Query psy8432
Match_columns 788
No_of_seqs 93 out of 112
Neff 1.9
Searched_HMMs 46136
Date Fri Aug 16 18:41:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0260|consensus 100.0 8.7E-56 1.9E-60 494.6 15.8 147 268-415 1459-1605(1605)
2 KOG0260|consensus 100.0 2.9E-55 6.2E-60 490.5 16.0 157 264-421 1448-1604(1605)
3 KOG1999|consensus 83.1 12 0.00025 45.5 11.8 36 30-67 523-564 (1024)
4 KOG1999|consensus 68.1 54 0.0012 40.2 11.9 21 396-416 888-909 (1024)
5 KOG0307|consensus 30.8 3.1E+02 0.0068 34.2 10.2 11 187-197 683-693 (1049)
6 PTZ00449 104 kDa microneme/rho 25.4 2.8E+02 0.0061 33.1 8.2 8 44-51 299-306 (943)
7 KOG0307|consensus 24.3 5E+02 0.011 32.7 10.3 22 411-432 936-957 (1049)
8 COG0796 MurI Glutamate racemas 19.2 23 0.00049 37.4 -1.5 10 50-59 72-81 (269)
9 KOG4217|consensus 16.6 7.8E+02 0.017 29.1 9.3 124 286-419 136-262 (605)
10 PF02331 P35: Apoptosis preven 13.5 52 0.0011 35.7 -0.6 29 10-41 190-218 (301)
No 1
>KOG0260|consensus
Probab=100.00 E-value=8.7e-56 Score=494.59 Aligned_cols=147 Identities=15% Similarity=0.415 Sum_probs=74.8
Q ss_pred CcccCCCCccCCCCccccCCccccCCCCCcCCCCCCCCCCCccccCCCccccCCCCCccccCCCCCCCCCCccCCCcccc
Q psy8432 268 YKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKK 347 (788)
Q Consensus 268 YSPlSP~YSPtSPsYSPtSP~YSPTSP~YSPTSPaYSPTSPsYSPTSPaYSPTSPsYSPtSPsYSPTSPsYSPTSP~YSP 347 (788)
|+|+||.|+|+||+|+|+||.|+|+||.||||||.||||||+||||||.|+||||+|||+||+|||+||+|||+||+|||
T Consensus 1459 ysptsp~ys~tsp~~sptspsysptspsysptspsysptspsysptspsysptspsysptspsysptspsysptspsysp 1538 (1605)
T KOG0260|consen 1459 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1538 (1605)
T ss_pred CCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 33333334444444444444444444444444444444444444444444444444444555555555555555555555
Q ss_pred CCCccccccCccccCCCCCcccccccccccCCCcccccccccCCCCCcccCcccccCCCCcccccccc
Q psy8432 348 SAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNY 415 (788)
Q Consensus 348 TSPsYSPTSPsYSPTSPsYSPtSPaYSPtSPsYSPtSPsYsPSsPsYSPlSPsYSPtSPsYSPtSP~Y 415 (788)
|||+||||||+||||||+|+||||.|+|++|+||||||+|+ ++|+|+|++|+|+|++|.|+|++|+|
T Consensus 1539 tspsysptspsysptspsysptsp~ysptspsysptspsys-~~~~ysp~sp~ysptsp~ysp~spsy 1605 (1605)
T KOG0260|consen 1539 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-TSPSYSPTSPSYSPTSPSYSPTSPSY 1605 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc-CCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 55555555555555555555555555555555555555555 55555555555555555555555554
No 2
>KOG0260|consensus
Probab=100.00 E-value=2.9e-55 Score=490.47 Aligned_cols=157 Identities=15% Similarity=0.404 Sum_probs=76.9
Q ss_pred cCCCCcccCCCCccCCCCccccCCccccCCCCCcCCCCCCCCCCCccccCCCccccCCCCCccccCCCCCCCCCCccCCC
Q psy8432 264 SAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAH 343 (788)
Q Consensus 264 ss~aYSPlSP~YSPtSPsYSPtSP~YSPTSP~YSPTSPaYSPTSPsYSPTSPaYSPTSPsYSPtSPsYSPTSPsYSPTSP 343 (788)
+||+|||+||.|+|+||.|+|+||.|+|+||.||||||.||||||+||||||+|+||||+|||+||+|||+||+|||+||
T Consensus 1448 ssp~~s~tsp~ysptsp~ys~tsp~~sptspsysptspsysptspsysptspsysptspsysptspsysptspsysptsp 1527 (1605)
T KOG0260|consen 1448 SSPGYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1527 (1605)
T ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred ccccCCCccccccCccccCCCCCcccccccccccCCCcccccccccCCCCCcccCcccccCCCCccccccccccCccc
Q psy8432 344 NYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHN 421 (788)
Q Consensus 344 ~YSPTSPsYSPTSPsYSPTSPsYSPtSPaYSPtSPsYSPtSPsYsPSsPsYSPlSPsYSPtSPsYSPtSP~YspSSpn 421 (788)
+||||||+|||+||+||||||.|+||||.|+|+||+|+|+||+|+|++|+|+ ++|+|||++|.|+|++|.|+|.+|.
