RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8434
(114 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.037
Identities = 22/138 (15%), Positives = 46/138 (33%), Gaps = 31/138 (22%)
Query: 8 VNRSLKRFPPGIP-IEQRLALQ-DQLTLLILKVIHAYPRLRYYQ---------------- 49
V + K IP I L ++ + L ++ Y + +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 50 -GYHDVAITFLLVVGEMKA----FRILEV-LSNDHLSENMR----DTMDETSYVLNYMF- 98
G+H I + + FR LE + +D + N +T+ + + Y+
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 99 --PLVNKRSSDLCEFLER 114
P + + + +FL +
Sbjct: 537 NDPKYERLVNAILDFLPK 554
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet
receptors, glycocalicin, leucine rich repeats, BLOO
clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP:
c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B
1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 30.5 bits (69), Expect = 0.076
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 9 NRSLKRFPPGIPIE-QRLALQD-QLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMK 66
R+L PP +P + L L + L L + Y RL +T L V G +
Sbjct: 19 KRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN-LDRAELTKLQVDGTLP 77
Query: 67 AFRILEVLSNDHLS 80
L+ LS++ L
Sbjct: 78 VLGTLD-LSHNQLQ 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR
hybrid, MD-2, LPS, glycoprotein response, inflammatory
response, innate immunity; HET: NAG FUL BMA; 1.70A
{Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 29.9 bits (68), Expect = 0.14
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 9 NRSLKRFPPGIPIE-QRLALQD-QLTLLILKVIHAYPRLRY 47
+ + P +P + L L L L ++P L+
Sbjct: 16 ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQV 56
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
trafficking, endocytosis, hydrolase, GTPase activation;
1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
PDB: 2g77_A*
Length = 396
Score = 28.8 bits (64), Expect = 0.33
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 1 YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
+ Q+ +D+ R+ P IP+ Q ++Q+ L ++ +P Y QG +D+ F
Sbjct: 87 WHQIEIDIPRTN----PHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFE 142
Query: 61 VVGEMK 66
Sbjct: 143 TFLTEY 148
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.39
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 3 QVVLDVNRSLKRFPPG-IPIEQRLALQDQL 31
Q + + SLK + P LA++ +
Sbjct: 20 QALKKLQASLKLYADDSAPA---LAIKATM 46
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB:
2v9s_A
Length = 220
Score = 28.5 bits (64), Expect = 0.41
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 9 NRSLKRFPPGIPIE-QRLALQD-QLTLLILKVIHAYPRLRY 47
+ L P +P + L+ + ++ Y +LR
Sbjct: 20 GKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRR 60
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: b.38.3.1 c.88.1.1
Length = 435
Score = 28.5 bits (64), Expect = 0.41
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 85 DTMDETSYVLNYMF 98
DTM TS L++M
Sbjct: 178 DTMHYTSAALSFML 191
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 28.4 bits (64), Expect = 0.44
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 9 NRSLKRFPPGIPIE-QRLALQDQLTLLILKVIHAYPRLRY 47
N+ LK P GIP + L L L+ K + Y L
Sbjct: 19 NKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTL 58
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure,
asparaginase 1 family, GATD subfamily, lyase; 3.00A
{Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Length = 438
Score = 28.5 bits (64), Expect = 0.50
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 85 DTMDETSYVLNYMFPLVNK 103
DTM T+ L++M + K
Sbjct: 179 DTMGYTAAALSFMLRNLGK 197
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A*
3kj4_A*
Length = 285
Score = 28.0 bits (63), Expect = 0.61
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 9 NRSLKRFPPGIPIE-QRLALQD-QLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMK 66
+ L+ P GIP QR+ L +++ + A L + + + + +
