BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8436
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
++T ++GP LGFSIVGG SP G+L I+VKT+F G A+E+ +L+ GD+IIA+NG
Sbjct: 28 SITLERGP--DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS 85
Query: 283 LENKTHAEAIAMFK 296
LE TH EA+A+ K
Sbjct: 86 LEGVTHEEAVAILK 99
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 20 IYIERQDGGAHFS------------PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
I +ER G FS P + + GA DGR GD++I VN + L+G
Sbjct: 29 ITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEG 88
Query: 68 LTIQEAREALNNKDSHVEIVI 88
+T +EA L V +++
Sbjct: 89 VTHEEAVAILKRTKGTVTLMV 109
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
S+ + TV +KGP SLG SI GG SP G++ IF+ + +G AA+ +KLR GD I+
Sbjct: 22 SMGLRTVEMKKGP-TDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVT 80
Query: 278 INGVPLENKTHAEAIAMFKD 297
I G E TH +A+ + K+
Sbjct: 81 ICGTSTEGMTHTQAVNLLKN 100
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 12 KDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
K ++ LGI I G P I+ + P G + + VGD ++ + +G+T
Sbjct: 32 KGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTH 91
Query: 71 QEAREALNNKDSHVEIVICRNPDDAKSA 98
+A L N +E+ + D ++++
Sbjct: 92 TQAVNLLKNASGSIEMQVVAGGDVSETS 119
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G+ LG SIVGG+D+P I + +++ G AA + +L GD+I+ +NGV L N +H E
Sbjct: 26 GRSGLGLSIVGGKDTPLN--AIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEE 83
Query: 291 AIAMFKDIFPQSSKL 305
AI + PQ +L
Sbjct: 84 AITALRQT-PQKVRL 97
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 43 GAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRN 91
GA RDGR GD++++VN L+ + +EA AL V +V+ R+
Sbjct: 54 GAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRD 102
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+ +GP LGF+IVGG D + GI+V I ++G AA + +L+EGD+I+++NG
Sbjct: 13 INLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ 70
Query: 282 PLENKTHAEAIAMFKD 297
L+N H +A+ +F++
Sbjct: 71 DLKNLLHQDAVDLFRN 86
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 14/72 (19%)
Query: 15 SNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
SN+ GIY+ R I+ GA DGR GD+++ VN + LK L Q+A
Sbjct: 36 SNDSGIYVSR--------------IKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 81
Query: 75 EALNNKDSHVEI 86
+ N V +
Sbjct: 82 DLFRNAGYAVSL 93
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G LGF+IVGG D GIFV I G A + +LR GD I+++NGV L N TH +
Sbjct: 24 GSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQ 79
Query: 291 AIAMFK 296
A A K
Sbjct: 80 AAAALK 85
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 28/68 (41%)
Query: 27 GGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEI 86
GG +S I GG G GD ++ VN L+ T ++A AL V I
Sbjct: 34 GGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI 93
Query: 87 VICRNPDD 94
V P++
Sbjct: 94 VAQYRPEE 101
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+ +GP LGF+IVGG D + GI+V I ++G AA + +L+EGD+I+++NG
Sbjct: 21 INLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ 78
Query: 282 PLENKTHAEAIAMFKD 297
L+N H +A+ +F++
Sbjct: 79 DLKNLLHQDAVDLFRN 94
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 14/72 (19%)
Query: 15 SNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
SN+ GIY+ R I+ GA DGR GD+++ VN + LK L Q+A
Sbjct: 44 SNDSGIYVSR--------------IKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 89
Query: 75 EALNNKDSHVEI 86
+ N V +
Sbjct: 90 DLFRNAGYAVSL 101
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G LGF+IVGG D GIFV I G A + +LR GD I+++NGV L N TH +
Sbjct: 21 GSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQ 76
Query: 291 AIAMFK 296
A A K
Sbjct: 77 AAAALK 82
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 28/68 (41%)
Query: 27 GGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEI 86
GG +S I GG G GD ++ VN L+ T ++A AL V I
Sbjct: 31 GGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTI 90
Query: 87 VICRNPDD 94
V P++
Sbjct: 91 VAQYRPEE 98
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 225 TFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLE 284
T + G+ LG SIVGG D+ G I + +++ G A ++ +L GD+I+ +NG+ L
Sbjct: 7 TIEISKGRTGLGLSIVGGSDTLLG--AIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLR 64
Query: 285 NKTHAEAIAMFKDIFPQSSKLS 306
TH EAI + + PQ +L+
Sbjct: 65 KATHDEAINVLRQT-PQRVRLT 85
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 35 LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDD 94
+I + GA +DGR GD++++VN L+ T EA L V + + R+
Sbjct: 33 IIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAP 92
Query: 95 AKS 97
KS
Sbjct: 93 YKS 95
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 55.5 bits (132), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+ +GP LGF+IVGG D + GI+V I ++G AA + +L+EGD+I+++NG
Sbjct: 11 INLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQ 68
Query: 282 PLENKTHAEAIAMFKD 297
L+N H +A+ +F++
Sbjct: 69 DLKNLLHQDAVDLFRN 84
Score = 34.7 bits (78), Expect = 0.061, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 14/65 (21%)
Query: 15 SNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
SN+ GIY+ R I+ GA DGR GD+++ VN + LK L Q+A
Sbjct: 34 SNDSGIYVSR--------------IKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 79
Query: 75 EALNN 79
+ N
Sbjct: 80 DLFRN 84
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 211 VKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEK 268
V R K + + + KGP K LGFSI GG + G+ I+V I + G A ++ +
Sbjct: 145 VMRRKPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGR 202
Query: 269 LREGDEIIAINGVPLENKTHAEAIAMFKDIF 299
L+ GD+I+A+N V LE+ H +A+A K+ +
Sbjct: 203 LQIGDKILAVNSVGLEDVMHEDAVAALKNTY 233
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G LGF+IVGG D GIF+ I G A + +LR+GD+I+++NGV L N +H +
Sbjct: 316 GSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 371
Query: 291 AIAMFKD 297
A K+
Sbjct: 372 AAIALKN 378
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 231 GQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
G LGFSI GG D+P + IF+ I G AA++ +LR D I+ +N V + TH
Sbjct: 68 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 127
Query: 289 AEAIAMFKD 297
+ A+ K+
Sbjct: 128 SAAVEALKE 136
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 35 LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDD 94
I+ I PGGA +DGR V D ++ VN+ ++ +T A EAL S V + + R
Sbjct: 92 FITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPP 151
Query: 95 AKSATNCDNLQPNPKNL 111
A+ L PK L
Sbjct: 152 AEKVMEI-KLIKGPKGL 167
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 18 LGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
LG I G H S Y+ IE GGA H+DGR +GD+++ VN L+ + ++A
Sbjct: 167 LGFSIAGGVGNQHIPGDNSIYVTKIIE-GGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 225
Query: 74 REALNNKDSHVEIVICR 90
AL N V + + +
Sbjct: 226 VAALKNTYDVVYLKVAK 242
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 27 GGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEI 86
GG IS I GG G GD+++ VN L+ + ++A AL N V I
Sbjct: 326 GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI 385
Query: 87 VICRNPDD 94
+ P++
Sbjct: 386 IAQYKPEE 393
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 211 VKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEK 268
V R K + + + KGP K LGFSI GG + G+ I+V I + G A ++ +
Sbjct: 98 VMRRKPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGR 155
Query: 269 LREGDEIIAINGVPLENKTHAEAIAMFKDIF 299
L+ GD+I+A+N V LE+ H +A+A K+ +
Sbjct: 156 LQIGDKILAVNSVGLEDVMHEDAVAALKNTY 186
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLG----IFVKTIFQSGQAAENEKLREGD 273
S+ +T ++G LGFSI GG D+P ++G IF+ I G AA++ +LR D
Sbjct: 10 SMEYEEITLERG--NSGLGFSIAGGTDNP--HIGDDPSIFITKIIPGGAAAQDGRLRVND 65
Query: 274 EIIAINGVPLENKTHAEAIAMFKD 297
I+ +N V + TH+ A+ K+
Sbjct: 66 SILFVNEVDVREVTHSAAVEALKE 89
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 20 IYIERQDGGAHFS-------PYL-------ISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
I +ER + G FS P++ I+ I PGGA +DGR V D ++ VN+ +
Sbjct: 16 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 75
Query: 66 KGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNL 111
+ +T A EAL S V + + R A+ L PK L
Sbjct: 76 REVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEI-KLIKGPKGL 120
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 18 LGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
LG I G H S Y+ IE GGA H+DGR +GD+++ VN L+ + ++A
Sbjct: 120 LGFSIAGGVGNQHIPGDNSIYVTKIIE-GGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 178
Query: 74 REALNN 79
AL N
Sbjct: 179 VAALKN 184
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 55.1 bits (131), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 215 KSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREG 272
K +S + + KGP K LGFSI GG + G+ I+V I + G A ++ KL+ G
Sbjct: 3 KPVSEKIMEIKLIKGP--KGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIG 60
Query: 273 DEIIAINGVPLENKTHAEAIAMFKD 297
D+++A+N V LE TH EA+ K+
Sbjct: 61 DKLLAVNNVALEEVTHEEAVTALKN 85
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 18 LGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
LG I G H+ S Y+ IE GGA H+DG+ +GD+L+ VN+ L+ +T +EA
Sbjct: 21 LGFSIAGGVGNQHWPGDNSIYVTKIIE-GGAAHKDGKLQIGDKLLAVNNVALEEVTHEEA 79
Query: 74 REALNNKDSHVEIVICR 90
AL N V + + +
Sbjct: 80 VTALKNTSDFVYLKVAK 96
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 230 PGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENK-TH 288
P LGFS+VG R +G LGIFV+ I + A + +L+E D+I+AING L+ TH
Sbjct: 29 PPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITH 88
Query: 289 AEAIAMFK 296
+AI++ +
Sbjct: 89 QQAISILQ 96
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 15/88 (17%)
Query: 5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
F V + ++ ELGI+++ I+ G HRDGR D+++ +N +
Sbjct: 36 FSVVGLRSENRGELGIFVQE--------------IQEGSVAHRDGRLKETDQILAINGQA 81
Query: 65 L-KGLTIQEAREALNNKDSHVEIVICRN 91
L + +T Q+A L V++VI R
Sbjct: 82 LDQTITHQQAISILQKAKDTVQLVIARG 109
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
F V K G SLG S+ GG ++ + GI+VK I G A + ++ +GD ++A+NGV
Sbjct: 14 FEVELAKTDG--SLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGV 71
Query: 282 PLENKTHAEAIAMFKD 297
LE TH +A+ ++
Sbjct: 72 SLEGATHKQAVETLRN 87
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 30 HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVI 88
H Y + I P GA DGR H GD ++ VN L+G T ++A E L N V +++
Sbjct: 39 HGGIY-VKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 96
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 215 KSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREG 272
K +S + + KGP K LGFSI GG + G+ I+V I + G A ++ KL+ G
Sbjct: 4 KPVSEKIMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIG 61
Query: 273 DEIIAINGVPLENKTHAEAIAMFKD 297
D+++A+N V LE TH EA+ K+
Sbjct: 62 DKLLAVNNVCLEEVTHEEAVTALKN 86
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 18 LGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
LG I G H S Y+ IE GGA H+DG+ +GD+L+ VN+ L+ +T +EA
Sbjct: 22 LGFSIAGGVGNQHIPGDNSIYVTKIIE-GGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 80
Query: 74 REALNNKDSHVEIVICR 90
AL N V + + +
Sbjct: 81 VTALKNTSDFVYLKVAK 97
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 211 VKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEK 268
V R K + + + KGP K LGFSI GG + G+ I+V I + G A ++ +
Sbjct: 91 VMRRKPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGR 148
Query: 269 LREGDEIIAINGVPLENKTHAEAIAMFKDIF 299
L+ GD+I+A+N V LE+ H +A+A K+ +
Sbjct: 149 LQIGDKILAVNSVGLEDVMHEDAVAALKNTY 179
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLG----IFVKTIFQSGQAAENEKLRE 271
S S+ +T ++G LGFSI GG D+P ++G IF+ I G AA++ +LR
Sbjct: 1 SGSMEYEEITLERG--NSGLGFSIAGGTDNP--HIGDDPSIFITKIIPGGAAAQDGRLRV 56
Query: 272 GDEIIAINGVPLENKTHAEAIAMFKD 297
D I+ +N V + TH+ A+ K+
Sbjct: 57 NDSILFVNEVDVREVTHSAAVEALKE 82
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 20 IYIERQDGGAHFS-------PYL-------ISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
I +ER + G FS P++ I+ I PGGA +DGR V D ++ VN+ +
Sbjct: 9 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 68
Query: 66 KGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNL 111
+ +T A EAL S V + + R A+ L PK L
Sbjct: 69 REVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEI-KLIKGPKGL 113
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 18 LGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
LG I G H S Y+ IE GGA H+DGR +GD+++ VN L+ + ++A
Sbjct: 113 LGFSIAGGVGNQHIPGDNSIYVTKIIE-GGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 171
Query: 74 REALNNKDSHVEIVICRNPDDAKS 97
AL N V + + + P +A++
Sbjct: 172 VAALKNTYDVVYLKVAK-PSNAET 194
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 211 VKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEK 268
V R K + + + KGP K LGFSI GG + G+ I+V I + G A ++ +
Sbjct: 88 VMRRKPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGR 145
Query: 269 LREGDEIIAINGVPLENKTHAEAIAMFKDIF 299
L+ GD+I+A+N V LE+ H +A+A K+ +
Sbjct: 146 LQIGDKILAVNSVGLEDVMHEDAVAALKNTY 176
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLG----IFVKTIFQSGQAAENEKLREGDEIIAIN 279
+T ++G LGFSI GG D+P ++G IF+ I G AA++ +LR D I+ +N
Sbjct: 6 ITLERG--NSGLGFSIAGGTDNP--HIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVN 61
Query: 280 GVPLENKTHAEAIAMFKD 297
V + TH+ A+ K+
Sbjct: 62 EVDVREVTHSAAVEALKE 79
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 20 IYIERQDGGAHFS-------PYL-------ISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
I +ER + G FS P++ I+ I PGGA +DGR V D ++ VN+ +
Sbjct: 6 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
Query: 66 KGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNL 111
+ +T A EAL S V + + R A+ L PK L
Sbjct: 66 REVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEI-KLIKGPKGL 110
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 18 LGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
LG I G H S Y+ IE GGA H+DGR +GD+++ VN L+ + ++A
Sbjct: 110 LGFSIAGGVGNQHIPGDNSIYVTKIIE-GGAAHKDGRLQIGDKILAVNSVGLEDVMHEDA 168
Query: 74 REALNNKDSHVEIVICR 90
AL N V + + +
Sbjct: 169 VAALKNTYDVVYLKVAK 185
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 54.3 bits (129), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
F V K G SLG S+ GG ++ + GI+VK I G A + ++ +GD ++A+NGV
Sbjct: 6 FEVELAKTDG--SLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGV 63
Query: 282 PLENKTHAEAIAMFKD 297
LE TH +A+ ++
Sbjct: 64 SLEGATHKQAVETLRN 79
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 36 ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVI 88
