Query psy8434
Match_columns 114
No_of_seqs 104 out of 441
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 18:45:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2595|consensus 100.0 4E-33 8.8E-38 214.5 11.2 114 1-114 97-210 (395)
2 KOG2058|consensus 100.0 7.3E-33 1.6E-37 220.1 9.4 111 2-114 198-310 (436)
3 smart00164 TBC Domain in Tre-2 100.0 9.8E-30 2.1E-34 182.4 10.1 110 2-113 48-158 (199)
4 COG5210 GTPase-activating prot 99.9 1.1E-27 2.4E-32 193.8 7.5 111 2-114 258-370 (496)
5 PF00566 RabGAP-TBC: Rab-GTPas 99.9 5E-25 1.1E-29 158.3 10.3 109 2-114 48-157 (214)
6 KOG4347|consensus 99.8 1.3E-21 2.8E-26 160.1 7.3 109 1-113 244-352 (671)
7 KOG4567|consensus 99.8 2.2E-20 4.8E-25 143.1 5.1 112 2-114 122-271 (370)
8 KOG2221|consensus 99.8 4.7E-20 1E-24 135.7 4.8 110 2-113 144-253 (267)
9 KOG2222|consensus 99.8 7.8E-20 1.7E-24 146.9 5.0 111 2-114 213-324 (848)
10 KOG1092|consensus 99.7 6.2E-18 1.3E-22 133.7 8.6 109 1-114 244-378 (484)
11 KOG2223|consensus 99.7 1.1E-17 2.3E-22 133.0 7.3 110 2-114 357-467 (586)
12 KOG1093|consensus 99.7 9.9E-17 2.1E-21 130.8 9.7 108 2-113 392-502 (725)
13 KOG4436|consensus 99.7 1.1E-16 2.3E-21 133.9 7.6 110 2-113 623-733 (948)
14 KOG2197|consensus 99.7 2.8E-17 6.2E-22 133.3 2.4 110 2-114 239-349 (488)
15 KOG1102|consensus 99.6 6.6E-17 1.4E-21 128.4 2.0 109 3-114 188-296 (397)
16 KOG2224|consensus 99.3 9.7E-13 2.1E-17 105.4 4.7 107 3-114 498-635 (781)
17 KOG1091|consensus 99.2 1.7E-11 3.7E-16 100.1 5.5 110 2-114 106-271 (625)
18 KOG4436|consensus 98.5 1.2E-07 2.6E-12 80.4 3.7 111 3-113 230-347 (948)
19 KOG1648|consensus 91.5 0.0055 1.2E-07 50.8 -5.7 97 3-105 609-711 (813)
20 PF14483 Cut8_M: Cut8 dimerisa 68.0 4 8.7E-05 22.1 1.5 19 28-46 12-30 (38)
21 KOG3636|consensus 65.2 9.3 0.0002 31.9 3.7 80 30-114 94-176 (669)
22 KOG2801|consensus 64.4 23 0.00049 28.2 5.6 46 25-70 108-154 (559)
23 PF14842 FliG_N: FliG N-termin 52.7 14 0.00031 24.0 2.4 23 55-77 11-33 (108)
24 PF03378 CAS_CSE1: CAS/CSE pro 51.8 60 0.0013 26.5 6.3 61 27-87 175-240 (435)
25 KOG2224|consensus 47.1 9.4 0.0002 31.8 1.0 21 64-85 558-578 (781)
26 PRK10378 inactive ferrous ion 47.0 18 0.00039 29.1 2.5 60 47-113 260-321 (375)
27 PF10625 UspB: Universal stres 43.8 57 0.0012 21.6 4.1 19 93-111 25-43 (107)
28 PF08109 Antimicrobial14: Lact 41.0 13 0.00029 18.7 0.6 10 46-55 4-13 (31)
29 COG5460 Uncharacterized conser 39.7 33 0.00072 21.6 2.4 26 47-72 51-77 (82)
30 PF03937 Sdh5: Flavinator of s 38.7 49 0.0011 20.1 3.1 21 92-112 35-55 (74)
31 PF12644 DUF3782: Protein of u 38.3 52 0.0011 19.0 3.1 27 31-57 32-61 (64)
32 PRK04960 universal stress prot 37.1 63 0.0014 21.6 3.5 18 93-110 25-42 (111)
33 smart00667 LisH Lissencephaly 34.2 60 0.0013 15.5 3.6 24 28-58 3-26 (34)
34 PF09751 Es2: Nuclear protein 33.9 71 0.0015 25.8 4.1 42 61-107 5-46 (414)
35 PF15110 TMEM141: TMEM141 prot 30.4 1.4E+02 0.003 19.4 4.2 55 31-86 3-60 (94)
36 PRK15322 invasion protein OrgB 30.2 1.3E+02 0.0027 22.5 4.5 54 45-99 46-101 (210)
37 PF14225 MOR2-PAG1_C: Cell mor 25.0 3.1E+02 0.0067 20.8 6.5 14 92-105 207-220 (262)
38 PF14679 FANCI_HD1: FANCI heli 24.3 1.9E+02 0.0041 18.4 4.0 30 53-82 24-57 (87)
39 KOG4305|consensus 24.1 1E+02 0.0022 28.3 3.6 30 79-108 470-499 (1029)
40 COG4508 Dimeric dUTPase [Carbo 23.2 58 0.0012 22.9 1.6 15 47-61 68-82 (161)
41 cd01388 SOX-TCF_HMG-box SOX-TC 22.7 1.7E+02 0.0038 17.1 4.1 30 19-48 43-72 (72)
42 PF06685 DUF1186: Protein of u 22.3 3.5E+02 0.0076 20.5 7.0 51 52-102 59-121 (249)
43 cd07029 RNAP_I_III_AC19 AC19 s 21.9 78 0.0017 19.9 1.9 18 31-48 22-39 (85)
44 PF08225 Antimicrobial19: Pseu 21.5 67 0.0015 15.2 1.2 9 48-56 9-17 (23)
45 KOG0166|consensus 21.4 2.4E+02 0.0053 23.8 5.2 40 67-109 215-254 (514)
46 PRK10878 hypothetical protein; 21.1 1E+02 0.0022 18.9 2.2 21 92-112 22-42 (72)
47 PF10274 ParcG: Parkin co-regu 20.8 3.4E+02 0.0073 19.7 6.4 49 48-100 59-107 (183)
No 1
>KOG2595|consensus
Probab=100.00 E-value=4e-33 Score=214.47 Aligned_cols=114 Identities=54% Similarity=0.892 Sum_probs=111.6
Q ss_pred CccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHhhhh
Q psy8434 1 YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLS 80 (114)
Q Consensus 1 ~~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~l~ 80 (114)
|.||.+||+|||..||.++++++|..+|++|..+|..++.+||.++||||+||||.+||+|++|.+|+.+++.|+..++|
T Consensus 97 ~nQV~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~gE~~Al~l~E~L~~~~lr 176 (395)
T KOG2595|consen 97 YNQVILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVGELEALSLMEELSTLHLR 176 (395)
T ss_pred cceEEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhhhHhhhHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434 81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114 (114)
Q Consensus 81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~ 114 (114)
|||.++|+++.+.++++.++++++||+||++|++
T Consensus 177 dfM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~ 210 (395)
T KOG2595|consen 177 DFMLPTLDFTVRQLRLISPIIKEVNPELYQFLQS 210 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHh
Confidence 9999999999999999999999999999999874
No 2
>KOG2058|consensus
Probab=99.98 E-value=7.3e-33 Score=220.10 Aligned_cols=111 Identities=21% Similarity=0.225 Sum_probs=102.5
Q ss_pred ccccccccccCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhC-hhhHHHHHHHHHHhhh
Q psy8434 2 SQVVLDVNRSLKRF-PPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVG-EMKAFRILEVLSNDHL 79 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~-~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~-E~~af~~~~~L~~~~l 79 (114)
+||+.|+.||||.. +.+..++ ..++++|.|||.||+++||.+|||||||++||++|++|+ ||+|||+|..++.+++
T Consensus 198 ~qI~~DL~RTfP~n~~~~~~~~--~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~l 275 (436)
T KOG2058|consen 198 KQIKLDLPRTFPDNFKGFDSED--SDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYL 275 (436)
T ss_pred HHHHhccccccCCCcccCCCCC--chHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhc
Confidence 69999999999987 5554433 335899999999999999999999999999999999998 9999999999999999
Q ss_pred hhhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434 80 SENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114 (114)
Q Consensus 80 ~d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~ 114 (114)
++||+++|.|++.++.++..||+..+|+|+.||+.