T Consensus 1528 sysptspsysptspsysptspsysptspsysptsp~ysptspsysptspsys-~~~~ysp~sp~ysptsp~ysp~sps 1604 (1605)
T KOG0260|consen 1528 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-TSPSYSPTSPSYSPTSPSYSPTSPS 1604 (1605)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc-CCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 4444444444444444444444444444444444444444444444444444 4444444444444444444444443
No 3
>KOG1999|consensus
Probab=83.08 E-value=12 Score=45.48 Aligned_cols=36 Identities=33% Similarity=0.471 Sum_probs=22.6
Q ss_pred cccCcccccccccccccc------hhhhccccceEEEeecCcee
Q psy8432 30 KLHDLPIADLTLKYGDLI------TEVVACNTATVIRVNKSDIY 67 (788)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 67 (788)
.||||-.-|.. ..|-+| .+||.-+- -||+|-+++|-
T Consensus 523 e~hdlVqLd~~-~vgvI~rle~e~~~vl~~~g-~v~~i~~~~i~ 564 (1024)
T KOG1999|consen 523 ELHDLVQLDNQ-NVGVIVRLERETFQVLGMNG-KVVTIRKSSIT 564 (1024)
T ss_pred cccceeecCCC-cEEEEEEecchheeeecCcC-ceEEEeechhh
Confidence 47888777765 555433 35555554 67777777764
No 4
>KOG1999|consensus
Probab=68.10 E-value=54 Score=40.21 Aligned_cols=21 Identities=5% Similarity=0.023 Sum_probs=11.3
Q ss_pred ccCcccccCCCCc-cccccccc
Q psy8432 396 ELAHNYKKSAHNY-KELAHNYK 416 (788)
Q Consensus 396 PlSPsYSPtSPsY-SPtSP~Ys 416 (788)
|.+.+|.|.+|.- -|.+|+-+
T Consensus 888 pss~s~~p~tpgg~~~~Tpgs~ 909 (1024)
T KOG1999|consen 888 PSSSSYGPKTPGGGNPMTPGSG 909 (1024)
T ss_pred CcccccCCCCCCCCCCCCCCcc
Confidence 3334466666654 66666543
No 5
>KOG0307|consensus
Probab=30.80 E-value=3.1e+02 Score=34.25 Aligned_cols=11 Identities=9% Similarity=-0.007 Sum_probs=4.9
Q ss_pred HHhhhhhccCC
Q psy8432 187 LAHNYKKSAHN 197 (788)
Q Consensus 187 l~~ny~~sS~N 197 (788)
.|.+|+...++
T Consensus 683 ~A~~~l~~~~s 693 (1049)
T KOG0307|consen 683 AAMSFLPLLPS 693 (1049)
T ss_pred HHHhhcCcCcc
Confidence 34444444443
No 6
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=25.38 E-value=2.8e+02 Score=33.06 Aligned_cols=8 Identities=38% Similarity=0.426 Sum_probs=3.3
Q ss_pred cccchhhh
Q psy8432 44 GDLITEVV 51 (788)
Q Consensus 44 ~~~~~~~~ 51 (788)
|-.||.||
T Consensus 299 ~~citk~~ 306 (943)
T PTZ00449 299 GFCITKLF 306 (943)
T ss_pred CceEEEEe
Confidence 34444443
No 7
>KOG0307|consensus
Probab=24.29 E-value=5e+02 Score=32.66 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=8.7
Q ss_pred cccccccCcccchhcchhhhhh
Q psy8432 411 LAHNYKKSAHNYKELAHNYKKS 432 (788)
Q Consensus 411 tSP~YspSSpnYltl~~nyl~~ 432 (788)
..+.-..-.|..+..-...++.
T Consensus 936 ~~~~~~~~~P~~~~~i~~~~e~ 957 (1049)
T KOG0307|consen 936 TAPAPKHPIPEELQIIETFLEE 957 (1049)
T ss_pred CCCCcccCCchHHHHHHHHHHH
Confidence 3333344444444333334333
No 8
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=19.23 E-value=23 Score=37.44 Aligned_cols=10 Identities=60% Similarity=1.125 Sum_probs=0.0
Q ss_pred hhccccceEE
Q psy8432 50 VVACNTATVI 59 (788)
Q Consensus 50 ~~~~~~~~~~ 59 (788)
|+|||||+.+
T Consensus 72 VIACNTASa~ 81 (269)
T COG0796 72 VIACNTASAV 81 (269)
T ss_pred EEecchHHHH
No 9
>KOG4217|consensus
Probab=16.55 E-value=7.8e+02 Score=29.07 Aligned_cols=124 Identities=8% Similarity=0.058 Sum_probs=0.0
Q ss_pred CCccccCCCCCcCCCCCCCCC-CCccccCCCc-cccCCCCCccccCCCCCCCCCC-ccCCCccccCCCccccccCccccC
Q psy8432 286 AHNYKKSAHNYKELAHNYKKS-AHNYKELAHN-YKKSAHNYKELAHNYKKSAHNY-KELAHNYKKSAHNYKELAHNYKKS 362 (788)
Q Consensus 286 SP~YSPTSP~YSPTSPaYSPT-SPsYSPTSPa-YSPTSPsYSPtSPsYSPTSPsY-SPTSP~YSPTSPsYSPTSPsYSPT 362 (788)
|-.|.|.||. +|+.|+|.|. ++-|..++|. |.| ++++ ..-+.-++..|.| +|.+| |.-++++|.|- .