+ I P GA DGR H GD ++ VN L+G T ++A E L N V +++
Sbjct: 36 VKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 88
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G LGF+IVGG D GIF+ I G A + +LR+GD+I+++NGV L N +H +
Sbjct: 23 GSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 78
Query: 291 AIAMFKD 297
A K+
Sbjct: 79 AAIALKN 85
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
V+ S LG I GG IS I GG G GD+++ VN L+ +
Sbjct: 19 VIHRGSTGLGFNIV---GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 75
Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
++A AL N V I+ P++
Sbjct: 76 HEQAAIALKNAGQTVTIIAQYKPEE 100
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
+ + KGP K LGFSI GG + G+ I+V +I + G A ++ KL+ GD+++A+
Sbjct: 4 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAV 61
Query: 279 NGVPLENKTHAEAIAMFKD 297
N V LE TH EA+ K+
Sbjct: 62 NSVGLEEVTHEEAVTALKN 80
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 18 LGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
LG I G H S Y+ S +E GGA H+DG+ +GD+L+ VN L+ +T +EA
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTSIVE-GGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEA 74
Query: 74 REALNNKDSHVEIVICR 90
AL N V + + +
Sbjct: 75 VTALKNTSDFVYLKVAK 91
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
FTV +KG K GFSI GGR+ + ++V + + G A N ++R GD+II ING
Sbjct: 13 FTVDMEKGA--KGFGFSIRGGREY---KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGE 67
Query: 282 PLENKTHAEAIAMFK 296
+ THA AI + K
Sbjct: 68 STRDMTHARAIELIK 82
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 34 YLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD 93
Y++ E G AI R+GR VGD++I++N + + +T A E + + V +++ R
Sbjct: 39 YVLRLAEDGPAI-RNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTG 97
Query: 94 DAKSA 98
S+
Sbjct: 98 SGPSS 102
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
+ + KGP K LGFSI GG + G+ I+V I + G A ++ KL+ GD+++A+
Sbjct: 4 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 279 NGVPLENKTHAEAIAMFKD 297
N V LE TH EA+ K+
Sbjct: 62 NSVSLEEVTHEEAVTALKN 80
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 18 LGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
LG I G H S Y+ IE GGA H+DG+ +GD+L+ VN L+ +T +EA
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIE-GGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEA 74
Query: 74 REALNNKDSHVEIVICR 90
AL N V + + +
Sbjct: 75 VTALKNTSDFVYLKVAK 91
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 234 SLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIA 293
SLG S+ GG ++ + GI+VK + G A + ++ +GD ++A+NGV LE TH +A+
Sbjct: 17 SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 76
Query: 294 MFKD 297
++
Sbjct: 77 TLRN 80
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 7 VFRV-VKDDSNELGIYIERQDGGAHFS----PYLISHIEPGGAIHRDGRFHVGDELIKVN 61
+F V + + N LGI + GG + S + + P GA DGR H GD ++ VN
Sbjct: 6 IFEVELAKNDNSLGISVT---GGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN 62
Query: 62 DKRLKGLTIQEAREALNNKDSHVEIVI 88
L+G T ++A E L N V +++
Sbjct: 63 GVSLEGATHKQAVETLRNTGQVVHLLL 89
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With Ra-Gef2
Peptide
Length = 96
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 234 SLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIA 293
SLG S+ GG ++ + GI+VK + G A + ++ +GD ++A+NGV LE TH +A+
Sbjct: 17 SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 76
Query: 294 MFKD 297
++
Sbjct: 77 TLRN 80
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 7 VFRV-VKDDSNELGIYIERQDGGAHFS----PYLISHIEPGGAIHRDGRFHVGDELIKVN 61
+F V + + N LGI + GG + S + + P GA DGR H GD ++ VN
Sbjct: 6 IFEVELAKNDNSLGISVT---GGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN 62
Query: 62 DKRLKGLTIQEAREALNNKDSHVEIVI 88
L+G T ++A E L N V +++
Sbjct: 63 GVSLEGATHKQAVETLRNTGQVVHLLL 89
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G LGF+I+GG D GIF+ I G A + +LR+GD+I+++NGV L N +H +
Sbjct: 23 GSTGLGFNIIGGEDGE----GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 78
Query: 291 AIAMFKD 297
A K+
Sbjct: 79 AAIALKN 85
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
V+ S LG I GG IS I GG G GD+++ VN L+ +
Sbjct: 19 VIHRGSTGLGFNI---IGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 75
Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
++A AL N V I+ P++
Sbjct: 76 HEQAAIALKNAGQTVTIIAQYKPEE 100
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 231 GQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
G K LGFSI GG + G+ I+V I + G A ++ KL+ GD+++A+N V LE TH
Sbjct: 11 GSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTH 70
Query: 289 AEAIAMFKD 297
EA+ K+
Sbjct: 71 EEAVTALKN 79
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 9 RVVKDDSNELGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
+V S LG I G H+ S Y+ IE GGA H+DG+ +GD+L+ VN+
Sbjct: 6 HLVPRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIE-GGAAHKDGKLQIGDKLLAVNNVA 64
Query: 65 LKGLTIQEAREALNNKDSHVEIVICR 90
L+ +T +EA AL N V + + +
Sbjct: 65 LEEVTHEEAVTALKNTSDFVYLKVAK 90
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
+ + KGP K LGFSI GG + G+ I+V I + G A ++ KL+ GD+++A+
Sbjct: 4 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 279 NGVPLENKTHAEAIAMFKD 297
N V LE TH EA+ K+
Sbjct: 62 NSVCLEEVTHEEAVTALKN 80
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 18 LGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
LG I G H S Y+ IE GGA H+DG+ +GD+L+ VN L+ +T +EA
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIE-GGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEA 74
Query: 74 REALNNKDSHVEIVICR 90
AL N V + + +
Sbjct: 75 VTALKNTSDFVYLKVAK 91
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
S+ +TV ++G K GFS+ GGR+ N+ ++V + + G A + K+R GDEI+
Sbjct: 22 SMDFYTVELERGA--KGFGFSLRGGREY---NMDLYVLRLAEDGPAERSGKMRIGDEILE 76
Query: 278 INGVPLENKTHAEAIAMFKD 297
ING +N H+ AI + K+
Sbjct: 77 INGETTKNMKHSRAIELIKN 96
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 34 YLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
Y++ E G A R G+ +GDE++++N + K + A E + N V + + R
Sbjct: 52 YVLRLAEDGPA-ERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKR 107
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
+ + KGP K LGFSI GG + G+ I+V I + G A ++ KL+ GD+++A+
Sbjct: 4 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 279 NGVPLENKTHAEAIAMFKD 297
N V LE TH EA+ K+
Sbjct: 62 NSVGLEEVTHEEAVTALKN 80
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 18 LGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
LG I G H S Y+ IE GGA H+DG+ +GD+L+ VN L+ +T +EA
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIE-GGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEA 74
Query: 74 REALNNKDSHVEIVICR 90
AL N V + + +
Sbjct: 75 VTALKNTSDFVYLKVAK 91
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 228 KGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
KGP K LGFSI GG + G+ I+V I + G A ++ KL+ GD+++A+N V LE
Sbjct: 6 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEE 63
Query: 286 KTHAEAIAMFKD 297
TH EA+ K+
Sbjct: 64 VTHEEAVTALKN 75
Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 18 LGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
LG I G H S Y+ IE GGA H+DG+ +GD+L+ VN L+ +T +EA
Sbjct: 11 LGFSIAGGVGNQHIPGDNSIYVTKIIE-GGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEA 69
Query: 74 REALNNKDSHV 84
AL N V
Sbjct: 70 VTALKNTSDFV 80
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
+ + KGP K LGFSI GG + G+ I+V I + G A ++ KL+ GD+++A+
Sbjct: 12 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 69
Query: 279 NGVPLENKTHAEAIAMFKD 297
N V LE TH EA+ K+
Sbjct: 70 NNVCLEEVTHEEAVTALKN 88
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 18 LGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
LG I G H S Y+ IE GGA H+DG+ +GD+L+ VN+ L+ +T +EA
Sbjct: 24 LGFSIAGGVGNQHIPGDNSIYVTKIIE-GGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEA 82
Query: 74 REALNNKDSHVEIVICR 90
AL N V + + +
Sbjct: 83 VTALKNTSDFVYLKVAK 99
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 228 KGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
KGP K LGFSI GG + G+ I+V I + G A ++ +L+ GD+I+A+N V LE+
Sbjct: 11 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLED 68
Query: 286 KTHAEAIAMFKDIF 299
H +A+A K+ +
Sbjct: 69 VMHEDAVAALKNTY 82
Score = 38.1 bits (87), Expect = 0.006, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 36 ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN 79
++ I GGA H+DGR +GD+++ VN L+ + ++A AL N
Sbjct: 37 VTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN 80
>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like
Protein
Length = 128
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 230 PGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL-ENKTH 288
P LGFS+V R G + IFVK + A +++L+E D+I+AIN PL +N +H
Sbjct: 34 PSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISH 93
Query: 289 AEAIAMFK 296
+AIA+ +
Sbjct: 94 QQAIALLQ 101
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 52.4 bits (124), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 228 KGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
KGP K LGFSI GG + G+ I+V I + G A ++ KL+ GD+++A+N V LE
Sbjct: 7 KGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEE 64
Query: 286 KTHAEAIAMFKD 297
TH EA+ K+
Sbjct: 65 VTHEEAVTALKN 76
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 36 ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
++ I GGA H+DG+ +GD+L+ VN+ L+ +T +EA AL N V + + +
Sbjct: 33 VTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAK 87
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEI 275
S+++ + KGP K LGFSI GG + G+ I+V I G A ++ +L+ GD +
Sbjct: 22 SMTVVEIKLFKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRL 79
Query: 276 IAINGVPLENKTHAEAIAMFKD 297
+ +N LE TH EA+A+ K+
Sbjct: 80 LMVNNYSLEEVTHEEAVAILKN 101
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 36 ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
++ I GGA +DGR VGD L+ VN+ L+ +T +EA L N V + + +
Sbjct: 58 VTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK 112
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEI 275
S+++ V KGP K LGFSI GG + G+ I++ I + G A ++ +L+ GD +
Sbjct: 1 SMTIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRL 58
Query: 276 IAINGVPLENKTHAEAIAMFKD 297
+A+N L++ H EA+A K+
Sbjct: 59 LAVNNTNLQDVRHEEAVASLKN 80
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 18 LGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
LG I G H S Y+ IE GGA +DGR +GD L+ VN+ L+ + +EA
Sbjct: 16 LGFSIAGGIGNQHIPGDNSIYITKIIE-GGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEA 74
Query: 74 REALNNKDSHVEIVICR 90
+L N V + + +
Sbjct: 75 VASLKNTSDMVYLKVAK 91
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 52.0 bits (123), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
T+ QK PG K LG SIVG R+ + G+FV I + G A + +L +GD+I+ +NG
Sbjct: 6 LTIGLQKKPG-KGLGLSIVGKRN----DTGVFVSDIVKGGIADADGRLMQGDQILMVNGE 60
Query: 282 PLENKTHAEAIAMFK 296
+ N T A+ K
Sbjct: 61 DVRNATQEAVAALLK 75
Score = 30.8 bits (68), Expect = 0.90, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 18 LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL 77
L I +R D G +S I GG DGR GD+++ VN + ++ T QEA AL
Sbjct: 20 LSIVGKRNDTGV-----FVSDIVKGGIADADGRLMQGDQILMVNGEDVRNAT-QEAVAAL 73
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G LGF+IVGG D GIFV I G A + +L+ GD+I+++NG+ L +H +
Sbjct: 12 GSTGLGFNIVGGEDGE----GIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQ 67
Query: 291 AIAMFK 296
A A K
Sbjct: 68 AAAALK 73
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
V+ S LG I GG +S I GG G GD+++ VN L+G +
Sbjct: 8 VLHKGSTGLGFNIV---GGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGAS 64
Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
++A AL V I+ P+D
Sbjct: 65 HEQAAAALKGAGQTVTIIAQYQPED 89
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G LGF+IVGG GIF+ I G A + +LR+GD+I+++NGV L N +H +
Sbjct: 15 GSTGLGFNIVGGEXGE----GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 70
Query: 291 AIAMFKD 297
A K+
Sbjct: 71 AAIALKN 77
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
V+ S LG I GG IS I GG G GD+++ VN L+ +
Sbjct: 11 VIHRGSTGLGFNIV---GGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 67
Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
++A AL N V I+ P++
Sbjct: 68 HEQAAIALKNAGQTVTIIAQYKPEE 92
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 232 QKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
++ LGFSI GG+ S G+ GIFV I + G A L+ GD +++INGV + H
Sbjct: 17 ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARH 76
Query: 289 AEAIAMFKDIFPQSSKL 305
A+++ P + L
Sbjct: 77 DHAVSLLTAASPTIALL 93
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 17/73 (23%)
Query: 27 GGAHFSPY-------LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN 79
GG +PY +S I GGA HR G VGD ++ +N G+ + EAR
Sbjct: 26 GGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSIN-----GVDVTEARH---- 76
Query: 80 KDSHVEIVICRNP 92
D V ++ +P
Sbjct: 77 -DHAVSLLTAASP 88
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G LGF+IVGG GIF+ I G A + +LR+GD+I+++NGV L N +H +
Sbjct: 20 GSTGLGFNIVGGEXGE----GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 75
Query: 291 AIAMFKD 297
A K+
Sbjct: 76 AAIALKN 82
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
V+ S LG I GG IS I GG G GD+++ VN L+ +
Sbjct: 16 VIHRGSTGLGFNIV---GGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 72
Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
++A AL N V I+ P++
Sbjct: 73 HEQAAIALKNAGQTVTIIAQYKPEE 97
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 176 KFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLS-LSMFTVTFQKGPGQKS 234
KFSC I S D++R N P ++A + K + L +F V +K +
Sbjct: 37 KFSCA--PIKVFNTYSNEDYDRRNDDVDPVAASAEYELEKRVEKLELFPVELEKD--EDG 92
Query: 235 LGFSIVG---GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
LG SI+G G D+ LGIFVKT+ + G A + +++ D+I+ ++G+ L T A
Sbjct: 93 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFA 152
Query: 292 IAMFKD 297
+ ++
Sbjct: 153 ATVLRN 158
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 3 KQFKVFRV-VKDDSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDEL 57
++ ++F V ++ D + LGI I D G + + GGA RDGR V D++
Sbjct: 77 EKLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQI 136
Query: 58 IKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
++V+ L G+T A L N +V VI R
Sbjct: 137 VEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 169
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+T ++G LGFSI GG D+P + GIF+ I G AAE+ +LR D I+ +N V
