RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8436
(306 letters)
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 113 bits (284), Expect = 2e-31
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 195 HNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFV 254
H+ S+ + + TV +KGP SLG SI GG SP G++ IF+
Sbjct: 5 HHHSSGVDLGTENLYFQSM------GLRTVEMKKGPT-DSLGISIAGGVGSPLGDVPIFI 57
Query: 255 KTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
+ +G AA+ +KLR GD I+ I G E TH +A+ + K
Sbjct: 58 AMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLK 99
Score = 68.2 bits (167), Expect = 1e-14
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Query: 2 EKQFKVFRVVKDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
+ + K ++ LGI I P I+ + P G + + VGD ++ +
Sbjct: 22 SMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTI 81
Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSA 98
+G+T +A L N +E+ + D ++++
Sbjct: 82 CGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSETS 119
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 112 bits (283), Expect = 2e-31
Identities = 42/102 (41%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 195 HNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFV 254
H+ S+ + P+ ++T ++GP LGFSIVGG SP G+L I+V
Sbjct: 5 HHHSSGVDLGTENLYFQSMPQ-----CKSITLERGP--DGLGFSIVGGYGSPHGDLPIYV 57
Query: 255 KTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
KT+F G A+E+ +L+ GD+IIA+NG LE TH EA+A+ K
Sbjct: 58 KTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILK 99
Score = 63.1 bits (154), Expect = 7e-13
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 14 DSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQE 72
+ LG I P + + GA DGR GD++I VN + L+G+T +E
Sbjct: 34 GPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEE 93
Query: 73 AREALNNKDSHVEIVICRNPD 93
A L V +++ + +
Sbjct: 94 AVAILKRTKGTVTLMVLSSDE 114
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 111 bits (280), Expect = 7e-31
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 194 DHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIF 253
D N S +A ++ + V + ++ TVT +K LGFS+ GG+ S G+ +
Sbjct: 3 DLNSSTDSAASASAASDVSVESTAEATVCTVTLEKMSA--GLGFSLEGGKGSLHGDKPLT 60
Query: 254 VKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
+ IF+ + ++E ++ GDEI+ + G ++ T EA + K
Sbjct: 61 INRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIK 103
Score = 64.1 bits (156), Expect = 5e-13
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 10 VVKDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
++ S LG +E + P I+ I G A + GDE++++ ++GL
Sbjct: 34 TLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGL 93
Query: 69 TIQEAREAL-NNKDSHVEIVICRNPDDAKSAT 99
T EA + D V IVI R +K T
Sbjct: 94 TRFEAWNIIKALPDGPVTIVIRRKSLQSKETT 125
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 107 bits (270), Expect = 2e-29
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 194 DHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIF 253
H+ S V N K V QK PG +SLG ++ GG + +L I+
Sbjct: 5 HHHSSGVDLGTENLYFQSMHEK-------VVNIQKDPG-ESLGMTVAGGASHREWDLPIY 56
Query: 254 VKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
V ++ G + + +++ GD ++ ++GV L + +EA+A+ K
Sbjct: 57 VISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLK 99
Score = 68.6 bits (168), Expect = 1e-14
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 2 EKQFKVFRVVKDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
KV + KD LG+ + P + +EPGG I RDGR GD L+ V
Sbjct: 22 SMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNV 81
Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDA 95
+ L ++ EA L S + + + +
Sbjct: 82 DGVELTEVSRSEAVALLKRTSSSIVLKALEVKEGS 116
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 106 bits (267), Expect = 3e-29
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
+F V K SLG S+ GG ++ + GI+VK + G A + ++ +GD ++A+NG
Sbjct: 6 IFEVELAKNDN--SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 63
Query: 281 VPLENKTHAEAIAMFK 296
V LE TH +A+ +
Sbjct: 64 VSLEGATHKQAVETLR 79
Score = 67.2 bits (165), Expect = 2e-14
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 6 KVFRVV-KDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
+F V + N LGI + + + + P GA DGR H GD ++ VN
Sbjct: 5 DIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV 64
Query: 64 RLKGLTIQEAREALNNKDSHVEIVICRNPD 93
L+G T ++A E L N V +++ +
Sbjct: 65 SLEGATHKQAVETLRNTGQVVHLLLEKGQS 94
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 107 bits (269), Expect = 3e-29
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Query: 195 HNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFV 254
H+ + N + +KG + LGFSI + G+ I+V
Sbjct: 5 HHHHHHHHGSENLYFQGSYNTKKIGKRLNIQLKKGT--EGLGFSITSRDVTIGGSAPIYV 62
Query: 255 KTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
K I G A ++ +L+ GD +I +NGV L K+ E +++ +
Sbjct: 63 KNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRST 106
Score = 61.3 bits (149), Expect = 4e-12
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 2 EKQFKVFRVV-KDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
+K K + K + LG I R +P + +I P GA +DGR GD LI+
Sbjct: 26 KKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIE 85
Query: 60 VNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD 93
VN L G + +E L + + V +++ R D
Sbjct: 86 VNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQED 121
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 106 bits (266), Expect = 5e-29
