Query psy8436
Match_columns 306
No_of_seqs 204 out of 2163
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 18:47:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3209|consensus 100.0 3.4E-32 7.4E-37 249.0 19.5 214 6-302 755-975 (984)
2 KOG3209|consensus 100.0 1E-26 2.2E-31 213.3 25.3 91 4-95 344-436 (984)
3 KOG3580|consensus 100.0 2E-27 4.3E-32 214.6 18.3 259 4-302 8-271 (1027)
4 KOG3580|consensus 99.9 1.1E-25 2.4E-30 203.4 18.7 266 4-303 199-481 (1027)
5 KOG3605|consensus 99.8 4.7E-21 1E-25 174.9 11.4 156 6-299 647-804 (829)
6 PF00595 PDZ: PDZ domain (Also 99.7 1.4E-17 3E-22 118.6 10.4 81 7-89 1-81 (81)
7 KOG3550|consensus 99.7 3.1E-16 6.7E-21 118.8 8.2 85 5-92 91-175 (207)
8 PF00595 PDZ: PDZ domain (Also 99.6 1.4E-15 2.9E-20 108.2 9.5 78 223-305 1-78 (81)
9 TIGR02037 degP_htrA_DO peripla 99.6 5.7E-15 1.2E-19 137.3 15.2 75 16-93 234-317 (428)
10 PRK10139 serine endoprotease; 99.6 1.1E-14 2.3E-19 135.6 16.9 75 16-93 267-350 (455)
11 KOG3550|consensus 99.6 1E-15 2.3E-20 115.9 7.4 77 220-301 90-166 (207)
12 PRK10942 serine endoprotease; 99.6 5.6E-14 1.2E-18 131.4 18.2 59 32-93 311-371 (473)
13 PRK10779 zinc metallopeptidase 99.6 1.1E-14 2.5E-19 135.8 13.4 58 34-94 128-187 (449)
14 KOG3551|consensus 99.5 5.5E-14 1.2E-18 122.1 9.3 87 6-94 86-172 (506)
15 KOG3549|consensus 99.5 4.1E-14 8.8E-19 121.4 7.9 89 1-91 51-139 (505)
16 TIGR00054 RIP metalloprotease 99.5 3.1E-13 6.7E-18 125.0 13.6 58 32-92 128-185 (420)
17 cd00992 PDZ_signaling PDZ doma 99.5 1.2E-12 2.6E-17 93.1 11.2 81 5-88 1-81 (82)
18 smart00228 PDZ Domain present 99.4 7.5E-12 1.6E-16 89.5 12.0 83 5-91 2-84 (85)
19 KOG3553|consensus 99.3 5E-13 1.1E-17 94.1 2.5 85 5-91 16-116 (124)
20 cd00136 PDZ PDZ domain, also c 99.3 1.2E-11 2.6E-16 85.2 9.4 67 17-88 2-69 (70)
21 KOG3551|consensus 99.3 4.1E-12 8.8E-17 110.6 7.6 81 219-303 83-163 (506)
22 KOG3553|consensus 99.3 3.4E-12 7.4E-17 89.9 5.8 80 219-299 14-107 (124)
23 KOG1892|consensus 99.3 6.6E-12 1.4E-16 119.8 9.4 91 2-94 931-1022(1629)
24 cd00136 PDZ PDZ domain, also c 99.3 1.8E-11 4E-16 84.2 9.0 66 234-305 2-67 (70)
25 cd00992 PDZ_signaling PDZ doma 99.3 8.1E-11 1.8E-15 83.6 10.9 74 222-300 2-75 (82)
26 PF13180 PDZ_2: PDZ domain; PD 99.2 1.2E-10 2.6E-15 82.8 9.9 71 17-93 2-74 (82)
27 KOG3549|consensus 99.2 4E-11 8.6E-16 103.2 6.6 80 219-302 53-132 (505)
28 KOG3571|consensus 99.2 9.9E-11 2.1E-15 105.3 8.8 90 4-93 249-341 (626)
29 KOG3571|consensus 99.2 8.7E-11 1.9E-15 105.6 8.1 81 218-300 247-327 (626)
30 KOG1892|consensus 99.1 1.1E-10 2.5E-15 111.6 8.4 79 219-300 932-1010(1629)
31 cd00988 PDZ_CTP_protease PDZ d 99.1 9E-10 1.9E-14 78.8 9.8 70 16-91 2-72 (85)
32 smart00228 PDZ Domain present 99.1 2.5E-09 5.4E-14 76.2 11.1 77 222-305 3-79 (85)
33 KOG3651|consensus 99.1 8.4E-10 1.8E-14 93.4 9.0 84 6-91 6-89 (429)
34 KOG3552|consensus 99.0 3.5E-10 7.7E-15 108.1 5.4 80 2-91 53-132 (1298)
35 cd00988 PDZ_CTP_protease PDZ d 99.0 2.1E-09 4.5E-14 76.9 7.8 66 233-305 2-67 (85)
36 KOG3606|consensus 99.0 1.9E-09 4.2E-14 89.9 7.4 86 5-90 159-252 (358)
37 PF13180 PDZ_2: PDZ domain; PD 98.9 5.1E-09 1.1E-13 74.4 7.7 65 234-305 2-67 (82)
38 cd00991 PDZ_archaeal_metallopr 98.9 1E-08 2.3E-13 72.2 8.8 59 32-93 10-70 (79)
39 cd00989 PDZ_metalloprotease PD 98.8 3.2E-08 6.9E-13 69.6 8.8 57 33-92 13-70 (79)
40 KOG0609|consensus 98.8 1.7E-08 3.8E-13 92.2 8.8 86 3-92 121-206 (542)
41 cd00990 PDZ_glycyl_aminopeptid 98.8 3.3E-08 7.1E-13 69.7 8.3 67 17-92 2-68 (80)
42 KOG3542|consensus 98.8 7.3E-09 1.6E-13 96.5 5.4 82 218-303 533-614 (1283)
43 KOG3552|consensus 98.8 1E-08 2.2E-13 98.3 6.2 72 220-303 55-126 (1298)
44 KOG4371|consensus 98.7 5.1E-08 1.1E-12 94.7 9.1 169 5-296 1148-1316(1332)
45 cd00987 PDZ_serine_protease PD 98.7 1E-07 2.2E-12 68.7 8.1 58 32-92 24-83 (90)
46 cd00986 PDZ_LON_protease PDZ d 98.7 1.5E-07 3.1E-12 66.3 8.5 58 32-93 8-67 (79)
47 PLN00049 carboxyl-terminal pro 98.7 1.4E-07 3E-12 86.6 10.5 79 14-93 83-163 (389)
48 TIGR00225 prc C-terminal pepti 98.6 1.6E-07 3.4E-12 84.7 9.9 73 15-93 50-123 (334)
49 KOG3542|consensus 98.6 6.3E-08 1.4E-12 90.4 6.6 88 4-95 535-623 (1283)
50 COG0793 Prc Periplasmic protea 98.6 1.9E-07 4E-12 85.9 9.4 73 14-91 98-171 (406)
51 cd00991 PDZ_archaeal_metallopr 98.6 1.6E-07 3.5E-12 66.1 6.8 52 250-304 10-62 (79)
52 KOG3605|consensus 98.6 4.7E-08 1E-12 90.8 4.8 81 220-303 645-726 (829)
53 cd00989 PDZ_metalloprotease PD 98.6 2.6E-07 5.6E-12 64.9 7.3 52 250-304 12-63 (79)
54 KOG0609|consensus 98.6 2.3E-07 5E-12 85.0 8.0 79 220-305 122-200 (542)
55 KOG3606|consensus 98.5 1.3E-07 2.8E-12 79.2 5.8 77 222-298 160-242 (358)
56 KOG3651|consensus 98.5 3.2E-07 6.9E-12 78.0 8.1 74 223-300 7-80 (429)
57 cd00990 PDZ_glycyl_aminopeptid 98.5 3.6E-07 7.9E-12 64.3 7.1 44 235-285 3-46 (80)
58 PRK11186 carboxy-terminal prot 98.5 3.7E-07 7.9E-12 88.3 8.9 71 16-91 244-320 (667)
59 PLN00049 carboxyl-terminal pro 98.5 4.9E-07 1.1E-11 83.1 8.6 72 233-305 85-156 (389)
60 COG0793 Prc Periplasmic protea 98.5 3.8E-07 8.3E-12 83.8 7.2 69 232-306 99-167 (406)
61 TIGR01713 typeII_sec_gspC gene 98.4 1.2E-06 2.6E-11 75.7 9.5 72 17-93 178-251 (259)
62 TIGR00225 prc C-terminal pepti 98.4 4.7E-07 1E-11 81.7 7.2 66 233-305 51-116 (334)
63 KOG3938|consensus 98.3 1E-06 2.2E-11 73.7 6.0 82 6-92 128-211 (334)
64 cd00986 PDZ_LON_protease PDZ d 98.3 2.3E-06 4.9E-11 60.1 7.0 51 250-304 8-59 (79)
65 PRK10942 serine endoprotease; 98.3 3.2E-06 7E-11 79.5 9.7 59 32-93 408-466 (473)
66 PRK11186 carboxy-terminal prot 98.3 1.2E-06 2.7E-11 84.8 6.9 67 233-305 244-315 (667)
67 cd00987 PDZ_serine_protease PD 98.3 2.1E-06 4.7E-11 61.7 6.6 52 250-304 24-76 (90)
68 PF04495 GRASP55_65: GRASP55/6 98.3 1.9E-05 4.1E-10 61.4 11.7 86 3-91 9-101 (138)
69 PRK10139 serine endoprotease; 98.3 2.7E-06 5.9E-11 79.6 8.4 59 32-93 390-448 (455)
70 TIGR02037 degP_htrA_DO peripla 98.3 3.3E-06 7.1E-11 78.8 8.3 59 32-93 362-422 (428)
71 TIGR02038 protease_degS peripl 98.2 5E-06 1.1E-10 75.5 8.0 59 32-93 278-338 (351)
72 TIGR00054 RIP metalloprotease 98.2 5.5E-06 1.2E-10 77.0 8.1 60 32-94 203-263 (420)
73 TIGR03279 cyano_FeS_chp putati 98.2 7.4E-06 1.6E-10 74.8 8.7 49 36-89 2-50 (433)
74 PRK10898 serine endoprotease; 98.2 6.8E-06 1.5E-10 74.5 8.5 59 32-93 279-339 (353)
75 KOG3834|consensus 98.1 4.4E-05 9.5E-10 68.4 12.0 59 32-91 15-73 (462)
76 KOG4407|consensus 98.1 4.2E-06 9.1E-11 83.4 5.7 51 251-302 144-194 (1973)
77 PRK10779 zinc metallopeptidase 98.1 1.3E-05 2.8E-10 75.2 8.1 58 33-93 222-280 (449)
78 KOG3938|consensus 98.0 1.1E-05 2.3E-10 67.7 4.8 77 219-302 125-201 (334)
79 TIGR02860 spore_IV_B stage IV 97.9 6.1E-05 1.3E-09 68.4 9.6 70 14-93 94-172 (402)
80 TIGR01713 typeII_sec_gspC gene 97.9 3.1E-05 6.7E-10 67.0 6.9 49 250-301 191-239 (259)
81 KOG1421|consensus 97.8 0.00038 8.2E-09 66.0 13.0 56 34-93 305-361 (955)
82 PF04495 GRASP55_65: GRASP55/6 97.8 0.0002 4.3E-09 55.7 8.7 83 220-305 10-96 (138)
83 PF14685 Tricorn_PDZ: Tricorn 97.8 0.00022 4.7E-09 50.8 8.0 71 17-93 2-81 (88)
84 TIGR02038 protease_degS peripl 97.7 6.8E-05 1.5E-09 68.1 6.2 52 250-304 278-330 (351)
85 PRK10898 serine endoprotease; 97.7 9.3E-05 2E-09 67.2 6.8 52 250-304 279-331 (353)
86 KOG0606|consensus 97.6 0.00014 3E-09 72.5 7.2 82 7-90 629-715 (1205)
87 COG3480 SdrC Predicted secrete 97.6 0.00063 1.4E-08 59.0 9.5 57 32-92 130-188 (342)
88 KOG3129|consensus 97.6 0.00026 5.7E-09 57.6 6.7 60 34-94 141-202 (231)
89 KOG1738|consensus 97.5 0.00018 4E-09 67.5 5.3 73 14-90 211-283 (638)
90 KOG1421|consensus 97.4 0.004 8.8E-08 59.3 12.9 50 250-303 862-911 (955)
91 KOG1320|consensus 97.4 0.0032 6.9E-08 58.4 12.0 47 250-299 398-444 (473)
92 COG0265 DegQ Trypsin-like seri 97.3 0.00053 1.1E-08 62.3 7.0 59 32-93 270-330 (347)
93 TIGR02860 spore_IV_B stage IV 97.3 0.00056 1.2E-08 62.3 6.8 62 233-305 96-165 (402)
94 KOG0606|consensus 97.3 0.00049 1.1E-08 68.7 6.5 75 223-302 629-709 (1205)
95 KOG1738|consensus 97.3 0.00023 5.1E-09 66.8 3.8 68 232-304 212-279 (638)
96 COG3975 Predicted protease wit 97.2 0.00098 2.1E-08 61.7 7.4 66 15-94 450-515 (558)
97 PRK09681 putative type II secr 97.1 0.0015 3.3E-08 56.5 6.9 49 43-94 218-268 (276)
98 PF14685 Tricorn_PDZ: Tricorn 97.0 0.003 6.6E-08 44.9 6.5 55 250-306 12-75 (88)
99 KOG3532|consensus 97.0 0.0031 6.7E-08 59.9 7.9 73 12-91 382-454 (1051)
100 COG3975 Predicted protease wit 97.0 0.00052 1.1E-08 63.5 2.7 50 234-290 452-503 (558)
101 COG3031 PulC Type II secretory 96.9 0.0075 1.6E-07 50.3 8.5 73 5-95 195-269 (275)
102 KOG3129|consensus 96.8 0.0025 5.3E-08 52.1 5.3 51 252-303 141-192 (231)
103 KOG1320|consensus 96.5 0.0075 1.6E-07 56.0 7.1 61 32-95 398-460 (473)
104 KOG4371|consensus 96.0 0.0082 1.8E-07 59.7 4.3 85 4-91 1245-1329(1332)
105 COG0265 DegQ Trypsin-like seri 95.9 0.02 4.4E-07 52.0 6.5 47 250-299 270-316 (347)
106 KOG3532|consensus 95.6 0.038 8.2E-07 52.9 6.9 65 233-305 386-450 (1051)
107 PF12812 PDZ_1: PDZ-like domai 95.5 0.045 9.7E-07 38.1 5.6 46 252-300 32-77 (78)
108 KOG4407|consensus 95.5 0.0071 1.5E-07 61.4 2.1 62 33-95 144-205 (1973)
109 COG3480 SdrC Predicted secrete 95.1 0.04 8.7E-07 48.1 5.1 48 250-301 130-177 (342)
110 KOG0792|consensus 94.8 0.2 4.3E-06 50.6 9.5 69 233-301 716-800 (1144)
111 PF12812 PDZ_1: PDZ-like domai 94.8 0.11 2.4E-06 36.1 5.7 47 33-82 31-77 (78)
112 PRK09681 putative type II secr 94.2 0.088 1.9E-06 45.7 5.1 34 265-301 222-255 (276)
113 KOG3834|consensus 91.7 0.9 2E-05 41.5 7.8 85 4-92 77-168 (462)
114 COG0750 Predicted membrane-ass 90.8 0.83 1.8E-05 41.8 7.0 53 35-90 132-188 (375)
115 KOG2921|consensus 87.2 1.1 2.3E-05 40.6 4.8 48 249-298 219-266 (484)
116 COG0750 Predicted membrane-ass 85.6 2.2 4.8E-05 39.0 6.3 44 253-299 132-175 (375)
117 KOG2921|consensus 85.3 1.7 3.6E-05 39.5 4.9 47 31-79 219-265 (484)
118 KOG0792|consensus 83.3 0.66 1.4E-05 47.0 1.8 73 8-80 708-797 (1144)
119 PF11874 DUF3394: Domain of un 81.8 2.3 4.9E-05 34.7 4.1 38 17-60 112-149 (183)
120 COG3031 PulC Type II secretory 81.6 2.7 5.8E-05 35.5 4.5 51 233-301 205-255 (275)
121 PF11874 DUF3394: Domain of un 74.7 5.7 0.00012 32.4 4.4 39 234-279 112-150 (183)
122 KOG1945|consensus 68.1 3 6.5E-05 37.3 1.5 77 14-90 108-188 (377)
123 PRK13810 orotate phosphoribosy 49.5 37 0.0008 27.9 4.8 37 48-84 116-152 (187)
124 PF07497 Rho_RNA_bind: Rho ter 48.8 41 0.00089 23.3 4.2 38 16-58 12-50 (78)
125 KOG1945|consensus 48.7 13 0.00028 33.4 2.1 75 222-298 101-178 (377)
126 KOG0708|consensus 46.9 21 0.00045 32.4 3.2 37 58-94 1-37 (359)
127 KOG3686|consensus 42.6 44 0.00095 33.3 4.9 74 4-89 592-665 (740)
128 PRK13810 orotate phosphoribosy 42.4 32 0.0007 28.2 3.5 36 267-302 117-152 (187)
129 COG5233 GRH1 Peripheral Golgi 41.6 17 0.00037 32.2 1.8 32 252-284 65-96 (417)
130 PRK03760 hypothetical protein; 41.1 31 0.00067 25.9 2.9 24 251-276 90-113 (117)
131 PRK15464 cold shock-like prote 39.8 1.2E+02 0.0025 20.5 5.5 37 14-58 14-52 (70)
132 TIGR01164 rplP_bact ribosomal 36.5 34 0.00075 26.1 2.6 28 267-299 94-121 (126)
133 cd01433 Ribosomal_L16_L10e Rib 36.4 32 0.0007 25.5 2.4 29 268-300 75-103 (112)
134 COG0461 PyrE Orotate phosphori 36.1 98 0.0021 25.8 5.3 40 45-84 103-142 (201)
135 PRK09203 rplP 50S ribosomal pr 35.1 36 0.00079 26.4 2.5 28 267-299 95-122 (138)
136 PRK13812 orotate phosphoribosy 32.9 53 0.0012 26.6 3.3 37 267-303 102-138 (176)
137 PRK04056 Maf-like protein; Rev 32.4 85 0.0018 25.6 4.4 36 269-304 64-100 (180)
138 TIGR01744 XPRTase xanthine pho 32.2 87 0.0019 25.8 4.5 34 51-84 114-147 (191)
139 PRK04199 rpl10e 50S ribosomal 32.1 86 0.0019 25.3 4.2 41 48-91 123-167 (172)
140 PF02643 DUF192: Uncharacteriz 32.0 42 0.00091 24.7 2.4 24 251-276 82-105 (108)
141 PRK00078 Maf-like protein; Rev 31.9 86 0.0019 25.8 4.4 35 269-303 67-102 (192)
142 PF07591 PT-HINT: Pretoxin HIN 31.5 29 0.00063 26.6 1.5 17 48-64 74-90 (130)
143 TIGR00172 maf MAF protein. Thi 31.1 87 0.0019 25.6 4.3 35 269-303 66-101 (183)
144 COG0424 Maf Nucleotide-binding 31.0 92 0.002 25.7 4.4 36 269-304 67-103 (193)
145 KOG4060|consensus 31.0 1.8E+02 0.0039 22.9 5.6 74 16-92 79-154 (176)
146 COG4100 Cystathionine beta-lya 31.0 36 0.00078 30.2 2.1 41 34-76 84-127 (416)
147 PRK14367 Maf-like protein; Pro 31.0 87 0.0019 26.1 4.3 35 269-303 72-107 (202)
148 PRK14364 Maf-like protein; Pro 30.9 92 0.002 25.4 4.4 35 269-303 60-95 (181)
149 PRK00148 Maf-like protein; Rev 30.9 80 0.0017 26.1 4.1 35 269-303 64-99 (194)
150 COG1625 Fe-S oxidoreductase, r 30.7 44 0.00096 30.9 2.7 34 35-69 4-38 (414)
151 PRK13809 orotate phosphoribosy 30.1 1E+02 0.0023 25.7 4.7 36 49-84 113-148 (206)
152 PRK09203 rplP 50S ribosomal pr 30.1 1E+02 0.0022 24.0 4.2 35 42-81 88-122 (138)
153 cd06919 Asp_decarbox Aspartate 30.0 39 0.00085 25.0 1.8 21 257-279 68-88 (111)
154 PRK14361 Maf-like protein; Pro 29.9 96 0.0021 25.4 4.3 36 269-304 61-97 (187)
155 PRK02478 Maf-like protein; Rev 29.5 94 0.002 25.8 4.3 35 269-303 72-107 (199)
156 TIGR01744 XPRTase xanthine pho 29.4 56 0.0012 26.9 2.9 35 269-303 114-148 (191)
157 PRK01526 Maf-like protein; Rev 29.4 97 0.0021 25.8 4.4 36 269-304 73-109 (205)
158 PLN02557 phosphoribosylformylg 29.1 1E+02 0.0022 28.5 4.8 62 17-79 171-242 (379)
159 PRK00648 Maf-like protein; Rev 29.0 1E+02 0.0022 25.4 4.4 35 269-303 68-103 (191)
160 cd00555 Maf Nucleotide binding 29.0 99 0.0021 25.1 4.3 35 269-303 63-98 (180)
161 cd03703 aeIF5B_II aeIF5B_II: T 28.9 1E+02 0.0022 22.9 3.9 12 48-59 24-35 (110)
162 COG5233 GRH1 Peripheral Golgi 28.7 34 0.00075 30.3 1.6 32 34-66 65-96 (417)
163 PRK14363 Maf-like protein; Pro 28.7 1.1E+02 0.0023 25.6 4.4 35 269-303 64-99 (204)
164 PRK04694 Maf-like protein; Rev 28.7 1E+02 0.0023 25.3 4.4 35 269-303 67-102 (190)
165 PRK14368 Maf-like protein; Pro 28.6 97 0.0021 25.6 4.2 35 269-303 68-103 (193)
166 PRK05500 bifunctional orotidin 28.4 1E+02 0.0023 29.3 4.8 39 46-84 385-423 (477)
167 TIGR01164 rplP_bact ribosomal 28.4 48 0.001 25.3 2.2 36 42-82 87-122 (126)
168 PRK09219 xanthine phosphoribos 28.3 1E+02 0.0022 25.3 4.3 35 50-84 113-147 (189)
169 COG0461 PyrE Orotate phosphori 28.3 72 0.0016 26.5 3.3 36 267-302 107-142 (201)
170 PRK04425 Maf-like protein; Rev 28.1 1.1E+02 0.0024 25.3 4.4 35 269-303 68-103 (196)
171 PF02563 Poly_export: Polysacc 28.1 37 0.0008 23.5 1.4 22 279-300 47-68 (82)
172 PLN02293 adenine phosphoribosy 28.1 1.2E+02 0.0025 24.9 4.6 36 49-84 120-155 (187)
173 PRK14362 Maf-like protein; Pro 28.1 1.2E+02 0.0025 25.5 4.6 35 269-303 76-111 (207)
174 PRK13809 orotate phosphoribosy 28.0 71 0.0015 26.7 3.3 36 267-302 113-148 (206)
175 PRK00032 Maf-like protein; Rev 28.0 1.1E+02 0.0023 25.2 4.3 35 269-303 66-101 (190)
176 COG4273 Uncharacterized conser 27.6 42 0.00092 25.5 1.7 31 253-284 49-79 (135)
177 PRK09219 xanthine phosphoribos 27.5 59 0.0013 26.7 2.7 36 268-303 113-148 (189)
178 PRK14365 Maf-like protein; Pro 27.4 1.1E+02 0.0024 25.3 4.4 35 269-303 66-101 (197)
179 PLN02293 adenine phosphoribosy 27.4 72 0.0016 26.1 3.2 37 267-303 120-156 (187)
180 cd01433 Ribosomal_L16_L10e Rib 27.4 52 0.0011 24.4 2.2 38 42-83 67-104 (112)
181 PRK05449 aspartate alpha-decar 27.3 47 0.001 25.3 1.9 21 257-279 69-89 (126)
182 PRK14366 Maf-like protein; Pro 27.2 1.1E+02 0.0024 25.3 4.3 35 269-303 69-104 (195)
183 PRK01839 Maf-like protein; Rev 27.2 1.1E+02 0.0023 25.7 4.3 35 269-303 84-119 (209)
184 PRK13812 orotate phosphoribosy 27.2 1.3E+02 0.0027 24.4 4.6 37 48-84 101-137 (176)
185 PRK02141 Maf-like protein; Rev 27.1 1.1E+02 0.0025 25.5 4.4 35 269-303 75-110 (207)
186 PF01455 HupF_HypC: HupF/HypC 26.8 64 0.0014 21.6 2.3 28 51-78 38-65 (68)
187 PTZ00173 60S ribosomal protein 26.5 1.1E+02 0.0024 25.6 4.1 39 50-91 128-170 (213)
188 TIGR00336 pyrE orotate phospho 26.5 75 0.0016 25.5 3.1 36 268-303 104-139 (173)
189 PRK00884 Maf-like protein; Rev 25.8 1.3E+02 0.0027 24.9 4.4 35 269-303 65-100 (194)
190 TIGR00336 pyrE orotate phospho 25.6 1.3E+02 0.0028 24.2 4.4 36 49-84 103-138 (173)
191 COG4100 Cystathionine beta-lya 25.6 55 0.0012 29.1 2.3 30 262-293 97-126 (416)
192 PRK01441 Maf-like protein; Rev 25.5 1.3E+02 0.0029 25.0 4.5 35 269-303 75-110 (207)
193 COG0853 PanD Aspartate 1-decar 25.3 49 0.0011 24.9 1.7 22 257-280 68-89 (126)
194 TIGR00223 panD L-aspartate-alp 25.0 54 0.0012 24.9 1.9 21 257-279 69-89 (126)
195 KOG1703|consensus 25.0 23 0.00049 33.8 -0.2 72 17-92 9-80 (479)
196 PRK00234 Maf-like protein; Rev 24.6 1.5E+02 0.0032 24.5 4.6 35 269-303 65-100 (192)
197 PRK04199 rpl10e 50S ribosomal 24.6 60 0.0013 26.2 2.2 30 267-299 124-153 (172)
198 KOG1712|consensus 23.5 3.8E+02 0.0082 21.6 6.3 51 34-84 99-152 (183)
199 KOG3369|consensus 23.3 46 0.001 26.8 1.3 27 45-72 47-73 (199)
200 PF06838 Met_gamma_lyase: Meth 22.8 58 0.0013 29.8 2.0 19 48-66 90-108 (403)
201 PRK05500 bifunctional orotidin 22.8 96 0.0021 29.6 3.5 38 265-302 386-423 (477)
202 PF02545 Maf: Maf-like protein 22.4 88 0.0019 25.8 2.9 35 270-304 68-103 (195)
203 CHL00044 rpl16 ribosomal prote 22.3 56 0.0012 25.3 1.5 27 268-299 96-122 (135)
204 COG1430 Uncharacterized conser 21.9 90 0.0019 23.8 2.6 24 252-277 96-119 (126)
205 PF08383 Maf_N: Maf N-terminal 21.2 88 0.0019 17.9 1.8 14 284-297 21-34 (35)
206 PRK12560 adenine phosphoribosy 20.3 2.1E+02 0.0044 23.4 4.6 34 51-84 111-144 (187)
207 cd04459 Rho_CSD Rho_CSD: Rho p 20.2 1.7E+02 0.0036 19.6 3.3 40 233-277 10-49 (68)
No 1
>KOG3209|consensus
Probab=100.00 E-value=3.4e-32 Score=249.00 Aligned_cols=214 Identities=24% Similarity=0.397 Sum_probs=153.7
Q ss_pred EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEE
Q psy8436 6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVE 85 (306)
Q Consensus 6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~ 85 (306)
.-|.|+|.+++||||.|....+.. ..| |..|.+||||+|||+|++||+|++|||+++.+++|.+.+.+||.+|-.|+
T Consensus 755 yDV~lhR~ENeGFGFVi~sS~~kp-~sg--iGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVt 831 (984)
T KOG3209|consen 755 YDVVLHRKENEGFGFVIMSSQNKP-ESG--IGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVT 831 (984)
T ss_pred eeeEEecccCCceeEEEEecccCC-CCC--ccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEE
Confidence 458899999999999999875542 134 99999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcccCcCCCCCCCCCCCCCCchhhhhccccccccc------CCCCCCCChhhhhcCccceeeecccCcccc
Q psy8436 86 IVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKS------LMPERQVSMPEIERNKTEVIATTQVSNEKS 159 (306)
Q Consensus 86 L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (306)
|+|.-.+.........+. ..+..+.... ..+..+.+..+
T Consensus 832 LtIip~ee~~~~~~~~sa----------------~~~s~~t~~~~~~q~~glp~~~~s~~~------------------- 876 (984)
T KOG3209|consen 832 LTIIPPEEAGPPTSMTSA----------------EKQSPFTQNGPYEQQYGLPGPRPSVYE------------------- 876 (984)
T ss_pred EEEcChhccCCCCCCcch----------------hhcCcccccCCHhHccCCCCCCccccc-------------------
Confidence 999865433211111000 0000000000 00000000000
Q ss_pred cccccccccccccccccceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCC-CCCCccceEEEEEEeCCCCCcccEE
Q psy8436 160 QTSNCSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKR-PKSLSLSMFTVTFQKGPGQKSLGFS 238 (306)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~l~k~~~~~~lG~~ 238 (306)
..+. +......... .......+++|+|.|+. .+|||+
T Consensus 877 ----------------------------------~~pq------pdt~~~~~~~~r~~qn~~~~~VelErG~--kGFGFS 914 (984)
T KOG3209|consen 877 ----------------------------------EHPQ------PDTFQGLSINDRMSQNGDLYTVELERGA--KGFGFS 914 (984)
T ss_pred ----------------------------------cCCC------CccccceeccccccccCCeeEEEeeccc--cccceE
Confidence 0000 0000000000 11234778999999995 799999
Q ss_pred EEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCc
Q psy8436 239 IVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQS 302 (306)
Q Consensus 239 l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~ 302 (306)
|+||.+. ++++||-++..+|||.++|++++||+|++|||++..+|+|..|+++||+-....
