYY 325
+ + D + L D TG + + + V
Sbjct: 39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNG 97
Query: 326 SKVSCDLFQRIQHLDCGTSENPIHSVCVFQ 355
+ + P +
Sbjct: 98 KFAVVANDRFEIMTVDLETGKPTVIERSRE 127
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 54.2 bits (128), Expect = 7e-09
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 176 LGSASADRTVRLWSTQTGKCVLQYSGHSGSV--NSVRFLPNKD-LVLSASGDKSVHIW 230
+ AD T+R+W T KCV +++ + V + + ++S S D +++ +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Score = 43.0 bits (99), Expect = 3e-05
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 158 SGHRDGVWDVAVRPGQPVLGSASADRT-VRLW--STQTGKCVLQYSGHSGS-VNSVRFLP 213
S R+ ++ P + VR V+Q++GH S V +V+F P
Sbjct: 14 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73
Query: 214 NKD--LVLSASGDKSVHIWQAVINWEC 238
K + S V +W + E
Sbjct: 74 IKGSQYLCSGDESGKVIVWGWTFDKES 100
Score = 38.4 bits (87), Expect = 8e-04
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 279 WLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYSK 327
D ++ T D ++DV T +Q T ++ V +
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG 307
Score = 37.6 bits (85), Expect = 0.002
Identities = 16/132 (12%), Positives = 33/132 (25%), Gaps = 15/132 (11%)
Query: 118 LASNPSAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKIRSFSGHR-DGVWDVAVRPGQP-- 174
L+ +P+ + S V + F+GH V V P +
Sbjct: 23 LSYDPTTNAIAYPC----GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78
Query: 175 VLGSASADRTVRLWSTQTGKCVLQ--------YSGHSGSVNSVRFLPNKDLVLSASGDKS 226
L S V +W K + +G ++ + + + +
Sbjct: 79 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138
Query: 227 VHIWQAVINWEC 238
+
Sbjct: 139 NFGVFISWDSGN 150
Score = 31.4 bits (69), Expect = 0.15
Identities = 6/38 (15%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 154 IRSFSGHRDGVWDVAVR---PGQPVLGSASADRTVRLW 188
++ ++ + + + V G + S S D T+ +
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Score = 30.7 bits (67), Expect = 0.28
Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 26/121 (21%)
Query: 200 SGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSIT 259
S + + P + + G + V D +SK P
Sbjct: 14 STQRNFTTHLSYDPTTNAIAYPCGKSAF-----VRCL---------DDGDSKVP------ 53
Query: 260 LRTPVKELLGH-SNVVIAADW--LSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEP 316
PV + GH S+VV + + + + + ++ S+ + +
Sbjct: 54 ---PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE 110
Query: 317 H 317
Sbjct: 111 F 111
Score = 29.5 bits (64), Expect = 0.55
Identities = 8/91 (8%), Positives = 24/91 (26%), Gaps = 29/91 (31%)
Query: 213 PNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHSN 272
+ + D ++ +W +T V++
Sbjct: 261 LDSQKFATVGADATIRVW--------------------------DVTTSKCVQKWTLDKQ 294
Query: 273 VVIAADW---LSDGEQVITASWDRVANLFDV 300
+ + ++I+ S D N +++
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 51.5 bits (122), Expect = 5e-08
Identities = 15/169 (8%), Positives = 42/169 (24%), Gaps = 9/169 (5%)
Query: 157 FSGHRDGVWDVAVRPGQPVLG---SASADRTVRLWSTQTGK--CVLQYSGHSGSVNSVRF 211
D D A G + VR K +S + + + +
Sbjct: 156 SDAFIDVDKDPAFVNASRYKGDYLFTTYGGNVRSADFSGDKPAFGKPWSLLTDAERAEGW 215
Query: 212 LPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHS 271
P + ++ + + + D + + + + ++ +
Sbjct: 216 RPGGMQQTAVQAKQNRYYVLMHKGTDGSHKDPGTQVWVYDLKSKQRVARWDLAQQKVEP- 274
Query: 272 NVVIAADWLSDGEQVITASWDRVAN-LFDVETGTILQSLTGHDEEPHIL 319
+++ D + + + D TG + +L
Sbjct: 275 --LVSIQVSEDDKPLFYGLTATSDLVVMDARTGALQHVEKQIGNTSSLL 321
Score = 38.0 bits (87), Expect = 0.001
Identities = 6/89 (6%), Positives = 17/89 (19%), Gaps = 20/89 (22%)
Query: 154 IRSFSGHRDGVWDVAVR----------PGQPVLGSASADRTVRLWSTQTGKCVLQYSGHS 203
++ + + PG V + + V
Sbjct: 220 MQQTAVQAKQNRYYVLMHKGTDGSHKDPGTQVWVYDLKSKQRVARWDLAQQKV------- 272
Query: 204 GSVNSVRFLP--NKDLVLSASGDKSVHIW 230
+ S++ + V +
Sbjct: 273 EPLVSIQVSEDDKPLFYGLTATSDLV-VM 300
Score = 37.3 bits (85), Expect = 0.002
Identities = 11/150 (7%), Positives = 25/150 (16%), Gaps = 28/150 (18%)
Query: 162 DGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSA 221
D V + V + T + + +A
Sbjct: 27 DRKASVVATTYFSRGSHGTRTDVVEIIDNTTLDHAGEIVIPAKHA-----QHVPSPYNTA 81
