Query psy8434
Match_columns 114
No_of_seqs 104 out of 441
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 18:45:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hl4_A TBC1 domain family memb 100.0 6E-36 2.1E-40 226.2 7.5 113 2-114 84-196 (292)
2 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 4.3E-32 1.5E-36 206.2 10.3 110 2-113 71-181 (310)
3 3qye_A TBC1 domain family memb 100.0 8.4E-32 2.9E-36 206.0 10.0 111 2-114 105-216 (331)
4 2qq8_A TBC1 domain family memb 100.0 2.9E-31 9.8E-36 204.0 9.1 109 2-113 111-220 (334)
5 1fkm_A Protein (GYP1P), ORF YO 100.0 3.3E-30 1.1E-34 202.4 9.5 108 2-114 88-224 (396)
6 2qfz_A TBC1 domain family memb 100.0 3.7E-30 1.3E-34 198.0 8.5 107 2-114 106-237 (345)
7 3qwl_A TBC1 domain family memb 99.4 1.2E-13 3.9E-18 105.0 6.2 64 47-114 131-195 (294)
8 2js3_A Uncharacterized protein 64.5 1.6 5.5E-05 26.8 0.3 11 46-56 17-27 (96)
9 3at7_A Alginate-binding flagel 28.5 44 0.0015 24.5 3.1 29 85-113 192-220 (283)
10 3g80_A Protein B2; RNA-binding 27.0 1.1E+02 0.0039 18.8 5.2 17 88-104 56-72 (97)
11 1rji_A BMKX, potassium channel 26.1 17 0.00057 17.7 0.3 6 45-50 24-29 (31)
12 1erd_A Pheromone ER-2; NMR {Eu 24.6 42 0.0014 17.0 1.7 13 42-54 14-26 (40)
13 3qpd_A Cutinase 1; alpha-beta 21.3 77 0.0026 21.8 3.1 29 26-54 74-107 (187)
14 3s1b_A Mini-Z; VEGF, cystine k 21.1 65 0.0022 15.8 1.9 24 34-57 5-30 (34)
15 3fxh_A Integron gene cassette 20.4 25 0.00086 22.3 0.3 10 47-56 18-27 (135)
No 1
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=6e-36 Score=226.17 Aligned_cols=113 Identities=50% Similarity=0.883 Sum_probs=108.3
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHhhhhh
Q psy8434 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLSE 81 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~l~d 81 (114)
+||++||+|||++++.+.++++++.+|++|.|||.+|+.+||++|||||||+|||+||++++|++||||+++++..++++
T Consensus 84 ~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~e~~aF~~l~~l~~~~l~~ 163 (292)
T 4hl4_A 84 QQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRD 163 (292)
T ss_dssp HHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHTTTTG
T ss_pred HHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 69999999999999988877788899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434 82 NMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114 (114)
Q Consensus 82 ~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~ 114 (114)
||.++++++...++++..|++..||+|++||++
T Consensus 164 ~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~ 196 (292)
T 4hl4_A 164 FMDPTMDNTKHILNYLMPIIDQVNPELHDFMQS 196 (292)
T ss_dssp GGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-
T ss_pred hcccchHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 999999999999999999999999999999964
No 2
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=99.97 E-value=4.3e-32 Score=206.20 Aligned_cols=110 Identities=19% Similarity=0.176 Sum_probs=102.3
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHh-hhh
Q psy8434 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSND-HLS 80 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~-~l~ 80 (114)
+||++||+||+|.++.+... .+.+++.|.|||.+|+..||++|||||||+|||+||++++|++||||+.+++.. .++
T Consensus 71 ~~I~~Dv~Rt~p~~~~f~~~--~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~e~~aF~~l~~l~~~~~~~ 148 (310)
T 3hzj_A 71 SVITRDIHRTFPAHDYFKDT--GGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLR 148 (310)
T ss_dssp HHHHHHHTTSSTTSTTTSST--TSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSCHHHHHHHHHHHHHTSCGG
T ss_pred HHHHHHHHhhCCCchhhcCC--CchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhCCHHHHHHHHHHHHhccccc
Confidence 58999999999998877543 346899999999999999999999999999999999999999999999999976 499
Q ss_pred hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhh
Q psy8434 81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113 (114)
Q Consensus 81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~ 113 (114)
++|.++++++...+..+..|++..||+|++||+
T Consensus 149 ~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~ 181 (310)
T 3hzj_A 149 DLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFS 181 (310)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 999999999999999999999999999999996
No 3
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=99.97 E-value=8.4e-32 Score=205.99 Aligned_cols=111 Identities=24% Similarity=0.228 Sum_probs=102.8
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHhh-hh
Q psy8434 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDH-LS 80 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~-l~ 80 (114)
+||++||+||+|.++.+... .+.+++.|.|||.+|+.+||++|||||||+|||+||++++|++||||+..|+..+ ++