T Consensus 915 iRGGrey---nM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~v 975 (984)
T KOG3209|consen 915 IRGGREY---NMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRV 975 (984)
T ss_pred eeccccc---ccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEE
Confidence 9999876 489999999999999999999999999999999999999999999999865443
No 2
>KOG3209|consensus
Probab=99.96 E-value=1e-26 Score=213.34 Aligned_cols=91 Identities=19% Similarity=0.307 Sum_probs=81.6
Q ss_pred ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--C
Q psy8436 4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--D 81 (306)
Q Consensus 4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~ 81 (306)
++..++|+| ...||||+|.||++-..+.-+-|+.|.++|||+++|+|.+||.|+.|||..+.+.+|.+|+++++.. +
T Consensus 344 ~~ist~LvK-g~~GFGfTliGGdd~~gDefLqVKsvl~DGPAa~dGkle~GDviV~INg~cvlGhTHAqaV~~fqaiPvg 422 (984)
T KOG3209|consen 344 ELISTKLVK-GYMGFGFTLIGGDDVRGDEFLQVKSVLKDGPAAQDGKLETGDVIVHINGECVLGHTHAQAVKRFQAIPVG 422 (984)
T ss_pred eEEEEEEee-cccccceEEecCCcCCCCceeeeeecccCCchhhcCccccCcEEEEECCceeccccHHHHHHHhhccccC
Confidence 466788998 6789999999998544445688999999999999999999999999999999999999999999998 8
Q ss_pred CeEEEEEEeCCCCC
Q psy8436 82 SHVEIVICRNPDDA 95 (306)
Q Consensus 82 ~~v~L~v~r~~~~~ 95 (306)
..|.|+++|..+..
T Consensus 423 ~~V~L~lcRgyelp 436 (984)
T KOG3209|consen 423 QSVDLVLCRGYELP 436 (984)
T ss_pred CeeeEEEecCccCC
Confidence 89999999987655
No 3
>KOG3580|consensus
Probab=99.95 E-value=2e-27 Score=214.56 Aligned_cols=259 Identities=21% Similarity=0.271 Sum_probs=159.1
Q ss_pred ccEEEEEEeCCCCceeEEEEecCCCCcCC----CeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy8436 4 QFKVFRVVKDDSNELGIYIERQDGGAHFS----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN 79 (306)
Q Consensus 4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~----gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~ 79 (306)
|-++|+|.|++..||||.|.||.++.||. .|+|++|.||||| .|+||.||+|+.|||++|+++.|..|++.|++
T Consensus 8 EQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMenv~haFAvQqLrk 85 (1027)
T KOG3580|consen 8 EQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMENVLHAFAVQQLRK 85 (1027)
T ss_pred hhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhhhHHHHHHHHHHh
Confidence 34799999999999999999999988764 5999999999999 69999999999999999999999999999999
Q ss_pred CCCeEEEEEEeCCCCCcccCcCCCCCCCCCCCCCCch-hhhhcccccccccCCCCCCCChhhhhcCccceeeecccCccc
Q psy8436 80 KDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNI-IINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEK 158 (306)
Q Consensus 80 ~~~~v~L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (306)
|+....++|.|..+........ .+|-..+.... ...........+.+....+-.........++-......++.+
T Consensus 86 sgK~A~ItvkRprkvqvpa~~a----sPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R 161 (1027)
T KOG3580|consen 86 SGKVAAITVKRPRKVQVPALQA----SPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHER 161 (1027)
T ss_pred hccceeEEecccceeeccccCC----CCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCcccc
Confidence 9999999999987655322221 11111111111 011000000000000000000000000000000000111111
Q ss_pred ccccccccccccccccccceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCCCCCCccceEEEEEEeCCCCCcccEE
Q psy8436 159 SQTSNCSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFS 238 (306)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~~lG~~ 238 (306)
+.....+ .......+..... .++ + ......+| .....+..|.|.|...++.||+.
T Consensus 162 ~rsrer~-------------ls~~~~gprs~~r--~~~-s--------s~~~~p~p-~~~~~p~kv~LvKsR~nEEyGlr 216 (1027)
T KOG3580|consen 162 ARSRERD-------------LSRDRRGPRSRSR--EHP-S--------SRSPSPEP-RGRPGPIKVLLVKSRANEEYGLR 216 (1027)
T ss_pred ccccccc-------------cccCCCCCccccc--ccc-c--------CCCCCCCc-cCCCCcceEEEEeeccchhhccc
Confidence 0000000 0000000000000 000 0 00001111 12244567888888777899999
Q ss_pred EEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCc
Q psy8436 239 IVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQS 302 (306)
Q Consensus 239 l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~ 302 (306)
|. .-|||++|...|.|+++|.|+.||.||.|||+..++|+..+|..+|.++.++-
T Consensus 217 Lg---------SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL 271 (1027)
T KOG3580|consen 217 LG---------SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKL 271 (1027)
T ss_pred cc---------chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCce
Confidence 83 46999999999999999999999999999999999999999999999887654
No 4
>KOG3580|consensus
Probab=99.94 E-value=1.1e-25 Score=203.36 Aligned_cols=266 Identities=24% Similarity=0.394 Sum_probs=158.6
Q ss_pred ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436 4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH 83 (306)
Q Consensus 4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~ 83 (306)
++..+.++++.++.||+.+. ..|||+.|...|.|+++|.|+.||.||.|||+..++++..+|..+|..+...
T Consensus 199 p~kv~LvKsR~nEEyGlrLg--------SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GK 270 (1027)
T KOG3580|consen 199 PIKVLLVKSRANEEYGLRLG--------SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGK 270 (1027)
T ss_pred cceEEEEeeccchhhccccc--------chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCc
Confidence 46777778889999999997 6799999999999999999999999999999999999999999999999889
Q ss_pred EEEEEEeCCCCCcccCcCCCCCCCCCCCCCCchh--hhhcccccccccCCCC-C--CCChhhhhcCccceeeecccCccc
Q psy8436 84 VEIVICRNPDDAKSATNCDNLQPNPKNLPKKNII--INQRQKNIVEKSLMPE-R--QVSMPEIERNKTEVIATTQVSNEK 158 (306)
Q Consensus 84 v~L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~ 158 (306)
+.|+|.|+.... +...|+..+..... .+.. ..+...+..++ + +.+.........++ .......++
T Consensus 271 L~lvVlRD~~qt--------LiNiP~l~d~dSe~~disEi-~tms~rs~spp~rrs~~~s~d~~s~s~h~-p~~Ps~r~~ 340 (1027)
T KOG3580|consen 271 LQLVVLRDSQQT--------LINIPSLNDSDSEIEDISEI-ETMSDRSFSPPERRSQYSSYDYHSSSEHL-PERPSSRED 340 (1027)
T ss_pred eEEEEEecCCce--------eeecCCCccccccccchhhh-hccccccCCCchhhhhccCccccCchhcC-CCCCCcccc
Confidence 999999986554 22222222211000 0000 00111111111 1 00111000000000 000000000
Q ss_pred --cccccccccccccccc-ccceecccCC--CCCCcCccccCCCCCCCCCCCCCCCCcCCCCC-------CccceEEEEE
Q psy8436 159 --SQTSNCSKIRNKVTGM-RKFSCQFDGI--SPRRRQSVVDHNRSNVAATPNNSNATVKRPKS-------LSLSMFTVTF 226 (306)
Q Consensus 159 --~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~l 226 (306)
...+..+....++... .......... .....+. .++|.+.. .......|+. .....+.|.+
T Consensus 341 ~~~R~s~~gat~tPvks~~d~~~~~V~e~t~e~~~~q~-p~lP~pk~------~~~~~~~pS~~~m~~ygysP~tk~VrF 413 (1027)
T KOG3580|consen 341 TPSRLSRMGATPTPVKSTGDIAGTVVPETTKEPRYQQE-PPLPQPKA------APRTFLRPSPEDMAIYGYSPNTKMVRF 413 (1027)
T ss_pred chhhcccCCCCCCCccCccccCCccccccccCcccccC-CCCCCccc------CcceeeecCHHHHHHhcCCCCceeEEe
Confidence 0000000000000000 0000000000 0000000 01111110 0011111111 1244578888
Q ss_pred EeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCce
Q psy8436 227 QKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 227 ~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~ 303 (306)
.|+ .+.|+.|+||+| .||||..|..|+||++.| |+.||+||.||.+++.++..+|||..|-.+|++..
T Consensus 414 ~KG---dSvGLRLAGGND-----VGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEe 481 (1027)
T KOG3580|consen 414 KKG---DSVGLRLAGGND-----VGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEE 481 (1027)
T ss_pred ecC---CeeeeEeccCCc-----eeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcE
Confidence 888 579999999998 799999999999999998 99999999999999999999999999999998764
No 5
>KOG3605|consensus
Probab=99.85 E-value=4.7e-21 Score=174.90 Aligned_cols=156 Identities=24% Similarity=0.458 Sum_probs=135.7
Q ss_pred EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC--e
Q psy8436 6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS--H 83 (306)
Q Consensus 6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~--~ 83 (306)
+.|.|.|..++.||+.|+...++.-.+.++|.++..+|||+|+|.|.+||+|++|||.+|.++....+..++|...+ .
T Consensus 647 KEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~ 726 (829)
T KOG3605|consen 647 KEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTA 726 (829)
T ss_pred ceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccce
Confidence 57889999999999999999898878889999999999999999999999999999999999999999999999855 4
Q ss_pred EEEEEEeCCCCCcccCcCCCCCCCCCCCCCCchhhhhcccccccccCCCCCCCChhhhhcCccceeeecccCcccccccc
Q psy8436 84 VEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQTSN 163 (306)
Q Consensus 84 v~L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (306)
|+|.|.+....
T Consensus 727 VkltiV~cpPV--------------------------------------------------------------------- 737 (829)
T KOG3605|consen 727 VKLNIVSCPPV--------------------------------------------------------------------- 737 (829)
T ss_pred EEEEEecCCCc---------------------------------------------------------------------
Confidence 88888764321
Q ss_pred cccccccccccccceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCCCCCCccceEEEEEEeCCCCCcccEEEEcCC
Q psy8436 164 CSKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGR 243 (306)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~~lG~~l~gg~ 243 (306)
.+|.|+|..-...|||++..
T Consensus 738 ----------------------------------------------------------~~V~I~RPd~kyQLGFSVQN-- 757 (829)
T KOG3605|consen 738 ----------------------------------------------------------TTVLIRRPDLRYQLGFSVQN-- 757 (829)
T ss_pred ----------------------------------------------------------eEEEeecccchhhccceeeC--
Confidence 25666666555679999963
Q ss_pred CCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436 244 DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF 299 (306)
Q Consensus 244 ~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~ 299 (306)
|| |+++..||.|++-| +|+|-||+||||++|.-..|+..|++|..+-
T Consensus 758 -------Gi-ICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aV 804 (829)
T KOG3605|consen 758 -------GI-ICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAV 804 (829)
T ss_pred -------cE-eehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHhh
Confidence 44 78889999999965 9999999999999999999999999998653
No 6
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.75 E-value=1.4e-17 Score=118.59 Aligned_cols=81 Identities=20% Similarity=0.426 Sum_probs=74.5
Q ss_pred EEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEE
Q psy8436 7 VFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEI 86 (306)
Q Consensus 7 ~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L 86 (306)
+|.|.|...++|||++.++..+. ..++||..|.++|||+++| |++||+|++|||+++.++++++++.+++.++..|+|
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~-~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L 78 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDND-EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTL 78 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSS-SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCC-cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEE
Confidence 47899988899999999997653 3489999999999999999 999999999999999999999999999999889999
Q ss_pred EEE
Q psy8436 87 VIC 89 (306)
Q Consensus 87 ~v~ 89 (306)
+|+
T Consensus 79 ~V~ 81 (81)
T PF00595_consen 79 TVQ 81 (81)
T ss_dssp EEE
T ss_pred EEC
Confidence 884
No 7
>KOG3550|consensus
Probab=99.66 E-value=3.1e-16 Score=118.78 Aligned_cols=85 Identities=31% Similarity=0.464 Sum_probs=77.4
Q ss_pred cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436 5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84 (306)
Q Consensus 5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v 84 (306)
-|.|+|.| ..+||||.|.||..-. ..|||+.|.|||.|++.|.|+-||++|+|||+++++-.|+.|+.+|+.+-+.|
T Consensus 91 prvvelpk-tdeglgfnvmggkeqn--spiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsv 167 (207)
T KOG3550|consen 91 PRVVELPK-TDEGLGFNVMGGKEQN--SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSV 167 (207)
T ss_pred CceeecCc-cccccceeeccCcccC--CceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcE
Confidence 47889999 4679999999996543 68999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEeCC
Q psy8436 85 EIVICRNP 92 (306)
Q Consensus 85 ~L~v~r~~ 92 (306)
.|+|+..+
T Consensus 168 klvvrytp 175 (207)
T KOG3550|consen 168 KLVVRYTP 175 (207)
T ss_pred EEEEecCh
Confidence 99998654
No 8
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.64 E-value=1.4e-15 Score=108.25 Aligned_cols=78 Identities=31% Similarity=0.575 Sum_probs=68.3
Q ss_pred EEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCc
Q psy8436 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQS 302 (306)
Q Consensus 223 ~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~ 302 (306)
+|++.|.. ..+|||.+.++.+.. ..++||.+|.++|+|+++| |++||+|++|||+++.+++|++++.+|+..++ .
T Consensus 1 ~v~l~k~~-~~~lG~~l~~~~~~~--~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~-~ 75 (81)
T PF00595_consen 1 QVTLEKSG-NGPLGFTLRGGSDND--EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASN-P 75 (81)
T ss_dssp EEEEEEST-TSBSSEEEEEESTSS--SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTS-E
T ss_pred CEEEEeCC-CCCcCEEEEecCCCC--cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCC-c
Confidence 47788863 589999999988742 2489999999999999999 99999999999999999999999999999887 5
Q ss_pred eec
Q psy8436 303 SKL 305 (306)
Q Consensus 303 ~~l 305 (306)
+.|
T Consensus 76 v~L 78 (81)
T PF00595_consen 76 VTL 78 (81)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 9
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.63 E-value=5.7e-15 Score=137.33 Aligned_cols=75 Identities=23% Similarity=0.420 Sum_probs=58.1
Q ss_pred CceeEEEEecCCC-------CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEE
Q psy8436 16 NELGIYIERQDGG-------AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEI 86 (306)
Q Consensus 16 ~~lG~~i~gg~~~-------~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L 86 (306)
..||+.+..-... ....|++|..|.++|||+++| |+.||+|++|||+.+.+ +.+...++.. .+..+.|
T Consensus 234 ~~lGi~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~--~~~~~~~l~~~~~g~~v~l 310 (428)
T TIGR02037 234 GWLGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISS--FADLRRAIGTLKPGKKVTL 310 (428)
T ss_pred CcCceEeecCCHHHHHHcCCCCCCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEE
Confidence 4578877654210 012589999999999999999 99999999999999984 5666666654 4678999
Q ss_pred EEEeCCC
Q psy8436 87 VICRNPD 93 (306)
Q Consensus 87 ~v~r~~~ 93 (306)
+|.|+..
T Consensus 311 ~v~R~g~ 317 (428)
T TIGR02037 311 GILRKGK 317 (428)
T ss_pred EEEECCE
Confidence 9998653
No 10
>PRK10139 serine endoprotease; Provisional
Probab=99.63 E-value=1.1e-14 Score=135.61 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=58.3
Q ss_pred CceeEEEEecCC------C-CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEE
Q psy8436 16 NELGIYIERQDG------G-AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEI 86 (306)
Q Consensus 16 ~~lG~~i~gg~~------~-~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L 86 (306)
.-||+.+..-.. + ....|++|..|.++|||+++| |+.||+|++|||+.+. ++.+....+.. .++.+.|
T Consensus 267 ~~LGv~~~~l~~~~~~~lgl~~~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l 343 (455)
T PRK10139 267 GLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKL 343 (455)
T ss_pred cceeEEEEECCHHHHHhcCCCCCCceEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEE
Confidence 357887754310 0 112589999999999999999 9999999999999999 56777777764 4778999
Q ss_pred EEEeCCC
Q psy8436 87 VICRNPD 93 (306)
Q Consensus 87 ~v~r~~~ 93 (306)
+|.|...
T Consensus 344 ~V~R~G~ 350 (455)
T PRK10139 344 GLLRNGK 350 (455)
T ss_pred EEEECCE
Confidence 9998653
No 11
>KOG3550|consensus
Probab=99.62 E-value=1e-15 Score=115.94 Aligned_cols=77 Identities=29% Similarity=0.597 Sum_probs=70.7
Q ss_pred ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF 299 (306)
Q Consensus 220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~ 299 (306)
.++.|+|.|.. ++|||.+.||++. +.+|||++|.|||.|++.|+|+.||++|+|||+++++-.|+.|+++||.+.
T Consensus 90 hprvvelpktd--eglgfnvmggkeq---nspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~ 164 (207)
T KOG3550|consen 90 HPRVVELPKTD--EGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAV 164 (207)
T ss_pred CCceeecCccc--cccceeeccCccc---CCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhc
Confidence 35679999985 7999999999987 479999999999999999999999999999999999999999999999876
Q ss_pred CC
Q psy8436 300 PQ 301 (306)
Q Consensus 300 ~~ 301 (306)
+.
T Consensus 165 gs 166 (207)
T KOG3550|consen 165 GS 166 (207)
T ss_pred Cc
Confidence 54
No 12
>PRK10942 serine endoprotease; Provisional
Probab=99.60 E-value=5.6e-14 Score=131.40 Aligned_cols=59 Identities=17% Similarity=0.357 Sum_probs=50.6
Q ss_pred CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCCC
Q psy8436 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNPD 93 (306)
Q Consensus 32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~~ 93 (306)
.|++|..|.++|||+++| |+.||+|++|||+.+.+ +++....+... ++.+.|+|.|+..
T Consensus 311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~G~ 371 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISS--FAALRAQVGTMPVGSKLTLGLLRDGK 371 (473)
T ss_pred CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCe
Confidence 589999999999999999 99999999999999995 56666666543 6789999998753
No 13
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.60 E-value=1.1e-14 Score=135.79 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=46.9
Q ss_pred eEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHh--cCCCeEEEEEEeCCCC
Q psy8436 34 YLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN--NKDSHVEIVICRNPDD 94 (306)
Q Consensus 34 i~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~--~~~~~v~L~v~r~~~~ 94 (306)
.+|..|.++|||+++| ||.||+|++|||+.+.++ ++....+. ..++.+.++|.|+.+.
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~gk~ 187 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPFGSD 187 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeCCcc
Confidence 4689999999999999 999999999999999965 44444433 3356899999997643
No 14
>KOG3551|consensus
Probab=99.51 E-value=5.5e-14 Score=122.09 Aligned_cols=87 Identities=32% Similarity=0.422 Sum_probs=81.5
Q ss_pred EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEE
Q psy8436 6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVE 85 (306)
Q Consensus 6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~ 85 (306)
|+|.+.|-+.+||||+|.||+.|+ -.|+|++|.+|=+|++.+.|..||-||+|||.++..++|++|++.||.+|..|.
T Consensus 86 R~V~V~K~d~gGLGISIKGGreNk--MPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~ 163 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGRENK--MPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVL 163 (506)
T ss_pred ceeEEEEecCCcceEEeecCcccC--CceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceee
Confidence 899999999999999999998886 789999999999999999999999999999999999999999999999999998
Q ss_pred EEEEeCCCC
Q psy8436 86 IVICRNPDD 94 (306)
Q Consensus 86 L~v~r~~~~ 94 (306)
|.|....+.