Sbjct: 13 ITLERG--NSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEV 70
Query: 282 PLENKTHAEAIAMFKD 297
+ +H++A+ K+
Sbjct: 71 DVSEVSHSKAVEALKE 86
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 20 IYIERQDGGAHFS-------PYL-------ISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
I +ER + G FS P++ I+ I PGGA DGR V D +++VN+ +
Sbjct: 13 ITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDV 72
Query: 66 KGLTIQEAREALNNKDSHVEIVICR 90
++ +A EAL S V + + R
Sbjct: 73 SEVSHSKAVEALKEAGSIVRLYVRR 97
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 13 DDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQE 72
+D + LG I G S ++ I PGG RDGR GD ++K+ ++G+T ++
Sbjct: 23 NDGSGLGFGIV----GGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQ 78
Query: 73 AREALNNKDSHVEIVICRNPDDAKSATN 100
+ L N + V +++ R+P S T+
Sbjct: 79 VAQVLRNCGNSVRMLVARDPAGDISVTS 106
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
LGF IVGG+ S G+ V+TI G A + +L+ GD I+ I G ++ T +
Sbjct: 26 SGLGFGIVGGKTS-----GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVA 80
Query: 293 AMFKD 297
+ ++
Sbjct: 81 QVLRN 85
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGR---DSPKGNL--GIFVKTIFQSGQAAENEKLREGDEII 276
T+ + G SLGF+I+GGR D+ G+ GIFV I SG AA+ L+ D II
Sbjct: 10 LTLVLHRDSG--SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67
Query: 277 AINGVPLENKTHAEAIAMFK 296
+NG L TH +A+ FK
Sbjct: 68 EVNGRDLSRATHDQAVEAFK 87
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+T ++G LGFSI GG D+P + IF+ I G AA++ +LR D I+ +N V
Sbjct: 15 ITLERG--NSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEV 72
Query: 282 PLENKTHAEAIAMFKD 297
+ + TH++A+ K+
Sbjct: 73 DVRDVTHSKAVEALKE 88
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
S I+ I GGA +DGR V D +++VN+ ++ +T +A EAL S V + + R
Sbjct: 41 SSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVEALKEAGSIVRLYVKR 99
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 48.9 bits (115), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 231 GQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
G LGFSI GG D+P + IF+ I G AA++ +LR D I+ +N V + TH
Sbjct: 11 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 70
Query: 289 AEAIAMFKD 297
+ A+ K+
Sbjct: 71 SAAVEALKE 79
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 20 IYIERQDGGAHFS-------PYL-------ISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
I +ER + G FS P++ I+ I PGGA +DGR V D ++ VN+ +
Sbjct: 6 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
Query: 66 KGLTIQEAREALNNKDSHVEIVICR 90
+ +T A EAL S V + + R
Sbjct: 66 REVTHSAAVEALKEAGSIVRLYVMR 90
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 230 PGQKSLGFSIVGGRDSPK-GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
G LG S+ G R +LGIFVK+I G A+++ +LR D++IA+NG L K +
Sbjct: 18 SGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKAN 77
Query: 289 AEAIAMFK 296
EA+ +
Sbjct: 78 QEAMETLR 85
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 3 KQFKVFRVVKDDSNELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDEL 57
++F F V +DS G+ + ++ A ++ S I GGA +DGR V D+L
Sbjct: 6 REFLTFEVPLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIIN-GGAASKDGRLRVNDQL 64
Query: 58 IKVNDKRLKGLTIQEAREAL-------NNKDSHVEIVICR 90
I VN + L G QEA E L NK +++++ R
Sbjct: 65 IAVNGESLLGKANQEAMETLRRSMSTEGNKRGMIQLIVAR 104
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 230 PGQKSLGFSIVGGRDSPK-GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
G LG S+ G R +LGIFVK+I G A+++ +LR D++IA+NG L K +
Sbjct: 15 SGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKAN 74
Query: 289 AEAIAMFK 296
EA+ +
Sbjct: 75 QEAMETLR 82
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 3 KQFKVFRVVKDDSNELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDEL 57
++F F V +DS G+ + ++ A ++ S I GGA +DGR V D+L
Sbjct: 3 REFLTFEVPLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIIN-GGAASKDGRLRVNDQL 61
Query: 58 IKVNDKRLKGLTIQEAREAL-------NNKDSHVEIVICR 90
I VN + L G QEA E L NK +++++ R
Sbjct: 62 IAVNGESLLGKANQEAMETLRRSMSTEGNKRGMIQLIVAR 101
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 235 LGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
LG IVGG++ P G +G ++ I G A + KL EG +++ NG+PL +KT+ E
Sbjct: 32 LGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEE 89
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 48.5 bits (114), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
V+ ++ + LGFSI GG + +GI+V ++ + G AE E LR GD+I+ +N L
Sbjct: 12 VSLRRAKAHEGLGFSIRGGSEH---GVGIYV-SLVEPGSLAEKEGLRVGDQILRVNDKSL 67
Query: 284 ENKTHAEAIAMFK 296
THAEA+ K
Sbjct: 68 ARVTHAEAVKALK 80
Score = 36.2 bits (82), Expect = 0.022, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 19 GIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL 77
G+ + G H +S +EPG ++G VGD++++VNDK L +T EA +AL
Sbjct: 22 GLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKAL 79
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+T ++G LGFSI GG D+P + IF+ I G AA++ +LR D I+ +N V
Sbjct: 5 ITLERG--NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV 62
Query: 282 PLENKTHAEAIAMFKD 297
+ TH+ A+ K+
Sbjct: 63 DVREVTHSAAVEALKE 78
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 20 IYIERQDGGAHFS-------PYL-------ISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
I +ER + G FS P++ I+ I PGGA +DGR V D ++ VN+ +
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
Query: 66 KGLTIQEAREALNNKDSHVEIVICR 90
+ +T A EAL S V + + R
Sbjct: 65 REVTHSAAVEALKEAGSIVRLYVMR 89
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+T ++G LGFSI GG D+P + IF+ I G AA++ +LR D I+ +N V
Sbjct: 5 ITLERG--NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV 62
Query: 282 PLENKTHAEAIAMFKD 297
+ TH+ A+ K+
Sbjct: 63 DVREVTHSAAVEALKE 78
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 20 IYIERQDGGAHFS-------PYL-------ISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
I +ER + G FS P++ I+ I PGGA +DGR V D ++ VN+ +
Sbjct: 5 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
Query: 66 KGLTIQEAREALNNKDSHVEIVICR 90
+ +T A EAL S V + + R
Sbjct: 65 REVTHSAAVEALKEAGSIVRLYVMR 89
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 48.1 bits (113), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 222 FTVTFQKGPGQKSLGFSIV-----GGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEII 276
F V K G SLG S+ GG ++ + GI+VK I G A + ++ +GD ++
Sbjct: 6 FEVELAKTDG--SLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVL 63
Query: 277 AINGVPLENKTHAEAIAMFKD 297
A+NGV LE TH +A+ ++
Sbjct: 64 AVNGVSLEGATHKQAVETLRN 84
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 36 ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVI 88
+ I P GA DGR H GD ++ VN L+G T ++A E L N V +++
Sbjct: 41 VKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 93
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 234 SLGFSIVGGRDSPKGNL-------GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENK 286
SLG SIVGG+ K L GIF+K + + A + L+ GD+I+ ++GV L+N
Sbjct: 28 SLGISIVGGQTVIK-RLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNA 86
Query: 287 THAEAIAMFKD 297
+H+EA+ K+
Sbjct: 87 SHSEAVEAIKN 97
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 47.8 bits (112), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 231 GQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
G LGFSI GG D+P + IF+ I G AA++ +LR D I+ +N + + TH
Sbjct: 10 GNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTH 69
Query: 289 AEAIAMFKD 297
++A+ K+
Sbjct: 70 SKAVEALKE 78
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
S I+ I GGA +DGR V D +++VN+ ++ +T +A EAL S V + + R
Sbjct: 31 SSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAGSIVRLYVKR 89
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 47.8 bits (112), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEI 275
S+SL++ TVT LG SIVG + + +G+ GI++ +I + G A + ++ GD +
Sbjct: 1 SMSLNIITVTLNM-EKYNFLGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDML 58
Query: 276 IAINGVPLENKTHAEAIAMFKDI 298
+ +N + EN ++ +A+ + +DI
Sbjct: 59 LQVNDMNFENMSNDDAVRVLRDI 81
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 16 NELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
N LGI I ER DGG + I I GGA+ DGR GD L++VND + ++
Sbjct: 17 NFLGISIVGQSNERGDGGIY-----IGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSN 71
Query: 71 QEAREALNN 79
+A L +
Sbjct: 72 DDAVRVLRD 80
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 231 GQKSLGFSIVGGRDSPKG-NLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHA 289
G LG S+ G + G +LGIF+K+I G A ++ +LR D++IA+NG L K++
Sbjct: 35 GSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNH 94
Query: 290 EAIAMFK 296
EA+ +
Sbjct: 95 EAMETLR 101
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 36 ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL-------NNKDSHVEIVI 88
I I GGA +DGR + D+LI VN + L G + EA E L N +++VI
Sbjct: 59 IKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVI 118
Query: 89 CR 90
R
Sbjct: 119 LR 120
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 234 SLGFSIV-----GGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
SLG S+ GG ++ + GI+VK + G A + ++ +GD ++A+NGV LE TH
Sbjct: 21 SLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATH 80
Query: 289 AEAIAMFKD 297
+A+ ++
Sbjct: 81 KQAVETLRN 89
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 5 FKVFRVVKDDSNELGIYIERQDGGAHFS----PYLISHIEPGGAIHRDGRFHVGDELIKV 60
F+V D+S + + + GG + S + + P GA DGR H GD ++ V
Sbjct: 11 FEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 70
Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVI 88
N L+G T ++A E L N V +++
Sbjct: 71 NGVSLEGATHKQAVETLRNTGQVVHLLL 98
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
+ Q G + LGFSI + G+ I+VK I G A ++ +L+ GD +I +NGV L
Sbjct: 13 LNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDL 72
Query: 284 ENKTHAEAIAMFK 296
K+ E +++ +
Sbjct: 73 AGKSQEEVVSLLR 85
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 11 VKDDSNELGIYIERQD---GGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
+K + LG I +D GG+ +P + +I P GA +DGR GD LI+VN L G
Sbjct: 17 LKKGTEGLGFSITSRDVTIGGS--APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 74
Query: 68 LTIQEAREALNNK--DSHVEIVICRNPD 93
+ +E L + + V +++ R +
Sbjct: 75 KSQEEVVSLLRSTKMEGTVSLLVFRQEE 102
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 199 NVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIF 258
N AA P A + P++L L VT +K LG SI GGR++ + I + IF
Sbjct: 58 NGAAEPGA--APPQLPEALLLQRRRVTVRKA-DAGGLGISIKGGREN---KMPILISKIF 111
Query: 259 QSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
+ A + E L GD I+++NG L + TH EA+ K
Sbjct: 112 KGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 149
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
Q + V K D+ LGI I + G + P LIS I G A + VGD ++ VN +
Sbjct: 77 QRRRVTVRKADAGGLGISI--KGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE 134
Query: 64 RLKGLTIQEAREALNNKDSHVEIVI 88
L T EA +AL K + E+V+
Sbjct: 135 DLSSATHDEAVQAL--KKTGKEVVL 157
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
+ Q G + LGFSI + G+ I+VK I G A ++ +L+ GD +I +NGV L
Sbjct: 7 LNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDL 66
Query: 284 ENKTHAEAIAMFK 296
K+ E +++ +
Sbjct: 67 AGKSQEEVVSLLR 79
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 11 VKDDSNELGIYIERQD---GGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
+K + LG I +D GG+ +P + +I P GA +DGR GD LI+VN L G
Sbjct: 11 LKKGTEGLGFSITSRDVTIGGS--APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 68
Query: 68 LTIQEAREALNNK--DSHVEIVICRNPD 93
+ +E L + + V +++ R +
Sbjct: 69 KSQEEVVSLLRSTKMEGTVSLLVFRQEE 96
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
LG SIVG + + +G+ GI++ +I + G A + ++ GD ++ +N V EN ++ +A+ +
Sbjct: 15 LGISIVG-QSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRV 73
Query: 295 FKDIFPQSSKLS 306
++I Q+ +S
Sbjct: 74 LREIVSQTGPIS 85
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 18 LGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQE 72
LGI I +R DGG + I I GGA+ DGR GD L++VND + ++ +
Sbjct: 15 LGISIVGQSNDRGDGGIY-----IGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDD 69
Query: 73 AREAL 77
A L
Sbjct: 70 AVRVL 74
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 233 KSLGFSIVGGRDS----PKGNL--GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENK 286
KSLG SIVGGR G + GIF+K + + A +N L+ GD I+ ++G+ L +
Sbjct: 16 KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDA 75
Query: 287 THAEAIAMFK 296
+H +A+ +
Sbjct: 76 SHEQAVEAIR 85
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 233 KSLGFSIVGGRDS----PKGNL--GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENK 286
KSLG SIVGGR G + GIF+K + + A +N L+ GD I+ ++G+ L +
Sbjct: 36 KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDA 95
Query: 287 THAEAI 292
+H +A+
Sbjct: 96 SHEQAV 101
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 202 ATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSG 261
+ +S AT+K+ + +++ ++G G LGFS+ GG D N I V +F +G
Sbjct: 1 GSSGSSGATLKQLDGIHVTILHK--EEGAG---LGFSLAGGADLE--NKVITVHRVFPNG 53
Query: 262 QAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
A++ +++G+E+++ING L+ TH +A+A+ +
Sbjct: 54 LASQEGTIQKGNEVLSINGKSLKGTTHHDALAILR 88
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 12 KDDSNELGIYIERQDGGAHFSPYLIS--HIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
K++ LG + GGA +I+ + P G ++G G+E++ +N K LKG T
Sbjct: 23 KEEGAGLGFSLA---GGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTT 79
Query: 70 IQEAREAL 77
+A L
Sbjct: 80 HHDALAIL 87
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
V QK PG+ SLG ++ GG + +L I+V ++ G + + +++ GD ++ ++GV
Sbjct: 27 VVNIQKDPGE-SLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVE 85
Query: 283 LENKTHAEAIAMFK 296
L + +EA+A+ K
Sbjct: 86 LTEVSRSEAVALLK 99
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 6 KVFRVVKDDSNELGIYIERQDGGAH----FSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
KV + KD LG+ + G +H Y+IS +EPGG I RDGR GD L+ V+
Sbjct: 26 KVVNIQKDPGESLGMTV--AGGASHREWDLPIYVIS-VEPGGVISRDGRIKTGDILLNVD 82
Query: 62 DKRLKGLTIQEAREALNNKDSHV 84
L ++ EA L S +
Sbjct: 83 GVELTEVSRSEAVALLKRTSSSI 105
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G + LGFSI + G+ I+VK I G A ++ +L+ GD +I +NGV L K+ E
Sbjct: 39 GTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEE 98
Query: 291 AIAMFK 296
+++ +
Sbjct: 99 VVSLLR 104
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 11 VKDDSNELGIYIERQD---GGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
+K + LG I +D GG+ +P + +I P GA +DGR GD LI+VN L G