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+ +KG + LGFSI + G+ I+VK I G A ++ +L+ GD +I +NGV
Sbjct: 13 LNIQLKKGT--EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGV 70
Query: 282 PLENKTHAEAIAMFKDI 298
L K+ E +++ +
Sbjct: 71 DLAGKSQEEVVSLLRST 87
Score = 63.1 bits (154), Expect = 7e-13
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 2 EKQFKVFRVV-KDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
+K K + K + LG I R +P + +I P GA +DGR GD LI+
Sbjct: 7 KKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIE 66
Query: 60 VNDKRLKGLTIQEAREALNN--KDSHVEIVICRNPD 93
VN L G + +E L + + V +++ R +
Sbjct: 67 VNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEE 102
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 105 bits (264), Expect = 6e-29
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEI 275
S+++ V KGP K LGFSI GG + G+ I++ I + G A ++ +L+ GD +
Sbjct: 1 SMTIMEVNLLKGP--KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRL 58
Query: 276 IAINGVPLENKTHAEAIAMFK 296
+A+N L++ H EA+A K
Sbjct: 59 LAVNNTNLQDVRHEEAVASLK 79
Score = 62.3 bits (152), Expect = 9e-13
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 5 FKVFRVV-KDDSNELGIYIERQDGGAHFSPYL------ISHIEPGGAIHRDGRFHVGDEL 57
+ V LG I GG I+ I GGA +DGR +GD L
Sbjct: 2 MTIMEVNLLKGPKGLGFSIA---GGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRL 58
Query: 58 IKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
+ VN+ L+ + +EA +L N V + + +
Sbjct: 59 LAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 105 bits (263), Expect = 1e-28
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
FTV ++GP LG ++ G + G G++++T+ AA + +L GD I+ +NG
Sbjct: 10 FTVELERGP--SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGS 67
Query: 282 PLENKTHAEAIAMFK 296
L + A+ + +
Sbjct: 68 SLLGLGYLRAVDLIR 82
Score = 67.0 bits (164), Expect = 3e-14
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 6 KVFRVV-KDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
VF V + + LG+ + I + PG DGR +GD +++VN
Sbjct: 8 YVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGS 67
Query: 64 RLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATN 100
L GL A + + + + ++ ++ + +
Sbjct: 68 SLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIH 104
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 114 bits (285), Expect = 2e-28
Identities = 64/330 (19%), Positives = 109/330 (33%), Gaps = 40/330 (12%)
Query: 2 EKQFKVFRVVKDDSNE-LGIYI---ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDEL 57
E + + + + N LG I I+ I PGGA +DGR V D +
Sbjct: 55 EGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 114
Query: 58 IKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNII 117
+ VN+ ++ +T A EAL S V + + R A+ ++
Sbjct: 115 LFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGG 174
Query: 118 INQR---------QKNIVEKSLMPERQVSMPE---IERNKTEVIATTQVSNEKSQTSNCS 165
+ + I+E + + N + + +
Sbjct: 175 VGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYD 234
Query: 166 KIRNKVTGMRKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMF--- 222
+ KV P S H + ++ + S +
Sbjct: 235 VVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPV 294
Query: 223 ---------------TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENE 267
+ +G LGF+IVGG D GIF+ I G A +
Sbjct: 295 AKDLLGEEDIPREPRRIVIHRGST--GLGFNIVGGEDGE----GIFISFILAGGPADLSG 348
Query: 268 KLREGDEIIAINGVPLENKTHAEAIAMFKD 297
+LR+GD+I+++NGV L N +H +A K+
Sbjct: 349 ELRKGDQILSVNGVDLRNASHEQAAIALKN 378
Score = 67.2 bits (163), Expect = 1e-12
Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 3/130 (2%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
V+ S LG I GG IS I GG G GD+++ VN L+ +
Sbjct: 312 VIHRGSTGLGFNIV---GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 368
Query: 70 IQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKS 129
++A AL N V I+ P++ + + N
Sbjct: 369 HEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPKRGF 428
Query: 130 LMPERQVSMP 139
+
Sbjct: 429 YIRALFDYDK 438
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 104 bits (261), Expect = 4e-28
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 213 RPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREG 272
+ + + K P LGFS+VG R +G LGIFV+ I + A + +L+E
Sbjct: 13 KNMAQGRHVEVFELLKPPS-GGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKET 71
Query: 273 DEIIAINGVPL-ENKTHAEAIAMFK 296
D+I+AING L + TH +AI++ +
Sbjct: 72 DQILAINGQALDQTITHQQAISILQ 96
Score = 67.4 bits (165), Expect = 2e-14
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 2 EKQFKVFRVVKDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
+ +VF ++K S LG + + + I+ G HRDGR D+++ +
Sbjct: 18 GRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAI 77
Query: 61 NDKRL-KGLTIQEAREALNNKDSHVEIVICRNPD 93
N + L + +T Q+A L V++VI R
Sbjct: 78 NGQALDQTITHQQAISILQKAKDTVQLVIARGSL 111
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 104 bits (260), Expect = 5e-28
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 198 SNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTI 257
S + N +V + + + + ++ LGFS+V R G + IFVK +
Sbjct: 3 SGSSGLGNEDFNSVIQQMAQGRQIEYIDIERPST-GGLGFSVVALRSQNLGKVDIFVKDV 61
Query: 258 FQSGQAAENEKLREGDEIIAINGVPL-ENKTHAEAIAMFK 296
A +++L+E D+I+AIN PL +N +H +AIA+ +
Sbjct: 62 QPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQ 101
Score = 67.5 bits (165), Expect = 3e-14
Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 3 KQFKVFRVVKDDSNELGIYI-ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