T Consensus 276 p~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~ 310 (436)
T KOG2058|consen 276 PRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEG 310 (436)
T ss_pred hhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhh
Confidence 99999999999999999999999999999999863
No 3
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=99.96 E-value=9.8e-30 Score=182.38 Aligned_cols=110 Identities=23% Similarity=0.172 Sum_probs=100.4
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhC-hhhHHHHHHHHHHhhhh
Q psy8434 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVG-EMKAFRILEVLSNDHLS 80 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~-E~~af~~~~~L~~~~l~ 80 (114)
+||++||.||++..+.+... .+..++.|.|||.+|+..||++|||||||+|||+++++++ |++|||++..++..+.+
T Consensus 48 ~~I~~Dv~Rt~~~~~~f~~~--~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~ 125 (199)
T smart00164 48 HQIEKDLRRTFPEHSFFQDK--EGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGP 125 (199)
T ss_pred HHHhcccCCCCCCchhhcCC--CcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCc
Confidence 68999999999887765331 2358899999999999999999999999999999999994 99999999999998888
Q ss_pred hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhh
Q psy8434 81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113 (114)
Q Consensus 81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~ 113 (114)
.+|.++++++...+.++..+++..||+|++||+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~ 158 (199)
T smart00164 126 NFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLK 158 (199)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 888999999999999999999999999999996
No 4
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.94 E-value=1.1e-27 Score=193.85 Aligned_cols=111 Identities=23% Similarity=0.204 Sum_probs=99.8
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhC-hhhHHHHHHHHHH-hhh
Q psy8434 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVG-EMKAFRILEVLSN-DHL 79 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~-E~~af~~~~~L~~-~~l 79 (114)
+||++||.||++.++.+..+... ..+.|.|||.+|+.+||++|||||||+|||+||++|. |++||||+.+|+. .++
T Consensus 258 ~~i~~Dl~rt~~~~~~f~~~~s~--~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l 335 (496)
T COG5210 258 SQIEKDLSRTFPDNSLFQTEISI--RAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGL 335 (496)
T ss_pred HHHHccccccccccccccCcccc--cHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccc
Confidence 68999999999988766443211 1134999999999999999999999999999999999 9999999999999 579
Q ss_pred hhhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434 80 SENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114 (114)
Q Consensus 80 ~d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~ 114 (114)
+++|.++++|+..++..+..+++..+|++|+||++
T Consensus 336 ~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~ 370 (496)
T COG5210 336 PGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLR 370 (496)
T ss_pred hhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999974
No 5
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.92 E-value=5e-25 Score=158.27 Aligned_cols=109 Identities=25% Similarity=0.296 Sum_probs=97.2
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHH-hChhhHHHHHHHHHHhhhh
Q psy8434 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLV-VGEMKAFRILEVLSNDHLS 80 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv-~~E~~af~~~~~L~~~~l~ 80 (114)
+||.+||.||+++.+.+. .+..++.|.|||.+|+..||++||+||||+||++++++ .+|++||||++.++...++
T Consensus 48 ~~I~~Dv~rt~~~~~~~~----~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~ 123 (214)
T PF00566_consen 48 EQIDKDVNRTFPNSFLFK----NEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLP 123 (214)
T ss_dssp HHHHHHHCTSSTSCCCST----THHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGG
T ss_pred HHHHHhhhhhcccchhhh----hcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhccccc
Confidence 589999999998444443 34588999999999999999999999999999999955 5789999999999988999
Q ss_pred hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434 81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114 (114)
Q Consensus 81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~ 114 (114)
+++.++..++...+..+..+++..+|++++||++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~ 157 (214)
T PF00566_consen 124 DFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQ 157 (214)
T ss_dssp GGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccchhhhhHHHHHHhhhhhhhhhhhh
Confidence 9999999999999999999999999999999863
No 6
>KOG4347|consensus
Probab=99.85 E-value=1.3e-21 Score=160.15 Aligned_cols=109 Identities=22% Similarity=0.192 Sum_probs=102.6
Q ss_pred CccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHhhhh
Q psy8434 1 YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLS 80 (114)
Q Consensus 1 ~~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~l~ 80 (114)
++.|++|.+||+|.+|.+.+++ +-..|.|||.||+++||++||||-||-|++.+++++.||.|||++.++++.+++
T Consensus 244 ~eEIE~Dl~rsLpEhpA~Q~e~----gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~~EEeafwll~~lce~~ip 319 (671)
T KOG4347|consen 244 TEEIEPDLGRSLPEHPAFQSEP----GIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFCKEEEAFWLLSKLCEIYIP 319 (671)
T ss_pred cccccCCCCCCCCcchhhhCCC----chhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhhccchHHHHHHHHHHHhcc
Confidence 3679999999999999885554 567788899999999999999999999999999999999999999999999999
Q ss_pred hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhh
Q psy8434 81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113 (114)
Q Consensus 81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~ 113 (114)
+|+..++-|+.-++.+...|++...|.+++|+.