T Consensus 164 levKy~REv 172 (506)
T KOG3551|consen 164 LEVKYMREV 172 (506)
T ss_pred eeeeeehhc
Confidence 888765544
No 15
>KOG3549|consensus
Probab=99.51 E-value=4.1e-14 Score=121.35 Aligned_cols=89 Identities=22% Similarity=0.325 Sum_probs=82.5
Q ss_pred CccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436 1 MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK 80 (306)
Q Consensus 1 ~~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~ 80 (306)
||..-|+|+|.|..-+|||++|.||..-+ -+++|++|.+.-.|+..|.|-+||-||.|||+.++.++|++++.+||++
T Consensus 51 ~~s~eRtVtirRQ~vGGlGLSIKGGaEHn--~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNA 128 (505)
T KOG3549|consen 51 MESKERTVTIRRQKVGGLGLSIKGGAEHN--LPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNA 128 (505)
T ss_pred ccCCceeEEEEeeecCcceeeeccccccC--ccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhc
Confidence 67788999999999999999999995432 5799999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEeC
Q psy8436 81 DSHVEIVICRN 91 (306)
Q Consensus 81 ~~~v~L~v~r~ 91 (306)
|+.|+|+|..-
T Consensus 129 GdeVtlTV~~l 139 (505)
T KOG3549|consen 129 GDEVTLTVKHL 139 (505)
T ss_pred CCEEEEEeHhh
Confidence 99999999754
No 16
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.50 E-value=3.1e-13 Score=124.98 Aligned_cols=58 Identities=17% Similarity=0.358 Sum_probs=47.8
Q ss_pred CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCC
Q psy8436 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNP 92 (306)
Q Consensus 32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~ 92 (306)
.|.+|..|.++|||+++| |+.||+|++|||+.+.++ .+....+....+.+.+.+.|..
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~--~dl~~~ia~~~~~v~~~I~r~g 185 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGF--KDVRQQIADIAGEPMVEILAER 185 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhcccceEEEEEec
Confidence 578899999999999999 999999999999999954 5555555544477888888853
No 17
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.46 E-value=1.2e-12 Score=93.07 Aligned_cols=81 Identities=31% Similarity=0.544 Sum_probs=71.1
Q ss_pred cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436 5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84 (306)
Q Consensus 5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v 84 (306)
.+.+.+.+....+|||.+.+.... ..|++|..|.+++||+++| |++||+|++|||.++..+++.++..+++.....+
T Consensus 1 ~~~~~l~~~~~~~~G~~~~~~~~~--~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v 77 (82)
T cd00992 1 VRTVTLRKDPGGGLGFSLRGGKDS--GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEV 77 (82)
T ss_pred CEEEEEEeCCCCCcCEEEeCcccC--CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeE
Confidence 367889997788999999876542 2579999999999999988 9999999999999999999999999999987677
Q ss_pred EEEE
Q psy8436 85 EIVI 88 (306)
Q Consensus 85 ~L~v 88 (306)
.|+|
T Consensus 78 ~l~v 81 (82)
T cd00992 78 TLTV 81 (82)
T ss_pred EEEE
Confidence 7776
No 18
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.40 E-value=7.5e-12 Score=89.46 Aligned_cols=83 Identities=24% Similarity=0.432 Sum_probs=72.6
Q ss_pred cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436 5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84 (306)
Q Consensus 5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v 84 (306)
...+.+.+.. ..|||.+..+.... .+++|..|.++++|+++| |++||+|++|||+.+.++++.+...+++.++..+
T Consensus 2 ~~~~~~~~~~-~~~G~~~~~~~~~~--~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~ 77 (85)
T smart00228 2 PRLVELEKGG-GGLGFSLVGGKDEG--GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKV 77 (85)
T ss_pred cEEEEEEECC-CcccEEEECCCCCC--CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence 4567888866 89999998664322 579999999999999999 9999999999999999999999999999887789
Q ss_pred EEEEEeC
Q psy8436 85 EIVICRN 91 (306)
Q Consensus 85 ~L~v~r~ 91 (306)
.|++.|.
T Consensus 78 ~l~i~r~ 84 (85)
T smart00228 78 TLTVLRG 84 (85)
T ss_pred EEEEEeC
Confidence 9998875
No 19
>KOG3553|consensus
Probab=99.33 E-value=5e-13 Score=94.07 Aligned_cols=85 Identities=14% Similarity=0.199 Sum_probs=69.2
Q ss_pred cEEEEEEeCC---CC-----ceeEEEEecCCC--------CcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCC
Q psy8436 5 FKVFRVVKDD---SN-----ELGIYIERQDGG--------AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68 (306)
Q Consensus 5 ~~~v~l~r~~---~~-----~lG~~i~gg~~~--------~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~ 68 (306)
...|+|+|.. .+ -+||.|-||.+- ..+.||||..|.+||||+.+| |+.+|.||.|||-+..-+
T Consensus 16 si~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMv 94 (124)
T KOG3553|consen 16 SIRVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMV 94 (124)
T ss_pred EEEEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEE
Confidence 3456676642 12 489999998321 134599999999999999999 999999999999999999
Q ss_pred CHHHHHHHHhcCCCeEEEEEEeC
Q psy8436 69 TIQEAREALNNKDSHVEIVICRN 91 (306)
Q Consensus 69 ~~~~a~~~l~~~~~~v~L~v~r~ 91 (306)
+|++|+..|++. ..++|.|.|.
T Consensus 95 THd~Avk~i~k~-~vl~mLVaR~ 116 (124)
T KOG3553|consen 95 THDQAVKRITKE-EVLRMLVARQ 116 (124)
T ss_pred EhHHHHHHhhHh-HHHHHHHHhh
Confidence 999999999985 5678888775
No 20
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.33 E-value=1.2e-11 Score=85.17 Aligned_cols=67 Identities=27% Similarity=0.513 Sum_probs=60.4
Q ss_pred ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC-CeEEEEE
Q psy8436 17 ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD-SHVEIVI 88 (306)
Q Consensus 17 ~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~-~~v~L~v 88 (306)
+|||.+.+... .+++|..|.+++||+++| |++||+|++|||.++.+++++++..+|+... ..|.|+|
T Consensus 2 ~~G~~~~~~~~----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 68999987654 369999999999999988 9999999999999999999999999999875 6788876
No 21
>KOG3551|consensus
Probab=99.32 E-value=4.1e-12 Score=110.60 Aligned_cols=81 Identities=31% Similarity=0.423 Sum_probs=72.6
Q ss_pred cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436 219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298 (306)
Q Consensus 219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~ 298 (306)
...+.|.+.|... ++|||+|.||++.. ++|.|+.|.+|-+|++.+.|..||-||+|||.++.+.||+|||+.||++
T Consensus 83 ~~~R~V~V~K~d~-gGLGISIKGGreNk---MPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKra 158 (506)
T KOG3551|consen 83 EAERRVRVVKQDA-GGLGISIKGGRENK---MPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRA 158 (506)
T ss_pred cccceeEEEEecC-CcceEEeecCcccC---CceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhh
Confidence 3447788888875 89999999999864 7999999999999999999999999999999999999999999999998
Q ss_pred CCCce
Q psy8436 299 FPQSS 303 (306)
Q Consensus 299 ~~~~~ 303 (306)
.+..+
T Consensus 159 GkeV~ 163 (506)
T KOG3551|consen 159 GKEVL 163 (506)
T ss_pred Cceee
Confidence 76543
No 22
>KOG3553|consensus
Probab=99.32 E-value=3.4e-12 Score=89.88 Aligned_cols=80 Identities=29% Similarity=0.373 Sum_probs=65.7
Q ss_pred cceEEEEEEeCC-----C--CCcccEEEEcCCCCCC-------CCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCC
Q psy8436 219 LSMFTVTFQKGP-----G--QKSLGFSIVGGRDSPK-------GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLE 284 (306)
Q Consensus 219 ~~~~~v~l~k~~-----~--~~~lG~~l~gg~~~~~-------~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~ 284 (306)
|-...|+|.|.. | +--+||.|-||.|... .+.||||.+|..||||+.+| |+.+|.||+|||.++.
T Consensus 14 clsi~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfT 92 (124)
T KOG3553|consen 14 CLSIRVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFT 92 (124)
T ss_pred EEEEEEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeE
Confidence 444567776653 1 1247999999988532 26799999999999999999 9999999999999999
Q ss_pred CCCHHHHHHHHhhcC
Q psy8436 285 NKTHAEAIAMFKDIF 299 (306)
Q Consensus 285 ~~~~~eav~~Lk~~~ 299 (306)
=+||.+|+..|++.+
T Consensus 93 MvTHd~Avk~i~k~~ 107 (124)
T KOG3553|consen 93 MVTHDQAVKRITKEE 107 (124)
T ss_pred EEEhHHHHHHhhHhH
Confidence 999999999998854
No 23
>KOG1892|consensus
Probab=99.31 E-value=6.6e-12 Score=119.83 Aligned_cols=91 Identities=23% Similarity=0.429 Sum_probs=79.7
Q ss_pred ccccEEEEEEeCCCCceeEEEEecCC-CCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC
Q psy8436 2 EKQFKVFRVVKDDSNELGIYIERQDG-GAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK 80 (306)
Q Consensus 2 ~~~~~~v~l~r~~~~~lG~~i~gg~~-~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~ 80 (306)
|-++.+|+|.|. +|+|++|+.-.+ +.+.-||||++|.+||+|+.+|||..||++|+|||.+|.+.+.+.|..++-..
T Consensus 931 ~pei~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrt 1008 (1629)
T KOG1892|consen 931 EPEIITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRT 1008 (1629)
T ss_pred CCceEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhcc
Confidence 346888999995 689999987644 33345999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEeCCCC
Q psy8436 81 DSHVEIVICRNPDD 94 (306)
Q Consensus 81 ~~~v~L~v~r~~~~ 94 (306)
|..|.|.|+.....
T Consensus 1009 g~vV~leVaKqgAi 1022 (1629)
T KOG1892|consen 1009 GNVVHLEVAKQGAI 1022 (1629)
T ss_pred CCeEEEehhhhhhH
Confidence 99999999876543
No 24
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.31 E-value=1.8e-11 Score=84.23 Aligned_cols=66 Identities=32% Similarity=0.510 Sum_probs=59.0
Q ss_pred cccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436 234 SLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL 305 (306)
Q Consensus 234 ~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l 305 (306)
+|||.+.+..+ .+++|..|.+++||+++| |++||+|++|||.++.+++++++..+|+..++..+.|
T Consensus 2 ~~G~~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l 67 (70)
T cd00136 2 GLGFSIRGGTE-----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTL 67 (70)
T ss_pred CccEEEecCCC-----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEE
Confidence 58999987664 389999999999999877 9999999999999999999999999999988666655
No 25
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.27 E-value=8.1e-11 Score=83.56 Aligned_cols=74 Identities=45% Similarity=0.689 Sum_probs=63.2
Q ss_pred EEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP 300 (306)
Q Consensus 222 ~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~ 300 (306)
+.+.+.+.. ..+|||.+.+..+. ..|++|..|.++++|+++| |++||+|++|||.++.++++.++..+|+....
T Consensus 2 ~~~~l~~~~-~~~~G~~~~~~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~ 75 (82)
T cd00992 2 RTVTLRKDP-GGGLGFSLRGGKDS---GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGD 75 (82)
T ss_pred EEEEEEeCC-CCCcCEEEeCcccC---CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCC
Confidence 357777774 36899999876543 2489999999999999977 99999999999999999999999999998665
No 26
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.22 E-value=1.2e-10 Score=82.78 Aligned_cols=71 Identities=17% Similarity=0.411 Sum_probs=57.9
Q ss_pred ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCCC
Q psy8436 17 ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD 93 (306)
Q Consensus 17 ~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~~ 93 (306)
.||+.+...... .|++|..|.++|||+++| |++||+|++|||+.+. +..+....+.. .+..|.|+|.|...
T Consensus 2 ~lGv~~~~~~~~---~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g~ 74 (82)
T PF13180_consen 2 GLGVTVQNLSDT---GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDGE 74 (82)
T ss_dssp E-SEEEEECSCS---SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred EECeEEEEccCC---CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 588888766542 479999999999999999 9999999999999997 56777777754 37789999999764
No 27
>KOG3549|consensus
Probab=99.18 E-value=4e-11 Score=103.19 Aligned_cols=80 Identities=25% Similarity=0.410 Sum_probs=72.9
Q ss_pred cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436 219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298 (306)
Q Consensus 219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~ 298 (306)
...++|+|++.+ .+|||++|.||.+-. .+++|+.|.++-+|+..|.|-+||-||+|||+.+...+|+|+|++||++
T Consensus 53 s~eRtVtirRQ~-vGGlGLSIKGGaEHn---~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNA 128 (505)
T KOG3549|consen 53 SKERTVTIRRQK-VGGLGLSIKGGAEHN---LPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNA 128 (505)
T ss_pred CCceeEEEEeee-cCcceeeeccccccC---ccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhc
Confidence 446789998887 589999999999874 7999999999999999999999999999999999999999999999998
Q ss_pred CCCc
Q psy8436 299 FPQS 302 (306)
Q Consensus 299 ~~~~ 302 (306)
.+..
T Consensus 129 GdeV 132 (505)
T KOG3549|consen 129 GDEV 132 (505)
T ss_pred CCEE
Confidence 7654
No 28
>KOG3571|consensus
Probab=99.17 E-value=9.9e-11 Score=105.28 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=78.6
Q ss_pred ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC---
Q psy8436 4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--- 80 (306)
Q Consensus 4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--- 80 (306)
.|.+|.|.-+.-.-|||+|+|..+...+.||||.+|.++|+.+.+||+.+||.||.||.++.++++..+||.+||.+
T Consensus 249 nIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~ 328 (626)
T KOG3571|consen 249 NIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSR 328 (626)
T ss_pred eEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhcc
Confidence 56788888876667999999975555556899999999999999999999999999999999999999999999986
Q ss_pred CCeEEEEEEeCCC
Q psy8436 81 DSHVEIVICRNPD 93 (306)
Q Consensus 81 ~~~v~L~v~r~~~ 93 (306)
...++|+|+...+
T Consensus 329 ~gPi~ltvAk~~D 341 (626)
T KOG3571|consen 329 PGPIKLTVAKCWD 341 (626)
T ss_pred CCCeEEEEeeccC
Confidence 5569999987544
No 29
>KOG3571|consensus
Probab=99.16 E-value=8.7e-11 Score=105.62 Aligned_cols=81 Identities=32% Similarity=0.595 Sum_probs=68.2
Q ss_pred ccceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297 (306)
Q Consensus 218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~ 297 (306)
...+.+|.|.-+. ..-|||+|+|-... .|+.||||.+|.++|+.|.+|+|.+||.||+||.+++++++..|||..||.
T Consensus 247 slnIITV~LnMe~-vnfLGiSivgqsn~-rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLRE 324 (626)
T KOG3571|consen 247 SLNIITVTLNMET-VNFLGISIVGQSNA-RGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLRE 324 (626)
T ss_pred ceeEEEEEecccc-cccceeEeecccCc-CCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHH
Confidence 3567788886654 24599999984443 235799999999999999999999999999999999999999999999998
Q ss_pred cCC
Q psy8436 298 IFP 300 (306)
Q Consensus 298 ~~~ 300 (306)
+-.
T Consensus 325 aV~ 327 (626)
T KOG3571|consen 325 AVS 327 (626)
T ss_pred Hhc
Confidence 543
No 30
>KOG1892|consensus
Probab=99.14 E-value=1.1e-10 Score=111.60 Aligned_cols=79 Identities=27% Similarity=0.530 Sum_probs=69.3
Q ss_pred cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436 219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298 (306)
Q Consensus 219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~ 298 (306)
.++.+|+|+|. +|+|++|+..+..-....||||+.|.+||+|+.+|+|..||++|.|||+++.|++.+.|..++...
T Consensus 932 pei~~vtL~Kn---nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrt 1008 (1629)
T KOG1892|consen 932 PEIITVTLKKN---NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRT 1008 (1629)
T ss_pred CceEEEEEecc---CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhcc
Confidence 56889999998 469999976555433358999999999999999999999999999999999999999999999876
Q ss_pred CC
Q psy8436 299 FP 300 (306)
Q Consensus 299 ~~ 300 (306)
.+
T Consensus 1009 g~ 1010 (1629)
T KOG1892|consen 1009 GN 1010 (1629)
T ss_pred CC
Confidence 54
No 31
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.10 E-value=9e-10 Score=78.78 Aligned_cols=70 Identities=20% Similarity=0.517 Sum_probs=60.8
Q ss_pred CceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEEEEEeC
Q psy8436 16 NELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHVEIVICRN 91 (306)
Q Consensus 16 ~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L~v~r~ 91 (306)
.+|||.+.-.. .+++|..|.+++||+++| |++||+|++|||..+.++++.++..+++.. +..+.|++.|.
T Consensus 2 ~~lG~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYDD-----GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEcC-----CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 47899986432 469999999999999998 999999999999999999889999988764 67899999886
No 32
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.07 E-value=2.5e-09 Score=76.23 Aligned_cols=77 Identities=36% Similarity=0.576 Sum_probs=62.9
Q ss_pred EEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ 301 (306)
Q Consensus 222 ~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~ 301 (306)
..+.+.+.. ..|||.+....... .+++|..|.++++|+++| |++||+|++|||+.+.++++.++..+++..+.
T Consensus 3 ~~~~~~~~~--~~~G~~~~~~~~~~---~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~- 75 (85)
T smart00228 3 RLVELEKGG--GGLGFSLVGGKDEG---GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGG- 75 (85)
T ss_pred EEEEEEECC--CcccEEEECCCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-
Confidence 356777774 67999997654321 489999999999999999 99999999999999999999999999988643
Q ss_pred ceec
Q psy8436 302 SSKL 305 (306)
Q Consensus 302 ~~~l 305 (306)
.+.|
T Consensus 76 ~~~l 79 (85)
T smart00228 76 KVTL 79 (85)
T ss_pred eEEE
Confidence 4443
No 33
>KOG3651|consensus
Probab=99.05 E-value=8.4e-10 Score=93.44 Aligned_cols=84 Identities=25% Similarity=0.316 Sum_probs=75.6
Q ss_pred EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEE
Q psy8436 6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVE 85 (306)
Q Consensus 6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~ 85 (306)
.+|.|+|+..+-+||+|.||...- +.+||..|..++||+++|+++-||.|++|||+++.+.+-.++..+++.+-+.|.
T Consensus 6 ~~v~ltKD~~nliGISIGGGapyC--PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~ 83 (429)
T KOG3651|consen 6 ETVELTKDEKNLIGISIGGGAPYC--PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVK 83 (429)
T ss_pred CcEEEeeccccceeEEecCCCCcC--CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceE
Confidence 468999999888999999885432 679999999999999999999999999999999999999999999999988898
Q ss_pred EEEEeC
Q psy8436 86 IVICRN 91 (306)
Q Consensus 86 L~v~r~ 91 (306)
+.+-.-
T Consensus 84 IhyNKL 89 (429)
T KOG3651|consen 84 IHYNKL 89 (429)
T ss_pred EEehhc
Confidence 887543
No 34
>KOG3552|consensus
Probab=99.00 E-value=3.5e-10 Score=108.07 Aligned_cols=80 Identities=19% Similarity=0.407 Sum_probs=70.4
Q ss_pred ccccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436 2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD 81 (306)
Q Consensus 2 ~~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~ 81 (306)
+.+.|.|++.|+.. |||.++.| ..++|..|++|||+ .|.|++||+||+|||.++..++++.+++++|.|.
T Consensus 53 ~~~pr~vq~~r~~~--lGFgfvag------rPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace 122 (1298)
T KOG3552|consen 53 RWEPRQVQLQRNAS--LGFGFVAG------RPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACE 122 (1298)
T ss_pred cCcchhhhhhcccc--ccceeecC------CceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHh
Confidence 44678899999765 55555544 46999999999999 6899999999999999999999999999999999
Q ss_pred CeEEEEEEeC
Q psy8436 82 SHVEIVICRN 91 (306)
Q Consensus 82 ~~v~L~v~r~ 91 (306)
..|.|+|++.
T Consensus 123 ~sv~ltV~qP 132 (1298)
T KOG3552|consen 123 SSVNLTVCQP 132 (1298)
T ss_pred hhcceEEecc
Confidence 9999999986
No 35
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.99 E-value=2.1e-09 Score=76.88 Aligned_cols=66 Identities=18% Similarity=0.432 Sum_probs=55.6
Q ss_pred CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL 305 (306)
Q Consensus 233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l 305 (306)
.+||+.+.-.. .+++|..|.++++|+++| |++||+|++|||+.+.++++.++..+++...+..+.|
T Consensus 2 ~~lG~~~~~~~------~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l 67 (85)
T cd00988 2 GGIGLELKYDD------GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRL 67 (85)
T ss_pred eEEEEEEEEcC------CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEE
Confidence 36888885422 479999999999999987 9999999999999999998899999998766555544
No 36
>KOG3606|consensus
Probab=98.96 E-value=1.9e-09 Score=89.89 Aligned_cols=86 Identities=23% Similarity=0.411 Sum_probs=72.2
Q ss_pred cEEEEEEeC-CCCceeEEEEecCC-------CCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436 5 FKVFRVVKD-DSNELGIYIERQDG-------GAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREA 76 (306)
Q Consensus 5 ~~~v~l~r~-~~~~lG~~i~gg~~-------~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~ 76 (306)
-|+|.|.|- ....|||.|+.|.. -..-+||||+.+.|||.|+-.|.|-+.|+||+|||+.|.+.+.+++.++
T Consensus 159 HRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDM 238 (358)
T KOG3606|consen 159 HRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDM 238 (358)
T ss_pred hhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHH
Confidence 366777775 44589999998721 1134699999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEEEe
Q psy8436 77 LNNKDSHVEIVICR 90 (306)
Q Consensus 77 l~~~~~~v~L~v~r 90 (306)
+-.....+.++|.-
T Consensus 239 MvANshNLIiTVkP 252 (358)
T KOG3606|consen 239 MVANSHNLIITVKP 252 (358)
T ss_pred HhhcccceEEEecc
Confidence 98887777777753
No 37
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.93 E-value=5.1e-09 Score=74.39 Aligned_cols=65 Identities=26% Similarity=0.451 Sum_probs=50.0
Q ss_pred cccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh-hcCCCceec
Q psy8436 234 SLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK-DIFPQSSKL 305 (306)
Q Consensus 234 ~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk-~~~~~~~~l 305 (306)
.||+.+....+. .|++|.+|.+++||+++| |++||+|++|||.++.+ ..+...+|. ..++..+.|
T Consensus 2 ~lGv~~~~~~~~----~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~~g~~v~l 67 (82)
T PF13180_consen 2 GLGVTVQNLSDT----GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNS--SEDLVNILSKGKPGDTVTL 67 (82)
T ss_dssp E-SEEEEECSCS----SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSS--HHHHHHHHHCSSTTSEEEE
T ss_pred EECeEEEEccCC----CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEE
Confidence 478888765542 589999999999999999 99999999999999954 578888884 445554443
No 38
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.91 E-value=1e-08 Score=72.21 Aligned_cols=59 Identities=17% Similarity=0.309 Sum_probs=51.9
Q ss_pred CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCCC
Q psy8436 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNPD 93 (306)
Q Consensus 32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~~ 93 (306)
.|++|..|.++|||+++| |+.||+|++|||..+. ++++...+|... +..+.|++.|...
T Consensus 10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g~ 70 (79)
T cd00991 10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPSTT 70 (79)
T ss_pred CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECCE
Confidence 589999999999999999 9999999999999999 567888888764 6789999998653
No 39
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.82 E-value=3.2e-08 Score=69.60 Aligned_cols=57 Identities=19% Similarity=0.493 Sum_probs=49.8
Q ss_pred CeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEEEEEeCC
Q psy8436 33 PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHVEIVICRNP 92 (306)
Q Consensus 33 gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L~v~r~~ 92 (306)
.++|..|.++++|++.| |+.||+|++|||..+. +++++..+|... +..+.|++.|..
T Consensus 13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~~ 70 (79)
T cd00989 13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERNG 70 (79)
T ss_pred CcEEEeECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEECC
Confidence 48899999999999999 9999999999999999 567888888765 568899998864
No 40
>KOG0609|consensus
Probab=98.81 E-value=1.7e-08 Score=92.24 Aligned_cols=86 Identities=27% Similarity=0.470 Sum_probs=78.1
Q ss_pred cccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436 3 KQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS 82 (306)
Q Consensus 3 ~~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~ 82 (306)
.-++.|.+.|+.+..||.++.-.... -+||..|..||.|++.|.|++||+|++|||+++.+....++..+|+.+.+
T Consensus 121 ~~vriv~i~k~~~eplG~Tik~~e~~----~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G 196 (542)
T KOG0609|consen 121 EAVRIVRIVKNTGEPLGATIRVEEDT----KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRG 196 (542)
T ss_pred ceeEEEEEeecCCCccceEEEeccCC----ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCC
Confidence 34789999998899999999976553 39999999999999999999999999999999999999999999999988
Q ss_pred eEEEEEEeCC
Q psy8436 83 HVEIVICRNP 92 (306)
Q Consensus 83 ~v~L~v~r~~ 92 (306)
.++++|.-..
T Consensus 197 ~itfkiiP~~ 206 (542)
T KOG0609|consen 197 SITFKIIPSY 206 (542)
T ss_pred cEEEEEcccc
Confidence 9999997553
No 41
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.80 E-value=3.3e-08 Score=69.73 Aligned_cols=67 Identities=21% Similarity=0.438 Sum_probs=51.7
Q ss_pred ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCC
Q psy8436 17 ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNP 92 (306)
Q Consensus 17 ~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~ 92 (306)
.||+.+.... .+++|..|.++|+|+++| |++||+|++|||..+.+ +.++...+ ..+..+.|++.|..
