Query psy8432
Match_columns 788
No_of_seqs 93 out of 112
Neff 1.9
Searched_HMMs 29240
Date Fri Aug 16 18:42:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1twf_A B220, DNA-directed RNA 100.0 4.4E-50 1.5E-54 466.5 0.0 188 235-422 1530-1717(1733)
2 1twf_A B220, DNA-directed RNA 100.0 1.3E-49 4.3E-54 462.6 0.0 197 225-421 1527-1723(1733)
3 3h0g_A DNA-directed RNA polyme 100.0 2.9E-39 1E-43 376.4 0.0 204 215-419 1547-1750(1752)
4 3h0g_A DNA-directed RNA polyme 100.0 6.6E-39 2.3E-43 373.5 0.0 198 223-421 1548-1745(1752)
5 2k5f_A Ferrous iron transport 28.5 31 0.0011 29.8 2.6 55 37-92 28-96 (105)
6 1deq_A Fibrinogen (alpha chain 10.1 1.1E+03 0.039 25.3 9.5 99 269-373 269-386 (390)
7 3alx_A Hemagglutinin, CDW150; 8.3 92 0.0031 34.4 0.5 43 6-48 214-256 (559)
8 2zae_A Ribonuclease P protein 8.2 3.1E+02 0.011 25.2 3.8 76 1-77 1-105 (127)
9 2zb6_A Hemagglutinin protein; 8.0 97 0.0033 33.8 0.5 43 6-48 249-291 (481)
10 3u0g_A Putative branched-chain 7.7 93 0.0032 31.2 0.2 47 7-53 14-64 (328)
No 1
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=100.00 E-value=4.4e-50 Score=466.46 Aligned_cols=188 Identities=14% Similarity=0.381 Sum_probs=0.0
Q ss_pred cCCCCcccccccccccCcchhhhcccccccCCCCcccCCCCccCCCCccccCCccccCCCCCcCCCCCCCCCCCccccCC
Q psy8432 235 KSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELA 314 (788)
Q Consensus 235 ~sS~nY~p~SpnYs~tSpnY~~ls~nY~~ss~aYSPlSP~YSPtSPsYSPtSP~YSPTSP~YSPTSPaYSPTSPsYSPTS 314 (788)
++|++|+|+||+|+|++|.|.+.++.|++.+|.|+|+||+|+|+||.|+|+||.|+|+||.|+|+||.|+|+||+|+|+|
T Consensus 1530 ~~~~~~~~~sP~~~~~~~~~s~~s~~~s~~~p~~~~~sp~~~~~sp~~sp~sp~~sptsp~~sp~s~~~~ptsp~ysp~s 1609 (1733)
T 1twf_A 1530 PTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1609 (1733)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 33333333334343333333333333444444444444444444444444444444444444444444444444444444
Q ss_pred CccccCCCCCccccCCCCCCCCCCccCCCccccCCCccccccCccccCCCCCcccccccccccCCCcccccccccCCCCC
Q psy8432 315 HNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNY 394 (788)
Q Consensus 315 PaYSPTSPsYSPtSPsYSPTSPsYSPTSP~YSPTSPsYSPTSPsYSPTSPsYSPtSPaYSPtSPsYSPtSPsYsPSsPsY 394 (788)
|.|+|+||+|+|+||.|+|+||+|+|+||.|||+||.|||+||+|+|+||.|+|+||.|+|++|.|+|+||.|+|++|.|
T Consensus 1610 p~~sptsp~~sptsp~ysP~sp~~sptsp~ysp~sp~~sp~sp~y~p~sp~~sp~sp~~~p~sp~y~p~sp~y~p~sp~~ 1689 (1733)
T 1twf_A 1610 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1689 (1733)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred cccCcccccCCCCccccccccccCcccc
Q psy8432 395 KELAHNYKKSAHNYKELAHNYKKSAHNY 422 (788)
Q Consensus 395 SPlSPsYSPtSPsYSPtSP~YspSSpnY 422 (788)
+|+||+|+|++|+|+|++|+|+|++|.|
T Consensus 1690 sp~sp~~~p~~p~~~p~sp~~~p~~p~~ 1717 (1733)
T 1twf_A 1690 SPTSPNYSPTSPSYSPTSPGYSPGSPAY 1717 (1733)
T ss_dssp ----------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 4444444444444444444444444444
No 2
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=100.00 E-value=1.3e-49 Score=462.63 Aligned_cols=197 Identities=14% Similarity=0.355 Sum_probs=0.0
Q ss_pred cchhcccccccCCCCcccccccccccCcchhhhcccccccCCCCcccCCCCccCCCCccccCCccccCCCCCcCCCCCCC