Query: 222 SGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHS--NVVIAADW 279
++ A ++ S +
Sbjct: 82 FSADGKRLYVA-------------------NITPAASVTVIDAVSKKMLSEIDTAACVLA 122
Query: 280 LSDGEQVITASW--DRVANLFDVETGTILQ 307
G+ TA + + G +
Sbjct: 123 YPAGDDRFTALCESGKALTVTLDANGKEAK 152
Score = 28.0 bits (61), Expect = 1.9
Identities = 7/72 (9%), Positives = 18/72 (25%), Gaps = 8/72 (11%)
Query: 261 RTPVKELLGHS--NVVIAAD------WLSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
+ + ++ G IA D + + + V + D T +
Sbjct: 8 KKLLGQIDGGFGPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTLDHAGEIVIP 67
Query: 313 DEEPHILCVSSY 324
+ +
Sbjct: 68 AKHAQHVPSPYN 79
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 49.2 bits (116), Expect = 3e-07
Identities = 15/190 (7%), Positives = 48/190 (25%), Gaps = 11/190 (5%)
Query: 136 QTSKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC 195
+ + + + ++ + ++
Sbjct: 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATM 245
Query: 196 VLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDE 255
G+ + F +++ + + + S L ++
Sbjct: 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI-------LTVEHSRSCLAAAENTSS 298
Query: 256 SSITLRTPVKELLGHSNVVIAADWLSDGEQVITASW--DRVANLFDVETGTILQSLTGHD 313
+ ++ + + + A DG A+ V +++D + S+ D
Sbjct: 299 VTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL-D 356
Query: 314 EEPHILCVSS 323
+ P L V +
Sbjct: 357 KGPESLSVQN 366
Score = 40.3 bits (93), Expect = 2e-04
Identities = 15/178 (8%), Positives = 32/178 (17%), Gaps = 27/178 (15%)
Query: 162 DGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP-------- 213
G V ++ T + SV
Sbjct: 75 SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134
Query: 214 NKDLVLSASGDKSVHIW-------QAVINWEC------------LNNDNDSDLDESKEPD 254
+ L+ G + + + L S
Sbjct: 135 SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA 194
Query: 255 ESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGH 312
+ + + AA G V + + T+ ++ G+
Sbjct: 195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGN 252
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 46.7 bits (110), Expect = 2e-06
Identities = 21/166 (12%), Positives = 40/166 (24%), Gaps = 36/166 (21%)
Query: 165 WDVAV----RPGQPVLG---------SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRF 211
W V V RP Q + + + L T + V+ R
Sbjct: 11 WKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRL 69
Query: 212 LPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHS 271
+ + D V++ DL E + +
Sbjct: 70 SASGRYLFVIGRDGKVNMI---------------DLW----MKEPTTVAEIKI--GSEAR 108
Query: 272 NVVIAADWLSDGEQVI-TASWDRVANLFDVETGTILQSLTGHDEEP 316
++ + + + I A W + D ET + +
Sbjct: 109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY 154
Score = 39.4 bits (91), Expect = 5e-04
Identities = 14/188 (7%), Positives = 35/188 (18%), Gaps = 10/188 (5%)
Query: 154 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC-----VLQYSGHSGSVNS 208
V + L D V + + + S S
Sbjct: 55 KTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113
Query: 209 VRFLPN-KDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKEL 267
K + A I + +E R
Sbjct: 114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP---RVAAILA 170
Query: 268 LGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYSK 327
+ I + ++ + ++ L + + ++ +K
Sbjct: 171 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 230
Query: 328 VSCDLFQR 335
+ +
Sbjct: 231 LVVIDTKE 238
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 46.7 bits (109), Expect = 2e-06
Identities = 10/161 (6%), Positives = 37/161 (22%), Gaps = 10/161 (6%)
Query: 167 VAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYS-GHSGSVNSVRFLPN-KDLVLSASGD 224
A++ G + + + + + + P+ + + +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 225 KSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGE 284
++ + + N ++L S+ + V A +
Sbjct: 62 GDIYGI----DLDTCKNTFHANLSSVPGEVGRSMYSFA----ISPDGKEVYATVNPTQRL 113
Query: 285 QVITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYY 325
+F G + + + + +
Sbjct: 114 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD 154
Score = 44.3 bits (103), Expect = 1e-05
Identities = 13/150 (8%), Positives = 35/150 (23%), Gaps = 27/150 (18%)