T Consensus 320 ~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~ 352 (671)
T KOG4347|consen 320 DYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLA 352 (671)
T ss_pred cccchhhhhhHHHHHHHHHHHHHhhhHHHHHhh
Confidence 999999999999999999999999999999986
No 7
>KOG4567|consensus
Probab=99.81 E-value=2.2e-20 Score=143.08 Aligned_cols=112 Identities=19% Similarity=0.261 Sum_probs=89.4
Q ss_pred ccccccccccCCCCCCCC-----------CHHH------------HHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHH
Q psy8434 2 SQVVLDVNRSLKRFPPGI-----------PIEQ------------RLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITF 58 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~-----------~~~~------------~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~l 58 (114)
.||++||.||.|..+.+. .... .+..+....|||..||+.||+++|+||||.|+|++
T Consensus 122 ~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPi 201 (370)
T KOG4567|consen 122 LQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPI 201 (370)
T ss_pred HHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhh
Confidence 599999999988532210 0000 02233456789999999999999999999999999
Q ss_pred HHHh-----------ChhhHHHHHHHHHHhhhhhhhhcChHH----HHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434 59 LLVV-----------GEMKAFRILEVLSNDHLSENMRDTMDE----TSYVLNYMFPLVNKRSSDLCEFLER 114 (114)
Q Consensus 59 Llv~-----------~E~~af~~~~~L~~~~l~d~~~~~l~~----~~~~l~~l~~ll~~~dp~L~~~L~~ 114 (114)
.+|+ -|++||.||..||- -+||+|.++++. +...+.-+..+|+..|-+||+||++
T Consensus 202 YYVfa~Dpd~e~~~~aEaDaFFCF~~LMs-eirDnf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~ 271 (370)
T KOG4567|consen 202 YYVFANDPDEENRAYAEADAFFCFTQLMS-EIRDNFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEE 271 (370)
T ss_pred heeeccCCchhhHHhhhhhHHHHHHHHHH-HHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 9998 26899999999975 689999998874 4466788999999999999999974
No 8
>KOG2221|consensus
Probab=99.80 E-value=4.7e-20 Score=135.67 Aligned_cols=110 Identities=14% Similarity=0.066 Sum_probs=102.8
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHhhhhh
Q psy8434 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLSE 81 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~l~d 81 (114)
+-|++|.+|-|+.+..+-+. .+.+++.|+|+|.||...+|+.|||||-..||+++|+.+++++||||++..+..++++
T Consensus 144 e~i~kdl~rqfp~hemf~s~--~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp~rdaf~~~vqicekylqg 221 (267)
T KOG2221|consen 144 EGIHKDLHRQFPFHEMFGSS--GKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMPARDAFWCFVQICEKYLQG 221 (267)
T ss_pred hhhccccccCCCcccccccc--cccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhcccHHHHHHHHHHHHHHHccc
Confidence 45899999999988777554 4567999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcChHHHHHHHHHHHHHHHhhCHHHHHHhh
Q psy8434 82 NMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113 (114)
Q Consensus 82 ~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~ 113 (114)
||.++++.++.+-.+|..|++..+|-.+.|+.
T Consensus 222 y~~sgleaiq~dg~il~~Llkk~~~p~~rH~~ 253 (267)
T KOG2221|consen 222 YYSSGLEAIQNDGGILEGLLKKASPPPYRHLG 253 (267)
T ss_pred ccccchhhhhcccHHHHHHHHhcCCCCCcccc
Confidence 99999999999999999999999999999885
No 9
>KOG2222|consensus
Probab=99.79 E-value=7.8e-20 Score=146.90 Aligned_cols=111 Identities=22% Similarity=0.205 Sum_probs=99.3
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHhhhh-
Q psy8434 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLS- 80 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~l~- 80 (114)
.||++|+-|++|+..-+.. ..+.+-.+|.|||.++++..|++||||||-.|+|.+|++|.||.|||+|..++...+|
T Consensus 213 ~qiekdllr~lpnn~cf~k--~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~ee~afwmmaaiiedilp~ 290 (848)
T KOG2222|consen 213 KQIEKDLLRILPNNACFSK--KNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCEEENAFWMMAAIIEDILPA 290 (848)
T ss_pred HHHHHHHHHhCCCcceeeC--CCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhcchhHHHHHHHHHHHhcCc
Confidence 4999999999987654433 2345778899999999999999999999999999999999999999999999998775
Q ss_pred hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434 81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114 (114)
Q Consensus 81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~ 114 (114)
.||++++-|++.+.++.+.|++-.-|+|-+.|++
T Consensus 291 nfysqtllgiqaderv~~~li~~~l~~ldeal~~ 324 (848)
T KOG2222|consen 291 NFYSQTLLGIQADERVMHHLIACHLPDLDEALED 324 (848)
T ss_pred hhhhhhHhccchhHHHHHHHHHhccCchhHHHHh
Confidence 8889999999999999999999999999887763
No 10
>KOG1092|consensus
Probab=99.74 E-value=6.2e-18 Score=133.66 Aligned_cols=109 Identities=21% Similarity=0.287 Sum_probs=98.5
Q ss_pred CccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHh------C-----------
Q psy8434 1 YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVV------G----------- 63 (114)
Q Consensus 1 ~~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~------~----------- 63 (114)
|+||..|++|+.++-+.+ +....|+.|.|||..++.+||..||.||.||.+.+++.++ +
T Consensus 244 ~rQI~id~prm~p~~~l~----q~~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~ 319 (484)
T KOG1092|consen 244 WRQIPIDIPRMNPHIPLF----QQKIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSL 319 (484)
T ss_pred ccccccCCCCCCccccch----hhHHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhh
Confidence 689999999999887665 4456899999999999999999999999999999998875 1
Q ss_pred ---------hhhHHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434 64 ---------EMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114 (114)
Q Consensus 64 ---------E~~af~~~~~L~~~~l~d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~ 114 (114)
|++||||+.+|.. .+.|.|.-.-+|+++..+-|..|++++|++|++||+.
T Consensus 320 l~~E~~~~iEADsyWClskLLD-~IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~ 378 (484)
T KOG1092|consen 320 LPAENAEDIEADAYWCLSKLLD-GIQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQE 378 (484)
T ss_pred ccHHHHhhhhhhHHHHHHHHHH-HhhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 4689999999975 6899999999999999999999999999999999974
No 11
>KOG2223|consensus
Probab=99.72 E-value=1.1e-17 Score=133.02 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=99.0
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHh-hhh
Q psy8434 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSND-HLS 80 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~-~l~ 80 (114)
.+|++|+.||||++..|. +.+..++-|..||-||..+.|++||+|||.+|||++|+-|++..||.+|..|.+. ...