Sbjct: 20 QQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARI----DAA 74
Query: 67 AFRILEVLSNDHLSENMR 84
AF L +L LS+N +
Sbjct: 75 AFTGLALLEQLDLSDNAQ 92
>3e6j_A Variable lymphocyte receptor diversity region; variable
lymphocyte receptors, VLR, leucine-rich repeat, LRR
adaptive immunity, immune system; HET: DR2; 1.67A
{Petromyzon marinus}
Length = 229
Score = 27.7 bits (62), Expect = 0.62
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 9 NRSLKRFPPGIPIE-QRLALQD-QLTLLILKVIHAYPRLRY 47
++ P GIP Q L L D Q+T L V + L+
Sbjct: 28 SKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKE 68
>2qq8_A TBC1 domain family member 14; structural genomics consortium,
RAB-GAP, SGC, GTPase activation, hydrolase activator;
2.00A {Homo sapiens}
Length = 334
Score = 27.9 bits (62), Expect = 0.73
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 6 LDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAY----PRLRYYQGYHDVAITFLLV 61
LD++R+ FP +Q D L ++ AY P + Y QG +A +L
Sbjct: 115 LDISRT---FPNLCIFQQGGPYHDML----HSILGAYTCYRPDVGYVQGMSFIAAVLILN 167
Query: 62 VGEMKAFRILEVLSNDHL 79
+ AF L N
Sbjct: 168 LDTADAFIAFSNLLNKPC 185
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison
hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB:
3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Length = 326
Score = 27.5 bits (62), Expect = 0.81
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 85 DTMDETSYVLNYMFPL 100
DTM+ET+Y L+
Sbjct: 90 DTMEETAYFLDLTVKC 105
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A
{Wolinella succinogenes} SCOP: c.88.1.1
Length = 330
Score = 27.5 bits (62), Expect = 0.85
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 85 DTMDETSYVLNYMFP 99
DTM+ET++ LN
Sbjct: 94 DTMEETAFFLNLTVK 108
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A
2p2n_A 3ntx_A* 2ocd_A
Length = 358
Score = 27.7 bits (62), Expect = 0.87
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 85 DTMDETSYVLNYMFPLVNK 103
DTM T+ L++M + K
Sbjct: 112 DTMAYTASALSFMLENLGK 130
>3m19_A Variable lymphocyte receptor A diversity region; adaptive
immunity, antibody, T cell, leucine-rich repeat, immune
system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 27.4 bits (61), Expect = 0.90
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 9 NRSLKRFPPGIPIE-QRLALQD-QLTLLILKVIHAYPRLRY 47
+SL P GIP + ++L LQ L L +L +
Sbjct: 23 GKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTW 63
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Length = 332
Score = 27.5 bits (62), Expect = 0.90
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 85 DTMDETSYVLNYMFP 99
DT++E++Y LN +
Sbjct: 96 DTLEESAYFLNLVLH 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 27.3 bits (61), Expect = 0.92
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 9 NRSLKRFPPGIPIE-QRLALQD-QLTLL 34
R LK P IP+ L L D +L +
Sbjct: 17 GRGLKEIPRDIPLHTTELLLNDNELGRI 44
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni
subsp}
Length = 334
Score = 27.6 bits (62), Expect = 0.98
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 85 DTMDETSYVLNYMFP 99
DTM+ET+Y LN
Sbjct: 99 DTMEETAYFLNLTIK 113
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural
genomics, synthetase; 1.60A {Burkholderia pseudomallei}
PDB: 3gwe_A
Length = 365
Score = 27.5 bits (62), Expect = 1.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 73 VLSNDHLSENMRDTMDE 89
VL+ND L++ D E
Sbjct: 44 VLTNDVLAQLYPDWPAE 60
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia
chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A
1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A*
2jk0_A
Length = 327
Score = 27.2 bits (61), Expect = 1.1
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 85 DTMDETSYVLNYMFP 99
DT++E++Y L+
Sbjct: 96 DTVEESAYFLHLTVK 110
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A
{Acinetobacter glutaminasificans} SCOP: c.88.1.1
Length = 331