T Consensus 2 ~~G~~~~~~~-----~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g 68 (80)
T cd00990 2 YLGLTLDKEE-----GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDD 68 (80)
T ss_pred cccEEEEccC-----CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECC
Confidence 3677775321 369999999999999999 99999999999999985 44443333 24568899998864
No 42
>KOG3542|consensus
Probab=98.78 E-value=7.3e-09 Score=96.48 Aligned_cols=82 Identities=28% Similarity=0.485 Sum_probs=71.8
Q ss_pred ccceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh
Q psy8436 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297 (306)
Q Consensus 218 ~~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~ 297 (306)
....+.|.|.|..-...|-|.+.||.+.- .||||.+|.||+-|++.| |+.||+||+|||+++++++...|.++|++
T Consensus 533 KAK~RqviLtk~sre~pl~f~L~GGsEkG---fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrn 608 (1283)
T KOG3542|consen 533 KAKPRQVILTKASREDPLMFRLVGGSEKG---FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRN 608 (1283)
T ss_pred cccceeEEEecccccCCceeEeccCcccc---ceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcC
Confidence 45668899998655578999999999863 689999999999999999 99999999999999999999999999998
Q ss_pred cCCCce
Q psy8436 298 IFPQSS 303 (306)
Q Consensus 298 ~~~~~~ 303 (306)
.-.-.+
T Consensus 609 nthLtl 614 (1283)
T KOG3542|consen 609 NTHLTL 614 (1283)
T ss_pred CceEEE
Confidence 654433
No 43
>KOG3552|consensus
Probab=98.77 E-value=1e-08 Score=98.32 Aligned_cols=72 Identities=29% Similarity=0.547 Sum_probs=62.2
Q ss_pred ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF 299 (306)
Q Consensus 220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~ 299 (306)
.++.|.+++.. .|||.++.|. +++|..|.+|||+. |+|++|||||+|||.++.+.+++.+++++|.+.
T Consensus 55 ~pr~vq~~r~~---~lGFgfvagr-------PviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace 122 (1298)
T KOG3552|consen 55 EPRQVQLQRNA---SLGFGFVAGR-------PVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACE 122 (1298)
T ss_pred cchhhhhhccc---cccceeecCC-------ceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHh
Confidence 35678888874 5777777663 79999999999995 889999999999999999999999999999987
Q ss_pred CCce
Q psy8436 300 PQSS 303 (306)
Q Consensus 300 ~~~~ 303 (306)
.+..
T Consensus 123 ~sv~ 126 (1298)
T KOG3552|consen 123 SSVN 126 (1298)
T ss_pred hhcc
Confidence 6643
No 44
>KOG4371|consensus
Probab=98.72 E-value=5.1e-08 Score=94.74 Aligned_cols=169 Identities=26% Similarity=0.399 Sum_probs=122.4
Q ss_pred cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436 5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84 (306)
Q Consensus 5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v 84 (306)
+..|++.|.+ +.||..++..... +.|+...-.+.--+-. |++||.++.+||+-+++.-|.+|+.+++..++.|
T Consensus 1148 ~i~~~~~r~~-~~l~~~~a~~~~~-----~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~ 1220 (1332)
T KOG4371|consen 1148 VIDVELDRNE-GSLGVQIASLSGR-----VCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRV 1220 (1332)
T ss_pred cccccCCCCC-CCCCceeccCccc-----eehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCceE
Confidence 3456677765 6899998754332 5677766555555555 9999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCcccCcCCCCCCCCCCCCCCchhhhhcccccccccCCCCCCCChhhhhcCccceeeecccCccccccccc
Q psy8436 85 EIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSNEKSQTSNC 164 (306)
Q Consensus 85 ~L~v~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (306)
.|-|.|.+..+........ .
T Consensus 1221 ~~~~~r~~~~~~d~~~~s~-----------------------------------------------------------~- 1240 (1332)
T KOG4371|consen 1221 VLGVQRPPPAYSDQHHASS-----------------------------------------------------------T- 1240 (1332)
T ss_pred EEEeecCCcccccchhhhh-----------------------------------------------------------h-
Confidence 9999997654311000000 0
Q ss_pred ccccccccccccceecccCCCCCCcCccccCCCCCCCCCCCCCCCCcCCCCCCccceEEEEEEeCCCCCcccEEEEcCCC
Q psy8436 165 SKIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRD 244 (306)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~k~~~~~~lG~~l~gg~~ 244 (306)
+...-...+.+.+.+ ..++|+.+.-..-
T Consensus 1241 ---------------------------------------------------~~~~~l~~~~~~~~p-~~~~~~~~~~~~~ 1268 (1332)
T KOG4371|consen 1241 ---------------------------------------------------SASAPLISVMLLKKP-MATLGLSLAKRTM 1268 (1332)
T ss_pred ---------------------------------------------------cccchhhhheeeecc-cccccccccccCc
Confidence 000011224444444 3689998865444
Q ss_pred CCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436 245 SPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296 (306)
Q Consensus 245 ~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk 296 (306)
+ .|+||..+..+++|...|.+|+||++...+|+++.+.+-.+..+.++
T Consensus 1269 s----~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~ 1316 (1332)
T KOG4371|consen 1269 S----DGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLK 1316 (1332)
T ss_pred C----CceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhh
Confidence 3 58999999999999989999999999999999999988776666665
No 45
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.69 E-value=1e-07 Score=68.70 Aligned_cols=58 Identities=26% Similarity=0.522 Sum_probs=49.6
Q ss_pred CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCC
Q psy8436 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNP 92 (306)
Q Consensus 32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~ 92 (306)
.|++|..|.+++||+++| |+.||+|++|||+.+.+ ..+...++... +..+.|.+.|+.
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~--~~~~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKS--VADLRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence 479999999999999999 99999999999999985 45666666654 678999998865
No 46
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.68 E-value=1.5e-07 Score=66.30 Aligned_cols=58 Identities=17% Similarity=0.316 Sum_probs=49.4
Q ss_pred CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCCC
Q psy8436 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD 93 (306)
Q Consensus 32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~~ 93 (306)
.|++|..|.++|||+. | |+.||+|++|||..+. ++++...++.. .+..+.|++.|...
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g~ 67 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREEK 67 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 4799999999999986 7 9999999999999998 56778888874 36689999988654
No 47
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.67 E-value=1.4e-07 Score=86.64 Aligned_cols=79 Identities=24% Similarity=0.484 Sum_probs=63.8
Q ss_pred CCCceeEEEEecCC-CCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc-CCCeEEEEEEeC
Q psy8436 14 DSNELGIYIERQDG-GAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN-KDSHVEIVICRN 91 (306)
Q Consensus 14 ~~~~lG~~i~gg~~-~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~-~~~~v~L~v~r~ 91 (306)
...|+|+.+.-... ++...+++|..|.++|||+++| |+.||+|++|||+++.+++..++..+|+. .+..|.|+|.|.
T Consensus 83 ~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~ 161 (389)
T PLN00049 83 AVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRG 161 (389)
T ss_pred CceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEEC
Confidence 34578888864332 1112379999999999999999 99999999999999999998898888875 466899999886
Q ss_pred CC
Q psy8436 92 PD 93 (306)
Q Consensus 92 ~~ 93 (306)
..
T Consensus 162 g~ 163 (389)
T PLN00049 162 PE 163 (389)
T ss_pred CE
Confidence 53
No 48
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.65 E-value=1.6e-07 Score=84.73 Aligned_cols=73 Identities=25% Similarity=0.449 Sum_probs=61.5
Q ss_pred CCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc-CCCeEEEEEEeCCC
Q psy8436 15 SNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN-KDSHVEIVICRNPD 93 (306)
Q Consensus 15 ~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~-~~~~v~L~v~r~~~ 93 (306)
-.++|+.+.... .+++|..|.++|||+++| |+.||+|++|||+.+.+++..++..+++. .+..+.|+|.|...
T Consensus 50 ~~~lG~~~~~~~-----~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~ 123 (334)
T TIGR00225 50 LEGIGIQVGMDD-----GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK 123 (334)
T ss_pred eEEEEEEEEEEC-----CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence 346888886432 359999999999999999 99999999999999999887888888866 46789999998753
No 49
>KOG3542|consensus
Probab=98.62 E-value=6.3e-08 Score=90.40 Aligned_cols=88 Identities=18% Similarity=0.331 Sum_probs=76.2
Q ss_pred ccEEEEEEe-CCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436 4 QFKVFRVVK-DDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS 82 (306)
Q Consensus 4 ~~~~v~l~r-~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~ 82 (306)
..|.|.|+| .....|=|.+.||...+ -||||..|.||+-|+++| |+-||+||+|||++.++.+...|.++|+.. .
T Consensus 535 K~RqviLtk~sre~pl~f~L~GGsEkG--fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn-t 610 (1283)
T KOG3542|consen 535 KPRQVILTKASREDPLMFRLVGGSEKG--FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN-T 610 (1283)
T ss_pred cceeEEEecccccCCceeEeccCcccc--ceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC-c
Confidence 468899998 45568999999997654 689999999999999999 999999999999999999999999999987 5
Q ss_pred eEEEEEEeCCCCC
Q psy8436 83 HVEIVICRNPDDA 95 (306)
Q Consensus 83 ~v~L~v~r~~~~~ 95 (306)
.++|+|..+.-.+
T Consensus 611 hLtltvKtNvfvf 623 (1283)
T KOG3542|consen 611 HLTLTVKTNVFVF 623 (1283)
T ss_pred eEEEEEecceeeH
Confidence 6788887654433
No 50
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.61 E-value=1.9e-07 Score=85.88 Aligned_cols=73 Identities=23% Similarity=0.407 Sum_probs=65.0
Q ss_pred CCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEEEEEeC
Q psy8436 14 DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHVEIVICRN 91 (306)
Q Consensus 14 ~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L~v~r~ 91 (306)
.-+|+|+.+.-... .++.|.++.+++||+++| |++||+|++|||.++.+++..+|+..++.. |..|+|++.|.
T Consensus 98 ~~~GiG~~i~~~~~----~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 98 EFGGIGIELQMEDI----GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred cccceeEEEEEecC----CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 44688898886553 359999999999999999 999999999999999999999999999987 66899999996
No 51
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.60 E-value=1.6e-07 Score=66.10 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=44.2
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC-CCcee
Q psy8436 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF-PQSSK 304 (306)
Q Consensus 250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~-~~~~~ 304 (306)
.|++|..|.++++|+++| |++||+|++|||.++.+ ++++..+|.... +..+.
T Consensus 10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~--~~d~~~~l~~~~~g~~v~ 62 (79)
T cd00991 10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT--LEDFMEALKPTKPGEVIT 62 (79)
T ss_pred CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC--HHHHHHHHhcCCCCCEEE
Confidence 589999999999999988 99999999999999985 578888888753 44443
No 52
>KOG3605|consensus
Probab=98.59 E-value=4.7e-08 Score=90.81 Aligned_cols=81 Identities=28% Similarity=0.414 Sum_probs=68.7
Q ss_pred ceEEEEEEeCCCCCcccEEEEc-CCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436 220 SMFTVTFQKGPGQKSLGFSIVG-GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298 (306)
Q Consensus 220 ~~~~v~l~k~~~~~~lG~~l~g-g~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~ 298 (306)
.++.|.+.|.+| +.||+-|+. |..+-+ --++|..+..+|||+++|+|-.||||++|||.++.|++..-...+||+.
T Consensus 645 ~qKEVvv~K~kG-EiLGVViVESGWGSmL--PTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~ 721 (829)
T KOG3605|consen 645 NQKEVVLEKHKG-EILGVVIVESGWGSIL--PTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGL 721 (829)
T ss_pred ccceeeeecccC-ceeeEEEEecCccccc--hHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcc
Confidence 357888888887 789998853 554432 1367899999999999999999999999999999999999999999999
Q ss_pred CCCce
Q psy8436 299 FPQSS 303 (306)
Q Consensus 299 ~~~~~ 303 (306)
++++.
T Consensus 722 KnQT~ 726 (829)
T KOG3605|consen 722 KNQTA 726 (829)
T ss_pred cccce
Confidence 98864
No 53
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.57 E-value=2.6e-07 Score=64.87 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=43.6
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCcee
Q psy8436 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSK 304 (306)
Q Consensus 250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~ 304 (306)
.+++|..|.++++|++.| |++||+|++|||.++.+ ++++..+|+...+..+.
T Consensus 12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~~~~~~~ 63 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLT 63 (79)
T ss_pred cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHCCCceEE
Confidence 368999999999999988 99999999999999975 57888888876544443
No 54
>KOG0609|consensus
Probab=98.55 E-value=2.3e-07 Score=85.04 Aligned_cols=79 Identities=28% Similarity=0.424 Sum_probs=68.3
Q ss_pred ceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF 299 (306)
Q Consensus 220 ~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~ 299 (306)
..+.|.+.|.-+ ..||.++.-..+ ..+||.+|..||.|++.|.|++||.|++|||+++.+....++..+|+++.
T Consensus 122 ~vriv~i~k~~~-eplG~Tik~~e~-----~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~ 195 (542)
T KOG0609|consen 122 AVRIVRIVKNTG-EPLGATIRVEED-----TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR 195 (542)
T ss_pred eeEEEEEeecCC-CccceEEEeccC-----CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC
Confidence 356788888854 789999976553 25899999999999999999999999999999999999999999999988
Q ss_pred CCceec
Q psy8436 300 PQSSKL 305 (306)
Q Consensus 300 ~~~~~l 305 (306)
+++++
T Consensus 196 -G~itf 200 (542)
T KOG0609|consen 196 -GSITF 200 (542)
T ss_pred -CcEEE
Confidence 55543
No 55
>KOG3606|consensus
Probab=98.55 E-value=1.3e-07 Score=79.21 Aligned_cols=77 Identities=29% Similarity=0.438 Sum_probs=64.9
Q ss_pred EEEEEEeCCCCCcccEEEEcCCCCCC---C---CCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy8436 222 FTVTFQKGPGQKSLGFSIVGGRDSPK---G---NLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF 295 (306)
Q Consensus 222 ~~v~l~k~~~~~~lG~~l~gg~~~~~---~---~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~L 295 (306)
+.|.|.|-.....|||.|+.|..... | --||||+++.|||.|+..|-|-+.|++|||||+.|.|.|..|+..++
T Consensus 160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMM 239 (358)
T KOG3606|consen 160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMM 239 (358)
T ss_pred hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHH
Confidence 46777776666789999987765321 1 35899999999999999999999999999999999999999999987
Q ss_pred hhc
Q psy8436 296 KDI 298 (306)
Q Consensus 296 k~~ 298 (306)
-..
T Consensus 240 vAN 242 (358)
T KOG3606|consen 240 VAN 242 (358)
T ss_pred hhc
Confidence 544
No 56
>KOG3651|consensus
Probab=98.54 E-value=3.2e-07 Score=78.04 Aligned_cols=74 Identities=31% Similarity=0.529 Sum_probs=63.4
Q ss_pred EEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP 300 (306)
Q Consensus 223 ~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~ 300 (306)
+|+|.|.. .+-+|++|-||...- -=+||-+|..+.||+++|+|+-||.|++|||+++.|.+..++..+|+-+.+
T Consensus 7 ~v~ltKD~-~nliGISIGGGapyC---PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~ 80 (429)
T KOG3651|consen 7 TVELTKDE-KNLIGISIGGGAPYC---PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLN 80 (429)
T ss_pred cEEEeecc-ccceeEEecCCCCcC---CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhcc
Confidence 68898885 356799997776531 248999999999999999999999999999999999999999999987654
No 57
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.53 E-value=3.6e-07 Score=64.34 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=37.7
Q ss_pred ccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCC
Q psy8436 235 LGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285 (306)
Q Consensus 235 lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~ 285 (306)
||+.+.... .+++|..|.++++|+++| |++||+|++|||..+.+
T Consensus 3 ~G~~~~~~~------~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~ 46 (80)
T cd00990 3 LGLTLDKEE------GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA 46 (80)
T ss_pred ccEEEEccC------CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH
Confidence 677774321 479999999999999998 99999999999999876
No 58
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.52 E-value=3.7e-07 Score=88.34 Aligned_cols=71 Identities=18% Similarity=0.387 Sum_probs=59.2
Q ss_pred CceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECC-----EeCCCCCHHHHHHHHhcC-CCeEEEEEE
Q psy8436 16 NELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVND-----KRLKGLTIQEAREALNNK-DSHVEIVIC 89 (306)
Q Consensus 16 ~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG-----~~l~~~~~~~a~~~l~~~-~~~v~L~v~ 89 (306)
.|+|+.+.... .+++|..|.|||||++++.|++||+|++||| .++.+++.++++.+|+.. |..|+|+|.
T Consensus 244 ~GIGa~l~~~~-----~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~ 318 (667)
T PRK11186 244 EGIGAVLQMDD-----DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEIL 318 (667)
T ss_pred eEEEEEEEEeC-----CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEE
Confidence 47788876432 2589999999999999844999999999994 467789999999999976 668999998
Q ss_pred eC
Q psy8436 90 RN 91 (306)
Q Consensus 90 r~ 91 (306)
|.
T Consensus 319 r~ 320 (667)
T PRK11186 319 PA 320 (667)
T ss_pred eC
Confidence 84
No 59
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.49 E-value=4.9e-07 Score=83.06 Aligned_cols=72 Identities=26% Similarity=0.287 Sum_probs=56.4
Q ss_pred CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL 305 (306)
Q Consensus 233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l 305 (306)
.++|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+++..++..+|+...+..+.|
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~l 156 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVEL 156 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEE
Confidence 56888875322210001379999999999999999 9999999999999999999999999998766666554
No 60
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.46 E-value=3.8e-07 Score=83.83 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=61.6
Q ss_pred CCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceecC
Q psy8436 232 QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKLS 306 (306)
Q Consensus 232 ~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l~ 306 (306)
.+++|+.+....+ .+++|.++.+++||+++| |++||+|+.|||.++.+++..+|+..|+..++..++|+
T Consensus 99 ~~GiG~~i~~~~~-----~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~ 167 (406)
T COG0793 99 FGGIGIELQMEDI-----GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLT 167 (406)
T ss_pred ccceeEEEEEecC-----CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEE
Confidence 3678998876553 378999999999999999 99999999999999999999999999999998888773
No 61
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.45 E-value=1.2e-06 Score=75.71 Aligned_cols=72 Identities=14% Similarity=0.235 Sum_probs=57.7
Q ss_pred ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCCC
Q psy8436 17 ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNPD 93 (306)
Q Consensus 17 ~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~~ 93 (306)
.+|+...-... ...|+.|..+.++++|++.| |+.||+|++|||+++. +.+++.+++... ++.+.|+|.|+..
T Consensus 178 ~lgi~p~~~~g--~~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G~ 251 (259)
T TIGR01713 178 YIRLSPVMKND--KLEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDGQ 251 (259)
T ss_pred eEeEEEEEeCC--ceeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECCE
Confidence 46666643322 23689999999999999999 9999999999999999 456777777663 4689999999764
No 62
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.44 E-value=4.7e-07 Score=81.66 Aligned_cols=66 Identities=21% Similarity=0.360 Sum_probs=55.2
Q ss_pred CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL 305 (306)
Q Consensus 233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l 305 (306)
.++|+.+.... .+++|..|.+++||+++| |++||+|++|||.++.+++..++..+|+...+..+.|
T Consensus 51 ~~lG~~~~~~~------~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l 116 (334)
T TIGR00225 51 EGIGIQVGMDD------GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSL 116 (334)
T ss_pred EEEEEEEEEEC------CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEE
Confidence 46888886422 379999999999999999 9999999999999999998888888887766665544
No 63
>KOG3938|consensus
Probab=98.33 E-value=1e-06 Score=73.69 Aligned_cols=82 Identities=24% Similarity=0.357 Sum_probs=69.7
Q ss_pred EEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCe
Q psy8436 6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSH 83 (306)
Q Consensus 6 ~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~ 83 (306)
+.|.+.|. ...||++|+.+..+. .||+.|.++|.-++--.+++||.|-+|||.++.++.|-++..+|+.. +..
T Consensus 128 kEv~v~Ks-edalGlTITDNG~Gy----AFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ 202 (334)
T KOG3938|consen 128 KEVEVVKS-EDALGLTITDNGAGY----AFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGET 202 (334)
T ss_pred eeEEEEec-ccccceEEeeCCcce----eeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCe
Confidence 56778885 459999999664443 89999999999999999999999999999999999999999999987 556
Q ss_pred EEEEEEeCC
Q psy8436 84 VEIVICRNP 92 (306)
Q Consensus 84 v~L~v~r~~ 92 (306)
.+|.+..++
T Consensus 203 ftlrLiePk 211 (334)
T KOG3938|consen 203 FTLRLIEPK 211 (334)
T ss_pred eEEEeeccc
Confidence 777666543
No 64
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.33 E-value=2.3e-06 Score=60.14 Aligned_cols=51 Identities=29% Similarity=0.527 Sum_probs=41.9
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc-CCCcee
Q psy8436 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI-FPQSSK 304 (306)
Q Consensus 250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~-~~~~~~ 304 (306)
.|++|..|.++++|+. | |++||+|++|||..+.+ +++...+|+.. ++..+.
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~ 59 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVK 59 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEE
Confidence 4899999999999986 7 99999999999999975 57888888763 444443
No 65
>PRK10942 serine endoprotease; Provisional
Probab=98.31 E-value=3.2e-06 Score=79.50 Aligned_cols=59 Identities=27% Similarity=0.460 Sum_probs=53.3
Q ss_pred CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Q psy8436 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD 93 (306)
Q Consensus 32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~ 93 (306)
.|++|..|.++|+|+++| |++||+|++|||+.+. +.++..++++..+..+.|+|.|...
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~--s~~dl~~~l~~~~~~v~l~V~R~g~ 466 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVK--NIAELRKILDSKPSVLALNIQRGDS 466 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCE
Confidence 479999999999999999 9999999999999999 5688888998877789999998754
No 66
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.31 E-value=1.2e-06 Score=84.75 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=55.8
Q ss_pred CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECC-----EeCCCCCHHHHHHHHhhcCCCceec
Q psy8436 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING-----VPLENKTHAEAIAMFKDIFPQSSKL 305 (306)
Q Consensus 233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG-----~~v~~~~~~eav~~Lk~~~~~~~~l 305 (306)
.|+|+.+.-.. .+++|..|.+||||+++++|++||+|++||+ +++.+++..+++.+|+.-.+..+.|
T Consensus 244 ~GIGa~l~~~~------~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~L 315 (667)
T PRK11186 244 EGIGAVLQMDD------DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRL 315 (667)
T ss_pred eEEEEEEEEeC------CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEE
Confidence 56788875422 3689999999999999855999999999994 4677899999999999888877766
No 67
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.31 E-value=2.1e-06 Score=61.71 Aligned_cols=52 Identities=25% Similarity=0.430 Sum_probs=42.8
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC-CCcee
Q psy8436 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF-PQSSK 304 (306)
Q Consensus 250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~-~~~~~ 304 (306)
.|++|..|.++++|+++| |++||+|++|||+.+.++ .++..+++... +..+.
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~ 76 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVT 76 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEE
Confidence 489999999999999988 999999999999999764 57777776653 34433
No 68
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=98.28 E-value=1.9e-05 Score=61.39 Aligned_cols=86 Identities=13% Similarity=0.219 Sum_probs=57.7
Q ss_pred cccEEEEEEeC----CCCceeEEEEecCCC-CcCCCeEEEEeCCCChhcccCCCCC-CCEEEEECCEeCCCCCHHHHHHH
Q psy8436 3 KQFKVFRVVKD----DSNELGIYIERQDGG-AHFSPYLISHIEPGGAIHRDGRFHV-GDELIKVNDKRLKGLTIQEAREA 76 (306)
Q Consensus 3 ~~~~~v~l~r~----~~~~lG~~i~gg~~~-~~~~gi~V~~V~~gs~A~~~G~L~~-GD~Il~VNG~~l~~~~~~~a~~~ 76 (306)
.++|.|.+... ..+-||++|.-.... ....++-|-+|.|+|||+++| |++ .|-|+.+++..+.+. ++...+
T Consensus 9 ~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~~ 85 (138)
T PF04495_consen 9 QTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFEL 85 (138)
T ss_dssp SSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--ST--CHHHHH
T ss_pred CeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCH--HHHHHH
Confidence 35677777552 246889999877443 334678899999999999999 998 699999999999854 466666
Q ss_pred HhcC-CCeEEEEEEeC
Q psy8436 77 LNNK-DSHVEIVICRN 91 (306)
Q Consensus 77 l~~~-~~~v~L~v~r~ 91 (306)
+++. +..+.|.|...
T Consensus 86 v~~~~~~~l~L~Vyns 101 (138)
T PF04495_consen 86 VEANENKPLQLYVYNS 101 (138)
T ss_dssp HHHTTTS-EEEEEEET
T ss_pred HHHcCCCcEEEEEEEC
Confidence 6665 56789998753
No 69
>PRK10139 serine endoprotease; Provisional
Probab=98.28 E-value=2.7e-06 Score=79.60 Aligned_cols=59 Identities=25% Similarity=0.418 Sum_probs=53.0
Q ss_pred CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Q psy8436 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD 93 (306)
Q Consensus 32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~ 93 (306)
.|++|..|.++|||+++| |+.||+|++|||+.+. ++++...+++..+..+.|+|.|+..