+Q + + + + LG + + + ++PG RD R D+++ +N
Sbjct: 24 RQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAIN 83
Query: 62 DKRL-KGLTIQEAREALNNKDSHVEIVICRNPDDAKSAT 99
L + ++ Q+A L + +++ R P KS+T
Sbjct: 84 HTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSST 122
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 102 bits (257), Expect = 1e-27
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 195 HNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGI 252
H+ + ++ + + S+++ + KGP K LGFSI GG + G+ I
Sbjct: 2 HHHHHHSSGVDLGTENLYFQ---SMTVVEIKLFKGP--KGLGFSIAGGVGNQHIPGDNSI 56
Query: 253 FVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
+V I G A ++ +L+ GD ++ +N LE TH EA+A+ K
Sbjct: 57 YVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILK 100
Score = 61.6 bits (150), Expect = 3e-12
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 3 KQFKVFRVV-KDDSNELGIYI---ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELI 58
+ V + LG I + ++ I GGA +DGR VGD L+
Sbjct: 21 QSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLL 80
Query: 59 KVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
VN+ L+ +T +EA L N V + + +
Sbjct: 81 MVNNYSLEEVTHEEAVAILKNTSEVVYLKVGK 112
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 102 bits (255), Expect = 2e-27
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
+ TVT +K G +G SIV + + + LGI+VK++ + G A + +L GD++++++G
Sbjct: 12 IITVTLKKQNG---MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 281 VPLENKTHAEAIAMFK 296
L + A +
Sbjct: 69 RSLVGLSQERAAELMT 84
Score = 70.4 bits (173), Expect = 1e-15
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 2 EKQFKVFRVVKDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
K+ ++ V N +G+ I + G + + GGA DGR GD+L+ V
Sbjct: 7 HKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 66
Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVICR 90
+ + L GL+ + A E + S V + + +
Sbjct: 67 DGRSLVGLSQERAAELMTRTSSVVTLEVAK 96
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 102 bits (256), Expect = 2e-27
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAA 264
++ + ++ + +GP LGF+IVGG D + GI+V I ++G AA
Sbjct: 4 GSSGMNGRVDYLVTEEEINLTRGPS--GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAA 61
Query: 265 ENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
+ +L+EGD+I+++NG L+N H +A+ +F+
Sbjct: 62 LDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 93
Score = 59.4 bits (144), Expect = 2e-11
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 14 DSNELGIYI---ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
+ LG I Q ++ S +S I+ GA DGR GD+++ VN + LK L
Sbjct: 26 GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH 85
Query: 71 QEAREALNNKDSHVEIVICRNPDDAKS 97
Q+A + N V + +
Sbjct: 86 QDAVDLFRNAGYAVSLRVQHRLQVQNG 112
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 102 bits (255), Expect = 2e-27
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGN--LGIFVKTIFQSGQAAENEKLREGDEI 275
S+++V + SLG SI G RD GI+VK++ AA + ++ D+I
Sbjct: 10 GFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKI 69
Query: 276 IAINGVPLENKTHAEAIAMFK 296
+ ++ V ++ ++ + + +
Sbjct: 70 LRVDDVNVQGMAQSDVVEVLR 90
Score = 63.5 bits (155), Expect = 5e-13
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 10 VVKDDSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
+ D++ LGI I ++ G Y + + PG A DGR D++++V+D +
Sbjct: 19 FREKDTSSLGISISGMRDQSTTGEATGIY-VKSLIPGSAAALDGRIEPNDKILRVDDVNV 77
Query: 66 KGLTIQEAREALNNKDSHVEIVICR 90
+G+ + E L N + V +++ R
Sbjct: 78 QGMAQSDVVEVLRNAGNPVRLLLIR 102
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 102 bits (256), Expect = 2e-27
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 198 SNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKG-NLGIFVKT 256
S + + +S + G LG S+ G + G +LGIF+K+
Sbjct: 3 SGSSGLKGEPDCYALSLESSEQLTLEIPLND-SGSAGLGVSLKGNKSRETGTDLGIFIKS 61
Query: 257 IFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
I G A ++ +LR D++IA+NG L K++ EA+ +
Sbjct: 62 IIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLR 101
Score = 61.0 bits (148), Expect = 7e-12
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 15/96 (15%)
Query: 10 VVKDDSNELGIYIERQDGGAHFS-----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
+ S LG+ ++ G I I GGA +DGR + D+LI VN +
Sbjct: 31 LNDSGSAGLGVSLK---GNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGET 87
Query: 65 LKGLTIQEAREAL-------NNKDSHVEIVICRNPD 93
L G + EA E L N +++VI R
Sbjct: 88 LLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG 123
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 101 bits (254), Expect = 2e-27
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
+ +GP LGF+IVGG D + GI+V I ++G AA + +L+EGD+I+++N
Sbjct: 9 EEINLTRGPS--GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVN 66
Query: 280 GVPLENKTHAEAIAMFK 296
G L+N H +A+ +F+
Sbjct: 67 GQDLKNLLHQDAVDLFR 83
Score = 60.4 bits (147), Expect = 5e-12
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 14 DSNELGIYI---ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
+ LG I Q ++ S +S I+ GA DGR GD+++ VN + LK L
Sbjct: 16 GPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH 75
Query: 71 QEAREALNNKDSHVEIVICRNPD 93
Q+A + N V + + +
Sbjct: 76 QDAVDLFRNAGYAVSLRVQHRLE 98
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 101 bits (253), Expect = 4e-27
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
F+V +G G ++ GGRD G+ + V+ + + G A +L GD ++ ING