T Consensus 357 ~~i~LDisrTfpsl~iFq---k~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd~~~AFiafANLLdkp~q~ 433 (586)
T KOG2223|consen 357 ELIKLDISRTFPSLSIFQ---KGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMDLADAFIAFANLLDKPCQQ 433 (586)
T ss_pred hheeechhccCcceeeec---cCCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcCCcHHHHHHHHHHhccHHHH
Confidence 479999999999877663 3467889999999999999999999999999999999999999999999999985 567
Q ss_pred hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434 81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114 (114)
Q Consensus 81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~ 114 (114)
.||.-+-+.......-+...+++-.|+|+.||.+
T Consensus 434 Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~k 467 (586)
T KOG2223|consen 434 AFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKK 467 (586)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 8998888888888889999999999999999864
No 12
>KOG1093|consensus
Probab=99.69 E-value=9.9e-17 Score=130.78 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=96.9
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHh--ChhhHHHHHHHHHHhhh
Q psy8434 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVV--GEMKAFRILEVLSNDHL 79 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~--~E~~af~~~~~L~~~~l 79 (114)
+||++||+|++.+...-++. .+++.|.|+|.||+..+|...|+||...+|++||+.. +|..||.|+..+..+++
T Consensus 392 rqievdiprchQyd~~lsSp----~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kyc 467 (725)
T KOG1093|consen 392 RQIEVDIPRCHQYDELLSSP----KGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYC 467 (725)
T ss_pred hhhhcccchhhhcccccCCH----HHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHH
Confidence 69999999999865444443 3888999999999999999999999999999999875 69999999999999999
Q ss_pred hhhhhcChHHH-HHHHHHHHHHHHhhCHHHHHHhh
Q psy8434 80 SENMRDTMDET-SYVLNYMFPLVNKRSSDLCEFLE 113 (114)
Q Consensus 80 ~d~~~~~l~~~-~~~l~~l~~ll~~~dp~L~~~L~ 113 (114)
..||.++.+.+ ++.+.++..+++..||+|++||.
T Consensus 468 q~fflkdns~vikeyLs~f~~l~AfhDpeL~qHl~ 502 (725)
T KOG1093|consen 468 QHFFLKDNSNVIKEYLSMFSQLLAFHDPELLQHLI 502 (725)
T ss_pred HHHHhhcCchhHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999977766 59999999999999999999985
No 13
>KOG4436|consensus
Probab=99.67 E-value=1.1e-16 Score=133.93 Aligned_cols=110 Identities=25% Similarity=0.281 Sum_probs=102.0
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHh-hhh
Q psy8434 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSND-HLS 80 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~-~l~ 80 (114)
+.|..|.-||||++|.+. .+.+.+|..|.|+|.||.-.+|++|||||..+||+++|+.|+|+.||.++.-||.. .+|
T Consensus 623 hAi~idlgrtfp~h~~~~--~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~e~~afellk~LM~~r~~r 700 (948)
T KOG4436|consen 623 HAILIDLGRTFPTHPYFS--DQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMSEENAFELLKFLMFDRGMR 700 (948)
T ss_pred HHHHHhhccccCCCHHHH--hhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcchhhHHHHHHHHHHHHhhH
Confidence 358899999999998763 36788999999999999999999999999999999999999999999999999974 678
Q ss_pred hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhh
Q psy8434 81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113 (114)
Q Consensus 81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~ 113 (114)
.=|.|+|...+-.+.-+..+++-+.|+||+||+
T Consensus 701 ~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le 733 (948)
T KOG4436|consen 701 KQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLE 733 (948)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 889999999999999999999999999999997
No 14
>KOG2197|consensus
Probab=99.66 E-value=2.8e-17 Score=133.30 Aligned_cols=110 Identities=23% Similarity=0.245 Sum_probs=93.5
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHh-ChhhHHHHHHHHHHhhhh
Q psy8434 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVV-GEMKAFRILEVLSNDHLS 80 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~-~E~~af~~~~~L~~~~l~ 80 (114)
..|.+||.||-..+......+. .....|.+||.+|...|+++||||||+|.+++++.++ +|.+||||++.++.. ++
T Consensus 239 ~~i~~dv~rtDr~~~~~~~~~n--~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~-~~ 315 (488)
T KOG2197|consen 239 SRIEKDVGRTDRSLEFYEGEEN--PHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDR-LR 315 (488)
T ss_pred hhhhhhccccchhhhhhhcccc--cCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHH-Hh
Confidence 3588999999987654422211 2367899999999999999999999999999999998 588999999999875 55
Q ss_pred hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434 81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114 (114)
Q Consensus 81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~ 114 (114)
..|..+..+...++..+..+++..||.+++||+.
T Consensus 316 ~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~ 349 (488)
T KOG2197|consen 316 HNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEK 349 (488)
T ss_pred hcCccccccHHHHhhhhhhhccccCHHHHhhccc
Confidence 6677888899999999999999999999999963
No 15
>KOG1102|consensus
Probab=99.63 E-value=6.6e-17 Score=128.38 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=97.6
Q ss_pred cccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHhhhhhh
Q psy8434 3 QVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLSEN 82 (114)
Q Consensus 3 QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~l~d~ 82 (114)
|| +|+.|||+..-.+ .+..+.+|++|.+|+.+|+..+|++||||||..+|++++++++||+|||++..++...-++.
T Consensus 188 ~~-~d~~Rt~~~~~~f--~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~ee~af~~lv~l~~~~~~~~ 264 (397)
T KOG1102|consen 188 II-RDLSRTFPAHLLF--RKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLPEEEAFPLLVKLMKNYGLDL 264 (397)
T ss_pred HH-hhccCcCcchhhh--hhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCchhhhhhhhhhhhhccchhc
Confidence 55 9999999865443 22467899999999999999999999999999999999999999999999999998755777
Q ss_pred hhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434 83 MRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114 (114)
Q Consensus 83 ~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~ 114 (114)
+.++++++......+..+++..-|+++.|+.+
T Consensus 265 ~~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~ 296 (397)
T KOG1102|consen 265 LSPGFSGLQRSFRQLQRLLKELIPKLLDHLLP 296 (397)
T ss_pred ccccCCchhhhHHHHHHHHHHhChhhhhhccc
Confidence 79999999999999999999999999999853
No 16
>KOG2224|consensus
Probab=99.34 E-value=9.7e-13 Score=105.43 Aligned_cols=107 Identities=20% Similarity=0.197 Sum_probs=72.7
Q ss_pred cccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHH----------------------
Q psy8434 3 QVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL---------------------- 60 (114)
Q Consensus 3 QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLl---------------------- 60 (114)
.|+|||-||-.+.|.+-.+ -+..-++..|||..|+++||.+||-|||.|+.|+.|-
T Consensus 498 tvdkdvvrtdrnn~ff~gd--dnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdl 575 (781)
T KOG2224|consen 498 TVDKDVVRTDRNNPFFCGD--DNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDL 575 (781)
T ss_pred EEecceeeccCCCCcccCC--CCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhh
Confidence 3789999999876654222 1234467888999999999999999666655555442
Q ss_pred -------HhChhhHHHHHHHHHHhhhhhhhh--cChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434 61 -------VVGEMKAFRILEVLSNDHLSENMR--DTMDETSYVLNYMFPLVNKRSSDLCEFLER 114 (114)
Q Consensus 61 -------v~~E~~af~~~~~L~~~~l~d~~~--~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~ 114 (114)
|++|.++||||+-|+.+ .||- |.=+.....+-.+.+|++...|..|+||++
T Consensus 576 vapilaevldesdtfwcfvglmqn---a~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q 635 (781)
T KOG2224|consen 576 VAPILAEVLDESDTFWCFVGLMQN---AFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQ 635 (781)
T ss_pred hhhHHHhhhccccchhhhhhhhcc---eEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHH
Confidence 33555566666555542 2221 222333457778899999999999999974
No 17
>KOG1091|consensus
Probab=99.21 E-value=1.7e-11 Score=100.07 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=82.9
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHh----------C--------
Q psy8434 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVV----------G-------- 63 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~----------~-------- 63 (114)
+.|..||.||||..- .+-+....|..|.|||..|+.+||+++|-||||.+.|++++|. .