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~g~ 448 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGNE 448 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECCE
Confidence 479999999999999999 9999999999999998 5788888888776789999998764
No 70
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.25 E-value=3.3e-06 Score=78.83 Aligned_cols=59 Identities=22% Similarity=0.473 Sum_probs=52.5
Q ss_pred CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCCC
Q psy8436 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNPD 93 (306)
Q Consensus 32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~~ 93 (306)
.|++|..|.++|||+++| |++||+|++|||+.+. +.++..++++.. ++.+.|+|.|...
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~ 422 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGA 422 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 589999999999999999 9999999999999998 567888888763 6789999999754
No 71
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.20 E-value=5e-06 Score=75.45 Aligned_cols=59 Identities=22% Similarity=0.392 Sum_probs=51.1
Q ss_pred CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCCC
Q psy8436 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD 93 (306)
Q Consensus 32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~~ 93 (306)
.|++|..|.++|||+++| |+.||+|++|||+.+. ++++..+.++. .++.+.|+|.|+..
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g~ 338 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQGK 338 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 489999999999999999 9999999999999998 45677677764 47789999998753
No 72
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.18 E-value=5.5e-06 Score=76.95 Aligned_cols=60 Identities=18% Similarity=0.397 Sum_probs=52.1
Q ss_pred CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEEEEEeCCCC
Q psy8436 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHVEIVICRNPDD 94 (306)
Q Consensus 32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L~v~r~~~~ 94 (306)
.+++|..|.++|||+++| |++||+|++|||+++. ++++....++.. ++.+.|+|.|+...
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~~ 263 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLR--SWTDFVSAVKENPGKSMDIKVERNGET 263 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCceEEEEEECCEE
Confidence 368999999999999999 9999999999999998 568888888764 55789999987643
No 73
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.18 E-value=7.4e-06 Score=74.81 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=41.5
Q ss_pred EEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEE
Q psy8436 36 ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVIC 89 (306)
Q Consensus 36 V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~ 89 (306)
|..|.|+|+|+++| |++||+|++|||+.+. ++.+....+. +..+.|+|.
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~--Dw~D~~~~l~--~e~l~L~V~ 50 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPR--DLIDYQFLCA--DEELELEVL 50 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHhc--CCcEEEEEE
Confidence 67899999999999 9999999999999998 5667766664 356888886
No 74
>PRK10898 serine endoprotease; Provisional
Probab=98.18 E-value=6.8e-06 Score=74.55 Aligned_cols=59 Identities=22% Similarity=0.429 Sum_probs=49.8
Q ss_pred CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc--CCCeEEEEEEeCCC
Q psy8436 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD 93 (306)
Q Consensus 32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~--~~~~v~L~v~r~~~ 93 (306)
.|++|..|.++|||+++| |+.||+|++|||+.+.+ +.+....+.. .++.+.|+|.|...
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~~l~~~l~~~~~g~~v~l~v~R~g~ 339 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDK 339 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 689999999999999999 99999999999999984 4555555544 46789999998754
No 75
>KOG3834|consensus
Probab=98.12 E-value=4.4e-05 Score=68.44 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=50.1
Q ss_pred CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeC
Q psy8436 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRN 91 (306)
Q Consensus 32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~ 91 (306)
.|.-|-+|.++++|+++|..--=|-|++|||.-|.. ..+...++|+..-+.|+|+|...
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sekVkltv~n~ 73 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEKVKLTVYNS 73 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccceEEEEEec
Confidence 468888999999999999777789999999999975 45777788888877799999754
No 76
>KOG4407|consensus
Probab=98.10 E-value=4.2e-06 Score=83.36 Aligned_cols=51 Identities=24% Similarity=0.423 Sum_probs=47.0
Q ss_pred cEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCc
Q psy8436 251 GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQS 302 (306)
Q Consensus 251 gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~ 302 (306)
-|||++|.++|+|+.+- |+-||+++.||..++.++...+++.++++.+...
T Consensus 144 T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~ 194 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVL 194 (1973)
T ss_pred hhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCC
Confidence 47899999999999986 9999999999999999999999999999987654
No 77
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.07 E-value=1.3e-05 Score=75.24 Aligned_cols=58 Identities=19% Similarity=0.392 Sum_probs=50.7
Q ss_pred CeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEEEEEeCCC
Q psy8436 33 PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHVEIVICRNPD 93 (306)
Q Consensus 33 gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L~v~r~~~ 93 (306)
+.+|..|.++|||+++| |++||+|++|||+.+. ++++....++.. ++.+.|+|.|+..
T Consensus 222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g~ 280 (449)
T PRK10779 222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLALEIERQGS 280 (449)
T ss_pred CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEEEEEEECCE
Confidence 47899999999999999 9999999999999998 567787787764 5679999998764
No 78
>KOG3938|consensus
Probab=97.96 E-value=1.1e-05 Score=67.72 Aligned_cols=77 Identities=27% Similarity=0.295 Sum_probs=65.5
Q ss_pred cceEEEEEEeCCCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436 219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298 (306)
Q Consensus 219 ~~~~~v~l~k~~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~ 298 (306)
....+|.+.|.. ..||++|+..- ..-.||+.|.++|.-++--.+++||.|-+|||+++.|+-|-|+..+||+.
T Consensus 125 Gq~kEv~v~Kse--dalGlTITDNG-----~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel 197 (334)
T KOG3938|consen 125 GQAKEVEVVKSE--DALGLTITDNG-----AGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKEL 197 (334)
T ss_pred CcceeEEEEecc--cccceEEeeCC-----cceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhc
Confidence 455688888884 67999996421 12379999999999998878999999999999999999999999999999
Q ss_pred CCCc
Q psy8436 299 FPQS 302 (306)
Q Consensus 299 ~~~~ 302 (306)
+.+.
T Consensus 198 ~rge 201 (334)
T KOG3938|consen 198 PRGE 201 (334)
T ss_pred ccCC
Confidence 8765
No 79
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.93 E-value=6.1e-05 Score=68.42 Aligned_cols=70 Identities=16% Similarity=0.394 Sum_probs=55.5
Q ss_pred CCCceeEEEEecCCCCcCCCeEEEEeC--------CCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeE
Q psy8436 14 DSNELGIYIERQDGGAHFSPYLISHIE--------PGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHV 84 (306)
Q Consensus 14 ~~~~lG~~i~gg~~~~~~~gi~V~~V~--------~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v 84 (306)
.+..+|+.+.. .|++|.... .++||+++| |++||.|++|||+.+. +++++.++++.. +..+
T Consensus 94 gG~~iGI~l~t-------~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~--s~~DL~~iL~~~~g~~V 163 (402)
T TIGR02860 94 GGQSIGVKLNT-------KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIK--NMDDLANLINKAGGEKL 163 (402)
T ss_pred CCEEEEEEEec-------CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCeE
Confidence 45677777752 578875542 268999999 9999999999999998 567888888876 5679
Q ss_pred EEEEEeCCC
Q psy8436 85 EIVICRNPD 93 (306)
Q Consensus 85 ~L~v~r~~~ 93 (306)
.|+|.|+..
T Consensus 164 ~LtV~R~Ge 172 (402)
T TIGR02860 164 TLTIERGGK 172 (402)
T ss_pred EEEEEECCE
Confidence 999998764
No 80
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.91 E-value=3.1e-05 Score=66.98 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=43.0
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ 301 (306)
Q Consensus 250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~ 301 (306)
.|+.|..+.++++|++.| |++||.|++|||.++.++ +++.+++.+...+
T Consensus 191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~ 239 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP--EQAFQALQMLREE 239 (259)
T ss_pred eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCC
Confidence 589999999999999999 999999999999999764 6888888876543
No 81
>KOG1421|consensus
Probab=97.83 E-value=0.00038 Score=65.99 Aligned_cols=56 Identities=21% Similarity=0.430 Sum_probs=48.6
Q ss_pred eEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEEEEEeCCC
Q psy8436 34 YLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHVEIVICRNPD 93 (306)
Q Consensus 34 i~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L~v~r~~~ 93 (306)
++|..|.++|||.+. |++||.+|+||+..+. +.+++.++|... +..+.|+|.|...
T Consensus 305 LvV~~vL~~gpa~k~--Le~GDillavN~t~l~--df~~l~~iLDegvgk~l~LtI~Rggq 361 (955)
T KOG1421|consen 305 LVVETVLPEGPAEKK--LEPGDILLAVNSTCLN--DFEALEQILDEGVGKNLELTIQRGGQ 361 (955)
T ss_pred EEEEEeccCCchhhc--cCCCcEEEEEcceehH--HHHHHHHHHhhccCceEEEEEEeCCE
Confidence 779999999999765 9999999999998887 567888888776 7789999999753
No 82
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.77 E-value=0.0002 Score=55.70 Aligned_cols=83 Identities=22% Similarity=0.197 Sum_probs=53.5
Q ss_pred ceEEEEEEeC---CCCCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCC-CCEEEEECCEeCCCCCHHHHHHHH
Q psy8436 220 SMFTVTFQKG---PGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLRE-GDEIIAINGVPLENKTHAEAIAMF 295 (306)
Q Consensus 220 ~~~~v~l~k~---~~~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~-GD~Il~VNG~~v~~~~~~eav~~L 295 (306)
..+.|.+.-. ++.+-||+++.-.........+.-|.+|.|+|||+++| |++ .|-|+.+++..+.+. ++..+++
T Consensus 10 ~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~~v 86 (138)
T PF04495_consen 10 TTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFELV 86 (138)
T ss_dssp SEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--ST--CHHHHHH
T ss_pred eEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCH--HHHHHHH
Confidence 3455655432 22467899985433332223578899999999999999 998 699999999998864 5888888
Q ss_pred hhcCCCceec
Q psy8436 296 KDIFPQSSKL 305 (306)
Q Consensus 296 k~~~~~~~~l 305 (306)
+..-++.+.|
T Consensus 87 ~~~~~~~l~L 96 (138)
T PF04495_consen 87 EANENKPLQL 96 (138)
T ss_dssp HHTTTS-EEE
T ss_pred HHcCCCcEEE
Confidence 8888887765
No 83
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.76 E-value=0.00022 Score=50.81 Aligned_cols=71 Identities=21% Similarity=0.358 Sum_probs=43.2
Q ss_pred ceeEEEEecCCCCcCCCeEEEEeCCC--------ChhcccC-CCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEE
Q psy8436 17 ELGIYIERQDGGAHFSPYLISHIEPG--------GAIHRDG-RFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIV 87 (306)
Q Consensus 17 ~lG~~i~gg~~~~~~~gi~V~~V~~g--------s~A~~~G-~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~ 87 (306)
-||..+.-.. .+..|.+|.+| ||-.+.| .+++||.|++|||+.|..- ..-...+..+++.+|.|+
T Consensus 2 ~LGAd~~~~~-----~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~-~~~~~lL~~~agk~V~Lt 75 (88)
T PF14685_consen 2 LLGADFSYDN-----GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD-ANPYRLLEGKAGKQVLLT 75 (88)
T ss_dssp B-SEEEEEET-----TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT-B-HHHHHHTTTTSEEEEE
T ss_pred ccceEEEEcC-----CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC-CCHHHHhcccCCCEEEEE
Confidence 3565555442 35889999987 5666666 2569999999999999853 233344455568899999
Q ss_pred EEeCCC
Q psy8436 88 ICRNPD 93 (306)
Q Consensus 88 v~r~~~ 93 (306)
|.+...
T Consensus 76 v~~~~~ 81 (88)
T PF14685_consen 76 VNRKPG 81 (88)
T ss_dssp EE-STT
T ss_pred EecCCC
Confidence 988653
No 84
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.71 E-value=6.8e-05 Score=68.07 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=43.1
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc-CCCcee
Q psy8436 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI-FPQSSK 304 (306)
Q Consensus 250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~-~~~~~~ 304 (306)
.|++|..|.+++||+++| |++||+|++|||+++.+ +++....|++. ++..+.
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~ 330 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVM 330 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEE
Confidence 489999999999999998 99999999999999976 46777777763 444443
No 85
>PRK10898 serine endoprotease; Provisional
Probab=97.69 E-value=9.3e-05 Score=67.20 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=42.1
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhh-cCCCcee
Q psy8436 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD-IFPQSSK 304 (306)
Q Consensus 250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~-~~~~~~~ 304 (306)
.|++|.+|.+++||+++| |++||+|++|||+++.++ ++....|.. .++..+.
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~ 331 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIP 331 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEE
Confidence 589999999999999998 999999999999999764 566666655 3444343
No 86
>KOG0606|consensus
Probab=97.62 E-value=0.00014 Score=72.46 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=66.5
Q ss_pred EEEEEeCCCCceeEEEEecCC--CC---cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436 7 VFRVVKDDSNELGIYIERQDG--GA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD 81 (306)
Q Consensus 7 ~v~l~r~~~~~lG~~i~gg~~--~~---~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~ 81 (306)
.+.+.+ .+.+|||++..-.. +. ..--..|..|.+++||..+| |+.||.|+.|||..+.++.|.+++++|-+.+
T Consensus 629 pI~i~~-~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~g 706 (1205)
T KOG0606|consen 629 PITIHF-SGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSG 706 (1205)
T ss_pred ceeeec-cccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcC
Confidence 467777 56799998865422 11 11136689999999999999 9999999999999999999999999999888
Q ss_pred CeEEEEEEe
Q psy8436 82 SHVEIVICR 90 (306)
Q Consensus 82 ~~v~L~v~r 90 (306)
+.|.+.+.-
T Consensus 707 n~v~~~ttp 715 (1205)
T KOG0606|consen 707 NKVTLRTTP 715 (1205)
T ss_pred CeeEEEeec
Confidence 888877654
No 87
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=97.56 E-value=0.00063 Score=59.03 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=49.8
Q ss_pred CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCC
Q psy8436 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNP 92 (306)
Q Consensus 32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~ 92 (306)
.|+|+..+..+++| .|.|+.||.|++|||+.+. +.++....++.. |+.|++.+.|..
T Consensus 130 ~gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~~ 188 (342)
T COG3480 130 AGVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERHN 188 (342)
T ss_pred eeEEEEEccCCcch--hceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEecc
Confidence 38999999999999 6889999999999999999 567888887764 889999999754
No 88
>KOG3129|consensus
Probab=97.56 E-value=0.00026 Score=57.58 Aligned_cols=60 Identities=20% Similarity=0.439 Sum_probs=46.6
Q ss_pred eEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCC-HHHHHHHHhcC-CCeEEEEEEeCCCC
Q psy8436 34 YLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT-IQEAREALNNK-DSHVEIVICRNPDD 94 (306)
Q Consensus 34 i~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~-~~~a~~~l~~~-~~~v~L~v~r~~~~ 94 (306)
++|..|.|+|||+++| |++||.|+++..+.-.+.. ........+.. +..+.++|.|....
T Consensus 141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~ 202 (231)
T KOG3129|consen 141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK 202 (231)
T ss_pred EEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence 7899999999999999 9999999999877666554 44444444444 55789999887644
No 89
>KOG1738|consensus
Probab=97.46 E-value=0.00018 Score=67.53 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=65.0
Q ss_pred CCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEe
Q psy8436 14 DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90 (306)
Q Consensus 14 ~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r 90 (306)
++.|+|+.|-..-+| ..+|+.+.+++||+.++.+..||+|+.||++-+.+|.+..++.-|+.....|.++|..
T Consensus 211 p~eglg~~I~Ssydg----~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkK 283 (638)
T KOG1738|consen 211 PSEGLGLYIDSSYDG----PHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKK 283 (638)
T ss_pred cccCCceEEeeecCC----ceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeec
Confidence 778999999876655 3889999999999999999999999999999999999999999999987777776654
No 90
>KOG1421|consensus
Probab=97.36 E-value=0.004 Score=59.29 Aligned_cols=50 Identities=26% Similarity=0.253 Sum_probs=45.0
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCce
Q psy8436 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~ 303 (306)
.|+||...-.++||.+ + |+.-.-|.+|||+.+. +.++.+.+|+..|..++
T Consensus 862 ~gvyvt~rg~gspalq-~-l~aa~fitavng~~t~--~lddf~~~~~~ipdnsy 911 (955)
T KOG1421|consen 862 EGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTN--TLDDFYHMLLEIPDNSY 911 (955)
T ss_pred CceEEeecccCChhHh-h-cchheeEEEecccccC--cHHHHHHHHhhCCCCce
Confidence 5899999999999998 5 9999999999999985 56899999999998765
No 91
>KOG1320|consensus
Probab=97.35 E-value=0.0032 Score=58.41 Aligned_cols=47 Identities=17% Similarity=0.388 Sum_probs=40.8
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF 299 (306)
Q Consensus 250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~ 299 (306)
.+++|.+|.+++++...+ +++||+|+.|||+.+.++ .+...+|+..-
T Consensus 398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~~ 444 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEECS 444 (473)
T ss_pred eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhcC
Confidence 478999999999999876 999999999999999986 57777776654
No 92
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00053 Score=62.28 Aligned_cols=59 Identities=19% Similarity=0.361 Sum_probs=49.1
Q ss_pred CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCCC
Q psy8436 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNPD 93 (306)
Q Consensus 32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~~ 93 (306)
.|++|..|.+++||+++| ++.||.|+++||+.+.+ ..+....+... +..+.+.+.|..+
T Consensus 270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~--~~~l~~~v~~~~~g~~v~~~~~r~g~ 330 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVAS--LSDLVAAVASNRPGDEVALKLLRGGK 330 (347)
T ss_pred CceEEEecCCCChHHHcC-CCCCCEEEEECCEEccC--HHHHHHHHhccCCCCEEEEEEEECCE
Confidence 689999999999999999 99999999999999995 44444444443 6789999999843
No 93
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.33 E-value=0.00056 Score=62.28 Aligned_cols=62 Identities=21% Similarity=0.328 Sum_probs=47.2
Q ss_pred CcccEEEEcCCCCCCCCCcEEEEEE---c-----CCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCcee
Q psy8436 233 KSLGFSIVGGRDSPKGNLGIFVKTI---F-----QSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSK 304 (306)
Q Consensus 233 ~~lG~~l~gg~~~~~~~~gi~V~~V---~-----~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~ 304 (306)
..+|+.+.- .|++|-.. . .++||+++| |++||.|++|||.++.+ ++++.++|++..++.+.
T Consensus 96 ~~iGI~l~t--------~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s--~~DL~~iL~~~~g~~V~ 164 (402)
T TIGR02860 96 QSIGVKLNT--------KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKN--MDDLANLINKAGGEKLT 164 (402)
T ss_pred EEEEEEEec--------CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCeEE
Confidence 567777731 47777443 2 258999888 99999999999999975 57888999888766654
Q ss_pred c
Q psy8436 305 L 305 (306)
Q Consensus 305 l 305 (306)
|
T Consensus 165 L 165 (402)
T TIGR02860 165 L 165 (402)
T ss_pred E
Confidence 4
No 94
>KOG0606|consensus
Probab=97.30 E-value=0.00049 Score=68.72 Aligned_cols=75 Identities=24% Similarity=0.351 Sum_probs=59.8
Q ss_pred EEEEEeCCCCCcccEEEE------cCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436 223 TVTFQKGPGQKSLGFSIV------GGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296 (306)
Q Consensus 223 ~v~l~k~~~~~~lG~~l~------gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk 296 (306)
.|++.+.. .+|||++. |..+. --+-..|..|.+++||..+| |+.||-|+.|||+.+.++.|.|++++|-
T Consensus 629 pI~i~~~~--~~yGft~~airVy~Gd~d~--ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll 703 (1205)
T KOG0606|consen 629 PITIHFSG--KKYGFTLRAIRVYMGDKDV--YTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLL 703 (1205)
T ss_pred ceeeeccc--cccCceeeeEEEecCCccc--ceeeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHH
Confidence 37777774 68998872 44431 11346789999999999988 9999999999999999999999999998
Q ss_pred hcCCCc
Q psy8436 297 DIFPQS 302 (306)
Q Consensus 297 ~~~~~~ 302 (306)
+...+.
T Consensus 704 ~~gn~v 709 (1205)
T KOG0606|consen 704 KSGNKV 709 (1205)
T ss_pred hcCCee
Confidence 765543
No 95
>KOG1738|consensus
Probab=97.28 E-value=0.00023 Score=66.83 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=60.9
Q ss_pred CCcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCcee
Q psy8436 232 QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSK 304 (306)
Q Consensus 232 ~~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~ 304 (306)
..+||+-|...-+ ..++|..+.+++||+.+..|..||+|+.||+..+.+|.+.-.|+.|+..+.+.++
T Consensus 212 ~eglg~~I~Ssyd-----g~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l 279 (638)
T KOG1738|consen 212 SEGLGLYIDSSYD-----GPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIEL 279 (638)
T ss_pred ccCCceEEeeecC-----CceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCccccee
Confidence 4789999976555 4689999999999999999999999999999999999999999999998887654
No 96
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.25 E-value=0.00098 Score=61.72 Aligned_cols=66 Identities=17% Similarity=0.313 Sum_probs=48.8
Q ss_pred CCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCCC
Q psy8436 15 SNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDD 94 (306)
Q Consensus 15 ~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~~ 94 (306)
...||+.+.... .+..|..|.++|||.++| |.+||+|++|||.+-.-..+ ++++.+.+.+.|....
T Consensus 450 ~~~LGl~v~~~~-----g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~l~~~--------~~~d~i~v~~~~~~~L 515 (558)
T COG3975 450 AYYLGLKVKSEG-----GHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQLDRY--------KVNDKIQVHVFREGRL 515 (558)
T ss_pred CcccceEecccC-----CeeEEEecCCCChhHhcc-CCCccEEEEEcCcccccccc--------ccccceEEEEccCCce
Confidence 347888875322 358999999999999999 99999999999992221111 4567788888776543
No 97
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=97.12 E-value=0.0015 Score=56.49 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=38.4
Q ss_pred ChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CCeEEEEEEeCCCC
Q psy8436 43 GAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DSHVEIVICRNPDD 94 (306)
Q Consensus 43 s~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~~v~L~v~r~~~~ 94 (306)
..-.+.| ||.||.+++|||.+|.. -+++.+++++- ...++|+|.|+...
T Consensus 218 ~lF~~~G-Lq~GDva~sING~dL~D--~~qa~~l~~~L~~~tei~ltVeRdGq~ 268 (276)
T PRK09681 218 SLFDASG-FKEGDIAIALNQQDFTD--PRAMIALMRQLPSMDSIQLTVLRKGAR 268 (276)
T ss_pred HHHHHcC-CCCCCEEEEeCCeeCCC--HHHHHHHHHHhccCCeEEEEEEECCEE
Confidence 3456789 99999999999999994 46666666554 35799999998754
No 98
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.00 E-value=0.003 Score=44.94 Aligned_cols=55 Identities=27% Similarity=0.418 Sum_probs=37.2
Q ss_pred CcEEEEEEcCC--------ChhhhcC-CCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceecC
Q psy8436 250 LGIFVKTIFQS--------GQAAENE-KLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKLS 306 (306)
Q Consensus 250 ~gi~V~~V~~~--------g~A~~~G-~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l~ 306 (306)
.+..|..|.++ ||.++.| .+++||.|++|||+++..- .....+|.+..++.+.|+
T Consensus 12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~Lt 75 (88)
T PF14685_consen 12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLLT 75 (88)
T ss_dssp TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEEE
T ss_pred CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEEE
Confidence 36778999887 5666665 2679999999999999754 367888888888887763
No 99
>KOG3532|consensus
Probab=96.97 E-value=0.0031 Score=59.95 Aligned_cols=73 Identities=16% Similarity=0.384 Sum_probs=57.9
Q ss_pred eCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeC
Q psy8436 12 KDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRN 91 (306)
Q Consensus 12 r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~ 91 (306)
+..+..+|+..-...+ ..+-|-.|.+++||.++. |++||.+++|||+++. +..++..+++.....|...+.|.
T Consensus 382 ~~~s~~ig~vf~~~~~----~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~~ 454 (1051)
T KOG3532|consen 382 YDVSSPIGLVFDKNTN----RAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVERS 454 (1051)
T ss_pred ccccCceeEEEecCCc----eEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEeec
Confidence 3455667766653322 358899999999999998 9999999999999999 77899999999866666666553
No 100
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.96 E-value=0.00052 Score=63.52 Aligned_cols=50 Identities=28% Similarity=0.434 Sum_probs=38.9
Q ss_pred cccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCE--eCCCCCHHH
Q psy8436 234 SLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV--PLENKTHAE 290 (306)
Q Consensus 234 ~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~--~v~~~~~~e 290 (306)
.||+.+.... .+..|..|.++|||.++| |.+||.|++|||. .+.+....+
T Consensus 452 ~LGl~v~~~~------g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~l~~~~~~d 503 (558)
T COG3975 452 YLGLKVKSEG------GHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQLDRYKVND 503 (558)
T ss_pred ccceEecccC------CeeEEEecCCCChhHhcc-CCCccEEEEEcCcccccccccccc
Confidence 6788774322 468899999999999999 9999999999999 444443333
No 101
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=96.86 E-value=0.0075 Score=50.33 Aligned_cols=73 Identities=15% Similarity=0.271 Sum_probs=53.0
Q ss_pred cEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC--CC
Q psy8436 5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK--DS 82 (306)
Q Consensus 5 ~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~--~~ 82 (306)
+|.+-+.| .++-+|+.+..| .+++.-.+.| ||.||..++||+.++. +-+++..+|+.. ..