Sbjct: 13 FSVELVRGYA--GFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGE 69
Query: 282 PLENKTHAEAIAMFK 296
+ THA+A+ +
Sbjct: 70 STQGLTHAQAVERIR 84
Score = 63.8 bits (156), Expect = 3e-13
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 14 DSNELGIYIERQDGGAHFS---PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
G+ + GG + P + + G R GR VGD ++ +N + +GLT
Sbjct: 20 GYAGFGLTLG---GGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTH 76
Query: 71 QEAREALNNKDSHVEIVICRNPDDAKSA 98
+A E + + +VI R S
Sbjct: 77 AQAVERIRAGGPQLHLVIRRPLSGPSSG 104
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 101 bits (254), Expect = 4e-27
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 202 ATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSG 261
+ +S + L + + T +K GF+I+GG + + + VK++ G
Sbjct: 1 GSSGSSGLFTRDASQLKGTFLSTTLKKSN--MGFGFTIIGGDEP---DEFLQVKSVIPDG 55
Query: 262 QAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
AA++ K+ GD I+ IN V + THA+ + +F+ +
Sbjct: 56 PAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSV 92
Score = 60.5 bits (147), Expect = 7e-12
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 14 DSNELGIYIERQDGGAHFSPYL-ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQE 72
+ G I GG +L + + P G +DG+ GD ++ +N+ + G T +
Sbjct: 28 SNMGFGFTII---GGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHAD 84
Query: 73 AREALNN--KDSHVEIVICRNPDDAKSATNCDNLQPNP 108
+ + V +V+CR + N P+
Sbjct: 85 VVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPANSGPSS 122
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 100 bits (252), Expect = 5e-27
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
+ + KGP K LGFSI GG + G+ I+V I + G A ++ KL+ GD+++A+
Sbjct: 4 IMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 279 NGVPLENKTHAEAIAMFKD 297
N V LE TH EA+ K+
Sbjct: 62 NSVSLEEVTHEEAVTALKN 80
Score = 63.5 bits (155), Expect = 4e-13
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 1 MEKQFKVFRVVKDDSNELGIYIERQDGGAHF---SPYLISHIEPGGAIHRDGRFHVGDEL 57
MEK ++ + LG I G H + ++ I GGA H+DG+ +GD+L
Sbjct: 1 MEKIMEI--KLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKL 58
Query: 58 IKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD 93
+ VN L+ +T +EA AL N V + + +
Sbjct: 59 LAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTS 94
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 100 bits (251), Expect = 6e-27
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
+ ++G LGFSI GG D+P + GIF+ I G AA + +L D ++
Sbjct: 4 KYEEIVLERGNS--GLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLR 61
Query: 278 INGVPLENKTHAEAIAMFK 296
+N V + H+ A+ K
Sbjct: 62 VNEVDVSEVVHSRAVEALK 80
Score = 58.9 bits (143), Expect = 2e-11
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 10 VVKDDSNELGIYIERQDGGAHFS------PYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
V++ ++ LG I GG I+ I PGGA DGR V D +++VN+
Sbjct: 9 VLERGNSGLGFSIA---GGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEV 65
Query: 64 RLKGLTIQEAREALNNKDSHVEIVICRNPD 93
+ + A EAL V +V+ R
Sbjct: 66 DVSEVVHSRAVEALKEAGPVVRLVVRRRQP 95
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 100 bits (250), Expect = 1e-26
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGN------LGIFVKTIFQSGQAAENEKLREGD 273
+ + QK PG + LG SI GG GN GIF+ + +G A + +LR G
Sbjct: 9 GLRELCIQKAPG-ERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGL 67
Query: 274 EIIAINGVPLENKTHAEAIAMFK 296
++ +N L TH EA+ + +
Sbjct: 68 RLLEVNQQSLLGLTHGEAVQLLR 90
Score = 67.0 bits (164), Expect = 2e-14
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 4 QFKVFRVVKDDSNELGIYI-------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDE 56
+ + K LGI I IS + P GA RDGR VG
Sbjct: 9 GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLR 68
Query: 57 LIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSA 98
L++VN + L GLT EA + L + + +++C + S+
Sbjct: 69 LLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESGPSS 110
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 99.0 bits (247), Expect = 2e-26
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
+++ TVT LG SIVG + G+ GI++ +I + G A + ++ GD ++
Sbjct: 3 HMNIITVTLNMEKY-NFLGISIVGQSNER-GDGGIYIGSIMKGGAVAADGRIEPGDMLLQ 60
Query: 278 INGVPLENKTHAEAIAMFKDIFPQSSK 304
+N + EN ++ +A+ + +DI +
Sbjct: 61 VNDMNFENMSNDDAVRVLRDIVHKPGP 87
Score = 65.5 bits (160), Expect = 9e-14
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
Query: 9 RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
+ + N LGI I Q I I GGA+ DGR GD L++VND + +
Sbjct: 10 TLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENM 69
Query: 69 TIQEAREALNN---KDSHVEIVICRNPDDAKSATNCDN 103
+ +A L + K + + + ++ + + D
Sbjct: 70 SNDDAVRVLRDIVHKPGPIVLTVAKSGGGSGNEVWIDG 107
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 99.1 bits (247), Expect = 4e-26
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 212 KRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLRE 271
+R L + + +K LG S+ G +D + + IFV I G AA + ++R
Sbjct: 17 QRYADLPGELHIIELEKDKN--GLGLSLAGNKDRSR--MSIFVVGINPEGPAAADGRMRI 72
Query: 272 GDEIIAINGVPLENKTHAEAIAMFK 296
GDE++ IN L ++H A A+ K
Sbjct: 73 GDELLEINNQILYGRSHQNASAIIK 97
Score = 66.7 bits (163), Expect = 5e-14
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 10 VVKDDSNELGIYIERQDGGAHFS--PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
++ D N LG+ + G S + I P G DGR +GDEL+++N++ L G
Sbjct: 30 ELEKDKNGLGLSLA---GNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYG 86