Q psy8432 225 NYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYK 304 (788)
Q Consensus 225 NY~~lS~nYs~sS~nY~p~SpnYs~tSpnY~~ls~nY~~ss~aYSPlSP~YSPtSPsYSPtSP~YSPTSP~YSPTSPaYS 304 (788)
.|.+.|++|+|+|++|+|++|.|+|+||.|.+.++.|++.+|.|+|+||+|+|+||+|+|+||.|+|+||.|+|+||.|+
T Consensus 1527 ~~~~~~~~~~~~sP~~~~~~~~~s~~s~~~s~~~p~~~~~sp~~~~~sp~~sp~sp~~sptsp~~sp~s~~~~ptsp~ys 1606 (1733)
T 1twf_A 1527 GEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1606 (1733)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 45555666666666666666666666666666666777777778888888888888888888888888888888888888
Q ss_pred CCCCccccCCCccccCCCCCccccCCCCCCCCCCccCCCccccCCCccccccCccccCCCCCcccccccccccCCCcccc
Q psy8432 305 KSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELA 384 (788)
Q Consensus 305 PTSPsYSPTSPaYSPTSPsYSPtSPsYSPTSPsYSPTSP~YSPTSPsYSPTSPsYSPTSPsYSPtSPaYSPtSPsYSPtS 384 (788)
|+||.|+|+||+|+|+||.|+|+||+|+|+||.|+|+||.|||+||+|+|+||.|||+||.|+|+||.|+|++|.|+|+|
T Consensus 1607 p~sp~~sptsp~~sptsp~ysP~sp~~sptsp~ysp~sp~~sp~sp~y~p~sp~~sp~sp~~~p~sp~y~p~sp~y~p~s 1686 (1733)
T 1twf_A 1607 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1686 (1733)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cccccCCCCCcccCcccccCCCCccccccccccCccc
Q psy8432 385 HNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHN 421 (788)
Q Consensus 385 PsYsPSsPsYSPlSPsYSPtSPsYSPtSP~YspSSpn 421 (788)
|.|+|++|.|+|+||.|+|+||+|+|++|+|+|+..+
T Consensus 1687 p~~sp~sp~~~p~~p~~~p~sp~~~p~~p~~~~~~~~ 1723 (1733)
T 1twf_A 1687 PSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDE 1723 (1733)
T ss_dssp -------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhh
Confidence 8888888888888899999999999999998887543
No 3
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-39 Score=376.42 Aligned_cols=204 Identities=14% Similarity=0.394 Sum_probs=0.0
Q ss_pred hhcccccCCCcchhcccccccCCCCcccccccccccCcchhhhcccccccCCCCcccCCCCccCCCCccccCCccccCCC
Q psy8432 215 LAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAH 294 (788)
Q Consensus 215 lS~nYs~ts~NY~~lS~nYs~sS~nY~p~SpnYs~tSpnY~~ls~nY~~ss~aYSPlSP~YSPtSPsYSPtSP~YSPTSP 294 (788)
++|.|+.++|.|.+.+++|+ +++.|.|.+|.|+++||.|...++.|.+++|+|+|++|+++|++|.|+|+||.|+|+||
T Consensus 1547 ~~pg~~~~sp~~s~s~P~~s-~sp~~~p~sP~ysptSP~~s~tsP~ysptspaysptsps~s~tsp~yspts~~ysptSP 1625 (1752)
T 3h0g_A 1547 MSPGYGLTSPSYSPSSPGYS-TSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSP 1625 (1752)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 34445555555544444444 23344444444544444444444444444444555555444445555555555555555
Q ss_pred CCcCCCCCCCCCCCccccCCCccccCCCCCccccCCCCCCCCCCccCCCccccCCCccccccCccccCCCCCcccccccc
Q psy8432 295 NYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYK 374 (788)
Q Consensus 295 ~YSPTSPaYSPTSPsYSPTSPaYSPTSPsYSPtSPsYSPTSPsYSPTSP~YSPTSPsYSPTSPsYSPTSPsYSPtSPaYS 374 (788)
.|+|+||.|+|+||+|+|+||.|+|+||.|+|++|.|+|+||.|+|+||+|+|+||.|+|++|.|+|++|.|+|++|.|+
T Consensus 1626 sysptSPs~sptsPsysptsPs~sptSPs~sptspsysp~SPsySp~Sps~Sp~sps~sp~sP~~sp~sPsySp~sp~~s 1705 (1752)