T Consensus 136 s~~~~~ss~~-sPttpafqpp~~~~wd~~a~~~~~p-~~a~-~~~~~~~~~~p~fs~~~~p---~~~~~~sP~s~----~ 205 (605)
T KOG4217|consen 136 SSYYKPSSPP-SPTTPAFQPPHSDLWDATAPGHFNP-SQAL-ENDFMPNPRLPLFSGPPSP---PHFFSFSPVSG----S 205 (605)
T ss_pred cccccCCCCC-CCCCCCCCCCCCccccccCccccCc-hhhh-hcCCCCcccCccccCCCCC---CCCCCCCCCCC----c
Q ss_pred CCCCcccccccccccCCCcccccccccCCCCCcccCcccccCCCCccccccccccCc
Q psy8432 363 AHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSA 419 (788)
Q Consensus 363 SPsYSPtSPaYSPtSPsYSPtSPsYsPSsPsYSPlSPsYSPtSPsYSPtSP~YspSS 419 (788)
+.+|-++..-+-|+...+.-.++-=.-.+-++-++...-+++.++..-+.+..++-+
T Consensus 206 ~~~~~~~~~~~~~~~a~~~~~~g~syslP~s~P~l~~~~~~~as~ll~tps~~s~ps 262 (605)
T KOG4217|consen 206 SRGYDALTLPLNPTQATHQLPEGESYSLPTSFPGLQGTPHFHASQLLSTPSVPSPPS 262 (605)
T ss_pred ccccccccCccCcccccccCCCCccccCCCCCCcCCCCcccccccccCCCCCCCCcc
No 10
>PF02331 P35: Apoptosis preventing protein; InterPro: IPR003429 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The anti-apoptotic protein p35 from baculovirus is thought to prevent the suicidal response of infected insect cells by inhibiting caspases. Ectopic expression of p35 in a number of transgenic animals or cell lines is also anti-apoptotic, giving rise to the hypothesis that the protein is a general inhibitor of caspases. This protein belongs to MEROPS proteinase inhibitor family I50, clan IQ. Purified recombinant p35 inhibits human caspase-1, -3, -6, -7, -8, and -10 but does not significantly inhibit unrelated serine or cysteine proteases, implying that p35 is a potent caspase-specific inhibitor. The interaction of p35 with caspase-3, as a model of the inhibitory mechanism,revealed classic slow-binding inhibition, with both active-sites of the caspase-3 dimer acting equally and independently. Inhibition resulted from complex formation between the enzyme and inhibitor, which could be visualised under non-denaturing conditions, but was dissociated by SDS to give p35 cleaved at Asp87, the P1 residue of the inhibitor. Complex formation requires the substrate-binding cleft to be unoccupied []. Infecting the insect cell line IPLB-Ld652Y with the baculovirus Autographa californica nuclear polyhedrosis virus (AcMNPV) results in global translation arrest, which correlates with the presence of the AcMNPV apoptotic suppressor, p35. However, the anti-apoptotic function of p35 in translation arrest is not solely due to caspase inactivation, but its activity enhances signalling to a separate translation arrest pathway, possibly by stimulating the late stages of the baculovirus infection cycle []. ; GO: 0043027 caspase inhibitor activity, 0006916 anti-apoptosis; PDB: 1I4E_A 1I3S_C 1P35_B 2FUN_A 1I3P_A.
Probab=13.49 E-value=52 Score=35.69 Aligned_cols=29 Identities=38% Similarity=0.707 Sum_probs=0.0
Q ss_pred ccccccccceeeeccccccccccCcccccccc
Q psy8432 10 NEAGVMNYDIIAYGSVCRDVKLHDLPIADLTL 41 (788)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (788)
|+.|++.||+||+ -+||.+-+.|+.+|.+
T Consensus 190 nd~G~y~YdV~A~---V~~V~~~~~~vq~L~~ 218 (301)
T PF02331_consen 190 NDNGVYSYDVIAM---VDGVRCFNKPVQSLIL 218 (301)
T ss_dssp -TTS-EEEEEEEE---EESBEHHHHHHHT-B-
T ss_pred ccCCccchhhhhe---ecchhhhhhHHHHHHh
Done!