Query: 68 LTIQEAREALNNKDSHVEIVICRNPD 93
+ Q A + S V++V RN D
Sbjct: 87 RSHQNASAIIKTAPSKVKLVFIRNED 112
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 98.6 bits (246), Expect = 4e-26
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP-KGNLGIFVKTIFQSGQAAE 265
S+ + S + V K K LGFSI+ +D I ++++ G A
Sbjct: 2 SSGSSGELALWSPEVKIVELVKDC--KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAER 59
Query: 266 NEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
+ L GD ++++N L+N + AEA+ + K +
Sbjct: 60 SGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAV 92
Score = 62.8 bits (153), Expect = 7e-13
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 36 ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL-NNKDSHVEIVICRNP 92
I + G R G GD L+ VN+ L ++ EA E L V + IC P
Sbjct: 48 IRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 99.1 bits (247), Expect = 5e-26
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 3/114 (2%)
Query: 183 GISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGG 242
G S S ++ V P+ + L+ + + + G LG +VGG
Sbjct: 1 GSSGSSGHS--HSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSG-AMLGLKVVGG 57
Query: 243 RDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
+ + G L F+ + + A LR GDE++ NG L+ T E +
Sbjct: 58 KMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIIL 111
Score = 67.1 bits (164), Expect = 3e-14
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 1 MEKQFKVFRVVKDDSNELGIYIE-RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
+ K+ K V +D LG+ + + + I+ ++ G G GDE+++
Sbjct: 33 LNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLE 92
Query: 60 VNDKRLKGLTIQEAREALNN--KDSHVEIVICRNP 92
N + L+G T +E + + VE+V+ R+
Sbjct: 93 WNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG 127
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 97.0 bits (242), Expect = 9e-26
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+K + GF++VGG + + + +K++ G AA + K+ GD I+++N
Sbjct: 2 IHTKLRKSS--RGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDT 56
Query: 282 PLENKTHAEAIAMFKDIFPQSS 303
+ THA+ + +F+ I +S
Sbjct: 57 CVLGHTHAQVVKIFQSIPIGAS 78
Score = 60.7 bits (148), Expect = 2e-12
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 14 DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
S G + G I + G DG+ GD ++ VND + G T +
Sbjct: 9 SSRGFGFTV--VGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQV 66
Query: 74 REALNN--KDSHVEIVICR 90
+ + + V++ +CR
Sbjct: 67 VKIFQSIPIGASVDLELCR 85
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 97.5 bits (243), Expect = 1e-25
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDS-----PKGNLGIFVKTIFQSGQAAENEKLREGDEII 276
T+ + G SLGF+I+GGR S + GIFV I SG AA+ L+ D II
Sbjct: 10 LTLVLHRDSG--SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67
Query: 277 AINGVPLENKTHAEAIAMFK 296
+NG L TH +A+ FK
Sbjct: 68 EVNGRDLSRATHDQAVEAFK 87
Score = 61.6 bits (150), Expect = 2e-12
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 10 VVKDDSNELGIYI------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
V+ DS LG I G+ +S I G ++G + D +I+VN +
Sbjct: 13 VLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGR 72
Query: 64 RLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSA 98
L T +A EA + + + R S
Sbjct: 73 DLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPSSG 107
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 98.3 bits (245), Expect = 1e-25
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 212 KRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLRE 271
+ P L +K + GF++VGG + + + +K++ G AA + K+
Sbjct: 10 RNPSELKGKFIHTKLRKSS--RGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMET 64
Query: 272 GDEIIAINGVPLENKTHAEAIAMFKDI 298
GD I+++N + THA+ + +F+ I
Sbjct: 65 GDVIVSVNDTCVLGHTHAQVVKIFQSI 91
Score = 58.7 bits (142), Expect = 4e-11
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 20 IYIERQDGGAHFS---------PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTI 70
+ + G F+ I + G DG+ GD ++ VND + G T
Sbjct: 22 TKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 81
Query: 71 QEAREALNN--KDSHVEIVICR 90
+ + + + V++ +CR
Sbjct: 82 AQVVKIFQSIPIGASVDLELCR 103
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 97.4 bits (243), Expect = 1e-25
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVG---GRDSPKGNLGIFVKTIFQSGQAAENEKLREG 272
S L +F V +K LG SI+G G D+ LGIFVKT+ + G A + +++
Sbjct: 5 SSGLELFPVELEKDE--DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVN 62
Query: 273 DEIIAINGVPLENKTHAEAIAMFKD 297
D+I+ ++G+ L T A + ++
Sbjct: 63 DQIVEVDGISLVGVTQNFAATVLRN 87
Score = 65.8 bits (161), Expect = 6e-14
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 5 FKVFRVV-KDDSNELGIYIERQDGGAHFSPYL----ISHIEPGGAIHRDGRFHVGDELIK 59
++F V + D + LGI I GA + + GGA RDGR V D++++
Sbjct: 8 LELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVE 67
Query: 60 VNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
V+ L G+T A L N +V VI R S
Sbjct: 68 VDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPSGPS 105
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 95.9 bits (239), Expect = 3e-25
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
FTV +KG GFSI GGR+ + ++V + + G A N ++R GD+II ING
Sbjct: 13 FTVDMEKGAK--GFGFSIRGGREYK---MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGE 67
Query: 282 PLENKTHAEAIAMFK 296
+ THA AI + K
Sbjct: 68 STRDMTHARAIELIK 82
Score = 65.4 bits (160), Expect = 8e-14