Sbjct: 36 LKKGTEGLGFSITSRDVTIGGS--APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVG 93
Query: 68 LTIQEAREALNNK--DSHVEIVICRNPD 93
+ +E L + + V +++ R D
Sbjct: 94 KSQEEVVSLLRSTKMEGTVSLLVFRQED 121
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
VT +K PG + LGF+I GG+ S LGIF+ + A L+EGD+++A+N V
Sbjct: 19 VTLKKPPGAQ-LGFNIRGGKAS---QLGIFISKVIPDSDA-HRAGLQEGDQVLAVNDVDF 73
Query: 284 ENKTHAEAIAMFK 296
++ H++A+ + K
Sbjct: 74 QDIEHSKAVEILK 86
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 46.2 bits (108), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
LG SIVG + + +G+ GI++ +I + G A + ++ GD ++ +N V EN ++ +A+ +
Sbjct: 12 LGISIVG-QSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRV 70
Query: 295 FKDIFPQSSKLS 306
++I Q+ +S
Sbjct: 71 LREIVSQTGPIS 82
Score = 35.0 bits (79), Expect = 0.059, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 18 LGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQE 72
LGI I +R DGG + I I GGA+ DGR GD L++VND + ++ +
Sbjct: 12 LGISIVGQSNDRGDGGIY-----IGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDD 66
Query: 73 AREAL 77
A L
Sbjct: 67 AVRVL 71
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 194 DHNRSNVAATPNNSNATVKRPKSLS-LSMFTVTFQKGPGQKSLGFSIVG---GRDSPKGN 249
D++R N P ++A + K + L +F V +K + LG SI+G G D
Sbjct: 53 DYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKD--SEGLGISIIGMGAGADMGLEK 110
Query: 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
LGIFVKT+ + G A + +++ D ++ ++G L T + A ++ ++
Sbjct: 111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN 158
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 3 KQFKVFRV-VKDDSNELGIYIERQDGGAHFS----PYLISHIEPGGAIHRDGRFHVGDEL 57
++ ++F V ++ DS LGI I GA + + GGA HRDGR V D L
Sbjct: 77 ERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 136
Query: 58 IKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
++V+ L G+T A L N V +I R
Sbjct: 137 VEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 169
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 194 DHNRSNVAATPNNSNATVKRPKSLS-LSMFTVTFQKGPGQKSLGFSIVG---GRDSPKGN 249
D++R N P ++A + K + L +F V +K + LG SI+G G D
Sbjct: 53 DYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKD--SEGLGISIIGMGAGADMGLEK 110
Query: 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
LGIFVKT+ + G A + +++ D ++ ++G L T + A ++ ++
Sbjct: 111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN 158
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 3 KQFKVFRV-VKDDSNELGIYIERQDGGAHFS----PYLISHIEPGGAIHRDGRFHVGDEL 57
++ ++F V ++ DS LGI I GA + + GGA HRDGR V D L
Sbjct: 77 ERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 136
Query: 58 IKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
++V+ L G+T A L N V +I R
Sbjct: 137 VEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 169
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
SM V F+KG S+G + GG D +GIFV + + AA+ E L EGD+I+ +N
Sbjct: 1 SMKLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAK-EGLEEGDQILRVN 51
Query: 280 GVPLENKTHAEAIAMFKDI 298
V N EA+ D+
Sbjct: 52 NVDFTNIIREEAVLFLLDL 70
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
SM V F+KG S+G + GG D +GIFV + + AA+ E L EGD+I+ +N
Sbjct: 9 SMKLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAK-EGLEEGDQILRVN 59
Query: 280 GVPLENKTHAEAIAMFKDI 298
V N EA+ D+
Sbjct: 60 NVDFTNIIREEAVLFLLDL 78
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 11 VKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
++ D N LG+ + + S +++ I P G DGR +GDEL+++N++ L G +
Sbjct: 31 LEKDKNGLGLSLAGNKDRSRMSIFVVG-INPEGPAAADGRMRIGDELLEINNQILYGRSH 89
Query: 71 QEAREALNNKDSHVEIVICRNPD 93
Q A + S V++V RN D
Sbjct: 90 QNASAIIKTAPSKVKLVFIRNED 112
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
LG S+ G +D + + IFV I G AA + ++R GDE++ IN L ++H A A+
Sbjct: 38 LGLSLAGNKDRSR--MSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAI 95
Query: 295 FK 296
K
Sbjct: 96 IK 97
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 35 LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVIC 89
IS + P GA RDGR VG L++VN + L GLT EA + L + + +++C
Sbjct: 47 FISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVC 101
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNL------GIFVKTIFQSGQAAENEKLREGDEIIA 277
+ QK PG++ LG SI GG GN GIF+ + +G A + +LR G ++
Sbjct: 13 LCIQKAPGER-LGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLE 71
Query: 278 INGVPLENKTHAEAIAMFKDI 298
+N L TH EA+ + + +
Sbjct: 72 VNQQSLLGLTHGEAVQLLRSV 92
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
+ TVT +K Q +G SIV + + + LGI+VK++ + G A + +L GD++++++G
Sbjct: 12 IITVTLKK---QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 281 ---VPLENKTHAE 290
V L + AE
Sbjct: 69 RSLVGLSQERAAE 81
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 3 KQFKVFRVVKDDSNELGIYIERQDGGAH--FSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
K+ ++ V N +G+ I G Y+ S ++ GGA DGR GD+L+ V
Sbjct: 8 KEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVK-GGAADVDGRLAAGDQLLSV 66
Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVICRN 91
+ + L GL+ + A E + S V + + +
Sbjct: 67 DGRSLVGLSQERAAELMTRTSSVVTLEVAKQ 97
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 11 VKDDSNELGIYIERQDGGAHFS----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK 66
++ DS LGI I GA + + GGA HRDGR V D L++V+ L
Sbjct: 10 LEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLV 69
Query: 67 GLTIQEAREALNNKDSHVEIVICR 90
G+T A L N V +I R
Sbjct: 70 GVTQSFAASVLRNTKGRVRFMIGR 93
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 219 LSMFTVTFQKGPGQKSLGFSIVG---GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEI 275
+ +F V +K + LG SI+G G D LGIFVKT+ + G A + +++ D +
Sbjct: 3 MELFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 60
Query: 276 IAINGVPLENKTHAEAIAMFKD 297
+ ++G L T + A ++ ++
Sbjct: 61 VEVDGTSLVGVTQSFAASVLRN 82
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
+TVT QK ++ G ++ GGRD+P G I + + G A + L+E D ++ +
Sbjct: 16 YTVTLQK-DSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVVMV 72
Query: 279 NGVPLENKTHAEAIAMFK 296
NG P+E+ H+ A+ +
Sbjct: 73 NGTPMEDVLHSFAVQQLR 90
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
+ +V +K P + LGFS+ GG + LGIFV + + G +AE L GD+I +NG
Sbjct: 11 IHSVRVEKSPAGR-LGFSVRGGSEH---GLGIFVSKV-EEGSSAERAGLCVGDKITEVNG 65
Query: 281 VPLENKTHAEAIAMFKDIFPQSSKL 305
+ LE+ T A+ + SS+L
Sbjct: 66 LSLESTTMGSAV----KVLTSSSRL 86
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 44.7 bits (104), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
++K+D LGI I G H P LIS I PG R G HVGD ++ VN L+
Sbjct: 8 LLKEDHEGLGISI--TGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 65
Query: 70 IQEAREALNNKDSHVE 85
+EA L+ + +E
Sbjct: 66 HKEAVTILSQQRGEIE 81
Score = 35.8 bits (81), Expect = 0.032, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 232 QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
+ LG SI GG++ + I + I A L GD I+A+NGV L + H EA
Sbjct: 13 HEGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEA 69
Query: 292 IAMF 295
+ +
Sbjct: 70 VTIL 73
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
SM V F+KG S+G + GG D +GIFV + + AA+ E L EGD+I+ +N
Sbjct: 2 SMKLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAK-EGLEEGDQILRVN 52
Query: 280 GVPLENKTHAEAIAMFKDI 298
V N EA+ D+
Sbjct: 53 NVDFTNIIREEAVLFLLDL 71
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
+ LGF+I+GG++ N I++ + G A + L+ GD+++++NGV +E + H +A+
Sbjct: 16 EGLGFNIMGGKEQ---NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAV 72
Query: 293 AMFK 296
+ K
Sbjct: 73 ELLK 76
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRN 91
SP IS + PGG R G GD+L+ VN ++G ++A E L V++V+
Sbjct: 30 SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSG 89
Query: 92 PDDA 95
P
Sbjct: 90 PSSG 93
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 12 KDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQ 71
K S ELGI I P +IS I+ G HR G +GD+L+ +++ RL +++
Sbjct: 115 KKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSME 174
Query: 72 EAREALNNKDSHVEIVICRNPD 93
+A + L + V++ I ++ D
Sbjct: 175 DAVQILQQCEDLVKLKIRKDED 196
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 269 LREGDEIIAINGVPLENKTHAEAIAMFKD 297
L+ GD ++AING+P E+ T EA + +D
Sbjct: 55 LQIGDRVMAINGIPTEDSTFEEANQLLRD 83
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN 79
SP LIS+IE R G +GD ++ +N + T +EA + L +
Sbjct: 36 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRD 83
>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1
Length = 97
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPK---GNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
TVT + PG G +I GGRD+P G I + + + G A +L+E D + +N
Sbjct: 10 TVTLHRAPG-FGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMVN 66
Query: 280 GVPLENKTHAEAIAMFK 296
GV ++N HA A+ +
Sbjct: 67 GVSMDNVEHAFAVQQLR 83
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 44.3 bits (103), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
LG SIVG + + +G+ GI++ +I + G A + ++ GD ++ +N + EN ++ +A+ +
Sbjct: 13 LGISIVG-QSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 71
Query: 295 FKDI 298
+DI
Sbjct: 72 LRDI 75
Score = 37.4 bits (85), Expect = 0.010, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 16 NELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
N LGI I ER DGG + I I GGA+ DGR GD L++VND + +
Sbjct: 11 NFLGISIVGQSNERGDGGIY-----IGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSN 65
Query: 71 QEAREALNN 79
+A L +
Sbjct: 66 DDAVRVLRD 74
>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And
Claudins Upon Binding To The 1st Pdz Domain Of Zonula
Occludens 1
Length = 100
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
TVT + PG G +I GGRD+P G I + + + G A +L+E D + +N
Sbjct: 13 TVTLHRAPG-FGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMVN 69
Query: 280 GVPLENKTHAEAIAMFK 296
GV ++N HA A+ +
Sbjct: 70 GVSMDNVEHAFAVQQLR 86
>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived
Ligand (Wrrttwv)
Length = 107
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
TVT + PG G +I GGRD+P G I + + + G A +L+E D + +N
Sbjct: 10 TVTLHRAPG-FGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMVN 66
Query: 280 GVPLENKTHAEAIAMFK 296
GV ++N HA A+ +
Sbjct: 67 GVSMDNVEHAFAVQQLR 83
>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived
Ligand (wrrttyl)
Length = 107
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
TVT + PG G +I GGRD+P G I + + + G A +L+E D + +N
Sbjct: 10 TVTLHRAPG-FGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMVN 66
Query: 280 GVPLENKTHAEAIAMFK 296
GV ++N HA A+ +
Sbjct: 67 GVSMDNVEHAFAVQQLR 83
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
SM V F+KG S+G + GG D +GIFV + + AA+ E L EGD+I+ +N
Sbjct: 29 SMKLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAK-EGLEEGDQILRVN 79
Query: 280 GVPLENKTHAEAIAMFKDI 298
V N EA+ D+
Sbjct: 80 NVDFTNIIREEAVLFLLDL 98
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
GF+I+GG D P L VK++ G AA++ K+ GD I+ IN V + THA+ + +
Sbjct: 32 FGFTIIGG-DEPDEFLQ--VKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKL 88
Query: 295 FKDI 298
F+ +
Sbjct: 89 FQSV 92
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 232 QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
+ SL ++ GG DSP G + V +++ G A + + +GDEI+AING + + T AEA
Sbjct: 27 EGSLDLALEGGVDSPVGK--VVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEA 84
Query: 292 IAMFKDIFPQSS 303
A + + Q
Sbjct: 85 EAALQKAWNQGG 96
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPY---LISHIEPGGAIHRDGRFHVGDELIK 59
K ++ R+ K+ S +L + +GG SP ++S + GGA R G GDE++
Sbjct: 17 KDVRLLRIKKEGSLDLAL-----EGGVD-SPVGKVVVSAVYEGGAAERHGGVVKGDEIMA 70
Query: 60 VNDKRLKGLTIQEAREAL----NNKDSHVEIVICRNP 92
+N K + T+ EA AL N +++V+ P
Sbjct: 71 INGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCP 107
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 231 GQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
G LGFSI GG D+P + GIF+ I G AA + +L D ++ +N V + H
Sbjct: 13 GNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVH 72
Query: 289 AEAIAMFKDIFP 300
+ A+ K+ P
Sbjct: 73 SRAVEALKEAGP 84
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 20 IYIERQDGGAHFS-------PYL-------ISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
I +ER + G FS P++ I+ I PGGA DGR V D +++VN+ +
Sbjct: 8 IVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDV 67
Query: 66 KGLTIQEAREAL 77
+ A EAL
Sbjct: 68 SEVVHSRAVEAL 79
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
G LGF+IVGG D GIF+ I G A + +LR+GD II++N V L
Sbjct: 16 GSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDRIISVNSVDL 64
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
LG SIVG + + +G+ GI++ +I + G A + ++ GD ++ +N + EN ++ +A+ +
Sbjct: 15 LGISIVG-QSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 73
Query: 295 FKDI 298
+DI
Sbjct: 74 LRDI 77
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 16 NELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
N LGI I ER DGG + I I GGA+ DGR GD L++VND + +
Sbjct: 13 NFLGISIVGQSNERGDGGIY-----IGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSN 67
Query: 71 QEAREAL 77
+A L
Sbjct: 68 DDAVRVL 74
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
++ TVT +K LGFS+ GG+ S G+ + + IF+ + ++E ++ GDEI+ +
Sbjct: 29 TVCTVTLEKM--SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLG 86
Query: 280 GVPLENKTHAEAIAMFKDI 298
G ++ T EA + K +
Sbjct: 87 GTAMQGLTRFEAWNIIKAL 105
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 15 SNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
S LG +E G H P I+ I G A + GDE++++ ++GLT EA
Sbjct: 39 SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEA 98
Query: 74 REALNN-KDSHVEIVICRNPDDAKSAT 99
+ D V IVI R +K T
Sbjct: 99 WNIIKALPDGPVTIVIRRKSLQSKETT 125
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
SM V F+KG S+G + GG D +GIFV + + AA+ E L EGD+I+ +N
Sbjct: 4 SMKLVKFRKG---DSVGLRLAGGND-----VGIFVAGVLEDSPAAK-EGLEEGDQILRVN 54
Query: 280 GVPLENKTHAEAIAMFKDI 298
V N EA+ D+
Sbjct: 55 NVDFTNIIREEAVLFLLDL 73
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
+FTV ++GP LG ++ G + G G++++T+ AA + +L GD I+ +NG
Sbjct: 9 VFTVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNG 66
Query: 281 VPLENKTHAEAIAMFK 296
L + A+ + +
Sbjct: 67 SSLLGLGYLRAVDLIR 82
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 36 ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRN 91
I + PG DGR +GD +++VN L GL A + + + + ++ ++
Sbjct: 40 IQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKS 95
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
Length = 98
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