T Consensus 106 ~~i~qDvsRtfPe~~---~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~ 182 (625)
T KOG1091|consen 106 KTIDQDVSRTFPEHS---LFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLG 182 (625)
T ss_pred HhhcchhhccCcchh---hhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcC
Confidence 468999999997652 2224556888999999999999999999999999999999985 1
Q ss_pred --hhh-----------HH--HHHHHHHHh--h---------------------hhhhhhcChHHHHHHHHHHHHHHHhhC
Q psy8434 64 --EMK-----------AF--RILEVLSND--H---------------------LSENMRDTMDETSYVLNYMFPLVNKRS 105 (114)
Q Consensus 64 --E~~-----------af--~~~~~L~~~--~---------------------l~d~~~~~l~~~~~~l~~l~~ll~~~d 105 (114)
|.+ +. .++..++.. + +.|-+.++++.+.........+++.+|
T Consensus 183 f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D 262 (625)
T KOG1091|consen 183 FEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVD 262 (625)
T ss_pred cchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhcc
Confidence 111 22 233344320 1 124456678888899999999999999
Q ss_pred HHHHHHhhC
Q psy8434 106 SDLCEFLER 114 (114)
Q Consensus 106 p~L~~~L~~ 114 (114)
+.|+.||.+
T Consensus 263 ~~Lh~HL~~ 271 (625)
T KOG1091|consen 263 KSLHSHLVE 271 (625)
T ss_pred HHHHHHHHh
Confidence 999999963
No 18
>KOG4436|consensus
Probab=98.47 E-value=1.2e-07 Score=80.44 Aligned_cols=111 Identities=16% Similarity=0.010 Sum_probs=92.0
Q ss_pred cccccccccCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHh
Q psy8434 3 QVVLDVNRSLKRFPPGIPIE-----QRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSND 77 (114)
Q Consensus 3 QI~~Dv~Rt~~~~~~~~~~~-----~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~ 77 (114)
-|..|++||.+.+..+...+ ...-.++.|+|+..+|+.+.-+++||||=+++++.++++++||.||.+...++..
T Consensus 230 ~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~~E~assv~~~lm~~ 309 (948)
T KOG4436|consen 230 IIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMPVEEASSVKVQLMIL 309 (948)
T ss_pred HHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 37789999987654332111 1234699999999999999999999999999999999999999999999999975
Q ss_pred -hhhhhhhcChHHHHHHHHHHHHHHHhhCH-HHHHHhh
Q psy8434 78 -HLSENMRDTMDETSYVLNYMFPLVNKRSS-DLCEFLE 113 (114)
Q Consensus 78 -~l~d~~~~~l~~~~~~l~~l~~ll~~~dp-~L~~~L~ 113 (114)
.++.-+.|.|..+-..+.-+....+...| +++.|+.
T Consensus 310 ~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~ 347 (948)
T KOG4436|consen 310 YRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFP 347 (948)
T ss_pred hcccccCCcccchhHHHHHhhcccccccchhHHhhccc
Confidence 68999999999887777777777788888 8888864
No 19
>KOG1648|consensus
Probab=91.47 E-value=0.0055 Score=50.83 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=58.3
Q ss_pred cccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHh-ChhhHHHHHHHHHH---hh
Q psy8434 3 QVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVV-GEMKAFRILEVLSN---DH 78 (114)
Q Consensus 3 QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~-~E~~af~~~~~L~~---~~ 78 (114)
-|.+|+.|+-.+...|++.+..++ .++...|..+|=+-||+|||-|+.++++-.+ +|.....|+.-++. .+
T Consensus 609 ~~~kd~e~~~~~~~~fs~~~~les-----~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~~~ 683 (813)
T KOG1648|consen 609 RIDKDVERCDRNLMFFSNKDNLES-----RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQRGK 683 (813)
T ss_pred eecchhhhCcchheeecCCcchhh-----heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHhccc
Confidence 478899887655444433322212 4577888899999999999999999976555 33333334444443 23
Q ss_pred h--hhhhhcChHHHHHHHHHHHHHHHhhC
Q psy8434 79 L--SENMRDTMDETSYVLNYMFPLVNKRS 105 (114)
Q Consensus 79 l--~d~~~~~l~~~~~~l~~l~~ll~~~d 105 (114)
+ ++-|.+.+..+. ...+...|+..+|
T Consensus 684 ~~q~~~~~~~l~~~r-~~~v~~~l~s~id 711 (813)
T KOG1648|consen 684 FPQRPGMSKCLLNLR-LIQVVDPLISDID 711 (813)
T ss_pred CCCCCCccccccccc-chhhhcchhcchh
Confidence 3 344555554433 4455555555444
No 20
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=68.01 E-value=4 Score=22.07 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHCCCCc
Q psy8434 28 QDQLTLLILKVIHAYPRLR 46 (114)
Q Consensus 28 ~~~L~~iL~a~~~~~p~l~ 46 (114)
+++|..+|.....+||+++
T Consensus 12 ~~qL~~lL~~l~~~HPei~ 30 (38)
T PF14483_consen 12 KDQLQSLLQSLCERHPEIQ 30 (38)
T ss_dssp HHHHHHHHHHHHHHSTHHH
T ss_pred HHHHHHHHHHHHHhChhHH
Confidence 4678889999999999875
No 21
>KOG3636|consensus
Probab=65.15 E-value=9.3 Score=31.94 Aligned_cols=80 Identities=15% Similarity=0.314 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHCCCCccch--hhHHHHHHHH-HHhChhhHHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHhhCH
Q psy8434 30 QLTLLILKVIHAYPRLRYYQ--GYHDVAITFL-LVVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSS 106 (114)
Q Consensus 30 ~L~~iL~a~~~~~p~l~Y~Q--Gm~dIaa~lL-lv~~E~~af~~~~~L~~~~l~d~~~~~l~~~~~~l~~l~~ll~~~dp 106 (114)
.|.-+|.-|.+ +..+.|-- |--.+.-+++ +-+|-.+.|.||.+++..|+|.--.|.- ....++.-|++..||
T Consensus 94 dlES~iTfYCK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg----~~Fh~FRLLlqYHdP 168 (669)
T KOG3636|consen 94 DLESFITFYCK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKG----QIFHLFRLLLQYHDP 168 (669)
T ss_pred hhhhHhhhhhh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCC----ccchHHHHHHHhcCH
Confidence 45556665543 33344432 3333444443 4468899999999999988864333321 345677779999999
Q ss_pred HHHHHhhC
Q psy8434 107 DLCEFLER 114 (114)
Q Consensus 107 ~L~~~L~~ 114 (114)
+|..||++
T Consensus 169 elc~~Ldt 176 (669)
T KOG3636|consen 169 ELCNHLDT 176 (669)
T ss_pred HHhhhhhc
Confidence 99999974
No 22
>KOG2801|consensus
Probab=64.37 E-value=23 Score=28.21 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHh-ChhhHHHH
Q psy8434 25 LALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVV-GEMKAFRI 70 (114)
Q Consensus 25 ~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~-~E~~af~~ 70 (114)
.++.-...+||.+.+..-|++++|-.+--+++.+|-+. +|.+.|.-
T Consensus 108 argegavrkilKOGanqfpdisfcpalpavvalllhysideaecfek 154 (559)
T KOG2801|consen 108 ARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEK 154 (559)
T ss_pred CcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHH
Confidence 34566777899999999999999999999999888664 77766643
No 23
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=52.66 E-value=14 Score=24.02 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=17.5
Q ss_pred HHHHHHHhChhhHHHHHHHHHHh
Q psy8434 55 AITFLLVVGEMKAFRILEVLSND 77 (114)
Q Consensus 55 aa~lLlv~~E~~af~~~~~L~~~ 77 (114)
||+||+.++|+.|-.+|..|...
