Query psy8432
Match_columns 788
No_of_seqs 93 out of 112
Neff 1.9
Searched_HMMs 13730
Date Fri Aug 16 18:42:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8432.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8432hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b74a1 c.78.2.1 (A:1-105) Glu 32.7 2.4 0.00017 35.6 -1.6 12 50-61 67-78 (105)
2 d1ig3a1 b.82.6.1 (A:179-263) T 17.8 23 0.0017 28.0 1.6 32 17-48 25-58 (85)
3 d1ri9a_ b.34.2.1 (A:) Fyn-bind 14.6 66 0.0048 25.7 3.7 40 20-68 20-59 (77)
4 d1g55a_ c.66.1.26 (A:) DNMT2 { 13.9 30 0.0022 30.0 1.5 80 15-95 67-171 (343)
5 d1gu7a1 b.35.1.2 (A:23-160,A:3 12.9 12 0.00088 30.3 -1.4 41 21-67 11-51 (175)
6 d2c7pa1 c.66.1.26 (A:1-327) DN 9.1 2.1E+02 0.015 24.5 5.5 24 8-31 63-86 (327)
7 d2guya1 b.71.1.1 (A:382-476) F 7.8 58 0.0042 26.6 1.0 26 33-58 39-64 (95)
8 d1z45a1 b.30.5.4 (A:358-699) G 7.5 67 0.0049 29.4 1.4 57 2-61 13-73 (342)
9 d1hh2p1 b.40.4.5 (P:127-198) S 7.2 1E+02 0.0076 23.4 2.2 25 42-69 3-27 (72)
10 d2aaaa1 b.71.1.1 (A:382-476) F 6.1 55 0.004 26.7 0.0 26 33-58 39-64 (95)
No 1
>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
Probab=32.75 E-value=2.4 Score=35.62 Aligned_cols=12 Identities=58% Similarity=0.874 Sum_probs=9.8
Q ss_pred hhccccceEEEe
Q psy8432 50 VVACNTATVIRV 61 (788)
Q Consensus 50 ~~~~~~~~~~~~ 61 (788)
|||||||+++-+
T Consensus 67 ViACNTaS~~al 78 (105)
T d1b74a1 67 VVACNTASAYAL 78 (105)
T ss_dssp EECCHHHHHHHH
T ss_pred EEecCcHHHHHH
Confidence 899999997643
No 2
>d1ig3a1 b.82.6.1 (A:179-263) Thiamin pyrophosphokinase, substrate-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.78 E-value=23 Score=28.03 Aligned_cols=32 Identities=25% Similarity=0.555 Sum_probs=27.3
Q ss_pred cceeeeccccccccccCc--ccccccccccccch
Q psy8432 17 YDIIAYGSVCRDVKLHDL--PIADLTLKYGDLIT 48 (788)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 48 (788)
.-+|.+|.-|..|.+..| |+.|.+|.+|+.|.
T Consensus 25 ~sliPl~~~~~~vt~~Glky~L~~~~l~~g~~~s 58 (85)
T d1ig3a1 25 CGLIPVGQPCNQVTTTGLKWNLTNDVLGFGTLVS 58 (85)
T ss_dssp EEEECCSSCEEEEEEESBSSCCSSEEEBTTTBCE
T ss_pred EEEEECCCcceeEEEeCCEEeCCCCEEECCCccC
Confidence 567888888888888765 89999999999987
No 3
>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.60 E-value=66 Score=25.73 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=28.9
Q ss_pred eeeccccccccccCcccccccccccccchhhhccccceEEEeecCceeE
Q psy8432 20 IAYGSVCRDVKLHDLPIADLTLKYGDLITEVVACNTATVIRVNKSDIYL 68 (788)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (788)
|-.+.||.|....-.-.-||.++=|+.| .|||++..+-+|
T Consensus 20 l~~~~v~~~~~~~k~g~~dL~vk~GE~l---------dVIr~t~~~k~L 59 (77)
T d1ri9a_ 20 LYSTKVTTSITSKKWGTRDLQVKPGESL---------EVIQTTDDTKVL 59 (77)
T ss_dssp SSCCBCCTTSCSSCCCTTBCCCCTTCBC---------EEEEESSSSEEE
T ss_pred EEEEEEeeccccccCCcccCCcCCCCEE---------EEEEeCCCCeEE
Confidence 3457788887666666778888999876 478887766554
No 4
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.93 E-value=30 Score=29.98 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=36.2
Q ss_pred cccceeeeccccccccccC------cccccccccccccchhhhccccceEEEeecCcee--------------Eeeeccc
Q psy8432 15 MNYDIIAYGSVCRDVKLHD------LPIADLTLKYGDLITEVVACNTATVIRVNKSDIY--------------LHYQYEC 74 (788)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 74 (788)
.+.|||.-|.-|.+.-.-. -+..+|.+.+-++|.++ .+-...||-=|-..+- +-|+.+.
T Consensus 67 ~~~Dll~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~-~~kPk~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~ 145 (343)
T d1g55a_ 67 LSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRL-QKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQE 145 (343)
T ss_dssp HCCSEEEECCC------------------CHHHHHHHHGGGC-SSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred CCccEEEeecccccccccccccccccccccccchhhhhHhhh-cCCCceeeeeccCCcccchhhHHHHhhhhccccccce
Confidence 4789999999999875422 23344555555555443 2222333322322221 1133333
Q ss_pred c-----ccCccccccccccccCCCCC
Q psy8432 75 R-----RFSPFHQRERRFIFGPTEGV 95 (788)
Q Consensus 75 ~-----~~~~~~~~~~~~~~~~~~~~ 95 (788)
+ .|--=+.|+|-||+|-..|.