LG SIVG + + +G+ GI++ +I + G A + ++ GD ++ +N + EN ++ +A+ +
Sbjct: 15 LGISIVG-QSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRV 73
Query: 295 FKDI 298
+DI
Sbjct: 74 LRDI 77
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 10/52 (19%)
Query: 16 NELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVND 62
N LGI I ER DGG + I I GGA+ DGR GD L++VND
Sbjct: 13 NFLGISIVGQSNERGDGGIY-----IGSIXKGGAVAADGRIEPGDXLLQVND 59
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
LG SIVG + + +G+ GI++ +I + G A + ++ GD ++ +N + EN ++ +A+ +
Sbjct: 19 LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 295 FKDI 298
+DI
Sbjct: 78 LRDI 81
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 16 NELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
N LGI I ER DGG + I I GGA+ DGR GD L++VND + ++
Sbjct: 17 NFLGISIVGQSNERGDGGIY-----IGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSN 71
Query: 71 QEAREAL 77
+A L
Sbjct: 72 DDAVRVL 78
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
LG SIVG + + +G+ GI++ +I + G A + ++ GD ++ +N + EN ++ +A+ +
Sbjct: 19 LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 295 FKDI 298
+DI
Sbjct: 78 LRDI 81
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 16 NELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
N LGI I ER DGG + I I GGA+ DGR GD L++VND + ++
Sbjct: 17 NFLGISIVGQSNERGDGGIY-----IGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSN 71
Query: 71 QEAREAL 77
+A L
Sbjct: 72 DDAVRVL 78
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
LG SIVG + + +G+ GI++ +I + G A + ++ GD ++ +N + EN ++ +A+ +
Sbjct: 19 LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 295 FKDI 298
+DI
Sbjct: 78 LRDI 81
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 16 NELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
N LGI I ER DGG + I I GGA+ DGR GD L++VND + ++
Sbjct: 17 NFLGISIVGQSNERGDGGIY-----IGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSN 71
Query: 71 QEAREAL 77
+A L
Sbjct: 72 DDAVRVL 78
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim Domain
2
Length = 94
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 231 GQKSLGFSIVGGRD--SPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
G GF I GGRD +P I V + + G+A E LR GD I+AING EN H
Sbjct: 14 GPAPWGFRISGGRDFHTP-----IIVTKVTERGKA-EAADLRPGDIIVAINGQSAENMLH 67
Query: 289 AEA 291
AEA
Sbjct: 68 AEA 70
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
G LGF+IVGG D GIF+ I G A + +LR+GD II++N V L
Sbjct: 13 GSTGLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDRIISVNSVDL 61
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
LG SIVG + + +G+ GI++ +I + G A + ++ GD ++ +N + EN ++ +A+ +
Sbjct: 19 LGISIVG-QSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 295 FKDI 298
+DI
Sbjct: 78 LRDI 81
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 16 NELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
N LGI I ER DGG + I I GGA+ DGR GD L++VND + ++
Sbjct: 17 NFLGISIVGQSNERGDGGIY-----IGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSN 71
Query: 71 QEAREAL 77
+A L
Sbjct: 72 DDAVRVL 78
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVG---GRDSPKGNLGIFVKTIFQSGQAAENEKLREG 272
S L +F V +K + LG SI+G G D+ LGIFVKT+ + G A + +++
Sbjct: 5 SSGLELFPVELEKD--EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVN 62
Query: 273 DEIIAINGVPLENKTHAEAIAMFKD 297
D+I+ ++G+ L T A + ++
Sbjct: 63 DQIVEVDGISLVGVTQNFAATVLRN 87
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 11 VKDDSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK 66
++ D + LGI I D G + + GGA RDGR V D++++V+ L
Sbjct: 15 LEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLV 74
Query: 67 GLTIQEAREALNNKDSHVEIVICR 90
G+T A L N +V VI R
Sbjct: 75 GVTQNFAATVLRNTKGNVRFVIGR 98
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSP--KGN-LGIFVKTIFQSGQAAENEKLREGDE 274
S+ T+T + G LG SI GG+ S KG+ GIF+ + + G AA +R GD+
Sbjct: 1 SMEELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAAR-AGVRVGDK 57
Query: 275 IIAINGVPLENKTHAEAIAMFK 296
++ +NGV L+ H EA+ +
Sbjct: 58 LLEVNGVALQGAEHHEAVEALR 79
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 17 ELGIYIERQDGGAHFS--------PY-------LISHIEPGGAIHRDGRFHVGDELIKVN 61
EL + I RQ GG S PY IS + G R G VGD+L++VN
Sbjct: 4 ELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVN 62
Query: 62 DKRLKGLTIQEAREALNNKDSHVEIVICR 90
L+G EA EAL + V++ + R
Sbjct: 63 GVALQGAEHHEAVEALRGAGTAVQMRVWR 91
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 206 NSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP--KGN-LGIFVKTIFQSGQ 262
S+ + P + T+T + G LG SI GG+ S KG+ GIF+ + + G
Sbjct: 1 GSSGSSGEPARIEEEELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGP 58
Query: 263 AAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
AA +R GD+++ +NGV L+ H EA+ +
Sbjct: 59 AA-RAGVRVGDKLLEVNGVALQGAEHHEAVEALR 91
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 14 DSNELGIYIERQDGGAHFS--------PY-------LISHIEPGGAIHRDGRFHVGDELI 58
+ EL + I RQ GG S PY IS + G R G VGD+L+
Sbjct: 13 EEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLL 71
Query: 59 KVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
+VN L+G EA EAL + V++ + R
Sbjct: 72 EVNGVALQGAEHHEAVEALRGAGTAVQMRVWR 103
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
+ TVT +K Q +G SIV + + + LGI+VK++ + G A + +L GD++++++G
Sbjct: 6 IITVTLKK---QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 281 VPL 283
L
Sbjct: 63 RSL 65
Score = 35.4 bits (80), Expect = 0.036, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 3 KQFKVFRVVKDDSNELGIYIERQDGGAH--FSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
K+ ++ V N +G+ I G Y+ S ++ GGA DGR GD+L+ V
Sbjct: 2 KEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVK-GGAADVDGRLAAGDQLLSV 60
Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVICR 90
+ + L GL+ + A E + S V + + +
Sbjct: 61 DGRSLVGLSQERAAELMTRTSSVVTLEVAK 90
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
+ TVT +K Q +G SIV + + + LGI+VK++ + G A + +L GD++++++G
Sbjct: 12 IITVTLKK---QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 281 VPL 283
L
Sbjct: 69 RSL 71
Score = 36.2 bits (82), Expect = 0.022, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 1 MEKQFKVFRVVKDDSNELGIYIERQDGGAH--FSPYLISHIEPGGAIHRDGRFHVGDELI 58
+ K+ ++ V N +G+ I G Y+ S ++ GGA DGR GD+L+
Sbjct: 6 LRKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVK-GGAADVDGRLAAGDQLL 64
Query: 59 KVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
V+ + L GL+ + A E + S V + + +
Sbjct: 65 SVDGRSLVGLSQERAAELMTRTSSVVTLEVAK 96
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
+ TVT +K Q +G SIV + + + LGI+VK++ + G A + +L GD++++++G
Sbjct: 6 IITVTLKK---QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 281 VPL 283
L
Sbjct: 63 RSL 65
Score = 35.4 bits (80), Expect = 0.040, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 3 KQFKVFRVVKDDSNELGIYIERQDGGAH--FSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
K+ ++ V N +G+ I G Y+ S ++ GGA DGR GD+L+ V
Sbjct: 2 KEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVK-GGAADVDGRLAAGDQLLSV 60
Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVICR 90
+ + L GL+ + A E + S V + + +
Sbjct: 61 DGRSLVGLSQERAAELMTRTSSVVTLEVAK 90
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
LG SI GGR++ + I + IF A ++ LR GD I+++NG L TH +A+
Sbjct: 17 LGISIKGGREN---RMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQA 73
Query: 295 FK 296
K
Sbjct: 74 LK 75
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 8 FRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
RVVK ++ LGI I + G + P LIS I PG A + +GD ++ VN L+
Sbjct: 7 VRVVKQEAGGLGISI--KGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQ 64
Query: 68 LTIQEAREALNNKDSHV 84
T +A +AL V
Sbjct: 65 ATHDQAVQALKRAGKEV 81
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
++K+D LGI I G H P LIS I PG R G HVGD ++ VN L+
Sbjct: 15 LLKEDHEGLGISI--TGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 72
Query: 70 IQEAREALNNKDSHVE 85
+EA L+ + +E
Sbjct: 73 HKEAVTILSQQRGEIE 88
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 232 QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
+ LG SI GG++ + I + I A L GD I+A+NGV L + H EA
Sbjct: 20 HEGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEA 76
Query: 292 IAMF 295
+ +
Sbjct: 77 VTIL 80
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
LG SI GGR++ + I + IF+ A + E L GD I+++NG L + TH EA+
Sbjct: 14 LGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA 70
Query: 295 FK 296
K
Sbjct: 71 LK 72
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
V K D+ LGI I + G + P LIS I G A + VGD ++ VN + L T
Sbjct: 6 VRKADAGGLGISI--KGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT 63
Query: 70 IQEAREALNNKDSHV 84
EA +AL V
Sbjct: 64 HDEAVQALKKTGKEV 78
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
LG SI GGR++ + I + IF+ A + E L GD I+++NG L + TH EA+
Sbjct: 14 LGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA 70
Query: 295 FK 296
K
Sbjct: 71 LK 72
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
V K D+ LGI I + G + P LIS I G A + VGD ++ VN + L T
Sbjct: 6 VRKADAGGLGISI--KGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT 63
Query: 70 IQEAREALNNKDSHV 84
EA +AL V
Sbjct: 64 HDEAVQALKKTGKEV 78
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
LG SI GGR++ + I + IF+ A + E L GD I+++NG L + TH EA+
Sbjct: 18 LGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA 74
Query: 295 FK 296
K
Sbjct: 75 LK 76
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
V K D+ LGI I + G + P LIS I G A + VGD ++ VN + L T
Sbjct: 10 VRKADAGGLGISI--KGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT 67
Query: 70 IQEAREALNNKDSHVEIVI 88
EA +AL K + E+V+
Sbjct: 68 HDEAVQAL--KKTGKEVVL 84
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
V + Q LG ++ R + ++GI++ I + AA++ ++REGD II ING+ +
Sbjct: 23 VDLYRMNSQDKLGLTVCY-RTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEV 81
Query: 284 ENKTHAEAI 292
+N+ A A+
Sbjct: 82 QNREEAVAL 90
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 19/65 (29%)
Query: 13 DDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQE 72
DD +++GIYI S I+P +DGR GD +I++N G+ +Q
Sbjct: 43 DDEDDIGIYI--------------SEIDPNSIAAKDGRIREGDRIIQIN-----GIEVQN 83
Query: 73 AREAL 77
EA+
Sbjct: 84 REEAV 88
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
+ GF++VGG D P L I K++ G AA + K+ GD I+++N + THA+ +
Sbjct: 11 RGFGFTVVGG-DEPDEFLQI--KSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVV 67
Query: 293 AMFKDI 298
+F+ I
Sbjct: 68 KIFQSI 73
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
+ GF++VGG D P L I K++ G AA + K+ GD I+++N + THA+ +
Sbjct: 29 RGFGFTVVGG-DEPDEFLQI--KSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVV 85
Query: 293 AMFKDI 298
+F+ I
Sbjct: 86 KIFQSI 91
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 18 LGIYIERQDGGAHFSP--YLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEARE 75
LGI I G P + I A+ DGR +GD++I V+ L+G T Q+A E
Sbjct: 17 LGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVE 76
Query: 76 ALNNKDSHVEIVICR 90
L + V + + R
Sbjct: 77 VLRHTGQTVLLTLMR 91
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 31/46 (67%)
Query: 251 GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
GIFVK+I +S + +++ GD+IIA++G L+ T+ +A+ + +
Sbjct: 34 GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLR 79
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 219 LSMFTVTFQKGPGQKSLGFSIVG---GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEI 275
+ +F V +K + LG SI+G G D+ LGIFVKT+ + G A + +++ D+I
Sbjct: 3 MELFPVELEKD--EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQI 60
Query: 276 IAINGVPLENKTHAEAIAMFKD 297
+ ++G+ L T A + ++
Sbjct: 61 VEVDGISLVGVTQNFAATVLRN 82
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 14 DSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
D + LGI I D G + + GGA RDGR V D++++V+ L G+T
Sbjct: 13 DEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVT 72
Query: 70 IQEAREALNNKDSHVEIVICR 90
A L N +V VI R
Sbjct: 73 QNFAATVLRNTKGNVRFVIGR 93
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 41.2 bits (95), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G++ GF + G KG G F++ + + G AE LR GD ++ +NGV +E +TH +
Sbjct: 10 GEQGYGFHLHG----EKGRRGQFIRRV-EPGSPAEAAALRAGDRLVEVNGVNVEGETHHQ 64
Query: 291 AIAMFKDIFPQSSKL 305
+ K + Q+ L
Sbjct: 65 VVQRIKAVEGQTRLL 79
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 5 FKVFRVVKDDSNELGIY--IERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVND 62
F+V V K+ L I I R +G + I + PGG ++DGR GD+L+ +N
Sbjct: 16 FRVITVTKETGLGLKILGGINRNEGPLVY----IHEVIPGGDCYKDGRLKPGDQLVSINK 71
Query: 63 KRLKGLTIQEAREALN----NKDSHVEIVICRN 91
+ + G++ +EA+ + +S EI R+
Sbjct: 72 ESMIGVSFEEAKSIITRAKLRSESPWEIAFIRS 104
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
+ + TVT + G LG I+GG + +G L +++ + G ++ +L+ GD++++
Sbjct: 15 AFRVITVTKETG-----LGLKILGGINRNEGPL-VYIHEVIPGGDCYKDGRLKPGDQLVS 68
Query: 278 IN 279
IN
Sbjct: 69 IN 70
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 41.2 bits (95), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 31 FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
F P +IS + GG R G H+GD ++ +N LKG + EA L V + I +
Sbjct: 29 FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKI-K 87
Query: 91 NPDDAKSATN 100
DA+ A++
Sbjct: 88 KQTDAQPASS 97
Score = 27.7 bits (60), Expect = 7.7, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
++TV ++ G LG +I G + I + ++ + G A + GD I+AIN
Sbjct: 6 IYTVELKRYGG--PLGITISGTEEPFDP---IIISSLTKGGLAERTGAIHIGDRILAINS 60
Query: 281 VPLENKTHAEAIAMFK 296
L+ K +EAI + +
Sbjct: 61 SSLKGKPLSEAIHLLQ 76
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
++K+D LGI I G H P LIS I PG R G HVGD ++ VN L+
Sbjct: 33 LLKEDHEGLGISI--TGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 90
Query: 70 IQEAREALNNKDSHVE 85
+EA L+ + +E
Sbjct: 91 HKEAVTILSQQRGEIE 106
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 232 QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
+ LG SI GG++ + I + I A L GD I+A+NGV L + H EA
Sbjct: 38 HEGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEA 94
Query: 292 IAMF 295
+ +
Sbjct: 95 VTIL 98
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
+SLG +I GG + LGI++ T G AE L+ GD+I+ +NG N H EA+
Sbjct: 32 RSLGLTIRGGAEY---GLGIYI-TGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAV 87
Query: 293 AMFK 296
+ K
Sbjct: 88 RLLK 91
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
LG +VGG+ + G LG F+ + + A LR GDE++ NG PL T+ E
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEV 95