T 3h0g_A 1626 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1705 (1752)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cccCCCcccccccccCCCCCcccCcccccCCCCccccccccccCc
Q psy8432 375 KSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSA 419 (788)
Q Consensus 375 PtSPsYSPtSPsYsPSsPsYSPlSPsYSPtSPsYSPtSP~YspSS 419 (788)
|.+|+|+|.+|+|+|.+|.|+|.+|+|+|++|.++|.+|.++|.+
T Consensus 1706 p~sp~~sP~sp~~sp~sP~ysp~sps~sp~sp~~Sp~sp~~sp~~ 1750 (1752)
T 3h0g_A 1706 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750 (1752)
T ss_dssp ---------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 555555555555555555555555555555555555555444443
No 4
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.6e-39 Score=373.47 Aligned_cols=198 Identities=15% Similarity=0.388 Sum_probs=0.0
Q ss_pred CCcchhcccccccCCCCcccccccccccCcchhhhcccccccCCCCcccCCCCccCCCCccccCCccccCCCCCcCCCCC
Q psy8432 223 AHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHN 302 (788)
Q Consensus 223 s~NY~~lS~nYs~sS~nY~p~SpnYs~tSpnY~~ls~nY~~ss~aYSPlSP~YSPtSPsYSPtSP~YSPTSP~YSPTSPa 302 (788)
+|.|.+++++|++++++|+ ++|.|++++|.|...++.|.+++|.|+|++|.|+|++|.++|+||.|+|++|.|+|+||.
T Consensus 1548 ~pg~~~~sp~~s~s~P~~s-~sp~~~p~sP~ysptSP~~s~tsP~ysptspaysptsps~s~tsp~yspts~~ysptSPs 1626 (1752)
T 3h0g_A 1548 SPGYGLTSPSYSPSSPGYS-TSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPS 1626 (1752)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 3444444444444444444 344444445544444444444444444444444444444444455555555555555555
Q ss_pred CCCCCCccccCCCccccCCCCCccccCCCCCCCCCCccCCCccccCCCccccccCccccCCCCCcccccccccccCCCcc
Q psy8432 303 YKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHNYKE 382 (788)
Q Consensus 303 YSPTSPsYSPTSPaYSPTSPsYSPtSPsYSPTSPsYSPTSP~YSPTSPsYSPTSPsYSPTSPsYSPtSPaYSPtSPsYSP 382 (788)
|+|+||.|+|+||.|+|+||.|+|+||.|+|+||.|+|+||+|+|+||.|+|+||.|+|++|.|+|++|.|+|++|.|+|
T Consensus 1627 ysptSPs~sptsPsysptsPs~sptSPs~sptspsysp~SPsySp~Sps~Sp~sps~sp~sP~~sp~sPsySp~sp~~sp 1706 (1752)
T 3h0g_A 1627 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706 (1752)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cccccccCCCCCcccCcccccCCCCccccccccccCccc
Q psy8432 383 LAHNYKKSAHNYKELAHNYKKSAHNYKELAHNYKKSAHN 421 (788)
Q Consensus 383 tSPsYsPSsPsYSPlSPsYSPtSPsYSPtSP~YspSSpn 421 (788)
.+|+|+|++|.|+|.+|.|+|.+|.|+|++|.++|.+|.
T Consensus 1707 ~sp~~sP~sp~~sp~sP~ysp~sps~sp~sp~~Sp~sp~ 1745 (1752)
T 3h0g_A 1707 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1745 (1752)
T ss_dssp ---------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 555555555555555555555555555555555555443
No 5
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=28.50 E-value=31 Score=29.79 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=31.7
Q ss_pred ccccccccccchhhhcc---ccceEEEeecCc----------eeEeeec-cccccCccccccccccccCC
Q psy8432 37 ADLTLKYGDLITEVVAC---NTATVIRVNKSD----------IYLHYQY-ECRRFSPFHQRERRFIFGPT 92 (788)
Q Consensus 37 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 92 (788)
.|+-|.-|..|+ |+.. .-..+|+|+... |++--.- .|.-=.||+|+.||+-||-.