T Consensus 146 ~vlna~dyGvPQ~R~Rvfivg~r~~~ 171 (343)
T d1g55a_ 146 FLLSPTSLGIPNSRLRYFLIAKLQSE 171 (343)
T ss_dssp EEECGGGGTCSCCCCEEEEEEEESSS
T ss_pred eeeeccccCCcccceeEEEEEEeCCc
Confidence 3 33333689999999865554
No 5
>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}
Probab=12.91 E-value=12 Score=30.30 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=28.0
Q ss_pred eeccccccccccCcccccccccccccchhhhccccceEEEeecCcee
Q psy8432 21 AYGSVCRDVKLHDLPIADLTLKYGDLITEVVACNTATVIRVNKSDIY 67 (788)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (788)
.+|+-.+.++|++.+|.+-.+.-|+++.+|.+| -||.+|+-
T Consensus 11 ~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~------~i~~~D~~ 51 (175)
T d1gu7a1 11 QHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGS------PVNPSDIN 51 (175)
T ss_dssp SCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEE------EECHHHHH
T ss_pred cCCCcccccEEEEEECCCCCCCcCEEEEEEEEe------ccCcceeE
Confidence 356666666776655555567788898888877 35666764
No 6
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}
Probab=9.10 E-value=2.1e+02 Score=24.52 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=19.2
Q ss_pred ccccccccccceeeeccccccccc
Q psy8432 8 QTNEAGVMNYDIIAYGSVCRDVKL 31 (788)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~ 31 (788)
+.+...+...|||.-|.-|.+.-.
T Consensus 63 ~~~~~~~~~~Dll~ggpPCq~fS~ 86 (327)
T d2c7pa1 63 QVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp GSCGGGSCCCSEEEEECCCTTTCT
T ss_pred cCchhhcceeeeeecccccchhhh
Confidence 445566788999999999998754
No 7
>d2guya1 b.71.1.1 (A:382-476) Fungal alpha-amylase {Aspergillus oryzae, Taka-amylase [TaxId: 5062]}
Probab=7.76 E-value=58 Score=26.60 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=19.7
Q ss_pred CcccccccccccccchhhhccccceE
Q psy8432 33 DLPIADLTLKYGDLITEVVACNTATV 58 (788)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (788)
+|.|.+.-..=|+.++||+.|.+.||
T Consensus 39 tl~~~~~gy~~g~~v~dVlsC~~~tv 64 (95)
T d2guya1 39 TLSLSGAGYTAGQQLTEVIGCTTVTV 64 (95)
T ss_dssp EEEECCCCCCTTCEEEETTTTEEEEC
T ss_pred EEEecCcCCCCCCEEEEEeeeeEEEE
Confidence 45555556667899999999987765
No 8
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.51 E-value=67 Score=29.38 Aligned_cols=57 Identities=25% Similarity=0.204 Sum_probs=37.5
Q ss_pred cchhhhcccccc-ccccceeeeccccccccccCcccccccccccccchhh---hccccceEEEe
Q psy8432 2 RRNACAQTNEAG-VMNYDIIAYGSVCRDVKLHDLPIADLTLKYGDLITEV---VACNTATVIRV 61 (788)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 61 (788)
|+.+=-.|-+.| .|-..|+-+|...+++.+.| .||.|-|.|+-.-+ -.+--|||.||
T Consensus 13 ~~~~~~~tl~n~~~~~v~i~~~GA~i~~l~~~~---~~vvlg~d~~~~Y~~~~~~y~Ga~iGr~ 73 (342)
T d1z45a1 13 RYDARFVTIGAGTRFQATFANLGASIVDLKVNG---QSVVLGYENEEGYLNPDSAYIGATIGRY 73 (342)
T ss_dssp CTTSEEEEESTTSSEEEEEESBTTCEEEEEETT---EECBCCCSSHHHHTCTTCCCTTCEECSB
T ss_pred CceeEEEEEECCCceEEEEECCCeEEEEEEECC---eEEEeCCCCHHHHhcCCCceECCEeccc
Confidence 333333455555 38889999999999998865 58888887764321 23445677665
No 9
>d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]}
Probab=7.23 E-value=1e+02 Score=23.37 Aligned_cols=25 Identities=40% Similarity=0.401 Sum_probs=0.0
Q ss_pred cccccchhhhccccceEEEeecCceeEe
Q psy8432 42 KYGDLITEVVACNTATVIRVNKSDIYLH 69 (788)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (788)
.|.|.+-|+| |++|.|+....+++.
T Consensus 3 ef~~~~geiv---~G~V~r~~~~~~~Vd 27 (72)
T d1hh2p1 3 KYSELKGTVT---TAEVIRVMGEWADIR 27 (72)
T ss_dssp CTTCCTTCEE---EEEEEEECSSEEEEE
T ss_pred hHhhccCcEE---EEEEEEEcCCCEEEE
No 10
>d2aaaa1 b.71.1.1 (A:382-476) Fungal alpha-amylase {Aspergillus niger, acid amylase [TaxId: 5061]}
Probab=6.10 E-value=55 Score=26.67 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=0.0
Q ss_pred CcccccccccccccchhhhccccceE
Q psy8432 33 DLPIADLTLKYGDLITEVVACNTATV 58 (788)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (788)
+|.|...-..=|+.++||+.|.+.||
T Consensus 39 tl~~~~sgy~~g~~v~dvlsC~~~tv 64 (95)
T d2aaaa1 39 TLTLSGSGYTSGTKLIEAYTCTSVTV 64 (95)
T ss_dssp EEEECCCCCCTTCEEEETTTTEEEEC
T ss_pred EEEecCcCCCCCCEEEEEecceEEEE
Done!