T Consensus 11 AAilLl~Lgee~Aa~vlk~l~~~ 33 (108)
T PF14842_consen 11 AAILLLALGEEAAAEVLKHLDEE 33 (108)
T ss_dssp HHHHHHHS-HHHHHHHHHHS-HH
T ss_pred HHHHHHHHCHHHHHHHHccCCHH
Confidence 78999999999888888777653
No 24
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=51.82 E-value=60 Score=26.50 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHCCCC----ccchhhHHHHHHHHHH-hChhhHHHHHHHHHHhhhhhhhhcCh
Q psy8434 27 LQDQLTLLILKVIHAYPRL----RYYQGYHDVAITFLLV-VGEMKAFRILEVLSNDHLSENMRDTM 87 (114)
Q Consensus 27 ~~~~L~~iL~a~~~~~p~l----~Y~QGm~dIaa~lLlv-~~E~~af~~~~~L~~~~l~d~~~~~l 87 (114)
.-..|.|+|.||..++|.. ++.+|+=-|.--++.- ..|..||.+++.+..+.=.+.+.+-+
T Consensus 175 niPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl 240 (435)
T PF03378_consen 175 NIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPEALEPYL 240 (435)
T ss_dssp THHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGH
T ss_pred CcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHH
Confidence 4478999999999999864 3444443333322222 26889999999998743333333333
No 25
>KOG2224|consensus
Probab=47.06 E-value=9.4 Score=31.81 Aligned_cols=21 Identities=19% Similarity=0.193 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHHHhhhhhhhhc
Q psy8434 64 EMKAFRILEVLSNDHLSENMRD 85 (114)
Q Consensus 64 E~~af~~~~~L~~~~l~d~~~~ 85 (114)
|.++||||+-|+. .+.|...|
T Consensus 558 esetfwcfvglmq-gmsdlvap 578 (781)
T KOG2224|consen 558 ESETFWCFVGLMQ-GMSDLVAP 578 (781)
T ss_pred ccchhhhhhhhhc-cchhhhhh
Confidence 3578999998874 34444333
No 26
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=46.97 E-value=18 Score=29.13 Aligned_cols=60 Identities=15% Similarity=0.288 Sum_probs=38.6
Q ss_pred cchhhHHHHHHHHH--HhChhhHHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhh
Q psy8434 47 YYQGYHDVAITFLL--VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113 (114)
Q Consensus 47 Y~QGm~dIaa~lLl--v~~E~~af~~~~~L~~~~l~d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~ 113 (114)
+.+|-+++.--+.- +.+||+.|. ..-|-|| ..+++|......+|.+++...||+|..-+.
T Consensus 260 l~~gA~~lleeva~~kitGeEe~yS------htDL~Df-~ANveGa~~~~~~l~P~l~~~dp~l~~~id 321 (375)
T PRK10378 260 VVGGAAGLIEEVAASKISGEEDRYS------HTDLWDF-QANVDGSQKIVDLLRPLLEKANPELLAKVD 321 (375)
T ss_pred HHHHHHHHHHHHHhcccCCcccccc------cCCHHHH-HHHHHHHHHHHHHhhhhhhhcCHHHHHHHH
Confidence 44555555443333 235554432 2223343 568999999999999999999999976554
No 27
>PF10625 UspB: Universal stress protein B (UspB); InterPro: IPR019598 Universal stress protein B (UspB) in Escherichia coli is a 14kDa protein which is predicted to be an integral membrane protein. Over expression of UspB results in cell death in stationary phase, and mutants of UspB are sensitive to ethanol exposure during stationary phase [].
Probab=43.77 E-value=57 Score=21.61 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhCHHHHHH
Q psy8434 93 VLNYMFPLVNKRSSDLCEF 111 (114)
Q Consensus 93 ~l~~l~~ll~~~dp~L~~~ 111 (114)
.++.+--+++..||-||+.
T Consensus 25 sLR~LL~imR~~dPLLYQ~ 43 (107)
T PF10625_consen 25 SLRALLYIMREADPLLYQQ 43 (107)
T ss_pred HHHHHHHHHhcCCcHHHHh
Confidence 5566666777777777764
No 28
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=40.97 E-value=13 Score=18.69 Aligned_cols=10 Identities=40% Similarity=0.574 Sum_probs=7.5
Q ss_pred ccchhhHHHH
Q psy8434 46 RYYQGYHDVA 55 (114)
Q Consensus 46 ~Y~QGm~dIa 55 (114)
||.||.-|..
T Consensus 4 gyiqgipdfl 13 (31)
T PF08109_consen 4 GYIQGIPDFL 13 (31)
T ss_pred ccccccHHHH
Confidence 6889987754
No 29
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=39.69 E-value=33 Score=21.58 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=16.1
Q ss_pred cchhhHHHHHHHHHHh-ChhhHHHHHH
Q psy8434 47 YYQGYHDVAITFLLVV-GEMKAFRILE 72 (114)
Q Consensus 47 Y~QGm~dIaa~lLlv~-~E~~af~~~~ 72 (114)
|-||.||-.+++.-=+ +-+++.|.++
T Consensus 51 YNQGi~da~a~i~ekl~d~te~l~~LE 77 (82)
T COG5460 51 YNQGIKDARAVIEEKLADMTEELFALE 77 (82)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 5599999988876544 2233444443
No 30
>PF03937 Sdh5: Flavinator of succinate dehydrogenase; InterPro: IPR005631 This entry represents a group of uncharacterised small proteins found in both eukaryotes and prokaryotes, including NMA1147 from Neisseria meningitidis [] and YgfY from Escherichia coli []. YgfY may be involved in transcriptional regulation. The structure of these proteins consists of a complex bundle of five alpha-helices, which is composed of an up-down 3-helix bundle plus an orthogonal 2-helix bundle. ; PDB: 2LM4_A 1PUZ_A 2JR5_A 1X6I_A 1X6J_A.