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 14 DSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQE 72
+ G I GG + + + G R+GR VGD++I++N + + +T
Sbjct: 20 GAKGFGFSIR---GGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHAR 76
Query: 73 AREALNNKDSHVEIVICRNPDDAKS 97
A E + + V +++ R S
Sbjct: 77 AIELIKSGGRRVRLLLKRGTGSGPS 101
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 95.9 bits (239), Expect = 4e-25
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
+ LGFSI GG+ S G+ GIFV I + G A L+ GD +++I
Sbjct: 9 HVACLARSER--GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66
Query: 279 NGVPLENKTHAEAIAMFK 296
NGV + H A+++
Sbjct: 67 NGVDVTEARHDHAVSLLT 84
Score = 63.1 bits (154), Expect = 5e-13
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPY----LISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
+ LG I G + +S I GGA HR G VGD ++ +N +
Sbjct: 12 CLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDV 71
Query: 66 KGLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
A L + +++ R S
Sbjct: 72 TEARHDHAVSLLTAASPTIALLLEREAGSGPS 103
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 95.4 bits (238), Expect = 5e-25
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
T+ KG LG SIVGG D+ G I + +++ G A ++ +L GD+I+ +NG+
Sbjct: 6 TTIEISKGRT--GLGLSIVGGSDTLLG--AIIIHEVYEEGAACKDGRLWAGDQILEVNGI 61
Query: 282 PLENKTHAEAIAMFK 296
L TH EAI + +
Sbjct: 62 DLRKATHDEAINVLR 76
Score = 68.9 bits (169), Expect = 4e-15
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 10 VVKDDSNELGIYIERQDGGAHFS--PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
+ LG+ I GG+ +I + GA +DGR GD++++VN L+
Sbjct: 9 EISKGRTGLGLSIV---GGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRK 65
Query: 68 LTIQEAREALNNKDSHVEIVICRNPDDAKS 97
T EA L V + + R+ KS
Sbjct: 66 ATHDEAINVLRQTPQRVRLTLYRDEAPYKS 95
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 95.0 bits (237), Expect = 7e-25
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPK-GNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
F V K + LG +I G K GIFVK+I +S + +++ GD+IIA++G
Sbjct: 6 FDVELTKNV--QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDG 63
Query: 281 VPLENKTHAEAIAMFK 296
L+ T+ +A+ + +
Sbjct: 64 TNLQGFTNQQAVEVLR 79
Score = 66.1 bits (162), Expect = 4e-14
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 1 MEKQFKVFRVVKDDSNELGIYIE--RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELI 58
M + F V + + LGI I D S + I A+ DGR +GD++I
Sbjct: 2 MSETFDV--ELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQII 59
Query: 59 KVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD 93
V+ L+G T Q+A E L + V + + R +
Sbjct: 60 AVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGE 94
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 94.6 bits (236), Expect = 7e-25
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
T+ QK PG K LG SIVG R+ G+FV I + G A + +L +GD+I+ +NG
Sbjct: 6 LTIGLQKKPG-KGLGLSIVGKRNDT----GVFVSDIVKGGIADADGRLMQGDQILMVNGE 60
Query: 282 PLENKTHAEAIAMFKD 297
+ N T A+ K
Sbjct: 61 DVRNATQEAVAALLKC 76
Score = 71.5 bits (176), Expect = 4e-16
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 1 MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
M + + K LG+ I G + + +S I GG DGR GD+++ V
Sbjct: 2 MSDTLTI-GLQKKPGKGLGLSIV---GKRNDTGVFVSDIVKGGIADADGRLMQGDQILMV 57
Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVICR 90
N + ++ T + L V + + R
Sbjct: 58 NGEDVRNATQEAVAALLKCSLGTVTLEVGR 87
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 97.3 bits (242), Expect = 8e-25
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 175 RKFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSL-SLSMFTVTFQKGPGQK 233
RK I S D++R N P ++A + K + L +F V +K +
Sbjct: 34 RKIHFSTAPIQVFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDS--E 91
Query: 234 SLGFSIVGGR---DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
LG SI+G D LGIFVKT+ + G A + +++ D ++ ++G L T +
Sbjct: 92 GLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSF 151
Query: 291 AIAMFK 296
A ++ +
Sbjct: 152 AASVLR 157
Score = 64.2 bits (156), Expect = 1e-12
Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 14 DSNELGIYIERQDGGAHFSPYL----ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
DS LGI I GA + + GGA HRDGR V D L++V+ L G+T
Sbjct: 89 DSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT 148
Query: 70 IQEAREALNNKDSHVEIVICR 90
A L N V +I R
Sbjct: 149 QSFAASVLRNTKGRVRFMIGR 169
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 95.2 bits (237), Expect = 1e-24
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAEN 266
S ++ V + + SL ++ GG DSP G + V +++ G A +
Sbjct: 2 SEGAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVG--KVVVSAVYEGGAAERH 59
Query: 267 EKLREGDEIIAINGVPLENKTHAEAIAMFKDIFPQSSK 304
+ +GDEI+AING + + T AEA A + + Q
Sbjct: 60 GGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGD 97
Score = 69.8 bits (171), Expect = 3e-15
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 10 VVKDDSNELGIYIERQDGGA--HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
+ L + +E GG ++S + GGA R G GDE++ +N K +
Sbjct: 22 LRIKKEGSLDLALE---GGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTD 78
Query: 68 LTIQEA----REALNNKDSHVEIVICRNP 92
T+ EA ++A N +++V+ P
Sbjct: 79 YTLAEAEAALQKAWNQGGDWIDLVVAVCP 107
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 94.7 bits (236), Expect = 1e-24
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