T Consensus 105 ~~I~~Dv~Rt~~~~~~f~~~--~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~ 182 (331)
T 3qye_A 105 HAILIDLGRTFPTHPYFSAQ--LGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLR 182 (331)
T ss_dssp HHHHHHHTTSSTTSTTTCST--TCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHHHHTTTCGG
T ss_pred hHHHHhhcccCCCchhhcCC--CcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhhHHHHHHHHHHHHHhcCch
Confidence 58999999999998877543 2458899999999999999999999999999999999999999999999999865 89
Q ss_pred hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434 81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114 (114)
Q Consensus 81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~ 114 (114)
++|.++++++...+..+..|++..||+|++||++
T Consensus 183 ~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~ 216 (331)
T 3qye_A 183 KQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEE 216 (331)
T ss_dssp GGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999963
No 4
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.9e-31 Score=204.01 Aligned_cols=109 Identities=16% Similarity=0.127 Sum_probs=100.3
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhChhhHHHHHHHHHHhh-hh
Q psy8434 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDH-LS 80 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~E~~af~~~~~L~~~~-l~ 80 (114)
+||++||+||||.++.+.. .+.+++.|.|||.+|+..||++|||||||+|||+||++++|++|||||.+|+... .+
T Consensus 111 ~~I~~Dv~RT~p~~~~F~~---~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~E~~aF~~~~~l~~~~~~~ 187 (334)
T 2qq8_A 111 ELIKLDISRTFPNLCIFQQ---GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQM 187 (334)
T ss_dssp HHHHHHHHTSSGGGCSSST---TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSCHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHhhcCCCchhhcC---CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhHH
Confidence 5899999999998877643 2357899999999999999999999999999999999999999999999999865 57
Q ss_pred hhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhh
Q psy8434 81 ENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLE 113 (114)
Q Consensus 81 d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~ 113 (114)
+||.++++++...+.++..|++..||+|++||+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~ 220 (334)
T 2qq8_A 188 AFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFK 220 (334)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hccCCChHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 899999999999999999999999999999996
No 5
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=99.96 E-value=3.3e-30 Score=202.37 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=99.2
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHh-------------------
Q psy8434 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVV------------------- 62 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~------------------- 62 (114)
+||++||.||+|.++.+.. +.+|+.|.|||.+|+..||++|||||||+|||+||+|+
T Consensus 88 ~qI~~Dv~RT~p~~~~F~~----~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~ 163 (396)
T 1fkm_A 88 HQIEIDIPRTNPHIPLYQF----KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPS 163 (396)
T ss_dssp HHHHHHGGGSSTTSGGGGS----HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGG
T ss_pred HHHHHHhhhhCCCcccccC----chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchh
Confidence 6899999999998877643 35899999999999999999999999999999999985
Q ss_pred ---C-------hhhHHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434 63 ---G-------EMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114 (114)
Q Consensus 63 ---~-------E~~af~~~~~L~~~~l~d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~ 114 (114)
+ |++|||||++|+.. ++++|.++++++...+.++..||+..||+|++||++
T Consensus 164 ~~l~~~~~~~~E~daF~~f~~lm~~-~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~ 224 (396)
T 1fkm_A 164 TYMVDEQITDLEADTFWCLTKLLEQ-ITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQN 224 (396)
T ss_dssp GTCCHHHHHHHHHHHHHHHHHHHGG-GGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hccchhhhhhhHHHHHHHHHHHHHH-HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 89999999999986 699999999999999999999999999999999973
No 6
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=99.96 E-value=3.7e-30 Score=197.96 Aligned_cols=107 Identities=15% Similarity=0.238 Sum_probs=97.0
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHhC------------------
Q psy8434 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVG------------------ 63 (114)
Q Consensus 2 ~QI~~Dv~Rt~~~~~~~~~~~~~~~~~~~L~~iL~a~~~~~p~l~Y~QGm~dIaa~lLlv~~------------------ 63 (114)
+||++||+||+|. +.+.. ..+|+.|.|||.+|+..||++|||||||+|||+||+++.