Probab=38.71 E-value=49 Score=20.12 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhCHHHHHHh
Q psy8434 92 YVLNYMFPLVNKRSSDLCEFL 112 (114)
Q Consensus 92 ~~l~~l~~ll~~~dp~L~~~L 112 (114)
..+..+..||..-||+|++.+
T Consensus 35 ~el~~fe~lL~~~D~dL~~wl 55 (74)
T PF03937_consen 35 EELDAFERLLDLEDPDLYDWL 55 (74)
T ss_dssp HHHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 567777888999999998865
No 31
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=38.33 E-value=52 Score=19.03 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=17.2
Q ss_pred HHHHHHHHHHH---CCCCccchhhHHHHHH
Q psy8434 31 LTLLILKVIHA---YPRLRYYQGYHDVAIT 57 (114)
Q Consensus 31 L~~iL~a~~~~---~p~l~Y~QGm~dIaa~ 57 (114)
+...+.+.... ..+-.|.||+-|++..
T Consensus 32 l~~~~~al~~~~~~~~e~afr~G~~d~l~~ 61 (64)
T PF12644_consen 32 LEEYIDALGARWGLESEEAFRQGFRDGLRL 61 (64)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33444444433 3467799999998764
No 32
>PRK04960 universal stress protein UspB; Provisional
Probab=37.12 E-value=63 Score=21.55 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhCHHHHH
Q psy8434 93 VLNYMFPLVNKRSSDLCE 110 (114)
Q Consensus 93 ~l~~l~~ll~~~dp~L~~ 110 (114)
.++.+--+++..||-||+
T Consensus 25 sLR~LL~imRe~dPLLYQ 42 (111)
T PRK04960 25 SLRALLVVLRGCDPLLYQ 42 (111)
T ss_pred HHHHHHHHHHccCchhhe
Confidence 444455556666666655
No 33
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=34.19 E-value=60 Score=15.49 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHCCCCccchhhHHHHHHH
Q psy8434 28 QDQLTLLILKVIHAYPRLRYYQGYHDVAITF 58 (114)
Q Consensus 28 ~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~l 58 (114)
++.|.+++..|+..+ |+.+.+..|
T Consensus 3 ~~~l~~lI~~yL~~~-------g~~~ta~~l 26 (34)
T smart00667 3 RSELNRLILEYLLRN-------GYEETAETL 26 (34)
T ss_pred HHHHHHHHHHHHHHc-------CHHHHHHHH
Confidence 345777888888764 888877665
No 34
>PF09751 Es2: Nuclear protein Es2; InterPro: IPR019148 This entry represents a family of proteins of approximately 500 residues with alternating regions of low complexity and conservation where the domain similarities are strong. Apart from a predicted coiled-coil domain, no other known functional domains have been characterised. May be involved in pre-mRNA splicing and has been associated with the spliceosome C complex. The protein appears to be expressed in the nucleus, particularly in the pons sub-region of the brain. It is clearly necessary for normal development of the nervous system [].
Probab=33.90 E-value=71 Score=25.84 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=28.7
Q ss_pred HhChhhHHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHhhCHH
Q psy8434 61 VVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSD 107 (114)
Q Consensus 61 v~~E~~af~~~~~L~~~~l~d~~~~~l~~~~~~l~~l~~ll~~~dp~ 107 (114)
|++|++=-..|++++. |||| |+|..+..+...|..+ +..|++
T Consensus 5 vL~Ed~Y~~~l~~II~---RDfF-PdL~~l~~q~eyLeA~-es~D~~ 46 (414)
T PF09751_consen 5 VLDEDEYTEALSKIIQ---RDFF-PDLPKLRAQNEYLEAL-ESNDPE 46 (414)
T ss_pred cccHHHHHHHHHHHHH---hhhC-CChHHHHHHHHHHHHH-HcCCHH
Confidence 5677776677888874 5765 7888888777766553 445553
No 35
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=30.36 E-value=1.4e+02 Score=19.43 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHCCCCc-c--chhhHHHHHHHHHHhChhhHHHHHHHHHHhhhhhhhhcC
Q psy8434 31 LTLLILKVIHAYPRLR-Y--YQGYHDVAITFLLVVGEMKAFRILEVLSNDHLSENMRDT 86 (114)
Q Consensus 31 L~~iL~a~~~~~p~l~-Y--~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~l~d~~~~~ 86 (114)
+.||=-++..+||+++ | ||-=.+.-+++=.+.+-..+|- +..+....+|--+..+
T Consensus 3 i~rv~d~~~~khPG~~~Ya~CqS~Af~kG~~tFv~G~~~~f~-~Q~~iqrrlpYp~q~~ 60 (94)
T PF15110_consen 3 ISRVDDAVADKHPGLQEYAACQSRAFMKGLFTFVLGTGATFF-LQKAIQRRLPYPFQWN 60 (94)
T ss_dssp HHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHTTSSSSS-HH
T ss_pred hhHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHhCCCCCCch
Confidence 5667788999999998 5 7998899888888888776664 3444455555444443
No 36
>PRK15322 invasion protein OrgB; Provisional
Probab=30.16 E-value=1.3e+02 Score=22.46 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=27.4
Q ss_pred CccchhhHHHHHHHHHHhC--hhhHHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHH
Q psy8434 45 LRYYQGYHDVAITFLLVVG--EMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFP 99 (114)
Q Consensus 45 l~Y~QGm~dIaa~lLlv~~--E~~af~~~~~L~~~~l~d~~~~~l~~~~~~l~~l~~ 99 (114)
=||.||+.-...-+--++. +.....+.+.+. .+.|.-|...++.....+.++..
