RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8434
         (114 letters)



>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 194

 Score = 31.4 bits (70), Expect = 0.015
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 1   YSQVVLDVNRSLKRFPPGIPIEQRLALQDQLTLLILKVIHAYPRLRYYQGYHDVAITFLL 60
           + Q+ +D+ R+     P IP+ Q  ++Q+ L  ++      +P   Y QG +D+   F  
Sbjct: 86  WHQIEIDIPRTN----PHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFE 141

Query: 61  VVGEMKAF 68
                   
Sbjct: 142 TFLTEYLP 149


>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
          glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 266

 Score = 28.1 bits (61), Expect = 0.21
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 9  NRSLKRFPPGIPIE-QRLALQD-QLTLLILKVIHAYPRLRY 47
           R+L   PP +P +   L L +  L    L  +  Y RL  
Sbjct: 19 KRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ 59


>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor,
          Ngr) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 284

 Score = 27.5 bits (59), Expect = 0.38
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 9  NRSLKRFPPGIPIE-QRLALQD-QLTLLILKVIHAYPRLRYYQGYH 52
           + L+  P GIP   QR+ L   +++ +      A   L     + 
Sbjct: 20 QQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65


>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3
          (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 124

 Score = 26.1 bits (57), Expect = 0.82
 Identities = 6/39 (15%), Positives = 15/39 (38%)

Query: 42 YPRLRYYQGYHDVAITFLLVVGEMKAFRILEVLSNDHLS 80
               + Q Y D+ +   +    +K  ++   LS+  + 
Sbjct: 19 RENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIR 57


>d2ocda1 c.88.1.1 (A:2-337) Asparaginase type II {Vibrio cholerae
           [TaxId: 666]}
          Length = 336

 Score = 24.4 bits (52), Expect = 4.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 85  DTMDETSYVLNYMFPLVNK 103
           DTM  T+  L++MF  + K
Sbjct: 91  DTMAYTASALSFMFENLGK 109


>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 305

 Score = 24.2 bits (51), Expect = 4.6
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 9  NRSLKRFPPGIPIE-QRLALQD-QLTLLILKVIHAYPRLRY 47
          +  L++ P  +P +   L LQ+ ++T +          L  
Sbjct: 19 DLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.142    0.407 

Gapped
Lambda     K      H
   0.267   0.0487    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 408,835
Number of extensions: 16903
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 7
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.5 bits)