T Consensus 106 ~~I~~Dv~RT~p~-~~F~~----~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~ 180 (345)
T 2qfz_A 106 RQIHIDIPRMSPE-ALILQ----PKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVP 180 (345)
T ss_dssp HHHHHHGGGCSCH-HHHTS----HHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSC
T ss_pred HHHHHhCcccCCc-cccCC----chHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhh
Confidence 6899999999987 55543 347899999999999999999999999999999998862
Q ss_pred -------hhhHHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434 64 -------EMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114 (114)
Q Consensus 64 -------E~~af~~~~~L~~~~l~d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~ 114 (114)
|++|||||++|+.. ++++|.++++++...+.++..|++..||+|++||++
T Consensus 181 ~~~~~~~E~daF~~f~~lm~~-~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~ 237 (345)
T 2qfz_A 181 AEVLCNIEADTYWCMSKLLDG-IQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQ 237 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-SGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHc-cccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999986 499999999999999999999999999999999973
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=104.96 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=57.3
Q ss_pred cchhhHHHHHHHHHHh-ChhhHHHHHHHHHHhhhhhhhhcChHHHHHHHHHHHHHHHhhCHHHHHHhhC
Q psy8434 47 YYQGYHDVAITFLLVV-GEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114 (114)
Q Consensus 47 Y~QGm~dIaa~lLlv~-~E~~af~~~~~L~~~~l~d~~~~~l~~~~~~l~~l~~ll~~~dp~L~~~L~~ 114 (114)
++|||.+|||++++++ +|++|||||..|+.. ++++|.++++|+++.+ ..|++..||+|++||++
T Consensus 131 ~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~-l~~~f~~~~~gl~~~l---~~LL~~~dP~L~~HL~~ 195 (294)
T 3qwl_A 131 DDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQ-LNTKYRDSLPQLPKAF---EQYLNLEDGRLLTHLRM 195 (294)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH-HHTTTTTTGGGHHHHH---HHHHHHHCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHHhhCCChhHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5699999999999776 799999999999987 7899999999987654 88999999999999973
No 8
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=64.53 E-value=1.6 Score=26.83 Aligned_cols=11 Identities=45% Similarity=0.782 Sum_probs=9.0
Q ss_pred ccchhhHHHHH
Q psy8434 46 RYYQGYHDVAI 56 (114)
Q Consensus 46 ~Y~QGm~dIaa 56 (114)
-|+|||-++++
T Consensus 17 lyfqgM~~~a~ 27 (96)
T 2js3_A 17 LYFQGMTDTAA 27 (96)
T ss_dssp BTTBSTTTHHH
T ss_pred eeeccccccCH
Confidence 39999998765
No 9
>3at7_A Alginate-binding flagellin; two UP-and-DOWN four-helical bundles, ALGI structural protein; 2.10A {Sphingomonas}
Probab=28.51 E-value=44 Score=24.51 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=24.1
Q ss_pred cChHHHHHHHHHHHHHHHhhCHHHHHHhh
Q psy8434 85 DTMDETSYVLNYMFPLVNKRSSDLCEFLE 113 (114)
Q Consensus 85 ~~l~~~~~~l~~l~~ll~~~dp~L~~~L~ 113 (114)
.++.|+......|.++|+..||+|...+.