T Consensus 28 ~~lGl~pG~~V~-Vv~~~P~ggpi~V~v~g~~iaL~~~~A~~I~Ve~~~~~~~~~~~~~~~~~~~~~~~~ 96 (105)
T 2k5f_A 28 MDLGLVRGAKLK-VLRFAPLGDPIEVNCNGMLLTMRRNEAEGITVHILAGDEGHPHGWPGFRRRHRFGKR 96 (105)
T ss_dssp HHHTCSTTCEEE-EEEECSSSCSEEEEETTEEEEECHHHHHHEEEEESCCCCSSCCCSSCSSCCCCSCSC
T ss_pred HHcCCCCCCEEE-EEEECCCCCCEEEEECCEEEEeCHHHhCceEEEEccccCCCCCcchhhhhhhcccch
Confidence 345555555553 3332 224555555443 3333333 46445999999999999964
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=10.15 E-value=1.1e+03 Score=25.26 Aligned_cols=99 Identities=6% Similarity=0.001 Sum_probs=0.0
Q ss_pred cccCCCCccCCCCccccCCccccCCCCCcCCCC------CCCCCCCc------cccCCCccccCCCCCccccCCCCCCCC
Q psy8432 269 KELAHNYKKSAHNYKELAHNYKKSAHNYKELAH------NYKKSAHN------YKELAHNYKKSAHNYKELAHNYKKSAH 336 (788)
Q Consensus 269 SPlSP~YSPtSPsYSPtSP~YSPTSP~YSPTSP------aYSPTSPs------YSPTSPaYSPTSPsYSPtSPsYSPTSP 336 (788)
+|.+|+ +-......|.|+.+. ++....|.+| .+.|-|+. +.|-+|. |.+-+-......-.+..-
T Consensus 269 sp~~~g-s~g~g~~~pGS~gpG-s~g~w~pg~~~~Gs~g~w~pGs~~pgs~g~w~~Gs~~--pg~~g~~~~g~~~~gs~g 344 (390)
T 1deq_A 269 SPRKPG-TSSIGNVNPGSYGPG-SSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPE--PGSAGTWNPGRPEPGSAG 344 (390)
T ss_pred CCCCCC-CCCCCCcCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCcc
Q ss_pred CCccCCCccccCCCc----cccccCccccCCC---CCccccccc
Q psy8432 337 NYKELAHNYKKSAHN----YKELAHNYKKSAH---NYKELAHNY 373 (788)
Q Consensus 337 sYSPTSP~YSPTSPs----YSPTSPsYSPTSP---sYSPtSPaY 373 (788)
.|.|.|+ +|-|-. .++-+.+|+|.|. .-.|+.|-|
T Consensus 345 ~~~~gs~--~~gs~g~~~~~~~~~~~~~p~s~g~g~~~p~~p~w 386 (390)
T 1deq_A 345 TWNPGRP--EPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSPDW 386 (390)
T ss_pred ccCCCCC--CCCcCcccccCCCCCCCCCCCCCCCCCCCCCCCCC
No 7
>3alx_A Hemagglutinin, CDW150; viral protein-receptor complex, six-bladed beta-propeller FO immunoglobulin fold, beta-sandwich; HET: NAG; 3.15A {Measles virus} PDB: 3alw_A*
Probab=8.31 E-value=92 Score=34.43 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=0.0
Q ss_pred hhccccccccccceeeeccccccccccCcccccccccccccch
Q psy8432 6 CAQTNEAGVMNYDIIAYGSVCRDVKLHDLPIADLTLKYGDLIT 48 (788)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (788)
|-||.-.-.-.-.|=|||-.--++++-+-|-.|++..||-||+
T Consensus 214 Cn~t~wePl~~~RIPaYg~ltl~L~~~~dl~i~I~s~fGPlI~ 256 (559)
T 3alx_A 214 CENPEWAPLKDNRIPSYGVLSVDLSLTVELKIKIASGFGPLIT 256 (559)
T ss_dssp HSSCCSHHHHTTCCCEEEEEEEETTSSSCCCEEEECCCCSCCS
T ss_pred cCCCCCccccCCCcccceEEEEEeccccCccEEEEeccCCceE
No 8
>2zae_A Ribonuclease P protein component 1; ribonuclease P protein subunits, hetero dimer, hydrolase, TR processing; 2.21A {Pyrococcus horikoshii} PDB: 2ki7_A