T Consensus 195 Irltpv~r-~eki~Gyr~~pg--------------kd~slF~~sg-lq~GDIavaiNnldlt--dp~~m~~llq~l~~m~ 256 (275)
T COG3031 195 IRLTPVIR-NEKIEGYRFEPG--------------KDGSLFYKSG-LQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMP 256 (275)
T ss_pred eEeeeEee-CCceEEEEecCC--------------CCcchhhhhc-CCCcceEEEecCcccC--CHHHHHHHHHhhhcCc
Confidence 44445545 345667766633 4567778889 9999999999999998 456777777765 45
Q ss_pred eEEEEEEeCCCCC
Q psy8436 83 HVEIVICRNPDDA 95 (306)
Q Consensus 83 ~v~L~v~r~~~~~ 95 (306)
.+.|+|.|++...
T Consensus 257 s~qlTv~R~G~rh 269 (275)
T COG3031 257 SLQLTVIRRGKRH 269 (275)
T ss_pred ceEEEEEecCccc
Confidence 6899999987543
No 102
>KOG3129|consensus
Probab=96.83 E-value=0.0025 Score=52.05 Aligned_cols=51 Identities=24% Similarity=0.200 Sum_probs=38.3
Q ss_pred EEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCC-HHHHHHHHhhcCCCce
Q psy8436 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKT-HAEAIAMFKDIFPQSS 303 (306)
Q Consensus 252 i~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~-~~eav~~Lk~~~~~~~ 303 (306)
.+|.+|.++|||+++| |+.||+|+++..+.-.+.. ........++..++.+
T Consensus 141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v 192 (231)
T KOG3129|consen 141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIV 192 (231)
T ss_pred EEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcce
Confidence 5799999999999988 9999999999887665543 4555555555544443
No 103
>KOG1320|consensus
Probab=96.55 E-value=0.0075 Score=55.98 Aligned_cols=61 Identities=30% Similarity=0.458 Sum_probs=51.2
Q ss_pred CCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC--CeEEEEEEeCCCCC
Q psy8436 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD--SHVEIVICRNPDDA 95 (306)
Q Consensus 32 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~--~~v~L~v~r~~~~~ 95 (306)
.+++|..|.|++++...+ +..||+|++|||+.+.++ .+...+++.|. ++|.++.++..+..
T Consensus 398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~~~e~~ 460 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRRSAEDA 460 (473)
T ss_pred eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEecCccce
Confidence 378999999999999888 999999999999999965 67888888884 47777777765443
No 104
>KOG4371|consensus
Probab=95.97 E-value=0.0082 Score=59.71 Aligned_cols=85 Identities=21% Similarity=0.373 Sum_probs=71.6
Q ss_pred ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436 4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH 83 (306)
Q Consensus 4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~ 83 (306)
.+..|.|.+.+..++|+.++.-... .|+||..+.-.+.|...|.|++||+++..+|+++.+.+-.+..+-++-.-+.
T Consensus 1245 ~l~~~~~~~~p~~~~~~~~~~~~~s---~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p 1321 (1332)
T KOG4371|consen 1245 PLISVMLLKKPMATLGLSLAKRTMS---DGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGP 1321 (1332)
T ss_pred hhhhheeeecccccccccccccCcC---CceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCc
Confidence 4566778888999999999765433 4899999999999999999999999999999999999988888877766667
Q ss_pred EEEEEEeC
Q psy8436 84 VEIVICRN 91 (306)
Q Consensus 84 v~L~v~r~ 91 (306)
|.+++.|.
T Consensus 1322 ~~~~~~~~ 1329 (1332)
T KOG4371|consen 1322 VQITVTRE 1329 (1332)
T ss_pred hhheehhh
Confidence 77877663
No 105
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.02 Score=51.96 Aligned_cols=47 Identities=26% Similarity=0.404 Sum_probs=39.3
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF 299 (306)
Q Consensus 250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~ 299 (306)
.|++|..|.+++||+++| ++.||.|+++||..+.+. .+....+....
T Consensus 270 ~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~--~~l~~~v~~~~ 316 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASL--SDLVAAVASNR 316 (347)
T ss_pred CceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCH--HHHHHHHhccC
Confidence 589999999999999998 999999999999999764 45555554443
No 106
>KOG3532|consensus
Probab=95.59 E-value=0.038 Score=52.85 Aligned_cols=65 Identities=22% Similarity=0.351 Sum_probs=50.4
Q ss_pred CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCceec
Q psy8436 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSKL 305 (306)
Q Consensus 233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~~l 305 (306)
..+|+-..... +..+-|..|.++++|.++. +.+||.+++|||+++. +..++...++......+.|
T Consensus 386 ~~ig~vf~~~~-----~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l 450 (1051)
T KOG3532|consen 386 SPIGLVFDKNT-----NRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVL 450 (1051)
T ss_pred CceeEEEecCC-----ceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccceEEE
Confidence 45666553221 2467899999999999987 9999999999999996 4679999998877655443
No 107
>PF12812 PDZ_1: PDZ-like domain
Probab=95.54 E-value=0.045 Score=38.09 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=36.8
Q ss_pred EEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFP 300 (306)
Q Consensus 252 i~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~ 300 (306)
.++.....++++.. +++..|-.|.+|||+++.++ ++.++.+|++|+
T Consensus 32 gv~v~~~~g~~~~~-~~i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ipd 77 (78)
T PF12812_consen 32 GVYVAVSGGSLAFA-GGISKGFIITSVNGKPTPDL--DDFIKVVKKIPD 77 (78)
T ss_pred EEEEEecCCChhhh-CCCCCCeEEEeECCcCCcCH--HHHHHHHHhCCC
Confidence 44445567777765 44999999999999999765 799999999886
No 108
>KOG4407|consensus
Probab=95.53 E-value=0.0071 Score=61.39 Aligned_cols=62 Identities=15% Similarity=0.366 Sum_probs=56.0
Q ss_pred CeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCC
Q psy8436 33 PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDA 95 (306)
Q Consensus 33 gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~~~ 95 (306)
-|||+.|.+++||+-+- ||.||+++.||...+.++-+.+++.++++....+.|.|.-.....
T Consensus 144 T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~~~dv 205 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPKECDV 205 (1973)
T ss_pred hhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCCCCceeccccCch
Confidence 59999999999999998 999999999999999999999999999999888888886655443
No 109
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=95.11 E-value=0.04 Score=48.13 Aligned_cols=48 Identities=29% Similarity=0.528 Sum_probs=40.9
Q ss_pred CcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ 301 (306)
Q Consensus 250 ~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~ 301 (306)
.|+|+..|..++++. |.|+.||.|++|||.++.. .+|...++++.+.+
T Consensus 130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~G 177 (342)
T COG3480 130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPG 177 (342)
T ss_pred eeEEEEEccCCcchh--ceeccCCeEEeeCCeecCC--HHHHHHHHhccCCC
Confidence 489999999999985 7799999999999999975 47999988765443
No 110
>KOG0792|consensus
Probab=94.81 E-value=0.2 Score=50.57 Aligned_cols=69 Identities=23% Similarity=0.432 Sum_probs=57.1
Q ss_pred CcccEEEEcCCCCCC--CCCcEEEEEEc-------------CCChhhhc-CCCCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436 233 KSLGFSIVGGRDSPK--GNLGIFVKTIF-------------QSGQAAEN-EKLREGDEIIAINGVPLENKTHAEAIAMFK 296 (306)
Q Consensus 233 ~~lG~~l~gg~~~~~--~~~gi~V~~V~-------------~~g~A~~~-G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk 296 (306)
+.+||-+.|+.+... -+.+..++.|. |++.|+.+ -++..||+++.|||.++....|++.+.+|+
T Consensus 716 g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~ir 795 (1144)
T KOG0792|consen 716 GRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLIR 795 (1144)
T ss_pred ccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHHh
Confidence 679999999888641 23567788888 88888665 458999999999999999999999999999
Q ss_pred hcCCC
Q psy8436 297 DIFPQ 301 (306)
Q Consensus 297 ~~~~~ 301 (306)
+...+
T Consensus 796 s~r~~ 800 (1144)
T KOG0792|consen 796 SPREN 800 (1144)
T ss_pred hhhhc
Confidence 87664
No 111
>PF12812 PDZ_1: PDZ-like domain
Probab=94.78 E-value=0.11 Score=36.12 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=38.4
Q ss_pred CeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436 33 PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS 82 (306)
Q Consensus 33 gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~ 82 (306)
|.++.....|+++..-| +..|-.|.+|||+++. +.++.+++++..++
T Consensus 31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTP--DLDDFIKVVKKIPD 77 (78)
T ss_pred CEEEEEecCCChhhhCC-CCCCeEEEeECCcCCc--CHHHHHHHHHhCCC
Confidence 35555678888888666 9999999999999999 56888888887754
No 112
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=94.21 E-value=0.088 Score=45.72 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=27.1
Q ss_pred hcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436 265 ENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ 301 (306)
Q Consensus 265 ~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~ 301 (306)
+.| |++||.+++|||.++.+. +++.+++++.+..
T Consensus 222 ~~G-Lq~GDva~sING~dL~D~--~qa~~l~~~L~~~ 255 (276)
T PRK09681 222 ASG-FKEGDIAIALNQQDFTDP--RAMIALMRQLPSM 255 (276)
T ss_pred HcC-CCCCCEEEEeCCeeCCCH--HHHHHHHHHhccC
Confidence 456 999999999999999864 6777777766553
No 113
>KOG3834|consensus
Probab=91.73 E-value=0.9 Score=41.53 Aligned_cols=85 Identities=12% Similarity=0.228 Sum_probs=59.0
Q ss_pred ccEEEEEEeCCCCc---eeEEEEecCC-CCcCCCeEEEEeCCCChhcccCCCC-CCCEEEEE-CCEeCCCCCHHHHHHHH
Q psy8436 4 QFKVFRVVKDDSNE---LGIYIERQDG-GAHFSPYLISHIEPGGAIHRDGRFH-VGDELIKV-NDKRLKGLTIQEAREAL 77 (306)
Q Consensus 4 ~~~~v~l~r~~~~~---lG~~i~gg~~-~~~~~gi~V~~V~~gs~A~~~G~L~-~GD~Il~V-NG~~l~~~~~~~a~~~l 77 (306)
++|.|.|......+ ||++|+=-.. .....-..|-+|.+++||+++| |+ .+|-|+-+ |.+.- ..++...+|
T Consensus 77 ~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~~---~~eDl~~lI 152 (462)
T KOG3834|consen 77 EVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVMH---EEEDLFTLI 152 (462)
T ss_pred eeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcc-cccccceEecchhhhcc---chHHHHHHH
Confidence 57888898887778 9999864432 1111224578899999999999 77 89999988 55433 345566666
Q ss_pred hcC-CCeEEEEEEeCC
Q psy8436 78 NNK-DSHVEIVICRNP 92 (306)
Q Consensus 78 ~~~-~~~v~L~v~r~~ 92 (306)
... ++.+.|.|....
T Consensus 153 eshe~kpLklyVYN~D 168 (462)
T KOG3834|consen 153 ESHEGKPLKLYVYNHD 168 (462)
T ss_pred HhccCCCcceeEeecC
Confidence 655 556788776543
No 114
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=90.77 E-value=0.83 Score=41.82 Aligned_cols=53 Identities=19% Similarity=0.439 Sum_probs=41.2
Q ss_pred EEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCe---EEEEEEe
Q psy8436 35 LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSH---VEIVICR 90 (306)
Q Consensus 35 ~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~---v~L~v~r 90 (306)
++..+..+++|+.+| |+.||+|+++|+..+.. ..++...+... +.. +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVAS--WDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccC--HHHHHHHHHhccCCcccceEEEEEe
Confidence 344789999999999 99999999999999995 45555555443 334 6777877
No 115
>KOG2921|consensus
Probab=87.24 E-value=1.1 Score=40.63 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=39.2
Q ss_pred CCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436 249 NLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298 (306)
Q Consensus 249 ~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~ 298 (306)
+.|+.|.+|...+|+----+|.+||+|..+||.+|.. .++..+.|+.+
T Consensus 219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~--v~dW~ecl~ts 266 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHK--VSDWLECLATS 266 (484)
T ss_pred CceEEEEeccccCCCcCcccCCccceEEecCCcccCC--HHHHHHHHHhh
Confidence 3588999999999886544599999999999999976 46888877763
No 116
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=85.61 E-value=2.2 Score=38.98 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=35.0
Q ss_pred EEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436 253 FVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIF 299 (306)
Q Consensus 253 ~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~ 299 (306)
++..+..+++|+.+| |++||+|+++|+..+..+ .+....+....
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~--~~~~~~~~~~~ 175 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASW--DDVRRLLVAAA 175 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccCH--HHHHHHHHhcc
Confidence 455799999999998 999999999999999765 45555554433
No 117
>KOG2921|consensus
Probab=85.30 E-value=1.7 Score=39.46 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=38.0
Q ss_pred CCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy8436 31 FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN 79 (306)
Q Consensus 31 ~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~ 79 (306)
..|+.|..|...||+---..|.+||.|.++||..|.+ -++-...++.
T Consensus 219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~--v~dW~ecl~t 265 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHK--VSDWLECLAT 265 (484)
T ss_pred CceEEEEeccccCCCcCcccCCccceEEecCCcccCC--HHHHHHHHHh
Confidence 3689999999999886554599999999999999994 5666666665
No 118
>KOG0792|consensus
Probab=83.33 E-value=0.66 Score=47.03 Aligned_cols=73 Identities=12% Similarity=0.228 Sum_probs=56.8
Q ss_pred EEEEeCCCCceeEEEEecCCCC---cCCCeEEEEeC-------------CCChhcccC-CCCCCCEEEEECCEeCCCCCH
Q psy8436 8 FRVVKDDSNELGIYIERQDGGA---HFSPYLISHIE-------------PGGAIHRDG-RFHVGDELIKVNDKRLKGLTI 70 (306)
Q Consensus 8 v~l~r~~~~~lG~~i~gg~~~~---~~~gi~V~~V~-------------~gs~A~~~G-~L~~GD~Il~VNG~~l~~~~~ 70 (306)
+.|..++.+.|||.+.|+.+-. --....++.+. |+++|+.+. ++..||+++.|||.++....|
T Consensus 708 ~~~~~~~~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~ 787 (1144)
T KOG0792|consen 708 SYLAEDPPGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEH 787 (1144)
T ss_pred cccccCCCccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccc
Confidence 3455556789999999983321 11246677777 888886654 489999999999999999999
Q ss_pred HHHHHHHhcC
Q psy8436 71 QEAREALNNK 80 (306)
Q Consensus 71 ~~a~~~l~~~ 80 (306)
+..+.+++++
T Consensus 788 ~~~vs~irs~ 797 (1144)
T KOG0792|consen 788 DQVVSLIRSP 797 (1144)
T ss_pred cchHHHHhhh
Confidence 9999999987
No 119
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=81.84 E-value=2.3 Score=34.68 Aligned_cols=38 Identities=18% Similarity=0.410 Sum_probs=31.3
Q ss_pred ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEE
Q psy8436 17 ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60 (306)
Q Consensus 17 ~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~V 60 (306)
..|+.+....+ .+.|..|..||+|++.| +.-+++|++|
T Consensus 112 ~~GL~l~~e~~-----~~~Vd~v~fgS~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 112 AAGLTLMEEGG-----KVIVDEVEFGSPAEKAG-IDFDWEITEV 149 (183)
T ss_pred hCCCEEEeeCC-----EEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence 35777775432 49999999999999999 9999988876
No 120
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=81.57 E-value=2.7 Score=35.55 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=36.2
Q ss_pred CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCC
Q psy8436 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQ 301 (306)
Q Consensus 233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~ 301 (306)
.-+|+.+.-|++ ++.-.+.| |+.||..++||+.++.+ -+++..+|+..+..
T Consensus 205 ki~Gyr~~pgkd---------------~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq~l~~m 255 (275)
T COG3031 205 KIEGYRFEPGKD---------------GSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQMLRNM 255 (275)
T ss_pred ceEEEEecCCCC---------------cchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHHhhhcC
Confidence 457777765554 33445567 99999999999999865 46677777665543
No 121
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=74.74 E-value=5.7 Score=32.38 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=31.9
Q ss_pred cccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEEC
Q psy8436 234 SLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279 (306)
Q Consensus 234 ~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VN 279 (306)
..|+.+..-. ..+.|..|..||+|+++| +.-|++|.+|-
T Consensus 112 ~~GL~l~~e~------~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v~ 150 (183)
T PF11874_consen 112 AAGLTLMEEG------GKVIVDEVEFGSPAEKAG-IDFDWEITEVE 150 (183)
T ss_pred hCCCEEEeeC------CEEEEEecCCCCHHHHcC-CCCCcEEEEEE
Confidence 3688876432 358999999999999998 99999998873
No 122
>KOG1945|consensus
Probab=68.08 E-value=3 Score=37.26 Aligned_cols=77 Identities=29% Similarity=0.411 Sum_probs=63.1
Q ss_pred CCCceeEEEEecCCCC----cCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEE
Q psy8436 14 DSNELGIYIERQDGGA----HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVIC 89 (306)
Q Consensus 14 ~~~~lG~~i~gg~~~~----~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~ 89 (306)
+..++|+++.|-..+. ...++|+.++.+|+.-+++|+..+-|.+..+.+..+..++...+.+..+.+-..+.+...
T Consensus 108 ~~~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~s~~~k~lp~vp~s~~~es~g~S~~~~n~~s~ 187 (377)
T KOG1945|consen 108 GAEGLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDSKSLPGVPFSWFAESLGGSSSRVNFTSP 187 (377)
T ss_pred CcCCCCccccccccchhccchhhcceeecccccccccccccccccccccccccCCCCCcchhhhhcccccchhccCCccc
Confidence 6678888888753222 234799999999999999999999999999999999999999999999887665555543
Q ss_pred e
Q psy8436 90 R 90 (306)
Q Consensus 90 r 90 (306)
+
T Consensus 188 ~ 188 (377)
T KOG1945|consen 188 T 188 (377)
T ss_pred c
Confidence 3
No 123
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=49.47 E-value=37 Score=27.86 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=33.5
Q ss_pred cCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436 48 DGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84 (306)
Q Consensus 48 ~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v 84 (306)
.|.+..||+++=|++.--.+-|...++++++++|..|
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V 152 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYI 152 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEE
Confidence 4668999999999999999999999999999997654
No 124
>PF07497 Rho_RNA_bind: Rho termination factor, RNA-binding domain; InterPro: IPR011113 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers [].; GO: 0003723 RNA binding, 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=48.76 E-value=41 Score=23.30 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=21.0
Q ss_pred CceeEEEEecCCCC-cCCCeEEEEeCCCChhcccCCCCCCCEEE
Q psy8436 16 NELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELI 58 (306)
Q Consensus 16 ~~lG~~i~gg~~~~-~~~gi~V~~V~~gs~A~~~G~L~~GD~Il 58 (306)
+|+||=-....+.. ...-+||+ .+...+-| |+.||.|.
T Consensus 12 dGyGFLR~~~~~y~~~~~DvYVs----~~qIrrf~-LR~GD~V~ 50 (78)
T PF07497_consen 12 DGYGFLRSPDNNYLPSPDDVYVS----PSQIRRFG-LRTGDLVE 50 (78)
T ss_dssp TS-EEEE-GGGTTS-STTSEEE-----CCCCCCTT---TTEEEE
T ss_pred CCcEEeECCCcCCCCCCCCEEEC----HHHHHHcC-CCCCCEEE
Confidence 58999777621111 01238884 57777888 99999986
No 125
>KOG1945|consensus
Probab=48.66 E-value=13 Score=33.38 Aligned_cols=75 Identities=25% Similarity=0.350 Sum_probs=57.2
Q ss_pred EEEEEEeCCCCCcccEEEEcCCC---CCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhc
Q psy8436 222 FTVTFQKGPGQKSLGFSIVGGRD---SPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298 (306)
Q Consensus 222 ~~v~l~k~~~~~~lG~~l~gg~~---~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~ 298 (306)
..+.+.++. .++|+++.|-.. ..+...++|+..+.+++.-++.|+..+-|++..+.+.....+....+++.++.+
T Consensus 101 ~e~av~~~~--~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~s~~~k~lp~vp~s~~~es~g~S 178 (377)
T KOG1945|consen 101 FEVAVEKGA--EGLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDSKSLPGVPFSWFAESLGGS 178 (377)
T ss_pred hhhhccCCc--CCCCccccccccchhccchhhcceeecccccccccccccccccccccccccCCCCCcchhhhhcccccc
Confidence 345555553 577777765221 112246899999999999999999999999999999999999888888777654
No 126
>KOG0708|consensus
Probab=46.88 E-value=21 Score=32.36 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=32.5
Q ss_pred EEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCCCC
Q psy8436 58 IKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDD 94 (306)
Q Consensus 58 l~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~~~ 94 (306)
+++||.++.+.+|+++.+.++.+++.|++.+.-..+.
T Consensus 1 ~~~~~~~~~~~~~~~~a~~l~~sg~~~~i~~q~~~e~ 37 (359)
T KOG0708|consen 1 LSVNGVDGRNATHEDAAAALKTSGDSVYIRAQYRPEE 37 (359)
T ss_pred CcccccccccchHHHHHHHhhcCCCceEEEEEechhh
Confidence 3689999999999999999999999999999765543
No 127
>KOG3686|consensus
Probab=42.60 E-value=44 Score=33.33 Aligned_cols=74 Identities=9% Similarity=0.009 Sum_probs=56.7
Q ss_pred ccEEEEEEeCCCCceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436 4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH 83 (306)
Q Consensus 4 ~~~~v~l~r~~~~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~ 83 (306)
+.....+.+...+.+||.+... -.+..+.+..-|..+| | |-+++.++...+...+|+.+..++... ..
T Consensus 592 e~~~~~~~r~~~~~~~fhv~~e--------~~~~~~e~~~~~~~a~-l--g~~~~~~~~~~~~Tla~~~~~~l~~~s-~~ 659 (740)
T KOG3686|consen 592 EVETRALYRADAEAVGFHVSTE--------GNGDVQEKWKHAGNAE-L--GSRENTRKKYTRETLATKFCDVLLVLS-QV 659 (740)
T ss_pred eeeeeeecccccccccceeccc--------ccceeecccccccccc-c--cceeeeehhhhhhhhhhhhhhhhhhhh-hc
Confidence 3455666666666788888732 4466788889999999 7 999999999999999999999999876 23
Q ss_pred EEEEEE
Q psy8436 84 VEIVIC 89 (306)
Q Consensus 84 v~L~v~ 89 (306)
+.+.+.
T Consensus 660 v~~~~~ 665 (740)
T KOG3686|consen 660 VDKMVR 665 (740)
T ss_pred cceeec
Confidence 444443
No 128
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=42.45 E-value=32 Score=28.19 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=32.2
Q ss_pred CCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCc
Q psy8436 267 EKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQS 302 (306)
Q Consensus 267 G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~ 302 (306)
|.+.+||+++=|+++-..|-|..++++++++.....
T Consensus 117 g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V 152 (187)
T PRK13810 117 GDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYI 152 (187)
T ss_pred ccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEE
Confidence 568899999999999999999999999999986543
No 129
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=41.56 E-value=17 Score=32.16 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=28.1
Q ss_pred EEEEEEcCCChhhhcCCCCCCCEEEEECCEeCC
Q psy8436 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLE 284 (306)
Q Consensus 252 i~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~ 284 (306)
+-+-+|.+.++|.++| .-.||-|+-+|+.++.
T Consensus 65 l~~lrv~~~~~~e~~~-~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 65 LEVLRVNPESPAEKAG-MVVGDYILGINEDPLR 96 (417)
T ss_pred hhheeccccChhHhhc-cccceeEEeecCCcHH
Confidence 4577899999999998 9999999999987763
No 130
>PRK03760 hypothetical protein; Provisional
Probab=41.13 E-value=31 Score=25.94 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=18.8
Q ss_pred cEEEEEEcCCChhhhcCCCCCCCEEE
Q psy8436 251 GIFVKTIFQSGQAAENEKLREGDEII 276 (306)
Q Consensus 251 gi~V~~V~~~g~A~~~G~L~~GD~Il 276 (306)
-.||-++ +.|.+++.| |++||+|.