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 232 QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
+ GF I+GG D P I + + G A + +L GDE++ ++G+P+ KTH
Sbjct: 19 ESGFGFRILGG-DEP--GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYV 75
Query: 292 IAMF 295
I +
Sbjct: 76 IDLM 79
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 17 ELGIYIERQDGGAHF---------SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
EL +++ R + G F P LI + G+ RDGR H GDEL+ V+ + G
Sbjct: 10 ELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAG 69
Query: 68 LT 69
T
Sbjct: 70 KT 71
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGG--RDSPKG-NLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
VT K G+KS G IV G +DSP GIF+K I A +L+ GD I+++NG
Sbjct: 9 VTLDK-TGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG 67
Query: 281 VPLENKTHAEAIAMFKD 297
+ N T I + K+
Sbjct: 68 KDVRNSTEQAVIDLIKE 84
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 35 LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVI 88
I I P H GR VGD ++ +N K ++ T Q + + D +E+ I
Sbjct: 40 FIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI 93
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
LG +VGG+ + G LG F+ + + A LR GDE++ NG PL T+ E
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEE 94
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
+ LG S+ GG + G+F+ + + GQA ++ L+ GDEI+ ING + + TH E I
Sbjct: 96 EGLGLSVRGGLEF---GCGLFISHLIKGGQA-DSVGLQVGDEIVRINGYSISSCTHEEVI 151
Query: 293 AMFK 296
+ +
Sbjct: 152 NLIR 155
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 231 GQKSLGFSI---VGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
G LGFSI VGGR +P + GIFV + G A++ L+ GD+II NG N
Sbjct: 1 GSPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFIN 58
Query: 286 KTHAEAIAMFK 296
H +A+++ K
Sbjct: 59 IEHGQAVSLLK 69
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
+FK + K LG+ I G+ +I+++ GG + G+ ++GD+++ +N
Sbjct: 1 EFKDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 60
Query: 64 RLKGL---TIQEAREALNNKDSHVEIVICRNP 92
L GL T Q + L N+ S V++ I R P
Sbjct: 61 SLVGLPLSTCQSIIKGLKNQ-SRVKLNIVRCP 91
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 232 QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
+ GF I+GG + + I++ I G A + +LR GDE+I+++G P+ K+H
Sbjct: 12 ETGFGFRILGGNEPGEP---IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLV 68
Query: 292 IAMFKDIFPQ 301
+ + + Q
Sbjct: 69 VQLMQQAAKQ 78
Score = 37.7 bits (86), Expect = 0.008, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 15 SNELGIYIERQDGGAHF---------SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
S E I++ R++ G F P I HI P GA DGR GDELI V+ +
Sbjct: 1 SMEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60
Query: 66 KG----LTIQEAREALNNKDSHVEIVI 88
G L +Q ++A K HV + +
Sbjct: 61 IGKSHQLVVQLMQQAA--KQGHVNLTV 85
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G GF I GGRD + I V + + G+A + + LR GD I+AING E HAE
Sbjct: 10 GPAPWGFRITGGRDF---HTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAE 65
Query: 291 A 291
A
Sbjct: 66 A 66
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
F+V +G G ++ GGRD G+ + V+ + + G A +L GD ++ ING
Sbjct: 13 FSVELVRG--YAGFGLTLGGGRDV-AGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGE 69
Query: 282 PLENKTHAEAIAMFKDIFPQ 301
+ THA+A+ + PQ
Sbjct: 70 STQGLTHAQAVERIRAGGPQ 89
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
+P + + G R GR VGD ++ +N + +GLT +A E + + +VI R
Sbjct: 38 TPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRR 96
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G GF I GGRD + I V + + G+A + + LR GD I+AING E HAE
Sbjct: 9 GPAPWGFRITGGRDF---HTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAE 64
Query: 291 A 291
A
Sbjct: 65 A 65
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
+FK + K LG+ I G+ +I+++ GG + G+ ++GD+++ +N
Sbjct: 1 EFKDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGT 60
Query: 64 RLKGL---TIQEAREALNNKDSHVEIVICR 90
L GL T Q + L N+ S V++ I R
Sbjct: 61 SLVGLPLSTCQSIIKGLKNQ-SRVKLNIVR 89
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 235 LGFSI---VGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHA 289
LGFSI VGGR +P + GIFV + G A++ L+ GD+II NG N H
Sbjct: 4 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHG 61
Query: 290 EAIAMFK 296
+A+++ K
Sbjct: 62 QAVSLLK 68
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid
Beta A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 18 LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL---TIQEAR 74
LG+ I G+ +I+++ GG + G+ ++GD+++ +N L GL T Q
Sbjct: 19 LGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSII 78
Query: 75 EALNNKDSHVEIVICRNPDDA 95
+ L N+ S V++ I P
Sbjct: 79 KGLKNQ-SRVKLNIVSGPSSG 98
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 23 ERQDGGAHF--------SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
+R+ GG F P +IS + GGA + G GD ++ VND+ L L+ A
Sbjct: 11 KRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSAL 70
Query: 75 EALNNKDSHVEIV-ICRNPD 93
E L S +V I R P+
Sbjct: 71 EVLRGIASETHVVLILRGPE 90
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
+ + + + G A ++ ++ GD I+A+N PL + ++ A+ + + I
Sbjct: 30 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI 76
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated
Peptide
Length = 127
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 23 ERQDGGAHF--------SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
+R+ GG F P +IS + GGA + G GD ++ VND+ L L+ A
Sbjct: 16 KRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSAL 75
Query: 75 EALNNKDSHVEIV-ICRNPD 93
E L S +V I R P+
Sbjct: 76 EVLRGIASETHVVLILRGPE 95
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
+ + + + G A ++ ++ GD I+A+N PL + ++ A+ + + I
Sbjct: 35 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI 81
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 23 ERQDGGAHF--------SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
+R+ GG F P +IS + GGA + G GD ++ VND+ L L+ A
Sbjct: 9 KRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSAL 68
Query: 75 EALNNKDSHVEIV-ICRNPD 93
E L S +V I R P+
Sbjct: 69 EVLRGIASETHVVLILRGPE 88
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
+ + + + G A ++ ++ GD I+A+N PL + ++ A+ + + I
Sbjct: 28 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI 74
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
Length = 97
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 14 DSNELGIYIERQDGGAH-----FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
+ N G I GGAH P +I+ + PGG R+G GD L+ V+ RL G
Sbjct: 12 EGNTFGFVIR---GGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGT 68
Query: 69 TIQEAREALNNKDSHVEIVI 88
T EA L ++I
Sbjct: 69 THAEAMSILKQCGQEAALLI 88
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGG-RDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
SM TV + GF I GG D + + + ++ G A ++ GD ++++
Sbjct: 1 SMRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSV 60
Query: 279 NGVPLENKTHAEAIAMFKDIFPQSSKL 305
+G+ L THAEA+++ K +++ L
Sbjct: 61 DGIRLLGTTHAEAMSILKQCGQEAALL 87
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 235 LGFSI---VGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHA 289
LGFSI VGGR +P + GIFV + G A++ L+ GD+II NG N H
Sbjct: 15 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHG 72
Query: 290 EAIAMFK 296
+A+++ K
Sbjct: 73 QAVSLLK 79
>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom
Family Member 4
Length = 100
Score = 38.1 bits (87), Expect = 0.006, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G GF++ GG + + + V I G+AA ++K+R GDE++ ING PL + E
Sbjct: 19 GGAPWGFTLKGGLEHCEP---LTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQE 74
Query: 291 AIAMFKDIF 299
A+ + K F
Sbjct: 75 ALILIKGSF 83
Score = 30.8 bits (68), Expect = 0.90, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 27 GGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
G H P +S IE GG + GDEL+ +N L G + QEA
Sbjct: 30 GLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQEA 75
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 235 LGFSI---VGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHA 289
LGFSI VGGR +P + GIFV + G A++ L+ GD+II NG N H
Sbjct: 23 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHG 80
Query: 290 EAIAMFK 296
+A+++ K
Sbjct: 81 QAVSLLK 87
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 7 VFRVVK----DDSNELGIYIERQDGGAH-----FSPYLISHIEPGGAIHRDGRFHVGDEL 57
+FR V+ + N G I GGAH P +I+ + PGG R+G GD L
Sbjct: 104 MFRTVEVTLHKEGNTFGFVIR---GGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRL 160
Query: 58 IKVNDKRLKGLTIQEAREALNNKDSHVEIVI 88
+ V+ RL G T EA L ++I
Sbjct: 161 LSVDGIRLLGTTHAEAMSILKQCGQEATLLI 191
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 234 SLGFSIVGGRDS---PKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
+LG ++ GG D P+ V + Q G AA +++L GD I A+NG+ L H E
Sbjct: 20 TLGLTVSGGIDKDGKPR------VSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDE 73
Query: 291 AIAMFKDI 298
I++ K++
Sbjct: 74 IISLLKNV 81
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 234 SLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENE-KLREGDEIIAINGVPLENKTHAEAI 292
+ GF I GG + V T + G A+ E ++ GD +++++G+ L THAEA+
Sbjct: 118 TFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAM 177
Query: 293 AMFKDIFPQSSKL 305
++ K +++ L
Sbjct: 178 SILKQCGQEATLL 190
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 36 ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL 77
++ I GG IHR G HVGDE++++N + ++ + ++A+
Sbjct: 40 VARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAM 81
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 36 ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL 77
++ I GG IHR G HVGDE++++N + ++ + ++A+
Sbjct: 40 VARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAM 81
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 233 KSLGFSIVGGRD--SPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
K LGFSI+ +D P ++ I ++++ G A + L GD ++++N L+N + AE
Sbjct: 26 KGLGFSILDYQDPLDPTRSV-IVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAE 84
Query: 291 AIAMFKDIFP 300
A+ + K + P
Sbjct: 85 AVEILKAVPP 94
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 37.0 bits (84), Expect = 0.012, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
S+ + V K + LG +V D P G+F+ + + G AA++ +L D ++A
Sbjct: 1 SMEILQVALHKRDSGEQLGIKLVRRTDEP----GVFILDLLEGGLAAQDGRLSSNDRVLA 56
Query: 278 INGVPLENKT 287
ING L+ T
Sbjct: 57 INGHDLKYGT 66
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
VT QK Q +G SI GG G +++ +F + AA + + GDEI +NG +
Sbjct: 9 VTLQK-DAQNLIGISIGGGAQYCPG---LYIVQVFDNTPAALDGTVAAGDEITGVNGRSI 64
Query: 284 ENKTHAEAIAMFKDI 298
+ KT E M +++
Sbjct: 65 KGKTKVEVAKMIQEV 79
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 12 KDDSNELGIYIERQDGGAHFSPYL-ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
KD N +GI I GGA + P L I + DG GDE+ VN + +KG T
Sbjct: 13 KDAQNLIGISI---GGGAQYCPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTK 69
Query: 71 QEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNL 111
E + + V I + + LQ +PK L
Sbjct: 70 VEVAKMIQEVKGEVTI-------------HYNKLQADPKQL 97
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 37.0 bits (84), Expect = 0.014, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 226 FQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
+KGP GF + G KG LG +++ + + G AE L GD ++ +NG +E
Sbjct: 9 LEKGP--NGYGFHLHG----EKGKLGQYIRLV-EPGSPAEKAGLLAGDRLVEVNGENVEK 61
Query: 286 KTHAEAIAMFK 296
+TH + ++ +
Sbjct: 62 ETHQQVVSRIR 72
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 36.6 bits (83), Expect = 0.016, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 226 FQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
+KGP GF + G KG LG +++ + + G AE L GD ++ +NG +E
Sbjct: 8 LEKGP--NGYGFHLHG----EKGKLGQYIRLV-EPGSPAEKAGLLAGDRLVEVNGENVEK 60
Query: 286 KTHAEAIAMFK 296
+TH + ++ +
Sbjct: 61 ETHQQVVSRIR 71
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 36.6 bits (83), Expect = 0.017, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 226 FQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
+KGP GF + G KG LG +++ + + G AE L GD ++ +NG +E
Sbjct: 9 LEKGP--NGYGFHLHG----EKGKLGQYIRLV-EPGSPAEKAGLLAGDRLVEVNGENVEK 61
Query: 286 KTHAEAIAMFK 296
+TH + ++ +
Sbjct: 62 ETHQQVVSRIR 72
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 35 LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL 77
+++ I GG IHR G HVGDE+ ++N + T+++ ++ L
Sbjct: 28 IVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKML 70
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 232 QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
Q GF++ G R + V+++ + G AA ++EGD II +NG + N +H E
Sbjct: 18 QHGFGFTVSGDRI-------VLVQSV-RPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEV 69
Query: 292 IAMFK 296
+ + K
Sbjct: 70 VKLIK 74
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 226 FQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
+KGP GF + G KG LG +++ + + G AE L GD ++ +NG +E
Sbjct: 9 LEKGP--NGYGFHLHG----EKGKLGQYIRLV-EPGSPAEKAGLLAGDRLVEVNGENVEK 61
Query: 286 KTHAEAIAMFK 296
+TH + ++ +
Sbjct: 62 ETHQQVVSRIR 72
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
LG +VGG+ + G L F+ + + A LR GDE++ NG L+ T E +
Sbjct: 50 LGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNI 109
Query: 295 FKDIFPQ 301
+ P+
Sbjct: 110 ILESKPE 116
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 35 LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL--NNKDSHVEIVICRN 91
I+ ++ G G GDE+++ N + L+G T +E + + + VE+V+ R+
Sbjct: 68 FITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS 126
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
T +KGP GF++ + P G F++++ AE LR D I+ +NGV +
Sbjct: 13 CTMKKGPS--GYGFNLHSDKSKP----GQFIRSV-DPDSPAEASGLRAQDRIVEVNGVCM 65
Query: 284 ENKTHAEAIAMFK 296
E K H + ++ +
Sbjct: 66 EGKQHGDVVSAIR 78
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 36.2 bits (82), Expect = 0.023, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
++VT GPG GF + GG+D N+ + + I +AA+++ L +GD ++AI+GV
Sbjct: 3 YSVTLT-GPG--PWGFRLQGGKDF---NMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGV 55
Query: 282 PLENKTHAEA 291
+ TH EA
Sbjct: 56 NTDTMTHLEA 65
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 35.8 bits (81), Expect = 0.033, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 229 GPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
GPG GF + GG+D N+ + + I +AA+++ L +GD ++AI+GV + TH
Sbjct: 16 GPG--PWGFRLQGGKDF---NMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTH 69
Query: 289 AEA 291
EA
Sbjct: 70 LEA 72
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