Query: 164 VWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASG 223
+ + +A +TGK Q + KD
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV 270
Query: 224 DKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADWLSDG 283
+ + DL + K + + + + G
Sbjct: 271 LNRLAKY---------------DLKQRK------------LIKAANLDHTYYCVAFDKKG 303
Query: 284 EQVITASWDRVANLFDVETGTILQSLTGHD 313
+++ +F+ +T ++++
Sbjct: 304 DKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333
Score = 39.0 bits (89), Expect = 5e-04
Identities = 8/64 (12%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 152 YKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCV--LQYSGHSGSVNSV 209
K+ + + VA L + +++ T + V ++ G S +
Sbjct: 282 RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341
Query: 210 RFLP 213
+
Sbjct: 342 QVFI 345
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 43.8 bits (102), Expect = 2e-05
Identities = 12/133 (9%), Positives = 29/133 (21%), Gaps = 22/133 (16%)
Query: 159 GHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLV 218
R + + + L + K V V+ R + +
Sbjct: 18 EDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYL 76
Query: 219 LSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVVIAAD 278
L D + + + T +K + +V +
Sbjct: 77 LVIGRDARIDMI---------------------DLWAKEPTKVAEIKIGIEARSVESSKF 115
Query: 279 WLSDGEQVITASW 291
+ I ++
Sbjct: 116 KGYEDRYTIAGAY 128
Score = 29.2 bits (64), Expect = 0.94
Identities = 9/98 (9%), Positives = 22/98 (22%), Gaps = 21/98 (21%)
Query: 154 IRSFSGHRDGVWDVAVRPGQ-------PVLGSASADRTVRLWSTQTGKCVLQ-------- 198
+ G G + P A ++V ++ + Q
Sbjct: 296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWA 355
Query: 199 -YSGHSGSVNSVRFLPNKDLVL-----SASGDKSVHIW 230
+ V + D V + ++ +
Sbjct: 356 DLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 393
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 41.4 bits (95), Expect = 9e-05
Identities = 8/70 (11%), Positives = 17/70 (24%), Gaps = 2/70 (2%)
Query: 178 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN-KDLVLSASGDKSVHIWQAVINW 236
+ S + + + K S P+ + ++ + V I N
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 237 ECLNNDNDSD 246
S
Sbjct: 66 VIATVPAGSS 75
Score = 38.3 bits (87), Expect = 0.001
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 154 IRSFSGHRDGVWDVAVRP-GQPVLGSASADRTVRLWSTQTGKCV 196
D +AV P G+ V + S TV + T T
Sbjct: 237 TARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279
Score = 33.7 bits (75), Expect = 0.025
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 184 TVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN-KDLVLSASGDKSVHIW 230
TV + T T K + + P+ K + ++ S +V +
Sbjct: 225 TVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVI 271
Score = 30.6 bits (67), Expect = 0.24
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 261 RTPVKELLGHSNVVIAADWLSDGEQV-ITASWDRVANLFDVETGTILQSLTGHDEEPH 317
+ + DG++V + S+ ++ D T TI ++ P+
Sbjct: 234 NKITARIPVGPDPA-GIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGK-NPY 289
Score = 29.5 bits (64), Expect = 0.62
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 2/52 (3%)
Query: 154 IRSFSGHRDGVWDVAVRP-GQPVLGSASADRTVRLWSTQTGKCVLQYSGHSG 204
+ + P G V + + V + T T + S
Sbjct: 25 TATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS 75
Score = 28.3 bits (61), Expect = 1.4
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 287 ITASWDRVANLFDVETGTILQSLTGHDEEPHILCVSSYYSK--VSCDLFQRIQHLDCGTS 344
I S ++ DV + + ++ P +S +K V+ + +D T+
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64
Query: 345 ENPIHSVC 352
Sbjct: 65 NVIATVPA 72
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 39.0 bits (89), Expect = 6e-04
Identities = 20/190 (10%), Positives = 50/190 (26%), Gaps = 16/190 (8%)
Query: 178 SASADRTVRLWSTQTGKCV--LQYSGHSGSVNSVRFLPN-KDLVLSASGDKSVHIWQAVI 234
+ + + + T+ + + + P + + + +S+ V
Sbjct: 6 APARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT 65
Query: 235 NWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRV 294
D + + K ++++ + + E
Sbjct: 66 GETLGRIDLSTPEERVKSLFGAALS---------PDGKTLAIYESPVRLELTHFEVQPTR 116
Query: 295 ANLFDVETGTILQSLTGHDEEPHILCVSSYYSKV---SCDLFQRIQHLDCGTSENPIHSV 351