T Consensus 90 a~~VLEl-~aG~~~~~g-i~~Gd~v~ 113 (117)
T PRK03760 90 ARYIIEG-PVGKIRVLK-VEVGDEIE 113 (117)
T ss_pred ceEEEEe-CCChHHHcC-CCCCCEEE
Confidence 4588887 557777778 99999983
No 131
>PRK15464 cold shock-like protein CspH; Provisional
Probab=39.82 E-value=1.2e+02 Score=20.48 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=20.7
Q ss_pred CCCceeEEEEecCCCCcCCCeEE--EEeCCCChhcccCCCCCCCEEE
Q psy8436 14 DSNELGIYIERQDGGAHFSPYLI--SHIEPGGAIHRDGRFHVGDELI 58 (306)
Q Consensus 14 ~~~~lG~~i~gg~~~~~~~gi~V--~~V~~gs~A~~~G~L~~GD~Il 58 (306)
...||||-.. .+.+ .-||| +.+...+. . .|++||+|-
T Consensus 14 ~~KGfGFI~~-~~g~---~DvFvH~s~l~~~g~---~-~l~~G~~V~ 52 (70)
T PRK15464 14 RKSGKGFIIP-SDGR---KEVQVHISAFTPRDA---E-VLIPGLRVE 52 (70)
T ss_pred CCCCeEEEcc-CCCC---ccEEEEehhehhcCC---C-CCCCCCEEE
Confidence 5679999443 3222 23664 44433321 1 399999874
No 132
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=36.45 E-value=34 Score=26.08 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=22.4
Q ss_pred CCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436 267 EKLREGDEIIAINGVPLENKTHAEAIAMFKDIF 299 (306)
Q Consensus 267 G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~ 299 (306)
-++++|+.|+||.+ .+.+.|.+.|+.+.
T Consensus 94 arV~~G~ilfEi~~-----~~~~~a~~al~~a~ 121 (126)
T TIGR01164 94 AVVKPGKILFEIAG-----VPEEVAREAFRLAA 121 (126)
T ss_pred EEECCCCEEEEEeC-----CCHHHHHHHHHHHH
Confidence 35899999999999 35678888887754
No 133
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=36.39 E-value=32 Score=25.54 Aligned_cols=29 Identities=17% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCC
Q psy8436 268 KLREGDEIIAINGVPLENKTHAEAIAMFKDIFP 300 (306)
Q Consensus 268 ~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~ 300 (306)
++++|+.|+|+.|.+. .+.|.+.|+.+..
T Consensus 75 ~v~~G~iifEi~~~~~----~~~~~~alk~a~~ 103 (112)
T cd01433 75 RVKPGQILFEVRGVPE----EEVAKEALRRAAK 103 (112)
T ss_pred EECCCCEEEEEeCcCc----HHHHHHHHHHhhc
Confidence 4788999999999875 5677777776543
No 134
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=36.08 E-value=98 Score=25.76 Aligned_cols=40 Identities=30% Similarity=0.295 Sum_probs=35.4
Q ss_pred hcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436 45 IHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84 (306)
Q Consensus 45 A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v 84 (306)
.-..|.+..|++++-|+++-..+-+.-+++.+|+..|..|
T Consensus 103 ~~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V 142 (201)
T COG0461 103 GLIEGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEV 142 (201)
T ss_pred ceeEecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeE
Confidence 5556668899999999999999999999999999997765
No 135
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=35.08 E-value=36 Score=26.41 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=22.4
Q ss_pred CCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436 267 EKLREGDEIIAINGVPLENKTHAEAIAMFKDIF 299 (306)
Q Consensus 267 G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~ 299 (306)
-++++|+.|+||.| .+.+.|.+.|+.+.
T Consensus 95 arVk~G~iifEi~~-----~~~~~a~~al~~a~ 122 (138)
T PRK09203 95 AVVKPGRILFEIAG-----VSEELAREALRLAA 122 (138)
T ss_pred EEECCCCEEEEEeC-----CCHHHHHHHHHHHh
Confidence 35899999999999 35578888888763
No 136
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=32.95 E-value=53 Score=26.60 Aligned_cols=37 Identities=14% Similarity=0.416 Sum_probs=32.4
Q ss_pred CCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCce
Q psy8436 267 EKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 267 G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~ 303 (306)
|.+..|++++=|+++-..|-|..+++++|++.....+
T Consensus 102 g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv 138 (176)
T PRK13812 102 GRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVN 138 (176)
T ss_pred ecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEE
Confidence 4588999999999999999999999999998876543
No 137
>PRK04056 Maf-like protein; Reviewed
Probab=32.39 E-value=85 Score=25.57 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=28.0
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCcee
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSSK 304 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~~ 304 (306)
+--.|+|+..||.-+.- .++++|.++|+...++.-.
T Consensus 64 vI~aDTvV~~~g~ilgKP~~~~eA~~~L~~lsg~~h~ 100 (180)
T PRK04056 64 LLVADSVVSCGNKILRKAKDKEEAREMLKLQSGNEIS 100 (180)
T ss_pred EEEeCEEEEECCEEecCCCCHHHHHHHHHHHCCCcEE
Confidence 44568888899976654 6899999999998776543
No 138
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=32.17 E-value=87 Score=25.76 Aligned_cols=34 Identities=9% Similarity=0.181 Sum_probs=31.6
Q ss_pred CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436 51 FHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84 (306)
Q Consensus 51 L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v 84 (306)
+..||++|=|++.--.+-|...+.+++++++..|
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~V 147 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKI 147 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEE
Confidence 7899999999999999999999999999997653
No 139
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=32.10 E-value=86 Score=25.35 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=29.0
Q ss_pred cCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC----CCeEEEEEEeC
Q psy8436 48 DGRFHVGDELIKVNDKRLKGLTIQEAREALNNK----DSHVEIVICRN 91 (306)
Q Consensus 48 ~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~----~~~v~L~v~r~ 91 (306)
.-++++|+.|++|.|... +.+.|...|+.+ +-...+++.+.
T Consensus 123 va~Vk~G~ilfei~~~~~---~~~~akeAlr~a~~KLP~k~kiv~~~~ 167 (172)
T PRK04199 123 AARVEKGQKIFTVRVNPE---HLEAAKEALRRAAMKLPTPCRIVVEKG 167 (172)
T ss_pred EEEECcCCEEEEEEecCC---CHHHHHHHHHHhhccCCCcEEEEEecc
Confidence 335789999999987654 567888888877 44456665543
No 140
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=32.02 E-value=42 Score=24.73 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=15.5
Q ss_pred cEEEEEEcCCChhhhcCCCCCCCEEE
Q psy8436 251 GIFVKTIFQSGQAAENEKLREGDEII 276 (306)
Q Consensus 251 gi~V~~V~~~g~A~~~G~L~~GD~Il 276 (306)
.-||-++.+ |.+++.| |++||+|-
T Consensus 82 a~~vLE~~a-G~~~~~~-i~~Gd~v~ 105 (108)
T PF02643_consen 82 ARYVLELPA-GWFEKLG-IKVGDRVR 105 (108)
T ss_dssp ECEEEEEET-THHHHHT---TT-EEE
T ss_pred cCEEEEcCC-CchhhcC-CCCCCEEE
Confidence 457889865 5666677 99999984
No 141
>PRK00078 Maf-like protein; Reviewed
Probab=31.88 E-value=86 Score=25.83 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=27.5
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|.|+.+||.-+.- .+.+||.++|+...++.-
T Consensus 67 vI~aDTvV~~~g~ilgKP~~~eeA~~~L~~lsG~~h 102 (192)
T PRK00078 67 VIGCDTIVAFNGKVLGKPKDEEDAFEMLKALSGNEH 102 (192)
T ss_pred EEEeCeEEEECCEEeCCCCCHHHHHHHHHHHCCCcE
Confidence 34468889999976654 679999999999877654
No 142
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=31.47 E-value=29 Score=26.56 Aligned_cols=17 Identities=24% Similarity=0.474 Sum_probs=11.1
Q ss_pred cCCCCCCCEEEEECCEe
Q psy8436 48 DGRFHVGDELIKVNDKR 64 (306)
Q Consensus 48 ~G~L~~GD~Il~VNG~~ 64 (306)
++.|++||+|+..+|..
T Consensus 74 A~~L~~GD~L~~~~G~~ 90 (130)
T PF07591_consen 74 AEDLKVGDRLLTADGSW 90 (130)
T ss_dssp GGG--TTSEEEEE-SSE
T ss_pred HhhCCCCCEEEcCCCCE
Confidence 34599999999999854
No 143
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=31.11 E-value=87 Score=25.57 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=27.5
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|+|+.++|.-+.- .+++||.++|+...++.-
T Consensus 66 vI~aDTvV~~~g~ilgKP~~~~eA~~~L~~lsG~~h 101 (183)
T TIGR00172 66 IIGADTVVILDGEIYGKPKDKEEAAEFLRKLSGQEH 101 (183)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHHhCCCCc
Confidence 44568888899876655 689999999999877653
No 144
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=31.02 E-value=92 Score=25.73 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=29.0
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCcee
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSSK 304 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~~ 304 (306)
+--.|.++.++|.-+.- .+.++|.++|+...++...
T Consensus 67 VigaDtvv~ldgrilgKP~~~~eA~~~L~~lSG~~h~ 103 (193)
T COG0424 67 VIGADTVVVLDGRILGKPKDEEEAREMLRKLSGRTHQ 103 (193)
T ss_pred EEecCeEEEECCEEecCCCCHHHHHHHHHHhcCCeEE
Confidence 44578999999987765 6899999999998777644
No 145
>KOG4060|consensus
Probab=31.02 E-value=1.8e+02 Score=22.87 Aligned_cols=74 Identities=9% Similarity=0.150 Sum_probs=49.7
Q ss_pred CceeEEEEecCCCCcCCCeEEEEeCCCChh-cccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcC-CCeEEEEEEeCC
Q psy8436 16 NELGIYIERQDGGAHFSPYLISHIEPGGAI-HRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNK-DSHVEIVICRNP 92 (306)
Q Consensus 16 ~~lG~~i~gg~~~~~~~gi~V~~V~~gs~A-~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~-~~~v~L~v~r~~ 92 (306)
+.|||.+...=.- ..+.+-|-...|.|-. .-+-.|..-||++.+||.+-. -.+.-.++++.+ +.-|+|.|.-..
T Consensus 79 ~~l~~~V~dsYA~-p~qt~~v~~l~p~stv~ese~~ltTyeRvvqls~v~Ap--~~~~Fl~iiqa~lPeGV~l~VkEht 154 (176)
T KOG4060|consen 79 NSLSIKVEDSYAM-PTQTIEVLQLQPQSTVMESESVLTTYERVVQLSGVSAP--FAEIFLEIIQASLPEGVRLSVKEHT 154 (176)
T ss_pred HHcCceeEeeecc-CccceeEEEecCCceeeehhhhhhhhhheeeecccCch--hHHHHHHHHHHhCCcceEEEeeecc
Confidence 3566766543110 1134667777887643 333449999999999998765 456777888877 778999997543
No 146
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=30.99 E-value=36 Score=30.24 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=26.8
Q ss_pred eEEEEeCCCCh---hcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy8436 34 YLISHIEPGGA---IHRDGRFHVGDELIKVNDKRLKGLTIQEAREA 76 (306)
Q Consensus 34 i~V~~V~~gs~---A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~ 76 (306)
++=-++..|.- ++--|.||+||.+|.|-|.+-. +.++++-+
T Consensus 84 ~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYD--TLeevIG~ 127 (416)
T COG4100 84 LVRPQIISGTHAIACALFGILRPGDELLYITGSPYD--TLEEVIGL 127 (416)
T ss_pred eeeeeeecchhHHHHHHHhccCCCCeEEEecCCcch--hHHHHhcc
Confidence 33334444553 3344789999999999998876 45555443
No 147
>PRK14367 Maf-like protein; Provisional
Probab=30.96 E-value=87 Score=26.05 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=27.2
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|+|+.+||.-+.- .+.+||.++|+...++.-
T Consensus 72 vI~aDTvV~~dg~IlgKP~~~eeA~~~L~~lsG~~h 107 (202)
T PRK14367 72 LITADTCVVSDGIILGKPRSQAEAIEFLNRLSGKQH 107 (202)
T ss_pred EEEeCcEEEECCEEecCCCCHHHHHHHHHHhCCCCe
Confidence 34468888899976654 689999999999877654
No 148
>PRK14364 Maf-like protein; Provisional
Probab=30.94 E-value=92 Score=25.39 Aligned_cols=35 Identities=11% Similarity=0.285 Sum_probs=27.2
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|+|+.+||.-+.- .+.++|..+|+...++.-
T Consensus 60 vI~aDTvV~~~g~ilgKP~~~eeA~~~L~~lsG~~h 95 (181)
T PRK14364 60 IIAADTSLGLDGQIIGKPDSKQHAFDIWKQLSGRWH 95 (181)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHHhCCCCe
Confidence 34468888899976654 679999999999887753
No 149
>PRK00148 Maf-like protein; Reviewed
Probab=30.93 E-value=80 Score=26.08 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=27.7
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|+|+.+||.-+.- .+.+||.++|+...++..
T Consensus 64 vI~aDTvV~~~g~Il~KP~~~eeA~~~L~~lsG~~h 99 (194)
T PRK00148 64 VLGCDSMLLIDGRLLGKPHTPEEAIERWQQMSGRTG 99 (194)
T ss_pred EEEeCcEEEECCEEecCCCCHHHHHHHHHHhCCCCc
Confidence 44568999999976654 689999999999877653
No 150
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=30.70 E-value=44 Score=30.89 Aligned_cols=34 Identities=35% Similarity=0.367 Sum_probs=29.5
Q ss_pred EEEEeCCCChhcccCCCCCCCEEEEEC-CEeCCCCC
Q psy8436 35 LISHIEPGGAIHRDGRFHVGDELIKVN-DKRLKGLT 69 (306)
Q Consensus 35 ~V~~V~~gs~A~~~G~L~~GD~Il~VN-G~~l~~~~ 69 (306)
.|+++.+++.|+..| +..||-++.|| |.....+.
T Consensus 4 ~i~~v~~~~~~d~~G-fe~~~~l~~Vn~~~~~~~c~ 38 (414)
T COG1625 4 KISKVGGISGADCDG-FEEGDYLLKVNPGFGCKDCI 38 (414)
T ss_pred ceeeccCCCcccccC-ccccceeeecCCCCCCCcCC
Confidence 478899999999999 99999999999 87776653
No 151
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=30.11 E-value=1e+02 Score=25.65 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=32.4
Q ss_pred CCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436 49 GRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84 (306)
Q Consensus 49 G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v 84 (306)
|.+..|++++=|++.-..+-|..+++++|+++|..+
T Consensus 113 g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~v 148 (206)
T PRK13809 113 GLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVV 148 (206)
T ss_pred cccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEE
Confidence 457899999999999999999999999999997653
No 152
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=30.07 E-value=1e+02 Score=23.97 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=26.7
Q ss_pred CChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCC
Q psy8436 42 GGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD 81 (306)
Q Consensus 42 gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~ 81 (306)
|.+..-+-++++|+.|++|.| .+.+.|..+|+.+.
T Consensus 88 G~~~~~varVk~G~iifEi~~-----~~~~~a~~al~~a~ 122 (138)
T PRK09203 88 GSPEYWVAVVKPGRILFEIAG-----VSEELAREALRLAA 122 (138)
T ss_pred CCCcEEEEEECCCCEEEEEeC-----CCHHHHHHHHHHHh
Confidence 444444456999999999998 35788999998873
No 153
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=29.99 E-value=39 Score=25.03 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=15.9
Q ss_pred EcCCChhhhcCCCCCCCEEEEEC
Q psy8436 257 IFQSGQAAENEKLREGDEIIAIN 279 (306)
Q Consensus 257 V~~~g~A~~~G~L~~GD~Il~VN 279 (306)
|.-+|+|++. .++||+|+=..
T Consensus 68 I~lNGAAAr~--~~~GD~vII~s 88 (111)
T cd06919 68 ICLNGAAARL--GQPGDRVIIMA 88 (111)
T ss_pred EEeCCHHHhc--CCCCCEEEEEE
Confidence 4457999875 79999988554
No 154
>PRK14361 Maf-like protein; Provisional
Probab=29.88 E-value=96 Score=25.44 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=27.8
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCcee
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSSK 304 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~~ 304 (306)
+--.|+|+.+||.-+.- .+.++|.++|+...++.-.
T Consensus 61 vI~aDTvV~~~g~ilgKP~~~eeA~~~L~~lsG~~h~ 97 (187)
T PRK14361 61 VIAADTVVALGGVLLAKPADEAENEAFLRVLSGRTHQ 97 (187)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHHhCCCceE
Confidence 44568888889976654 6899999999998776543
No 155
>PRK02478 Maf-like protein; Reviewed
Probab=29.53 E-value=94 Score=25.78 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=27.4
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|+|+.+||.-+.- .+.+||.++|+...++.-
T Consensus 72 vI~aDTvV~~~g~ilgKP~~~~eA~~~L~~lsG~~h 107 (199)
T PRK02478 72 VIGCDQTMSLGDEVFHKPKDMEEARRHLQKLSGKTH 107 (199)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHHhcCCCc
Confidence 44468889999976655 689999999999877654
No 156
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=29.42 E-value=56 Score=26.87 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=31.2
Q ss_pred CCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~ 303 (306)
+.+||++|=|+++-..|-|...++++++++....+
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vv 148 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIA 148 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEE
Confidence 78999999999999999999999999999876543
No 157
>PRK01526 Maf-like protein; Reviewed
Probab=29.39 E-value=97 Score=25.83 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=27.9
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCcee
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSSK 304 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~~ 304 (306)
+--.|+|+.+||.-+.- .+.+||.++|+...++...
T Consensus 73 VI~aDTvV~~~g~IlgKP~~~~eA~~mL~~lsG~~h~ 109 (205)
T PRK01526 73 IIAADTVAAVGRRILPKATTYEEVKNCIKMLSGRRHR 109 (205)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHHhCCCCeE
Confidence 44468899999976654 6799999999998776543
No 158
>PLN02557 phosphoribosylformylglycinamidine cyclo-ligase
Probab=29.14 E-value=1e+02 Score=28.45 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=39.8
Q ss_pred ceeEEEEecCCCCc----------CCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhc
Q psy8436 17 ELGIYIERQDGGAH----------FSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN 79 (306)
Q Consensus 17 ~lG~~i~gg~~~~~----------~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~ 79 (306)
.+|+.|.||+.... ..+..|..+.++.+-.+.+ .++||.|+-+...-+.+..+.-+...|..
T Consensus 171 ~~Gv~lVGGdT~~~p~~~~~~~~~i~~t~iG~v~~~~~i~~~~-akpGD~Iigl~ssGiHsng~sl~r~~l~~ 242 (379)
T PLN02557 171 QSDCALLGGETAEMPGFYAEGEYDLSGFAVGSVKKDAVIDGKN-IVAGDVLIGLPSSGVHSNGFSLVRRVLAK 242 (379)
T ss_pred HhCCEEEeecceEccCcccCCceeEEEEEEEEEeccccccccc-CCCCCEEEEecccccccchhhhhHHHHHh
Confidence 57889999964320 1133455555555555566 99999999887666665555566666644
No 159
>PRK00648 Maf-like protein; Reviewed
Probab=29.02 E-value=1e+02 Score=25.36 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=27.6
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|+++.+||.-+.- .+.+||.++|+...++.-
T Consensus 68 VI~aDTvV~~~g~ilgKP~~~~eA~~~L~~lsG~~h 103 (191)
T PRK00648 68 IITADTIVWYDGKVLGKPKDEEEAVEMLRTLSGKTH 103 (191)
T ss_pred EEEeCeEEEECCEEeCCCCCHHHHHHHHHHhCCCCe
Confidence 44568889999976654 679999999999877654
No 160
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=28.95 E-value=99 Score=25.14 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=27.7
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|+|+..||.-+.- .+.++|.++|+...++.-
T Consensus 63 iI~aDtvv~~~g~il~KP~~~~eA~~~L~~lsg~~h 98 (180)
T cd00555 63 VIGADTVVVLDGRILGKPKDREEAREMLKRLSGRTH 98 (180)
T ss_pred EEEecEEEEECCEEEcCCCCHHHHHHHHHHHcCCCc
Confidence 44568999999976655 679999999999877654
No 161
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=28.92 E-value=1e+02 Score=22.94 Aligned_cols=12 Identities=33% Similarity=0.756 Sum_probs=10.3
Q ss_pred cCCCCCCCEEEE
Q psy8436 48 DGRFHVGDELIK 59 (306)
Q Consensus 48 ~G~L~~GD~Il~ 59 (306)
+|.|+.||.|+.
T Consensus 24 ~GtL~~GD~Iv~ 35 (110)
T cd03703 24 DGTLREGDTIVV 35 (110)
T ss_pred CCeEecCCEEEE
Confidence 588999999974
No 162
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=28.75 E-value=34 Score=30.35 Aligned_cols=32 Identities=22% Similarity=0.531 Sum_probs=26.9
Q ss_pred eEEEEeCCCChhcccCCCCCCCEEEEECCEeCC
Q psy8436 34 YLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK 66 (306)
Q Consensus 34 i~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~ 66 (306)
+-+-.|.+.+||.++| +-+||-|+-+|+-++.
T Consensus 65 l~~lrv~~~~~~e~~~-~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 65 LEVLRVNPESPAEKAG-MVVGDYILGINEDPLR 96 (417)
T ss_pred hhheeccccChhHhhc-cccceeEEeecCCcHH
Confidence 3456788999999999 9999999999986553
No 163
>PRK14363 Maf-like protein; Provisional
Probab=28.69 E-value=1.1e+02 Score=25.62 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=27.4
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|+++.+||.-+.- .+.+||.++|+...++.-
T Consensus 64 vI~aDTVV~~~g~IlgKP~~~eeA~~~L~~lsG~~H 99 (204)
T PRK14363 64 VIGSDTVVVLDGNILGKPESLEEAKGMLKKLSGRWH 99 (204)
T ss_pred EEEeCeEEEECCEEcCCCCCHHHHHHHHHHHCCCCc
Confidence 44568888999976654 679999999999877653
No 164
>PRK04694 Maf-like protein; Reviewed
Probab=28.66 E-value=1e+02 Score=25.28 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=26.9
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|+|+.+||.-+.- .+.+||..+|+...++.-
T Consensus 67 vI~aDTvv~~~g~ilgKP~~~~eA~~~L~~lsG~~h 102 (190)
T PRK04694 67 VLGSDTEVVLGERVFGKPVDVDDAIAMLRALSGRTH 102 (190)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHHhCCCce
Confidence 34468888888876554 578999999999877653
No 165
>PRK14368 Maf-like protein; Provisional
Probab=28.59 E-value=97 Score=25.58 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=27.5
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|+|+.+||.-+.- .+.+||.++|+...++.-
T Consensus 68 vI~aDTvV~~~g~ilgKP~~~~eA~~~L~~lsG~~h 103 (193)
T PRK14368 68 FIGADTIVVCDGEIMGKPKDEADAVRMLKKLSGVPH 103 (193)
T ss_pred EEEeCcEEEECCEEecCCCCHHHHHHHHHHhCCCCc
Confidence 44568889999976654 689999999999877653
No 166
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=28.41 E-value=1e+02 Score=29.35 Aligned_cols=39 Identities=28% Similarity=0.518 Sum_probs=34.7
Q ss_pred cccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436 46 HRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84 (306)
Q Consensus 46 ~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v 84 (306)
-..|.+..||+++=|+++-..+-+..++++++++.|..|
T Consensus 385 ~ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V 423 (477)
T PRK05500 385 LIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNV 423 (477)
T ss_pred eEecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEE
Confidence 345678999999999999999999999999999987664
No 167
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=28.36 E-value=48 Score=25.30 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=27.0
Q ss_pred CChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCC
Q psy8436 42 GGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDS 82 (306)
Q Consensus 42 gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~ 82 (306)
|.+..-+-++++|+.|++|.| .+.+.|..+|+.+..
T Consensus 87 G~~~~~varV~~G~ilfEi~~-----~~~~~a~~al~~a~~ 122 (126)
T TIGR01164 87 GNPEYWVAVVKPGKILFEIAG-----VPEEVAREAFRLAAS 122 (126)
T ss_pred CCCCEEEEEECCCCEEEEEeC-----CCHHHHHHHHHHHHh
Confidence 444444556999999999998 367888888887643
No 168
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=28.30 E-value=1e+02 Score=25.29 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=32.2
Q ss_pred CCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436 50 RFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84 (306)
Q Consensus 50 ~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v 84 (306)
.+..||++|=|++.--.+-|...++++++++|..|
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~v 147 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKV 147 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEE
Confidence 48899999999999999999999999999997764
No 169
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=28.26 E-value=72 Score=26.53 Aligned_cols=36 Identities=11% Similarity=0.215 Sum_probs=29.9
Q ss_pred CCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCc
Q psy8436 267 EKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQS 302 (306)
Q Consensus 267 G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~ 302 (306)
|...+|++++-|+++-..|-+..+|++.|++.....