T +KGP GF++ + P G F++++ AE LR D I+ +NGV +
Sbjct: 8 CTMKKGP--SGYGFNLHSDKSKP----GQFIRSV-DPDSPAEASGLRAQDRIVEVNGVCM 60
Query: 284 ENKTHAEAIAMFK 296
E K H + ++ +
Sbjct: 61 EGKQHGDVVSAIR 73
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G + LG SI G P GIF+ + + G + L GD+I+ +NGV N H E
Sbjct: 25 GSRGLGCSISSG---PIQKPGIFISHV-KPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKE 80
Query: 291 AIAMFK 296
A+ + K
Sbjct: 81 AVNVLK 86
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
T +KGP GF++ + P G F++++ AE LR D I+ +NGV +
Sbjct: 13 CTMKKGP--SGYGFNLHSDKSKP----GQFIRSV-DPDSPAEASGLRAQDRIVEVNGVCM 65
Query: 284 ENKTHAEAIAMFK 296
E K H + ++ +
Sbjct: 66 EGKQHGDVVSAIR 78
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDEL-----IK 59
K+ R+VK+ LG I++ + +++ I GGA R G HVGDEL I
Sbjct: 5 VKIIRLVKN-REPLGATIKKDE---QTGAIIVARIXRGGAADRSGLIHVGDELREVNGIP 60
Query: 60 VNDKR 64
V DKR
Sbjct: 61 VEDKR 65
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF 295
I V I + G A + + GDE+ +NG+P+E+K E I +
Sbjct: 30 IIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQIL 73
>pdb|2EAQ|A Chain A, Crystal Structure Of Pdz Domain Of Kiaa0858 (Lim), Ms0793
From Homo Sapiens
Length = 90
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
++ + PG KSL F D P GIFV ++ ++G AE +L+ DEIIAIN
Sbjct: 7 ISINQTPG-KSLDFGFTIKWDIP----GIFVASV-EAGSPAEFSQLQVDDEIIAINNTKF 60
Query: 284 ---ENKTHAEAIA 293
++K EA+A
Sbjct: 61 SYNDSKEWEEAMA 73
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
T +KGP GF++ + P G F++++ AE LR D I+ +NGV +
Sbjct: 13 CTMKKGP--SGYGFNLHSDKSKP----GQFIRSV-DPDSPAEASGLRAQDRIVEVNGVCM 65
Query: 284 ENKTHAEAIAMFK 296
E K H + ++ +
Sbjct: 66 EGKQHGDVVSAIR 78
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G + LG SI G P GIF+ + + G + L GD+I+ +NGV N H E
Sbjct: 11 GSRGLGCSISSG---PIQKPGIFISHV-KPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKE 66
Query: 291 AIAMFK 296
A+ + K
Sbjct: 67 AVNVLK 72
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 224 VTFQKGPGQKSLGFSIVGG-RDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
VT QK Q +G SI GG + P +++ +F + AA + + GDEI +NG
Sbjct: 28 VTLQK-DAQNLIGISIGGGAQYCPC----LYIVQVFDNTPAALDGTVAAGDEITGVNGRS 82
Query: 283 LENKTHAEAIAMFKDI 298
++ KT E M +++
Sbjct: 83 IKGKTKVEVAKMIQEV 98
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 12 KDDSNELGIYIERQDGGAHFSPYL-ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
KD N +GI I GGA + P L I + DG GDE+ VN + +KG T
Sbjct: 32 KDAQNLIGISI---GGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTK 88
Query: 71 QEAREALNNKDSHVEI 86
E + + V I
Sbjct: 89 VEVAKMIQEVKGEVTI 104
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 34.7 bits (78), Expect = 0.062, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
VT QK Q +G SI GG +++ +F + AA + + GDEI +NG +
Sbjct: 6 VTLQKD-AQNLIGISIGGGAQYCPC---LYIVQVFDNTPAALDGTVAAGDEITGVNGRSI 61
Query: 284 ENKTHAEAIAMFKDI 298
+ KT E M +++
Sbjct: 62 KGKTKVEVAKMIQEV 76
Score = 32.0 bits (71), Expect = 0.43, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 12 KDDSNELGIYIERQDGGAHFSPYL-ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
KD N +GI I GGA + P L I + DG GDE+ VN + +KG T
Sbjct: 10 KDAQNLIGISI---GGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTK 66
Query: 71 QEAREALNNKDSHVEI 86
E + + V I
Sbjct: 67 VEVAKMIQEVKGEVTI 82
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 233 KSLGFSIVGGRDSPKGNLGIFVK----TIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
+ GF I+ + P+ I V I A KL+ GD I+A+NG + N H
Sbjct: 22 EGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPH 81
Query: 289 AEAIAMFKD 297
A+ + + KD
Sbjct: 82 ADIVKLIKD 90
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 235 LGFSIVGGRDSP---------KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
LGFSI GG D K + GI+V + + G AE L+ GD+I+ +NG +
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGG-PAEIAGLQIGDKIMQVNGWDMTM 87
Query: 286 KTHAEA 291
TH +A
Sbjct: 88 VTHDQA 93
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2
Associated Lim Protein
Length = 103
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 230 PGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHA 289
PG GF + GG D + V T G A L GD I+AI+G E+ THA
Sbjct: 12 PGPAPWGFRLSGGIDFNQ----PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHA 67
Query: 290 EA 291
+A
Sbjct: 68 DA 69
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 235 LGFSIVGGRDSP---------KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
LGFSI GG D K + GI+V + + G AE L+ GD+I+ +NG +
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGG-PAEIAGLQIGDKIMQVNGWDMTM 87
Query: 286 KTHAEA 291
TH +A
Sbjct: 88 VTHDQA 93
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 235 LGFSIVGGRDSP---------KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
LGFSI GG D K + GI+V + + G AE L+ GD+I+ +NG +
Sbjct: 40 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGG-PAEIAGLQIGDKIMQVNGWDMTM 98
Query: 286 KTHAEA 291
TH +A
Sbjct: 99 VTHDQA 104
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 219 LSMFTVTFQKGPGQKSLGFSIVGGRD-SPKGN-LGIFVKTIFQSGQAAENEKLREGDEII 276
S+++V + SLG SI G RD S G GI+VK++ AA + ++ D+I+
Sbjct: 11 FSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKIL 70
Query: 277 AINGVPLENKTHAEAIAMFKD 297
++ V ++ ++ + + ++
Sbjct: 71 RVDDVNVQGMAQSDVVEVLRN 91
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 6 KVFRVVKDDSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
++FR + D++ LGI I ++ G Y+ S I PG A DGR D++++V+
Sbjct: 17 ELFR--EKDTSSLGISISGMRDQSTTGEATGIYVKSLI-PGSAAALDGRIEPNDKILRVD 73
Query: 62 DKRLKGLTIQEAREALNN 79
D ++G+ + E L N
Sbjct: 74 DVNVQGMAQSDVVEVLRN 91
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
IFVK I Q AA + ++EGD ++ ING EN + +A + +
Sbjct: 25 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIE 69
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
IFVK I Q AA + ++EGD ++ ING EN + +A
Sbjct: 23 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDA 62
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 224 VTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
VT QK Q +G SI GG +++ +F + AA + + GDEI +NG +
Sbjct: 23 VTLQK-DAQNLIGISIGGGAQYCPC---LYIVQVFDNTPAALDGTVAAGDEITGVNGRSI 78
Query: 284 ENKTHAEAIAMFKDI 298
+ KT E M +++
Sbjct: 79 KGKTKVEVAKMIQEV 93
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 12 KDDSNELGIYIERQDGGAHFSPYL-ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
KD N +GI I GGA + P L I + DG GDE+ VN + +KG T
Sbjct: 27 KDAQNLIGISI---GGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTK 83
Query: 71 QEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNL 111
E + + V I + + LQ +PK L
Sbjct: 84 VEVAKMIQEVKGEVTI-------------HYNKLQADPKQL 111
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 35 LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVIC 89
+IS I GGA + G H GDE++++N ++G + E + L++ + V+
Sbjct: 51 IISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLI 105
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
+ + I + G A ++ L EGDE++ ING+ + K E + D+
Sbjct: 50 VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM 96
>pdb|3BPU|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Membrane
Associated Guanylate Kinase, C677s And C709s Double
Mutant
Length = 88
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
S+ + TV KGP GF+I DSP G G VK I S + L+EGD I+
Sbjct: 1 SMELITVHIVKGP--MGFGFTIA---DSPGGG-GQRVKQIVDS---PRSRGLKEGDLIVE 51
Query: 278 INGVPLENKTHAEAIAMFKDIFPQSSKLS 306
+N ++ TH + + M + P+ S+++
Sbjct: 52 VNKKNVQALTHNQVVDMLVE-SPKGSEVT 79
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 235 LGFSIVGGRDSP---------KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
LGFSI GG D K + GI+V + + G AE L+ GD+I+ +NG +
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGG-PAEIAGLQIGDKIMQVNGWDMTM 87
Query: 286 KTHAEA 291
TH +A
Sbjct: 88 VTHDQA 93
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 235 LGFSIVGGRDSP---------KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
LGFSI GG D K + GI+V + + G AE L+ GD+I+ +NG +
Sbjct: 30 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGG-PAEIAGLQIGDKIMQVNGWDMTM 88
Query: 286 KTHAEA 291
TH +A
Sbjct: 89 VTHDQA 94
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
IFVK I Q AA + ++EGD ++ ING EN + +A
Sbjct: 22 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDA 61
>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|B Chain B, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|C Chain C, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|D Chain D, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|E Chain E, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
Length = 88
Score = 34.3 bits (77), Expect = 0.097, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
S+S ++V+ G GF + GG+D N+ + + ++ G+AA+ +R GD +++
Sbjct: 1 SMSNYSVSLV---GPAPWGFRLQGGKDF---NMPLTISSLKDGGKAAQ-ANVRIGDVVLS 53
Query: 278 INGVPLENKTHAEA 291
I+G+ + TH EA
Sbjct: 54 IDGINAQGMTHLEA 67
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 235 LGFSIVGGRDSP---------KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
LGFSI GG D K + GI+V + + G AE L+ GD+I+ +NG +
Sbjct: 21 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGG-PAEIAGLQIGDKIMQVNGWDMTM 79
Query: 286 KTHAEA 291
TH +A
Sbjct: 80 VTHDQA 85
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 235 LGFSIVGGRDSP---------KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
LGFSI GG D K + GI+V + + G AE L+ GD+I+ +NG +
Sbjct: 19 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGG-PAEIAGLQIGDKIMQVNGWDMTM 77
Query: 286 KTHAEA 291
TH +A
Sbjct: 78 VTHDQA 83
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human Zona
Occludens-2
Length = 88
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
IFVK + ++G A ++ L EGD I+ ING EN + +A
Sbjct: 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDA 62
Score = 32.0 bits (71), Expect = 0.48, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 31/60 (51%)
Query: 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRN 91
S + + G +DG H GD ++K+N + +++ +AR+ + +++V+ R+
Sbjct: 21 SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRD 80
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 261 GQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
G AA+ +R+GD I+ +NGV +E TH + + + +
Sbjct: 53 GGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
pdb|2OSG|B Chain B, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
Length = 83
Score = 33.5 bits (75), Expect = 0.14, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
IFVK + ++G A ++ L EGD I+ ING EN + +A
Sbjct: 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDA 62
Score = 31.6 bits (70), Expect = 0.54, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 31/60 (51%)
Query: 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRN 91
S + + G +DG H GD ++K+N + +++ +AR+ + +++V+ R+
Sbjct: 21 SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRD 80
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 261 GQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
G AA+ +R+GD I+ +NGV +E TH + + + +
Sbjct: 53 GGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|1WIF|A Chain A, The Solution Structure Of Rsgi Ruh-020, A Pdz Domain Of
Hypothetical Protein From Mouse
Length = 126
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 33 PYL-ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN 79
PYL ISH+ GA DG GD LI V + G T++E + L N
Sbjct: 49 PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQN 96
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 222 FTVTFQKGPGQKSLGFSIVG--GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
+ V + GQ SLG IVG G GI+VK++ A N ++ D+I+A++
Sbjct: 17 YNVELVRKDGQ-SLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVD 75
Query: 280 GVPLENKTHAEAIAMFKD 297
GV ++ + + + + ++
Sbjct: 76 GVNIQGFANHDVVEVLRN 93
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 11 VKDDSNELGIYIERQDGGAHFSPYL--ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
VK + LGI IE GGA+ L I I+ GG+ H G+ VG +++VN L+G
Sbjct: 12 VKKSAATLGIAIE---GGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGK 68
Query: 69 TIQEA----REALNNKD 81
+EA EA KD
Sbjct: 69 EHREAARIIAEAFKTKD 85
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 234 SLGFSIVGGRDS----PKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHA 289
+LG +I GG ++ P+ + TI + G A +L+ G I+ +NG+ L K H
Sbjct: 18 TLGIAIEGGANTRQPLPR------IVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHR 71
Query: 290 EAIAMFKDIF 299
EA + + F
Sbjct: 72 EAARIIAEAF 81
>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue
Protein
Length = 103
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEA 291
GF + GG+D N+ + + ++ G+A++ +R GD +++I+G+ + TH EA
Sbjct: 17 WGFRLQGGKDF---NMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEA 69
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 261 GQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
G AA+ +R+GD I+ +NGV +E TH + + + +
Sbjct: 53 GGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
IFVK + + G A E L GD II +NG + KT+++ IA+ ++
Sbjct: 63 IFVKQVKEGGPAFE-AGLCTGDRIIKVNGESVIGKTYSQVIALIQN 107
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 35 LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDD 94
+ ++ GG G GD +IKVN + + G T + + N D+ +E+ + P D
Sbjct: 64 FVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVM--PKD 120
Query: 95 A 95
+
Sbjct: 121 S 121
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 32.7 bits (73), Expect = 0.24, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 18 LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL 77
LG+ + G+ +I+++ GG R G +GD L +N L GL + + A+
Sbjct: 23 LGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAV 82
Query: 78 NNKDSHVEIVI 88
S + +
Sbjct: 83 RETKSQTSVTL 93
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 236 GFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF 295
GF + D+P +FV+++ + G AA ++ GD II +NG + + H E + +
Sbjct: 19 GFGLTVSGDNP-----VFVQSVKEDG-AAMRAGVQTGDRIIKVNGTLVTHSNHLEVVKLI 72
Query: 296 K 296
K
Sbjct: 73 K 73
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK 80
SP L+ IEP R G VGD ++ +N + T++EA + L +
Sbjct: 45 SPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDA 93
>pdb|3R0H|A Chain A, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|B Chain B, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|C Chain C, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|D Chain D, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|E Chain E, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|F Chain F, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|G Chain G, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