L+D ET + ++ + +L + SK+ DL + PI S
Sbjct: 117 VALYDAETLSRRKAFEAPR-QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSW 175
Query: 352 CVFQDIQSTG 361
Q
Sbjct: 176 EAETYAQPDV 185
Score = 38.6 bits (88), Expect = 9e-04
Identities = 6/59 (10%), Positives = 14/59 (23%), Gaps = 4/59 (6%)
Query: 159 GHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCV----LQYSGHSGSVNSVRFLP 213
+ V V + A + + +T + L + + F
Sbjct: 277 PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTR 335
Score = 38.2 bits (87), Expect = 0.001
Identities = 11/151 (7%), Positives = 31/151 (20%), Gaps = 28/151 (18%)
Query: 160 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 219
R + + +TG+ ++ +
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255
Query: 220 SASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADW 279
+ + DL+++ + + + + +
Sbjct: 256 -FGAYNVLESF---------------DLEKNA------------SIKRVPLPHSYYSVNV 287
Query: 280 LSDGEQVITASWDRVANLFDVETGTILQSLT 310
+DG V +D ET +
Sbjct: 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVD 318
Score = 35.2 bits (79), Expect = 0.009
Identities = 17/162 (10%), Positives = 44/162 (27%), Gaps = 23/162 (14%)
Query: 158 SGHRDGVWDVAVRP-GQPVLGSASADRTVRLWSTQTGKCVLQYSGHSG-----SVNSVRF 211
+ V P G+ + + ++ TG+ + + + S+
Sbjct: 30 ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL 89
Query: 212 LPNKDLVLSASGDKSVHIWQAVINWECLNNDNDSDLDESKEPDESSITLRTPVKELLGHS 271
P+ + + + D++ ++ E
Sbjct: 90 SPDGKTLAIYESPVRLELTHFE-VQPTRVALYDAETLSRRKAFE--------------AP 134
Query: 272 NVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTGHD 313
+ W DG ++ D ++ D E GT+++
Sbjct: 135 RQITMLAWARDGSKLYGLGRDL--HVMDPEAGTLVEDKPIQS 174
Score = 28.6 bits (62), Expect = 1.2
Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 284 EQVITASWDRVANLFDVETGTILQSLTGHDE--EPHILCVS 322
+ ++ + + D E + + +T D P + V+
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA 42
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 38.5 bits (88), Expect = 8e-04
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 164 VWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASG 223
+ ++A P + + + + ++ G V+ + F N DLV +
Sbjct: 30 LENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWN 87
Query: 224 DKSVHIWQAVINWEC 238
S+ + V +
Sbjct: 88 ADSIPVVSLVKSDGT 102
>d1g2914 b.40.6.3 (1:302-372) Maltose transport protein MalK,
C-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 71
Score = 26.7 bits (59), Expect = 1.1
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 21/70 (30%)
Query: 251 KEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVAN-------------- 296
+ P E+ + + E LG +V L G S+ +
Sbjct: 2 RVPGENLVRAVVEIVENLGSERIV----RLRVGGVTFVGSFRSESRVREGVEVDVVFDMK 57
Query: 297 ---LFDVETG 303
+FD TG
Sbjct: 58 KIHIFDKTTG 67
>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 213
Score = 27.9 bits (62), Expect = 1.4
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 7/65 (10%)
Query: 178 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWE 237
+ S + V + + + + + R+ P +V +WQ + E
Sbjct: 143 AVSRNNQVAVQAVIWSAAPRPGT--TKEQKAPRYQPAAP-----PCSANVWVWQYGRDAE 195
Query: 238 CLNND 242
D
Sbjct: 196 VCPVD 200
>d2yvxa1 a.118.26.1 (A:7-131) Magnesium transporter MgtE {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 27.3 bits (60), Expect = 1.7
Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 231 QAVINWECLNNDNDSDLDESKEPDESSITLRT----PVKELLGHSNVVIAADWLSDGEQV 286
+ L +++ P+E + L+T ++E+L ++ AD L +
Sbjct: 38 HRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKE 97
Query: 287 ITASWDRVANLFDVETGTILQSLTGHDE 314
A + R+ +L D T +++L ++E
Sbjct: 98 DPAYFQRLKDLLDPRTRAEVEALARYEE 125
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.376
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,244,021
Number of extensions: 54488
Number of successful extensions: 301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 120
Length of query: 361
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 275
Effective length of database: 1,226,816
Effective search space: 337374400
Effective search space used: 337374400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.6 bits)