VT K KS G IV G GIF+K I A +L+ GD I+++
Sbjct: 7 HMVTLDKTGK-KSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65
Query: 279 NGVPLENKTHAEAIAMFKD 297
NG + N T I + K+
Sbjct: 66 NGKDVRNSTEQAVIDLIKE 84
Score = 63.1 bits (154), Expect = 5e-13
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 7 VFRVV--KDDSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
+ V K GI I + + I I P H GR VGD ++ +
Sbjct: 6 IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65
Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVICR 90
N K ++ T Q + + D +E+ I
Sbjct: 66 NGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 95.1 bits (237), Expect = 1e-24
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 205 NNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAA 264
+ + + S+ +TV ++G GFS+ GGR+ N+ ++V + + G A
Sbjct: 9 SGVDLGTENLYFQSMDFYTVELERGAK--GFGFSLRGGREY---NMDLYVLRLAEDGPAE 63
Query: 265 ENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
+ K+R GDEI+ ING +N H+ AI + K
Sbjct: 64 RSGKMRIGDEILEINGETTKNMKHSRAIELIK 95
Score = 65.1 bits (159), Expect = 1e-13
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 14 DSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQE 72
+ G + GG ++ + + G R G+ +GDE++++N + K +
Sbjct: 33 GAKGFGFSLR---GGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSR 89
Query: 73 AREALNNKDSHVEIVICRNPD 93
A E + N V + + R
Sbjct: 90 AIELIKNGGRRVRLFLKRGET 110
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 95.2 bits (237), Expect = 1e-24
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 228 KGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
LG IVGG++ P G +G ++ I G A + KL EG +++ NG+PL +
Sbjct: 25 HTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTS 84
Query: 286 KTHAEAIAMFK 296
KT+ E ++
Sbjct: 85 KTYEEVQSIIS 95
Score = 65.6 bits (160), Expect = 9e-14
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 9 RVVKDDSNELGIYI---ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
+ N LGI I + G + I+ I PGG+ + G+ G ++++ N L
Sbjct: 23 KDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPL 82
Query: 66 KGLTIQEAREALNNKDSHVEIVICRNPD 93
T +E + ++ + EI + + +
Sbjct: 83 TSKTYEEVQSIISQQSGEAEICVRLDLN 110
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 94.3 bits (235), Expect = 1e-24
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+ + GF I+GG + I++ I G A + +LR GDE+I+++G
Sbjct: 4 QDIFLWRKET--GFGFRILGGNEP---GEPIYIGHIVPLGAADTDGRLRSGDELISVDGT 58
Query: 282 PLENKTHAEAIAMFKDI 298
P+ K+H + + +
Sbjct: 59 PVIGKSHQLVVQLMQQA 75
Score = 62.7 bits (153), Expect = 6e-13
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 15 SNELGIYIERQDGGAHFS---------PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
S E I++ R++ G F P I HI P GA DGR GDELI V+ +
Sbjct: 1 SMEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60
Query: 66 KGLTIQEAREALNN--KDSHVEIVICRNP 92
G + Q + + K HV + + +
Sbjct: 61 IGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 95.2 bits (237), Expect = 1e-24
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPK--GNLGIFVKTIFQSGQAA 264
S+ + S + V + G +SLG IVG + GI+VK++ A
Sbjct: 2 SSGSSGGSDSSLFETYNVELVRKDG-QSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAY 60
Query: 265 ENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
N ++ D+I+A++GV ++ + + + + ++
Sbjct: 61 HNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN 93
Score = 61.7 bits (150), Expect = 3e-12
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 5/107 (4%)
Query: 10 VVKDDSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
+V+ D LGI I G Y + + PG A + +G V D+++ V+ +
Sbjct: 21 LVRKDGQSLGIRIVGYVGTSHTGEASGIY-VKSVIPGSAAYHNGHIQVNDKIVAVDGVNI 79
Query: 66 KGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLP 112
+G + E L N V + + R + ++ + P
Sbjct: 80 QGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEPPSDRGTVSGP 126
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 94.2 bits (235), Expect = 1e-24
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKG-NLGIFVKTIFQSGQAAENEKLREGDEII 276
S+ VT K + GF I GG + + + + ++ G A ++ GD ++
Sbjct: 1 SMRTVEVTLHKEGN--TFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLL 58
Query: 277 AINGVPLENKTHAEAIAMFKD 297
+++G+ L THAEA+++ K
Sbjct: 59 SVDGIRLLGTTHAEAMSILKQ 79
Score = 67.2 bits (165), Expect = 2e-14
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 6 KVFRVV-KDDSNELGIYIE--RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVND 62
+ V + N G I D P +I+ + PGG R+G GD L+ V+
Sbjct: 3 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDG 62
Query: 63 KRLKGLTIQEAREALNNKDSHVEIVICRNP 92
RL G T EA L ++I +
Sbjct: 63 IRLLGTTHAEAMSILKQCGQEAALLIEYDV 92
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 93.9 bits (234), Expect = 2e-24
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
S+ + V K + LG +V D P G+F+ + + G AA++ +L D ++A
Sbjct: 1 SMEILQVALHKRDSGEQLGIKLVRRTDEP----GVFILDLLEGGLAAQDGRLSSNDRVLA 56
Query: 278 INGVPLENKTHAEAIAMFK 296
ING L+ T A + +
Sbjct: 57 INGHDLKYGTPELAAQIIQ 75
Score = 67.3 bits (165), Expect = 1e-14
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 7 VFRVV--KDDSNE-LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
+ +V K DS E LGI + I + GG +DGR D ++ +N
Sbjct: 4 ILQVALHKRDSGEQLGIKLV---RRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGH 60
Query: 64 RLKGLTIQEAREALNNKDSHVEIVICRNPD 93
LK T + A + + V + I R
Sbjct: 61 DLKYGTPELAAQIIQASGERVNLTIARPGK 90
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 94.8 bits (236), Expect = 2e-24