T Consensus 107 G~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V 142 (201)
T COG0461 107 GGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEV 142 (201)
T ss_pred ecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeE
Confidence 446689999999999999999999999999876543
No 170
>PRK04425 Maf-like protein; Reviewed
Probab=28.14 E-value=1.1e+02 Score=25.34 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=27.4
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|+++.++|.-+.- .++++|..+|+...++.-
T Consensus 68 vI~aDTvV~~~g~ilgKP~~~eeA~~~L~~lsg~~h 103 (196)
T PRK04425 68 IVGADQVAWCDGRQWGKPMNLANAQKMLMHLSGREI 103 (196)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHHhCCCcE
Confidence 44568888999976554 689999999999877654
No 171
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=28.14 E-value=37 Score=23.49 Aligned_cols=22 Identities=23% Similarity=0.125 Sum_probs=14.3
Q ss_pred CCEeCCCCCHHHHHHHHhhcCC
Q psy8436 279 NGVPLENKTHAEAIAMFKDIFP 300 (306)
Q Consensus 279 NG~~v~~~~~~eav~~Lk~~~~ 300 (306)
..+.+.|+|.+|+.+.|++.-.
T Consensus 47 G~v~v~G~T~~e~~~~I~~~l~ 68 (82)
T PF02563_consen 47 GPVKVAGLTLEEAEEEIKQRLQ 68 (82)
T ss_dssp EEEE-TT--HHHHHHHHHHHHT
T ss_pred ceEEECCCCHHHHHHHHHHHHH
Confidence 3457889999999999987533
No 172
>PLN02293 adenine phosphoribosyltransferase
Probab=28.05 E-value=1.2e+02 Score=24.88 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=32.5
Q ss_pred CCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436 49 GRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84 (306)
Q Consensus 49 G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v 84 (306)
|.+..|++++=|++.--.+-|...++++++++|..+
T Consensus 120 ~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~ 155 (187)
T PLN02293 120 GAVEPGERALVIDDLIATGGTLCAAINLLERAGAEV 155 (187)
T ss_pred CccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEE
Confidence 458899999999999999999999999999997753
No 173
>PRK14362 Maf-like protein; Provisional
Probab=28.05 E-value=1.2e+02 Score=25.45 Aligned_cols=35 Identities=20% Similarity=0.474 Sum_probs=27.8
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|.|+.+||.-+.- .+.+||..+|+...++.-
T Consensus 76 VI~ADTvV~~~g~ilgKP~~~eeA~~~L~~lsG~~H 111 (207)
T PRK14362 76 VIAADTVVALDGMILGKPADRADALSMLRRLAGRTH 111 (207)
T ss_pred EEEeCeEEEeCCEEcCCCCCHHHHHHHHHHhCCCce
Confidence 44568889999976654 689999999999887754
No 174
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=28.04 E-value=71 Score=26.66 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=31.5
Q ss_pred CCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCc
Q psy8436 267 EKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQS 302 (306)
Q Consensus 267 G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~ 302 (306)
|.+..|++++=|+++-..|-|..+++++|++.....
T Consensus 113 g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~v 148 (206)
T PRK13809 113 GLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVV 148 (206)
T ss_pred cccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEE
Confidence 447899999999999999999999999999886554
No 175
>PRK00032 Maf-like protein; Reviewed
Probab=27.98 E-value=1.1e+02 Score=25.22 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=27.0
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|+|+.+||.-+.- .+.+||..+|+...++.-
T Consensus 66 vI~aDTvV~~~g~IlgKP~~~eeA~~~L~~lsG~~h 101 (190)
T PRK00032 66 VLGADTIVVLDGEVLEKPRDAADAAAMLRALSGRTH 101 (190)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHHhCCCCc
Confidence 34468888888876554 689999999999877653
No 176
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=27.58 E-value=42 Score=25.45 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=25.9
Q ss_pred EEEEEcCCChhhhcCCCCCCCEEEEECCEeCC
Q psy8436 253 FVKTIFQSGQAAENEKLREGDEIIAINGVPLE 284 (306)
Q Consensus 253 ~V~~V~~~g~A~~~G~L~~GD~Il~VNG~~v~ 284 (306)
.+..|-.+.++..+- -+.|++||.++|.++.
T Consensus 49 C~agvg~gv~~l~~~-arsgrrIlalDGCp~~ 79 (135)
T COG4273 49 CTAGVGAGVPALVDA-ARSGRRILALDGCPLR 79 (135)
T ss_pred eeecccCCcHHHHHH-hhcCCceEEecCChHH
Confidence 567777888888765 8999999999998875
No 177
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=27.55 E-value=59 Score=26.72 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCce
Q psy8436 268 KLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 268 ~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~ 303 (306)
.+.+||+++=|+++-..|-|...+++++++.....+
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vv 148 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVA 148 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEE
Confidence 378999999999999999999999999998876543
No 178
>PRK14365 Maf-like protein; Provisional
Probab=27.45 E-value=1.1e+02 Score=25.26 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=27.5
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|+|+.++|.-+.- .+++||.++|+...++.-
T Consensus 66 vI~aDTvV~~~g~Il~KP~~~~eA~~~L~~lsg~~h 101 (197)
T PRK14365 66 IISADTSVFCNGEVLGKPASPENAEEMLEKLSGRKF 101 (197)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHHHCCCce
Confidence 44568888999976654 689999999999877654
No 179
>PLN02293 adenine phosphoribosyltransferase
Probab=27.42 E-value=72 Score=26.13 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=32.4
Q ss_pred CCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCce
Q psy8436 267 EKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 267 G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~ 303 (306)
|.+..|++++=|+++-..|-|...+++++++.....+
T Consensus 120 ~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v 156 (187)
T PLN02293 120 GAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVV 156 (187)
T ss_pred CccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEE
Confidence 3488999999999999999999999999999876543
No 180
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=27.39 E-value=52 Score=24.42 Aligned_cols=38 Identities=24% Similarity=0.208 Sum_probs=28.3
Q ss_pred CChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCe
Q psy8436 42 GGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSH 83 (306)
Q Consensus 42 gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~ 83 (306)
|++....-++++|+.|+++.|.+- .+.+...|+.+...
T Consensus 67 G~~~~~~a~v~~G~iifEi~~~~~----~~~~~~alk~a~~K 104 (112)
T cd01433 67 GKPEGWVARVKPGQILFEVRGVPE----EEVAKEALRRAAKK 104 (112)
T ss_pred CCccEEEEEECCCCEEEEEeCcCc----HHHHHHHHHHhhcc
Confidence 445555556899999999999875 67888888877443
No 181
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=27.27 E-value=47 Score=25.26 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=16.0
Q ss_pred EcCCChhhhcCCCCCCCEEEEEC
Q psy8436 257 IFQSGQAAENEKLREGDEIIAIN 279 (306)
Q Consensus 257 V~~~g~A~~~G~L~~GD~Il~VN 279 (306)
|.-+|+||+. .++||+|+=+.
T Consensus 69 I~lNGAAAr~--~~~GD~vII~a 89 (126)
T PRK05449 69 ICLNGAAARL--VQVGDLVIIAA 89 (126)
T ss_pred EEeCCHHHhc--CCCCCEEEEEE
Confidence 4457999885 79999988554
No 182
>PRK14366 Maf-like protein; Provisional
Probab=27.21 E-value=1.1e+02 Score=25.27 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=27.0
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|+|+..||.-+.- .+++||.++|+...++..
T Consensus 69 vI~ADTvV~~~g~ilgKP~~~eeA~~mL~~lsG~~h 104 (195)
T PRK14366 69 VLGADTVVCCGRRILLKAETEEQAEEYLELLSGRRH 104 (195)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHHhCCCCc
Confidence 44468888888876654 689999999999877654
No 183
>PRK01839 Maf-like protein; Reviewed
Probab=27.19 E-value=1.1e+02 Score=25.65 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=27.6
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|.|+.+||.-+.- .+.+||.++|+...++.-
T Consensus 84 vI~aDTvV~~~g~IlgKP~~~eeA~~~L~~lsg~~h 119 (209)
T PRK01839 84 VLVADTTVTIDGAILGKPADAADALAMLTRLAGRTH 119 (209)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHHhCCCCc
Confidence 44568899999976654 689999999999877653
No 184
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=27.18 E-value=1.3e+02 Score=24.38 Aligned_cols=37 Identities=30% Similarity=0.510 Sum_probs=33.1
Q ss_pred cCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436 48 DGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84 (306)
Q Consensus 48 ~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v 84 (306)
.|.+..|++++=|++.--.+-|...++++++++|..|
T Consensus 101 ~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~v 137 (176)
T PRK13812 101 EGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATV 137 (176)
T ss_pred EecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeE
Confidence 4568899999999999999999999999999997653
No 185
>PRK02141 Maf-like protein; Reviewed
Probab=27.07 E-value=1.1e+02 Score=25.49 Aligned_cols=35 Identities=17% Similarity=0.380 Sum_probs=27.5
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|.|+.+||.-+.- .+.+||.++|+...++.-
T Consensus 75 VI~aDTvV~~~g~ilgKP~~~~eA~~mL~~lsG~~H 110 (207)
T PRK02141 75 VIGSDQVATFDGLQIGKPGTHERALAQLQAMRGRTV 110 (207)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHHhCCCce
Confidence 34568888999976654 689999999999887654
No 186
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=26.84 E-value=64 Score=21.62 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=23.0
Q ss_pred CCCCCEEEEECCEeCCCCCHHHHHHHHh
Q psy8436 51 FHVGDELIKVNDKRLKGLTIQEAREALN 78 (306)
Q Consensus 51 L~~GD~Il~VNG~~l~~~~~~~a~~~l~ 78 (306)
+++||.+|-=.|.-++-++-++|...+.
T Consensus 38 v~~Gd~VLVHaG~Ai~~ideeeA~e~l~ 65 (68)
T PF01455_consen 38 VKVGDYVLVHAGFAIEKIDEEEAEETLD 65 (68)
T ss_dssp B-TT-EEEEETTEEEEEE-HHHHHHHHH
T ss_pred CCCCCEEEEecChhheeCCHHHHHHHHH
Confidence 9999999999999999999999988775
No 187
>PTZ00173 60S ribosomal protein L10; Provisional
Probab=26.51 E-value=1.1e+02 Score=25.57 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=29.8
Q ss_pred CCCCCCEEEEECCEeCCCCCHHHHHHHHhcC----CCeEEEEEEeC
Q psy8436 50 RFHVGDELIKVNDKRLKGLTIQEAREALNNK----DSHVEIVICRN 91 (306)
Q Consensus 50 ~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~----~~~v~L~v~r~ 91 (306)
++++|+.|++|.+.++ +.+.|...|+.+ +....+++...
T Consensus 128 rVk~Gqiifei~~~~~---~~~~AkeALrrA~~KlP~~~kIv~~~~ 170 (213)
T PTZ00173 128 RVRIGQILLSIRTKEA---YVPQAIEALRRAKYKFPGRQKIVVSNK 170 (213)
T ss_pred EECcCCEEEEEecccC---CHHHHHHHHHHhcccCCCeEEEEEecc
Confidence 4799999999988765 578888888877 44566666543
No 188
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=26.50 E-value=75 Score=25.54 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=31.3
Q ss_pred CCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCce
Q psy8436 268 KLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 268 ~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~~ 303 (306)
.+..|++++=|+++--.|-|..+|+++|++.....+
T Consensus 104 ~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~ 139 (173)
T TIGR00336 104 ELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVA 139 (173)
T ss_pred CCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEE
Confidence 478999999999999999999999999998865443
No 189
>PRK00884 Maf-like protein; Reviewed
Probab=25.75 E-value=1.3e+02 Score=24.90 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=27.5
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|.|+.+||.-+.- .+.+||.++|+...++.-
T Consensus 65 VI~aDTvV~~~g~ilgKP~~~eeA~~~L~~lsG~~h 100 (194)
T PRK00884 65 IIGSDQVCVLDGEITGKPLTEENARAQLRKASGNIV 100 (194)
T ss_pred EEEeCeEEEECCEEecCCCCHHHHHHHHHHHCCCce
Confidence 44568899999976654 679999999999877654
No 190
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=25.63 E-value=1.3e+02 Score=24.15 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=32.3
Q ss_pred CCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436 49 GRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84 (306)
Q Consensus 49 G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v 84 (306)
|.+..|+++|=|++.--.+-|...++++|+++|..|
T Consensus 103 g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v 138 (173)
T TIGR00336 103 GELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQV 138 (173)
T ss_pred cCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeE
Confidence 458899999999999999999999999999997654
No 191
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=25.60 E-value=55 Score=29.10 Aligned_cols=30 Identities=40% Similarity=0.552 Sum_probs=22.9
Q ss_pred hhhhcCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy8436 262 QAAENEKLREGDEIIAINGVPLENKTHAEAIA 293 (306)
Q Consensus 262 ~A~~~G~L~~GD~Il~VNG~~v~~~~~~eav~ 293 (306)
.++.-|-||+||.+|.|-|.+-. |.+|++-
T Consensus 97 ~~aLfg~LRpgDell~i~G~PYD--TLeevIG 126 (416)
T COG4100 97 ACALFGILRPGDELLYITGSPYD--TLEEVIG 126 (416)
T ss_pred HHHHHhccCCCCeEEEecCCcch--hHHHHhc
Confidence 45566889999999999998864 4466554
No 192
>PRK01441 Maf-like protein; Reviewed
Probab=25.48 E-value=1.3e+02 Score=25.05 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=27.5
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|+|+.+||.-+.- .+.+||.++|+...++.-
T Consensus 75 vI~aDTvV~~~g~il~KP~~~~eA~~~L~~lsG~~h 110 (207)
T PRK01441 75 ILAADTVVAVGRRILPKAELVDEASQCLRLLSGRNH 110 (207)
T ss_pred EEecCEEEEECCEEcCCCCCHHHHHHHHHHHCCCce
Confidence 44568999999976654 579999999999877653
No 193
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=25.31 E-value=49 Score=24.95 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=16.9
Q ss_pred EcCCChhhhcCCCCCCCEEEEECC
Q psy8436 257 IFQSGQAAENEKLREGDEIIAING 280 (306)
Q Consensus 257 V~~~g~A~~~G~L~~GD~Il~VNG 280 (306)
|.-+|+|++. .++||+++=+.=
T Consensus 68 I~lNGAAArl--~~~GD~VII~sy 89 (126)
T COG0853 68 ICLNGAAARL--VQVGDLVIIMSY 89 (126)
T ss_pred EEechHHHhh--CCCCCEEEEEEc
Confidence 4458999986 699999886554
No 194
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=25.00 E-value=54 Score=24.88 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=16.1
Q ss_pred EcCCChhhhcCCCCCCCEEEEEC
Q psy8436 257 IFQSGQAAENEKLREGDEIIAIN 279 (306)
Q Consensus 257 V~~~g~A~~~G~L~~GD~Il~VN 279 (306)
|.-+|+||+. .++||+|+=+.
T Consensus 69 I~lNGAAArl--~~~GD~VII~s 89 (126)
T TIGR00223 69 ICVNGAAARC--VSVGDIVIIAS 89 (126)
T ss_pred EEeCCHHHhc--CCCCCEEEEEE
Confidence 4457999875 79999988554
No 195
>KOG1703|consensus
Probab=24.96 E-value=23 Score=33.78 Aligned_cols=72 Identities=19% Similarity=0.350 Sum_probs=60.6
Q ss_pred ceeEEEEecCCCCcCCCeEEEEeCCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeEEEEEEeCC
Q psy8436 17 ELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNP 92 (306)
Q Consensus 17 ~lG~~i~gg~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v~L~v~r~~ 92 (306)
.+||.+.+++-. ..+-|..+++++-++... +..+|.|..++|..-..+.|.++..-.+.++....+.+.|..
T Consensus 9 ~~~~r~~~~~~~---~~l~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 80 (479)
T KOG1703|consen 9 PWGFRLQGGDFL---QPLRILRVTPGGKAADAE-LDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQLALTLSRSE 80 (479)
T ss_pred Cceeeecccccc---cccceeccCCCCcccccc-ccccccccccccccccccccccccCccccccccccccccccc
Confidence 566666554222 347899999999999888 999999999999999999999999999999888999988854
No 196
>PRK00234 Maf-like protein; Reviewed
Probab=24.62 E-value=1.5e+02 Score=24.47 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=27.2
Q ss_pred CCCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCce
Q psy8436 269 LREGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSS 303 (306)
Q Consensus 269 L~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~ 303 (306)
+--.|+|+.+||.-+.- .+.++|.++|+...++.-
T Consensus 65 vI~aDTvV~~~g~Il~KP~~~~eA~~mL~~lsG~~h 100 (192)
T PRK00234 65 IIGSDQVAVLGGQILGKPHTFERAREQLLAASGQSV 100 (192)
T ss_pred EEEeCeEEEeCCEECCCCCCHHHHHHHHHHHCCCcE
Confidence 44568889899976654 689999999999876654
No 197
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=24.60 E-value=60 Score=26.21 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=22.6
Q ss_pred CCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436 267 EKLREGDEIIAINGVPLENKTHAEAIAMFKDIF 299 (306)
Q Consensus 267 G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~ 299 (306)
.++++|+.|++|.++.. +.+.|.+.|+.+.
T Consensus 124 a~Vk~G~ilfei~~~~~---~~~~akeAlr~a~ 153 (172)
T PRK04199 124 ARVEKGQKIFTVRVNPE---HLEAAKEALRRAA 153 (172)
T ss_pred EEECcCCEEEEEEecCC---CHHHHHHHHHHhh
Confidence 35899999999987543 4577888887653
No 198
>KOG1712|consensus
Probab=23.49 E-value=3.8e+02 Score=21.56 Aligned_cols=51 Identities=24% Similarity=0.191 Sum_probs=39.9
Q ss_pred eEEEEeCCCC---hhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436 34 YLISHIEPGG---AIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84 (306)
Q Consensus 34 i~V~~V~~gs---~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v 84 (306)
++++-..+.| -.-+.|.++.|++++-|++.--.+-|..-|.+++.+.+..|
T Consensus 99 i~~~Y~lEYg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~v 152 (183)
T KOG1712|consen 99 ISESYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEV 152 (183)
T ss_pred eEEEEeeecCccceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEE
Confidence 4455445544 33445669999999999999999999999999999987654
No 199
>KOG3369|consensus
Probab=23.33 E-value=46 Score=26.77 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=22.5
Q ss_pred hcccCCCCCCCEEEEECCEeCCCCCHHH
Q psy8436 45 IHRDGRFHVGDELIKVNDKRLKGLTIQE 72 (306)
Q Consensus 45 A~~~G~L~~GD~Il~VNG~~l~~~~~~~ 72 (306)
+.++| +++|..+.+|||.++.+.....
T Consensus 47 ~~kdg-ik~~~~~~~vNg~~v~g~~~~~ 73 (199)
T KOG3369|consen 47 GSKDG-IKVGHLVQAVNGENVNGYILYD 73 (199)
T ss_pred ecccc-cchhheeeeecccccccceecc
Confidence 46788 9999999999999998765443
No 200
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=22.81 E-value=58 Score=29.80 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=12.0
Q ss_pred cCCCCCCCEEEEECCEeCC
Q psy8436 48 DGRFHVGDELIKVNDKRLK 66 (306)
Q Consensus 48 ~G~L~~GD~Il~VNG~~l~ 66 (306)
-|.|++||++|+|.|.+-.
T Consensus 90 fg~LrpGD~ll~~tG~PYD 108 (403)
T PF06838_consen 90 FGVLRPGDELLSITGKPYD 108 (403)
T ss_dssp HHH--TT-EEEESSSS--C
T ss_pred HhcCCCCCeEEEcCCCchh
Confidence 3569999999999998776
No 201
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=22.77 E-value=96 Score=29.58 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=33.2
Q ss_pred hcCCCCCCCEEEEECCEeCCCCCHHHHHHHHhhcCCCc
Q psy8436 265 ENEKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQS 302 (306)
Q Consensus 265 ~~G~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~~~~ 302 (306)
..|.+.+||+++=|+++-..|-|..+++++|++.....
T Consensus 386 ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V 423 (477)
T PRK05500 386 IEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNV 423 (477)
T ss_pred EecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEE
Confidence 34668899999999999999999999999999986543
No 202
>PF02545 Maf: Maf-like protein; InterPro: IPR003697 Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea. The Maf protein shares substantial amino acid sequence identity with the Escherichia coli OrfE protein [].; GO: 0005737 cytoplasm; PDB: 2P5X_A 1EXC_B 1EX2_A.
Probab=22.35 E-value=88 Score=25.82 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=26.6
Q ss_pred CCCCEEEEECCEeCCC-CCHHHHHHHHhhcCCCcee
Q psy8436 270 REGDEIIAINGVPLEN-KTHAEAIAMFKDIFPQSSK 304 (306)
Q Consensus 270 ~~GD~Il~VNG~~v~~-~~~~eav~~Lk~~~~~~~~ 304 (306)
--.|+|+.+||.-+.- .+.+||.++|+...++.-.
T Consensus 68 i~aDTvv~~~g~Il~KP~~~eeA~~~L~~lsg~~h~ 103 (195)
T PF02545_consen 68 IGADTVVVCDGEILGKPKDEEEAREMLKSLSGKTHQ 103 (195)
T ss_dssp EEEEEEEECTTEEE-S-SSHHHHHHHHHHHTTSEEE
T ss_pred EEEeeeeeeeeEEEeCCCCHHHHHHHHHhhCCCcEE
Confidence 3458888888887665 6899999999998876543
No 203
>CHL00044 rpl16 ribosomal protein L16
Probab=22.34 E-value=56 Score=25.29 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=20.6
Q ss_pred CCCCCCEEEEECCEeCCCCCHHHHHHHHhhcC
Q psy8436 268 KLREGDEIIAINGVPLENKTHAEAIAMFKDIF 299 (306)
Q Consensus 268 ~L~~GD~Il~VNG~~v~~~~~~eav~~Lk~~~ 299 (306)
++++|+.|+||.|++ .+.|.+.|+.+.
T Consensus 96 ~V~~G~ilfEi~g~~-----~~~ak~al~~a~ 122 (135)
T CHL00044 96 VVKPGRILYEMGGVS-----ETIARAAIKIAA 122 (135)
T ss_pred EECCCcEEEEEeCCC-----HHHHHHHHHHHh
Confidence 489999999999854 357777776543
No 204
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=21.94 E-value=90 Score=23.84 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=18.2
Q ss_pred EEEEEEcCCChhhhcCCCCCCCEEEE
Q psy8436 252 IFVKTIFQSGQAAENEKLREGDEIIA 277 (306)
Q Consensus 252 i~V~~V~~~g~A~~~G~L~~GD~Il~ 277 (306)
-||-++. .|.+++.| +++||++--
T Consensus 96 ~yvLEl~-~G~~~~~~-i~vGd~v~~ 119 (126)
T COG1430 96 RYVLELP-AGWAARLG-IKVGDRVEF 119 (126)
T ss_pred cEEEEec-CCchhhcC-CccCCEEEe
Confidence 4888875 56666677 999999864
No 205
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=21.20 E-value=88 Score=17.91 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=10.9
Q ss_pred CCCCHHHHHHHHhh
Q psy8436 284 ENKTHAEAIAMFKD 297 (306)
Q Consensus 284 ~~~~~~eav~~Lk~ 297 (306)
-+++.++||+.|-.
T Consensus 21 l~LtpEDAvEaLi~ 34 (35)
T PF08383_consen 21 LGLTPEDAVEALIG 34 (35)
T ss_pred cCCCHHHHHHHHhc
Confidence 36889999998854
No 206
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=20.35 E-value=2.1e+02 Score=23.41 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=31.4
Q ss_pred CCCCCEEEEECCEeCCCCCHHHHHHHHhcCCCeE
Q psy8436 51 FHVGDELIKVNDKRLKGLTIQEAREALNNKDSHV 84 (306)
Q Consensus 51 L~~GD~Il~VNG~~l~~~~~~~a~~~l~~~~~~v 84 (306)
+..|+++|=|++.--.+-|...+++++++++..+
T Consensus 111 ~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~v 144 (187)
T PRK12560 111 IEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIV 144 (187)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEE
Confidence 7899999999999999999999999999997764
No 207
>cd04459 Rho_CSD Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA are released from DNA template by an mRNA stem loop structure, which resembles the transcription termination mechanism used by eukaryotic pol III. The second mechanism is mediated by Rho factor. Rho factor terminates transcription by using energy from ATP hydrolysis to forcibly dissociate the transcripts from RNA polymerase. Rho protein contains an N-terminal S1-like domain, which binds single-stranded RNA. Rho has a C-terminal ATPase domain which hydrolyzes ATP to provide energy to strip RNA polymerase and mRNA from the DNA template. Rho functions as a homohexamer.
Probab=20.21 E-value=1.7e+02 Score=19.65 Aligned_cols=40 Identities=28% Similarity=0.455 Sum_probs=23.7
Q ss_pred CcccEEEEcCCCCCCCCCcEEEEEEcCCChhhhcCCCCCCCEEEE
Q psy8436 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277 (306)
Q Consensus 233 ~~lG~~l~gg~~~~~~~~gi~V~~V~~~g~A~~~G~L~~GD~Il~ 277 (306)
+++||--....+...+..=+||.. +..-+-| ||.||.|.-
T Consensus 10 ~g~GFLR~~~~~y~~~~~DvyVs~----~~Irr~~-LR~GD~V~G 49 (68)
T cd04459 10 DGFGFLRSSGYNYLPGPDDIYVSP----SQIRRFN-LRTGDTVVG 49 (68)
T ss_pred CCceEEecCCcCCCCCCCCEEECH----HHHHHhC-CCCCCEEEE
Confidence 357875543332222223477743 5566666 999999874
Done!