Score = 27.3 bits (61), Expect = 1.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 85 DTMDETSYVLNYMFP 99
DTM+ET++ LN +
Sbjct: 93 DTMEETAFFLNLVVH 107
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus
horikoshii} PDB: 1wnf_A
Length = 328
Score = 27.1 bits (61), Expect = 1.1
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 85 DTMDETSYVLNYMFPLVNK 103
DTM ++ +L++M
Sbjct: 84 DTMAYSASMLSFMLRNPPI 102
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 26.8 bits (60), Expect = 1.2
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 9 NRSLKRFPPGIPIE-QRLALQD-QLTLLILKVIHAYPRLRY 47
++ L P GIP RL L+ +L L V +L
Sbjct: 16 SKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTK 56
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR,
leucine-rich repeat, LRR, system; 2.10A {Petromyzon
marinus}
Length = 174
Score = 26.8 bits (60), Expect = 1.4
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 9 NRSLKRFPPGIPIE-QRLALQD-QLTLL 34
N L P GIP + QRL L + Q+T L
Sbjct: 21 NIRLASVPAGIPTDKQRLWLNNNQITKL 48
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo
sapiens}
Length = 220
Score = 26.5 bits (59), Expect = 1.8
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 9 NRSLKRFPPGIPIE-QRLALQD-QLTLLILK-VIHAYPRLRYYQGYHDVAITFLLVVGEM 65
N+ L + P IP L L + + T+L + P+LR ++ IT + E
Sbjct: 20 NQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDI----EE 74
Query: 66 KAFRILEVLSNDHLSEN 82
AF ++ L+ N
Sbjct: 75 GAFEGASGVNEILLTSN 91
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 26.4 bits (59), Expect = 1.9
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 9 NRSLKRFPPGIPIE-QRLALQD-QLTLL 34
+SL P GIP Q L L D Q+T L
Sbjct: 18 GKSLASVPTGIPTTTQVLYLYDNQITKL 45
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase
activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Length = 331
Score = 26.3 bits (58), Expect = 2.4
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 11/117 (9%)
Query: 3 QVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAY----PRLRYYQGYHDVAITF 58
+++D+ R+ P P QL+L ++ AY + Y QG VA
Sbjct: 106 AILIDLGRTF----PTHPYFSAQLGAGQLSLY--NILKAYSLLDQEVGYCQGLSFVAGIL 159
Query: 59 LLVVGEMKAFRILEVLSNDHLSENM-RDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114
LL + E +AF++L+ L D R M + + L++ DL LE
Sbjct: 160 LLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEE 216
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Length = 124
Score = 25.7 bits (56), Expect = 2.6
Identities = 11/65 (16%), Positives = 24/65 (36%)
Query: 42 YPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLSENMRDTMDETSYVLNYMFPLV 101
+ Q Y D+ + + +K ++ LS+ + M + E + + +
Sbjct: 19 RENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKI 78
Query: 102 NKRSS 106
N SS
Sbjct: 79 NTESS 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 26.1 bits (58), Expect = 3.0
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 9 NRSLKRFPPGIPIE-QRLALQD-QLTLLILKVIHAYPRLRY 47
++ L P IP + ++L LQ +L+ L K H +LR
Sbjct: 25 SKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRL 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 25.9 bits (57), Expect = 3.5
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 9 NRSLKRFPPGIPIE-QRLALQD-QLTLLILKVIHAYPRLRYYQGYHDVAITFLLVVGEMK 66
++L+ P GI + L L + Q+ ++ + L Q + I + E+
Sbjct: 52 RKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTI----EIG 106
Query: 67 AFRILEVLSNDHLSEN 82
AF L L+ L +N
Sbjct: 107 AFNGLANLNTLELFDN 122
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 25.9 bits (57), Expect = 4.1
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 9 NRSLKRFPPGIPIE-QRLALQD-QLTLLILKVIHAYPRLRY 47
+ SL P G+ + L L + ++T + + L+
Sbjct: 40 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQA 80
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 25.3 bits (56), Expect = 5.4
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 69 RILEVLSN---DHLSENMRDTMDETSYVLNYMF 98