T Consensus 192 aNl~G~~~vy~~L~~ll~~~d~~L~~~i~ 220 (283)
T 3at7_A 192 ANFEGAKKIVDLFRPLVVKDNRAFADKVD 220 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 46778888888899999999999987654
No 10
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=27.03 E-value=1.1e+02 Score=18.77 Aligned_cols=17 Identities=6% Similarity=0.053 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy8434 88 DETSYVLNYMFPLVNKR 104 (114)
Q Consensus 88 ~~~~~~l~~l~~ll~~~ 104 (114)
+++.++++-+..+|.+.
T Consensus 56 pnV~kDLdn~~acL~k~ 72 (97)
T 3g80_A 56 PNVNKDLRAFCEFLTVQ 72 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 66666776666666554
No 11
>1rji_A BMKX, potassium channel toxin KX; 3-10 helix, beta sheet; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1wt8_A
Probab=26.07 E-value=17 Score=17.73 Aligned_cols=6 Identities=50% Similarity=0.700 Sum_probs=4.3
Q ss_pred Cccchh
Q psy8434 45 LRYYQG 50 (114)
Q Consensus 45 l~Y~QG 50 (114)
-+||||
T Consensus 24 ~~y~q~ 29 (31)
T 1rji_A 24 NGYCQG 29 (31)
T ss_dssp SSBBSC
T ss_pred ceeecc
Confidence 368887
No 12
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=24.62 E-value=42 Score=17.04 Aligned_cols=13 Identities=23% Similarity=0.107 Sum_probs=8.9
Q ss_pred CCCCccchhhHHH
Q psy8434 42 YPRLRYYQGYHDV 54 (114)
Q Consensus 42 ~p~l~Y~QGm~dI 54 (114)
|.-.|||||=-..
T Consensus 14 htmcgycqgplym 26 (40)
T 1erd_A 14 HTMCGYCQGPLYM 26 (40)
T ss_dssp GGGGGGSCHHHHH
T ss_pred ccccccccCCeeE
Confidence 4557899995443
No 13
>3qpd_A Cutinase 1; alpha-beta hydrolase fold, esterase, hydrolase, mono- phosphorylated serine residue, secreted, phosphorylated Ser residue; HET: SEP; 1.57A {Aspergillus oryzae} PDB: 3gbs_A
Probab=21.34 E-value=77 Score=21.83 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHCCC-----CccchhhHHH
Q psy8434 26 ALQDQLTLLILKVIHAYPR-----LRYYQGYHDV 54 (114)
Q Consensus 26 ~~~~~L~~iL~a~~~~~p~-----l~Y~QGm~dI 54 (114)
...+.+.+++..++.+.|. .||-||=.-+
T Consensus 74 ~g~~~~~~~i~~~~~~CP~tkivl~GYSQGA~V~ 107 (187)
T 3qpd_A 74 AAIAEAQGLFEQAVSKCPDTQIVAGGYSQGTAVM 107 (187)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEeeccccHHH
Confidence 3567788999999999997 6799997433
No 14
>3s1b_A Mini-Z; VEGF, cystine knot, signaling protein; 2.90A {Homo sapiens}
Probab=21.15 E-value=65 Score=15.78 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=18.1
Q ss_pred HHHHH--HHHCCCCccchhhHHHHHH
Q psy8434 34 LILKV--IHAYPRLRYYQGYHDVAIT 57 (114)
Q Consensus 34 iL~a~--~~~~p~l~Y~QGm~dIaa~ 57 (114)
.|..| +..+|.++-||-..-|+++
T Consensus 5 cllrykeaaldpnlnlyqriakivsi 30 (34)
T 3s1b_A 5 CLLRYKEAALDPNLNLYQRIAKIVSI 30 (34)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCChhHHHHHHHHhcc
Confidence 44455 3568999999999888775
No 15
>3fxh_A Integron gene cassette protein HFX_CASS2; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.84A {Uncultured bacterium}
Probab=20.42 E-value=25 Score=22.31 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=5.9
Q ss_pred cchhhHHHHH
Q psy8434 47 YYQGYHDVAI 56 (114)
Q Consensus 47 Y~QGm~dIaa 56 (114)
|+||||.--+
T Consensus 18 yfqgmnnkha 27 (135)
T 3fxh_A 18 YFQGMNNKHA 27 (135)
T ss_dssp --CCCCHHHH
T ss_pred eeeccccchh
Confidence 9999987543
Done!