pdb|3R0H|H Chain H, Structure Of Inad Pdz45 In Complex With Ng2 Peptide
Length = 206
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 232 QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL 283
+K +G + GG+++ G + ++ GQ A +++L+ D I ING P+
Sbjct: 28 KKPMGVIVCGGKNN-HVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPI 78
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 210 TVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKL 269
TV R L F V K G K LG S+ SP +G + + Q + KL
Sbjct: 103 TVFRADPPELEKFNVDLMKKAG-KELGLSL-----SPN-EIGCTIADLIQGQYPEIDSKL 155
Query: 270 REGDEIIAINGVPLENKTHAEAIAMFK 296
+ GD I NG LE A+FK
Sbjct: 156 QRGDIITKFNGDALEGLPFQVCYALFK 182
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 249 NLGIFVKT----------IFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
N G F++ + + G AE L +GD ++ INGV ++ + HA+ + + +
Sbjct: 15 NYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVR 72
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 249 NLGIFVKT----------IFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
N G F++ + + G AE L +GD ++ INGV ++ + HA+ + + +
Sbjct: 26 NYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVR 83
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse Glutamate
Receptor Interacting Protein 1a-L (Grip1) Homolog
Length = 122
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 269 LREGDEIIAINGVPLENKTHAEAIAMFKD 297
L+ GD ++AING+P E+ T EA + +D
Sbjct: 64 LQIGDRVMAINGIPTEDSTFEEANQLLRD 92
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84
SP LIS+IE R G +GD ++ +N + T +EA + L +DS +
Sbjct: 45 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLL--RDSSI 95
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 8 FRVVKDDSNE-LGIYIERQDG--------GAHFSP-YLISHIEPGGAIHRDGRFHVGDEL 57
R++K S++ LG YI +DG G P IS + PGG G V DE+
Sbjct: 8 VRLLKHGSDKPLGFYI--RDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEV 65
Query: 58 IKVNDKRLKGLTIQEAREALNNKDSHVEIVI 88
I+VN + G T+ + + + S++ I +
Sbjct: 66 IEVNGIEVAGKTLDQVTDMMVANSSNLIITV 96
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 251 GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF 295
GIF+ + G A L DE+I +NG+ + KT + M
Sbjct: 41 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 85
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 9 RVVKDDSNE-LGIYIERQDG--------GAHFSP-YLISHIEPGGAIHRDGRFHVGDELI 58
R++K S++ LG YI +DG G P IS + PGG G V DE+I
Sbjct: 7 RLLKHGSDKPLGFYI--RDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVI 64
Query: 59 KVNDKRLKGLTIQEAREALNNKDSHVEIVI 88
+VN + G T+ + + + S++ I +
Sbjct: 65 EVNGIEVAGKTLDQVTDMMVANSSNLIITV 94
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 224 VTFQKGPGQKSLGFSIVGG---RDSPKG---NLGIFVKTIFQSGQAAENEKLREGDEIIA 277
V K K LGF I G R + G GIF+ + G A L DE+I
Sbjct: 6 VRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIE 65
Query: 278 INGVPLENKTHAEAIAMF 295
+NG+ + KT + M
Sbjct: 66 VNGIEVAGKTLDQVTDMM 83
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 249 NLGIFVKT----------IFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
N G F++ + + G AE L +GD ++ INGV ++ + HA+ + + +
Sbjct: 14 NYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVR 71
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 8 FRVVKDDSNE-LGIYIERQDG--------GAHFSP-YLISHIEPGGAIHRDGRFHVGDEL 57
R++K S++ LG YI +DG G P IS + PGG G V DE+
Sbjct: 34 VRLLKHGSDKPLGFYI--RDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEV 91
Query: 58 IKVNDKRLKGLTIQEAREALNNKDSHVEIVI 88
I+VN + G T+ + + + S++ I +
Sbjct: 92 IEVNGIEVAGKTLDQVTDMMVANSSNLIITV 122
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 224 VTFQKGPGQKSLGFSIVGG---RDSPKG---NLGIFVKTIFQSGQAAENEKLREGDEIIA 277
V K K LGF I G R + G GIF+ + G A L DE+I
Sbjct: 34 VRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIE 93
Query: 278 INGVPLENKTHAEAIAMF 295
+NG+ + KT + M
Sbjct: 94 VNGIEVAGKTLDQVTDMM 111
>pdb|1UJV|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2 (Magi-2)
Length = 96
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
+ T+T KG + GF+I DSP G VK I L EGD I+ IN
Sbjct: 11 LMTLTIVKGA--QGFGFTIA---DSPTGQ---RVKQILD---IQGCPGLCEGDLIVEINQ 59
Query: 281 VPLENKTHAEAIAMFKD 297
++N +H E + + KD
Sbjct: 60 QNVQNLSHTEVVDILKD 76
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 32.0 bits (71), Expect = 0.50, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 226 FQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
+KGP + GF++ + P G +++++ G A LR D +I +NG +E
Sbjct: 10 LRKGP--QGYGFNLHSDKSRP----GQYIRSV-DPGSPAARSGLRAQDRLIEVNGQNVEG 62
Query: 286 KTHAEAIAMFK 296
HAE +A K
Sbjct: 63 LRHAEVVASIK 73
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 31.6 bits (70), Expect = 0.51, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 269 LREGDEIIAINGVPLENKTHAEAIAMFKD 297
L+ GD ++AING+P E+ T EA + +D
Sbjct: 55 LQIGDRVMAINGIPTEDSTFEEANQLLRD 83
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84
SP LIS+IE R G +GD ++ +N + T +EA + L +DS +
Sbjct: 36 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLL--RDSSI 86
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 8 FRVVKDDSNE-LGIYIERQDG--------GAHFSP-YLISHIEPGGAIHRDGRFHVGDEL 57
R+ K S++ LG YI +DG G P IS + PGG G V DE+
Sbjct: 34 VRLCKHGSDKPLGFYI--RDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEV 91
Query: 58 IKVNDKRLKGLTIQEAREALNNKDSHVEIVI 88
I+VN + G T+ + + + S++ I +
Sbjct: 92 IEVNGIEVAGKTLDQVTDMMVANSSNLIITV 122
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 233 KSLGFSIVGG---RDSPKG---NLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENK 286
K LGF I G R + G GIF+ + G A L DE+I +NG+ + K
Sbjct: 43 KPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGK 102
Query: 287 THAEAIAMF 295
T + M
Sbjct: 103 TLDQVTDMM 111
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 232 QKSLGFSIVGG---RDSPKG---NLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
+K LGF I G R +P G GIF+ + G A L DE++ +NG+ +
Sbjct: 41 EKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSG 100
Query: 286 KTHAEAIAMF 295
K+ + M
Sbjct: 101 KSLDQVTDMM 110
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 18 LGIYIERQDGGAHFSPY--------LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
LG YI R +P+ IS + PGG G V DE+++VN + G +
Sbjct: 44 LGFYI-RDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKS 102
Query: 70 IQEAREAL 77
+ + + +
Sbjct: 103 LDQVTDMM 110
>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2
Length = 117
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 7 VFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK 66
+ +VK + LGI + + S I I+P + R G H GD ++ ++ ++
Sbjct: 18 MVEIVKTPGSALGISLTTTSL-RNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSME 76
Query: 67 GLTIQEAREALNNKDSHVEIVICRNP 92
++ EA + L + V + I P
Sbjct: 77 HCSLLEATKLLASISEKVRLEILPVP 102
>pdb|4FHL|A Chain A, Nucleoporin Nup37 From Schizosaccharomyces Pombe
pdb|4FHM|A Chain A, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
pdb|4FHN|A Chain A, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|C Chain C, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 394
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 239 IVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIA 293
IVG R+ GN+ IF T+ S + +L + ++ +N +PL N H+ IA
Sbjct: 204 IVGERN---GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 255
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 231 GQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
G + LG SIV G GI+V + G A L GD+++ NG+ L + T +
Sbjct: 28 GSEPLGISIVSGEKG-----GIYVSKV-TVGSIAHQAGLEYGDQLLEFNGINLRSATEQQ 81
Query: 291 A 291
A
Sbjct: 82 A 82
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 11 VKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
V+ S LGI I + G + +S + G H+ G GD+L++ N L+ T
Sbjct: 25 VQKGSEPLGISIVSGEKGGIY----VSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATE 79
Query: 71 QEAREALNNKDSHVEIVICRNP 92
Q+AR + + + I+ NP
Sbjct: 80 QQARLIIGQQCDTITILAQYNP 101
>pdb|4GQ1|A Chain A, Nup37 Of S. Pombe
pdb|4GQ2|P Chain P, S. Pombe Nup120-Nup37 Complex
Length = 393
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 239 IVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIA 293
IVG R+ GN+ IF T+ S + +L + ++ +N +PL N H+ IA
Sbjct: 203 IVGERN---GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 254
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 19 GIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN 78
G+ +E G ++ PGG + G GD ++ V+ +KGL++ + + L
Sbjct: 86 GVGLEITYDGGSGKDVVVLTPAPGGPAEKAGA-RAGDVIVTVDGTAVKGLSLYDVSDLLQ 144
Query: 79 NK-DSHVEIVI 88
+ DS VE+V+
Sbjct: 145 GEADSQVEVVL 155
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 231 GQKSLGFSIVGGRD--SPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
G GF +VGGRD +P + +G A L GD I AING E TH
Sbjct: 10 GPSPWGFRLVGGRDFSAP------LTISRVHAGSKAALAALCPGDLIQAINGESTELMTH 63
Query: 289 AEA 291
EA
Sbjct: 64 LEA 66
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 231 GQKSLGFSIVGGRD--SPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTH 288
G GF +VGGRD +P + +G A L GD I AING E TH
Sbjct: 16 GPSPWGFRLVGGRDFSAP------LTISRVHAGSKAALAALCPGDLIQAINGESTELMTH 69
Query: 289 AEA 291
EA
Sbjct: 70 LEA 72
>pdb|2QKV|A Chain A, Crystal Structure Of The C645s Mutant Of The 5th Pdz
Domain Of Inad
pdb|2QKV|B Chain B, Crystal Structure Of The C645s Mutant Of The 5th Pdz
Domain Of Inad
Length = 96
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
SL F V K G K LG S+ SP +G + + Q + KL+ GD I
Sbjct: 6 SLEKFNVDLMKKAG-KELGLSL-----SPN-EIGCTIADLIQGQYPEIDSKLQRGDIITK 58
Query: 278 INGVPLENKTHAEAIAMFK 296
NG LE + A+FK
Sbjct: 59 FNGDALEGLPFQVSYALFK 77
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 29.3 bits (64), Expect = 2.9, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 259 QSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAM 294
+ G A LR+GD I +NG P+ H E + +
Sbjct: 44 EDGGPASEAGLRQGDLITHVNGEPVHGLVHTEVVEL 79
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 35 LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL---TIQEAREALNNKDS-HVEIVIC 89
+++++ GG R G+ +GD+++ +N L GL T Q + L N+ + IV C
Sbjct: 219 ILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSC 277
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To
The C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 28.9 bits (63), Expect = 3.3, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 228 KGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKT 287
+GPG GF +VGG+D + L I T G A L GD I AI+G N T
Sbjct: 10 QGPG--PWGFRLVGGKDFEQ-PLAISRVT---PGSKAALANLCIGDVITAIDGENTSNMT 63
Query: 288 HAEA 291
H EA
Sbjct: 64 HLEA 67
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAE--NEKLREGDEIIAINGVPLENKTHAEAI 292
GF++ GG D + + V + G A+ +L EGD+++ ING + TH + +
Sbjct: 31 FGFNVKGGYDQ---KMPVIVSRV-APGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVV 86
Query: 293 AMFK 296
K
Sbjct: 87 LFIK 90
>pdb|3L9Y|A Chain A, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM
The Silkworm Bombyx Mori And The Implications In
Amyotrophic Lateral Sclerosis
pdb|3L9Y|B Chain B, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM
The Silkworm Bombyx Mori And The Implications In
Amyotrophic Lateral Sclerosis
Length = 154
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 28 GAHFSPYLISHIEPGGAIHRDGRFHVGD--ELIKVNDKRLKGLTIQEAREALNNKDSHV- 84
GAHF+P H P A+ HVGD + + D + ++IQ+++ +L+ +S +
Sbjct: 60 GAHFNPEKQDHGGPSSAVR-----HVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIG 114
Query: 85 -EIVICRNPDDAKSATN 100
+V+ +PDD N
Sbjct: 115 RTLVVHADPDDLGLGGN 131
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAE--NEKLREGDEIIAINGVPLENKTHAEAI 292
GF++ GG D + + V + G A+ +L EGD+++ ING + TH + +
Sbjct: 29 FGFNVKGGYDQ---KMPVIVSRV-APGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVV 84
Query: 293 AMFK 296
K
Sbjct: 85 LFIK 88
>pdb|3L9E|A Chain A, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM
THE SILKWORM Bombyx Mori And The Implications In
Amyotrophic Lateral Sclerosis
pdb|3L9E|B Chain B, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM
THE SILKWORM Bombyx Mori And The Implications In
Amyotrophic Lateral Sclerosis
pdb|3L9E|C Chain C, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM
THE SILKWORM Bombyx Mori And The Implications In
Amyotrophic Lateral Sclerosis
pdb|3L9E|D Chain D, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM
THE SILKWORM Bombyx Mori And The Implications In
Amyotrophic Lateral Sclerosis
Length = 154
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 28 GAHFSPYLISHIEPGGAIHRDGRFHVGD--ELIKVNDKRLKGLTIQEAREALNNKDSHV- 84
GAHF+P H P A+ HVGD + + D + ++IQ+++ +L+ +S +
Sbjct: 60 GAHFNPEKQDHGGPSSAVR-----HVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIG 114
Query: 85 -EIVICRNPDD 94
+V+ +PDD
Sbjct: 115 RTLVVHADPDD 125
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAE--NEKLREGDEIIAINGVPLENKTHAEAI 292
GF++ GG D + + V + G A+ +L EGD+++ ING + TH + +
Sbjct: 18 FGFNVKGGYDQ---KMPVIVSRV-APGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVV 73
Query: 293 AMFK 296
K
Sbjct: 74 LFIK 77
>pdb|2LA8|A Chain A, Solution Structure Of Inad Pdz5 Complexed With Kon-Tiki
Peptide
Length = 106
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
L F V K G K LG S+ SP +G + + Q + KL+ GD I
Sbjct: 1 LEKFNVDLMKKAG-KELGLSL-----SPN-EIGCTIADLIQGQYPEIDSKLQRGDIITKF 53
Query: 279 NGVPLENKTHAEAIAMFK 296
NG LE A+FK
Sbjct: 54 NGDALEGLPFQVCYALFK 71
>pdb|2QKT|A Chain A, Crystal Structure Of The 5th Pdz Domain Of Inad
pdb|2QKT|B Chain B, Crystal Structure Of The 5th Pdz Domain Of Inad
Length = 90
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
L F V K G K LG S+ SP +G + + Q + KL+ GD I
Sbjct: 1 LEKFNVDLMKKAG-KELGLSL-----SPN-EIGCTIADLIQGQYPEIDSKLQRGDIITKF 53
Query: 279 NGVPLENKTHAEAIAMFK 296
NG LE A+FK
Sbjct: 54 NGDALEGLPFQVCYALFK 71
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 224 VTFQKGPGQKSLGFSI----VGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
+T +KG Q + GF I + R+ + + FV + +S A+ L GD I ++N
Sbjct: 8 LTLEKGDNQ-TFGFEIQTYGLHHREEQRVEMVTFVARVHES-SPAQLAGLTPGDTIASVN 65
Query: 280 GVPLENKTHAEAIAMFK 296
G+ +E H E + + K
Sbjct: 66 GLNVEGIRHREIVDIIK 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,350,122
Number of Sequences: 62578
Number of extensions: 326413
Number of successful extensions: 992
Number of sequences better than 100.0: 238
Number of HSP's better than 100.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 552
Number of HSP's gapped (non-prelim): 420
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)