Probab=8.15 E-value=3.1e+02 Score=25.20 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=0.0
Q ss_pred Ccchhhhcccccc---ccccceeeeccccccccccCcccccccccccccc---hhhhccccc------------------
Q psy8432 1 MRRNACAQTNEAG---VMNYDIIAYGSVCRDVKLHDLPIADLTLKYGDLI---TEVVACNTA------------------ 56 (788)
Q Consensus 1 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------------------ 56 (788)
||||+-..-+.++ -|-||-++ |-.|.+-.+|+--|..-.|-.-||| .|||.|.-.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~t~~~L~~aDl~Ga~v~Vv~S~~pslVGi~GiVV~ETknTf~ 79 (127)
T 2zae_A 1 MRRNSKERKNRATRRSQGSYQEII-GRTWIFRGAHRGRVTRRNIIWHELIGLRVRIVGSTHPAFVGIEGYVIDETRNMLV 79 (127)
T ss_dssp -----------------CTTGGGT-TCGGGGTTTCCSCCCTTTTTTSCCTTCEEEEEEESSGGGTTCEEEEEEEETTEEE
T ss_pred CcccchhhccccCCCCCCchhhhh-hhhhhhhhccccccCHHHHHHHHhcCCEEEEEEcCCCCccCcEEEEEEcccceEE
Q ss_pred ----eEEEeecCceeEeeecc-cccc
Q psy8432 57 ----TVIRVNKSDIYLHYQYE-CRRF 77 (788)
Q Consensus 57 ----~~~~~~~~~~~~~~~~~-~~~~ 77 (788)
.|.+|-|...-+.++.. +..|
T Consensus 80 I~t~~~k~VPK~~~vF~f~l~dg~~v 105 (127)
T 2zae_A 80 IAGDRIWKVPKDVSIFEFEADDGTKI 105 (127)
T ss_dssp EESSSEEEEESTTEEEEEECTTSCEE
T ss_pred EEcCCEEEEECCCeEEEEEeCCCeEE
No 9
>2zb6_A Hemagglutinin protein; beta propeller, envelope protein, membrane, transmembrane, virion, viral protein; HET: NAG; 2.60A {Measles virus strain edmonston-b} PDB: 2zb5_A* 3alz_A* 2rkc_A* 3inb_A*
Probab=7.98 E-value=97 Score=33.80 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=0.0
Q ss_pred hhccccccccccceeeeccccccccccCcccccccccccccch
Q psy8432 6 CAQTNEAGVMNYDIIAYGSVCRDVKLHDLPIADLTLKYGDLIT 48 (788)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (788)
|-||.-.-.-.-.|=|||-.--++++-+-|--|++..||-||+
T Consensus 249 Cn~t~wePl~~~RIPaYg~ltl~L~~~~dl~i~I~s~~GPlI~ 291 (481)
T 2zb6_A 249 CENPEWAPLKDNRIPSYGVLSVDLSLTVELKIKIASGFGPLIT 291 (481)
T ss_dssp HHSCCSHHHHTTCCCEEEEEEEESSTTSCCCBEEEEECCSCCC
T ss_pred cCCCCCccccCCCcccceEEEEEeccccCccEEEEeccCCceE
No 10
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}
Probab=7.69 E-value=93 Score=31.18 Aligned_cols=47 Identities=26% Similarity=0.214 Sum_probs=0.0
Q ss_pred hccccccccccc----eeeeccccccccccCcccccccccccccchhhhcc
Q psy8432 7 AQTNEAGVMNYD----IIAYGSVCRDVKLHDLPIADLTLKYGDLITEVVAC 53 (788)
Q Consensus 7 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (788)
|||...|.|-.| +|-......+..--.+++.|..|.|||-|-|++.+
T Consensus 14 ~~~~~~~~m~~~~~~~~~w~nG~~vp~~~~~i~~~drg~~yGdgvFEtir~ 64 (328)
T 3u0g_A 14 AQTQGPGSMSMADRDGKIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRA 64 (328)
T ss_dssp --------CCTTSCCSEEEETTEEEEGGGCEEESSCHHHHHCCEEECCEEE
T ss_pred ecccCCccceeccCCCEEEECCEEeehHhCccCccchHHhcCceEEEEEEE
Done!