BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8434
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D9I4|TBC20_MOUSE TBC1 domain family member 20 OS=Mus musculus GN=Tbc1d20 PE=2 SV=1
Length = 402
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 83/113 (73%)
Query: 1 YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
Y QV+LDV RSL+RFPPG+P EQR LQ++L +IL V+ P+L YYQGYHD+ +TFLL
Sbjct: 95 YQQVLLDVRRSLRRFPPGMPDEQREGLQEELIDIILLVLDRNPQLHYYQGYHDIVVTFLL 154
Query: 61 VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
VVGE A ++E LS HL + M TMD T ++LNY+ P++++ S +L +F++
Sbjct: 155 VVGERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVSPELHDFMQ 207
>sp|Q96BZ9|TBC20_HUMAN TBC1 domain family member 20 OS=Homo sapiens GN=TBC1D20 PE=1 SV=1
Length = 403
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 83/113 (73%)
Query: 1 YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
Y QV+LDV RSL+RFPPG+P EQR LQ++L +IL ++ P+L YYQGYHD+ +TFLL
Sbjct: 96 YQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLL 155
Query: 61 VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
VVGE A ++E LS HL + M TMD T ++LNY+ P++++ + +L +F++
Sbjct: 156 VVGERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQ 208
>sp|Q2T9Q1|TBC20_BOVIN TBC1 domain family member 20 OS=Bos taurus GN=TBC1D20 PE=2 SV=1
Length = 403
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 83/113 (73%)
Query: 1 YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
Y QV+LDV RSL+RFPPG+P EQR LQ++L +IL ++ P+L YYQGYHD+ +TFLL
Sbjct: 96 YQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLL 155
Query: 61 VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113
V+GE A ++E LS HL + M TMD T ++LNY+ P++++ + +L +F++
Sbjct: 156 VLGERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQ 208
>sp|P43570|GYP8_YEAST GTPase-activating protein GYP8 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=GYP8 PE=1 SV=1
Length = 497
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLV 61
QV+LD RS F + +L L+ L LI +V+ YP L YYQGYHD+ F++
Sbjct: 106 GQVILDAERS---FGGIVDKNLKLQLRKLLVELITRVLRKYPTLNYYQGYHDIVSVFIMC 162
>sp|O94661|GYP10_SCHPO GTPase-activating protein gyp10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=gyp10 PE=4 SV=1
Length = 373
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 2 SQVVLDVNRSLKRFP--PGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFL 59
+QV LD RS ++ P + + R QLT L+ V YP L YYQG HD+A L
Sbjct: 73 NQVHLDSERSFFQYKLNPFLLRKHR----SQLTKLLSVVFKHYPELCYYQGLHDIAQILL 128
Query: 60 LVVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFL 112
L + A ++E L L + M T+D T L + ++ R L E+L
Sbjct: 129 LTLPFSHALPLMEHLVFYRLRDFMLPTLDGTVKQLQLILAVIKARDPTLYEYL 181
>sp|Q55EP9|BUB2_DICDI Putative mitotic check point protein BUB2 OS=Dictyostelium
discoideum GN=bub2 PE=3 SV=1
Length = 366
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 1 YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
Y ++ D+ R+ R Q ++ QDQL+ + H L Y QG + + TFL
Sbjct: 99 YQKIRKDIGRTFNR---DSQFSQAVS-QDQLSRCLNAFAHQCEELGYVQGMNAICGTFLY 154
Query: 61 VVGEMKAFRIL 71
V+ E++AF+
Sbjct: 155 VLPEVEAFQCF 165
>sp|Q54VM3|TBC5A_DICDI TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum
GN=tbc1d5A PE=1 SV=1
Length = 1173
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 7 DVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVV 62
+++ + R PG+ +RL +QD + ++ YP+++Y QG +++ L V
Sbjct: 472 EISHDISRTYPGLGFFERLDIQDIMIRILFIFSKQYPKIKYLQGMNEILAPILYSV 527
>sp|Q723X5|INLI_LISMF Internalin-I OS=Listeria monocytogenes serotype 4b (strain F2365)
GN=inlI PE=3 SV=1
Length = 1775
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 19 IPIEQRLAL-QDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSND 77
+P ++L L ++QLT + I+ PRL Y DV++ +L +GE+K +LE L+
Sbjct: 430 LPKLEKLDLKENQLT--SISEINDLPRLSYL----DVSVNYLTTIGELKKLPLLEWLNVS 483
Query: 78 HLSENMRDTMDETSY-VLNYM 97
S + D T++ LNY+
Sbjct: 484 --SNRLSDVSTLTNFPSLNYI 502
>sp|B4PYH5|MOCOS_DROYA Molybdenum cofactor sulfurase OS=Drosophila yakuba GN=mal PE=3 SV=1
Length = 780
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 40 HAYP-------RLRYYQGYHDVAITFLLVVGEMKAFRILEVL 74
+AYP R ++Q Y D + FL +VG ++ FR LE L
Sbjct: 280 YAYPHAMDYQLRETFHQRYEDGTLPFLAIVGLLEGFRTLERL 321
>sp|B3MZN7|MOCOS_DROAN Molybdenum cofactor sulfurase OS=Drosophila ananassae GN=mal PE=3
SV=1
Length = 773
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 40 HAYP-------RLRYYQGYHDVAITFLLVVGEMKAFRILE 72
+AYP R ++Q Y D + FL +VG ++ FR LE
Sbjct: 277 YAYPHTMEYQLRESFHQRYEDGTLPFLAIVGLLEGFRTLE 316
>sp|Q9VRA2|MOCOS_DROME Molybdenum cofactor sulfurase OS=Drosophila melanogaster GN=mal
PE=1 SV=1
Length = 781
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 40 HAYP-------RLRYYQGYHDVAITFLLVVGEMKAFRILEVL 74
+AYP R ++Q Y D + FL +VG ++ FR LE L
Sbjct: 280 YAYPHAMDYQLRETFHQRYEDGTLPFLSIVGLLEGFRTLERL 321
>sp|A9GPH2|GLYA_SORC5 Serine hydroxymethyltransferase OS=Sorangium cellulosum (strain
So ce56) GN=glyA PE=3 SV=1
Length = 423
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 24 RLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLS 80
R L+ ++L K YP RYY+G V VV E+ R+ ++ DH++
Sbjct: 46 RAVLEATGSVLTNKYSEGYPHKRYYEGQQQVD-----VVEELARTRVAKLFGADHVN 97
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.142 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,447,160
Number of Sequences: 539616
Number of extensions: 1296217
Number of successful extensions: 4298
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4291
Number of HSP's gapped (non-prelim): 14
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)