T Consensus 46 ~GYq~Gl~qa~~~la~~~a~~~~l~~~l~~~ie-~~~r~lls~~Ld~pd~LL~~le~ 101 (210)
T PRK15322 46 EGYEQGMIDALQQVAAYLTDNQTMAWKWMEKIQ-IYARELFSAAVDHPETLLTVLDE 101 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHHH
Confidence 4899998877777665553 333444444442 23333333333333333334333
No 37
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=25.04 E-value=3.1e+02 Score=20.81 Aligned_cols=14 Identities=14% Similarity=0.088 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhC
Q psy8434 92 YVLNYMFPLVNKRS 105 (114)
Q Consensus 92 ~~l~~l~~ll~~~d 105 (114)
..++++..+++.+|
T Consensus 207 ~~L~iL~~ll~~~d 220 (262)
T PF14225_consen 207 KTLQILKVLLPHVD 220 (262)
T ss_pred HHHHHHHHHhcccc
Confidence 55667777776665
No 38
>PF14679 FANCI_HD1: FANCI helical domain 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=24.29 E-value=1.9e+02 Score=18.36 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=21.2
Q ss_pred HHHHHHHHHh--C--hhhHHHHHHHHHHhhhhhh
Q psy8434 53 DVAITFLLVV--G--EMKAFRILEVLSNDHLSEN 82 (114)
Q Consensus 53 dIaa~lLlv~--~--E~~af~~~~~L~~~~l~d~ 82 (114)
+..|++|.+. + ||..|.++...+....+|+
T Consensus 24 F~vallLsvarI~Rfeeqvfd~Lk~~i~k~~kd~ 57 (87)
T PF14679_consen 24 FSVALLLSVARIQRFEEQVFDFLKAAIVKSFKDD 57 (87)
T ss_dssp HHHHHHHHHTTSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665 3 8999999998887666554
No 39
>KOG4305|consensus
Probab=24.15 E-value=1e+02 Score=28.27 Aligned_cols=30 Identities=3% Similarity=0.000 Sum_probs=24.0
Q ss_pred hhhhhhcChHHHHHHHHHHHHHHHhhCHHH
Q psy8434 79 LSENMRDTMDETSYVLNYMFPLVNKRSSDL 108 (114)
Q Consensus 79 l~d~~~~~l~~~~~~l~~l~~ll~~~dp~L 108 (114)
+-.|+++.+..+.++--+++.+|+.-||+=
T Consensus 470 L~~FL~kp~sRl~RYpLllr~ILk~TdP~n 499 (1029)
T KOG4305|consen 470 LVSFLTKPTSRLQRYPLLLREILKHTDPEN 499 (1029)
T ss_pred hhhhhccccchhheeeHHHHHHHhcCCCCC
Confidence 557888888888888888888888888764
No 40
>COG4508 Dimeric dUTPase [Carbohydrate transport and metabolism]
Probab=23.24 E-value=58 Score=22.86 Aligned_cols=15 Identities=27% Similarity=0.241 Sum_probs=12.4
Q ss_pred cchhhHHHHHHHHHH
Q psy8434 47 YYQGYHDVAITFLLV 61 (114)
Q Consensus 47 Y~QGm~dIaa~lLlv 61 (114)
|.-|+|+|.++=|..
T Consensus 68 Y~dglHF~lsigl~~ 82 (161)
T COG4508 68 YSDGLHFLLSIGLYY 82 (161)
T ss_pred HhhhHHHHHHhHHHH
Confidence 788999998887765
No 41
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=22.72 E-value=1.7e+02 Score=17.07 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCccc
Q psy8434 19 IPIEQRLALQDQLTLLILKVIHAYPRLRYY 48 (114)
Q Consensus 19 ~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~ 48 (114)
.+++++....+.-.+....|...+|+..|+
T Consensus 43 ls~~eK~~y~~~a~~~k~~y~~~~p~y~y~ 72 (72)
T cd01388 43 LSNEEKQPYYEEAKKLKELHMKLYPDYKWR 72 (72)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence 445667778888888889999999998886
No 42
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=22.33 E-value=3.5e+02 Score=20.48 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHH-------hhhhhhhhcChHHHH-----HHHHHHHHHHH
Q psy8434 52 HDVAITFLLVVGEMKAFRILEVLSN-------DHLSENMRDTMDETS-----YVLNYMFPLVN 102 (114)
Q Consensus 52 ~dIaa~lLlv~~E~~af~~~~~L~~-------~~l~d~~~~~l~~~~-----~~l~~l~~ll~ 102 (114)
|..+..+|.-+.|+.||..+.+|.. .++-|+.+.++..+. .....+..+++
T Consensus 59 ~~~a~~LLaq~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~ 121 (249)
T PF06685_consen 59 HFYALYLLAQFREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDGDIEPLKELIE 121 (249)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHh
Confidence 3556666777899999999888884 345666666666654 23445555543
No 43
>cd07029 RNAP_I_III_AC19 AC19 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC19 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC19 subunit is the equivalent of the RPB11 subunit of RNAP II. The RPB11 subunit heterodimerizes with the RPB3 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association. The homology of AC19 to RPB11 suggests a similar function. The AC19 subunit is likely to ass
Probab=21.86 E-value=78 Score=19.88 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHCCCCccc
Q psy8434 31 LTLLILKVIHAYPRLRYY 48 (114)
Q Consensus 31 L~~iL~a~~~~~p~l~Y~ 48 (114)
|-|+|..++.++|++-++
T Consensus 22 LgNlLr~~L~~~p~V~fa 39 (85)
T cd07029 22 LGNSLRYVIMKNPEVEFC 39 (85)
T ss_pred hHHHHHHHHhhCCCceEE
Confidence 778999999999998765
No 44
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=21.50 E-value=67 Score=15.18 Aligned_cols=9 Identities=44% Similarity=0.874 Sum_probs=6.3
Q ss_pred chhhHHHHH
Q psy8434 48 YQGYHDVAI 56 (114)
Q Consensus 48 ~QGm~dIaa 56 (114)
+||+|.+.-
T Consensus 9 ~qglhe~ik 17 (23)
T PF08225_consen 9 FQGLHEVIK 17 (23)
T ss_pred HHHHHHHHH
Confidence 688887643
No 45
>KOG0166|consensus
Probab=21.45 E-value=2.4e+02 Score=23.83 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHhhCHHHH
Q psy8434 67 AFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLC 109 (114)
Q Consensus 67 af~~~~~L~~~~l~d~~~~~l~~~~~~l~~l~~ll~~~dp~L~ 109 (114)
|-|++..||..-= =.|.++.+...+..|..|+...|+++.
T Consensus 215 ~tW~LsNlcrgk~---P~P~~~~v~~iLp~L~~ll~~~D~~Vl 254 (514)
T KOG0166|consen 215 ATWTLSNLCRGKN---PSPPFDVVAPILPALLRLLHSTDEEVL 254 (514)
T ss_pred HHHHHHHHHcCCC---CCCcHHHHHHHHHHHHHHHhcCCHHHH
Confidence 7899999996421 246788999999999999999999986
No 46
>PRK10878 hypothetical protein; Provisional
Probab=21.06 E-value=1e+02 Score=18.92 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhCHHHHHHh
Q psy8434 92 YVLNYMFPLVNKRSSDLCEFL 112 (114)
Q Consensus 92 ~~l~~l~~ll~~~dp~L~~~L 112 (114)
..+..+..||..-||+|+..+
T Consensus 22 ~e~~~Fe~LL~~~D~dL~~W~ 42 (72)
T PRK10878 22 DEKRIFIRLLECDDPDLFNWL 42 (72)
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 566677778888888887765
No 47
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=20.84 E-value=3.4e+02 Score=19.68 Aligned_cols=49 Identities=18% Similarity=0.059 Sum_probs=29.7
Q ss_pred chhhHHHHHHHHHHhChhhHHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHH
Q psy8434 48 YQGYHDVAITFLLVVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPL 100 (114)
Q Consensus 48 ~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~l~d~~~~~l~~~~~~l~~l~~l 100 (114)
.||.+|+... -+.+....++-+|+.-.-+...+++.+-....+++|..|
T Consensus 59 ~~g~~dll~~----~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 59 RQGIKDLLER----GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred HHHHHHHHHh----cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4777776544 456666667777765444455555555555666666666
Done!