R+L ++N + + TMDE L Y+F
Sbjct: 32 RVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIF 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo
sapiens}
Length = 520
Score = 25.2 bits (55), Expect = 5.7
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 2 SQVVLDV-NRSLKRFPPGIPIE-QRLALQD-QLTLLILKVIHAYPRLRY 47
S+ ++D L P + + L + ++ L I + +LR
Sbjct: 1 SEFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRI 49
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS
protein structure initiative, joint center for
structural G transferase; HET: PLP; 1.90A {Thermotoga
maritima} SCOP: c.67.1.1
Length = 389
Score = 25.2 bits (56), Expect = 6.0
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 96 YMFPLVNKRSSDLCEFL 112
Y+F V CE L
Sbjct: 328 YLFFKVRGDDVKFCERL 344
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics
consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 25.0 bits (55), Expect = 7.1
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
Query: 2 SQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAY----PRLRYYQGYHDVAIT 57
S + D++R+ P + Q +L K+ AY + Y QG +A
Sbjct: 71 SVITRDIHRTF----PAHDYFKDTGGDGQESLY--KICKAYSVYDEDIGYCQGQSFLAAV 124
Query: 58 FLLVVGEMKAFRILEVLSNDHLSENM-RDTMDETSYVLNYMFPLVNKRSSDLCEFLER 114
LL + E +AF +L + D+ ++ R+ ++ + L+ ++ DL
Sbjct: 125 LLLHMPEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSD 182
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 24.9 bits (55), Expect = 7.5
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 69 RILEVLSN---DHLSENMRDTMDETSYVLNYMF 98
R+L+ +S HL MD+ + Y+F
Sbjct: 33 RVLDAMSRPILGHLHPETLKIMDDIKEGVRYLF 65
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 25.0 bits (55), Expect = 7.6
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 69 RILEVLSN---DHLSENMRDTMDETSYVLNYMF 98
R+L V+S M+ET +L +F
Sbjct: 25 RVLRVMSTPVVGQFDPAFTGIMNETMEMLRELF 57
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 24.8 bits (55), Expect = 7.7
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 94 LNYMFPLVNKRSSDLCEFLER 114
L M P++ + L L R
Sbjct: 120 LKEMVPIIAQYGDVLVRNLRR 140
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative,
joint CE structural genomics; HET: PLP; 1.70A {Nostoc
SP} SCOP: c.67.1.3
Length = 393
Score = 24.9 bits (55), Expect = 7.8
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 69 RILEVLSN---DHLSENMRDTMDETSYVLNYMF 98
+L+ ++ HL MDE +L Y++
Sbjct: 48 SVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVW 80
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 24.9 bits (55), Expect = 8.0
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 3/33 (9%)
Query: 69 RILEVLSN---DHLSENMRDTMDETSYVLNYMF 98
R+ + L HL + L +F
Sbjct: 14 RVQKALLRPMRGHLDPEVLRVNRAIQERLAALF 46
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A
{Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A*
3pga_1
Length = 337
Score = 24.8 bits (55), Expect = 8.4
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 85 DTMDETSYVLNYM 97
DT++ET+Y LN +
Sbjct: 101 DTLEETAYFLNLV 113
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM;
1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 24.5 bits (54), Expect = 8.7
Identities = 2/33 (6%), Positives = 6/33 (18%), Gaps = 3/33 (9%)
Query: 69 RILEVLSN---DHLSENMRDTMDETSYVLNYMF 98
+L L + ++
Sbjct: 23 EVLRGLGRTVLYDYDPAFQLLYEKVVDKAQKAM 55
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 24.8 bits (54), Expect = 9.6
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 9 NRSLKRFPPGIPIE-QRLALQD-QLTLLILKVIHAYPRLRY 47
NR+L P +P + L+L ++ L + I LR
Sbjct: 40 NRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRV 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.407
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,716,217
Number of extensions: 92255
Number of successful extensions: 293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 62
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)