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEI 275
+ VT QK +G SI GG +++ +F + AA + + GDEI
Sbjct: 15 GIPTVPGKVTLQKDAQ-NLIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEI 70
Query: 276 IAINGVPLENKTHAEAIAMFKDI 298
+NG ++ KT E M +++
Sbjct: 71 TGVNGRSIKGKTKVEVAKMIQEV 93
Score = 67.5 bits (165), Expect = 3e-14
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 1 MEKQFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
+ + KD N +GI I GGA + I + DG GDE+
Sbjct: 16 IPTVPGKVTLQKDAQNLIGISIG---GGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITG 72
Query: 60 VNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAK 96
VN + +KG T E + + V I + D K
Sbjct: 73 VNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPK 109
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 93.9 bits (234), Expect = 2e-24
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
V ++ GF I+GG + I + + G A + +L GDE++ ++G
Sbjct: 10 ELDVHLRRMES--GFGFRILGGDEP---GQPILIGAVIAMGSADRDGRLHPGDELVYVDG 64
Query: 281 VPLENKTHAEAIAMFK 296
+P+ KTH I +
Sbjct: 65 IPVAGKTHRYVIDLMH 80
Score = 64.6 bits (158), Expect = 1e-13
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 13 DDSNELGIYIERQDGGAHFS---------PYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
EL +++ R + G F P LI + G+ RDGR H GDEL+ V+
Sbjct: 6 SGYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGI 65
Query: 64 RLKGLTIQEAREALNN--KDSHVEIVICRNPDDAKSA 98
+ G T + + +++ ++ V + + R S+
Sbjct: 66 PVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLSGPSS 102
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 94.0 bits (234), Expect = 2e-24
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 221 MFTVTFQKGPGQKSLGFSIV-----GGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEI 275
+F V K SLG S+ GG ++ + GI+VK + G A + ++ +GD +
Sbjct: 10 IFEVELAKNDN--SLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRV 67
Query: 276 IAINGVPLENKTHAEAIAMFK 296
+A+NGV LE TH +A+ +
Sbjct: 68 LAVNGVSLEGATHKQAVETLR 88
Score = 64.3 bits (157), Expect = 2e-13
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 14 DSNELGIYI--ERQDGGAHFS----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
+ N LGI + GG + S + + P GA DGR H GD ++ VN L+G
Sbjct: 18 NDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 77
Query: 68 LTIQEAREALNNKDSHVEIVICRNPD 93
T ++A E L N V +++ +
Sbjct: 78 ATHKQAVETLRNTGQVVHLLLEKGQS 103
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 94.1 bits (234), Expect = 3e-24
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 202 ATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSG 261
+ +S AT+K+ + K G LGFS+ GG D I V +F +G
Sbjct: 1 GSSGSSGATLKQLDGI----HVTILHKEEG-AGLGFSLAGGADLENK--VITVHRVFPNG 53
Query: 262 QAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
A++ +++G+E+++ING L+ TH +A+A+ +
Sbjct: 54 LASQEGTIQKGNEVLSINGKSLKGTTHHDALAILR 88
Score = 66.7 bits (163), Expect = 4e-14
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 10 VVKDDSNELGIYIERQDGGAHF--SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
+ K++ LG + GGA + + P G ++G G+E++ +N K LKG
Sbjct: 21 LHKEEGAGLGFSLA---GGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKG 77
Query: 68 LTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQP 106
T +A L + VI ++ + ++ P
Sbjct: 78 TTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNSSGP 116
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 93.6 bits (233), Expect = 3e-24
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
V+ ++ + LGFSI GG + +GI+V + G AE E LR GD+I+ +N
Sbjct: 11 LVSLRRAKAHEGLGFSIRGGSEH---GVGIYVSLVE-PGSLAEKEGLRVGDQILRVNDKS 66
Query: 283 LENKTHAEAIAMFK 296
L THAEA+ K
Sbjct: 67 LARVTHAEAVKALK 80
Score = 53.9 bits (130), Expect = 1e-09
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 2 EKQFKVFRVVKDDSNE-LGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
+ ++ + + ++E LG I GG+ H +S +EPG ++G VGD++++
Sbjct: 6 SGEVRLVSLRRAKAHEGLGFSIR---GGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILR 61
Query: 60 VNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
VNDK L +T EA +AL V V S
Sbjct: 62 VNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRISGPS 99
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 94.1 bits (234), Expect = 3e-24
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
S+ VT QK +G SI GG +++ +F + AA + + GDEI
Sbjct: 22 SMVPGKVTLQKDAQ-NLIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEITG 77
Query: 278 INGVPLENKTHAEAIAMFK 296
+NG ++ KT E M +
Sbjct: 78 VNGRSIKGKTKVEVAKMIQ 96
Score = 66.3 bits (162), Expect = 5e-14
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 1 MEKQFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
+ KD N +GI I GGA + I + DG GDE+
Sbjct: 21 QSMVPGKVTLQKDAQNLIGISIG---GGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITG 77
Query: 60 VNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
VN + +KG T E + + V I +
Sbjct: 78 VNGRSIKGKTKVEVAKMIQEVKGEVTIHYNK 108
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 94.1 bits (234), Expect = 3e-24
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDS------PKGNLGIFVKTIFQSGQAAENEKLREGDEI 275
V + P KSLG SIVGGR + GIF+K + + A +N L+ GD I
Sbjct: 26 RRVELWREPS-KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 84
Query: 276 IAINGVPLENKTHAEAIAMFKD 297
+ ++G+ L + +H +A+ +
Sbjct: 85 VEVDGMDLRDASHEQAVEAIRK 106
Score = 63.6 bits (155), Expect = 6e-13
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 2 EKQFKVFRVVKDDSNELGIYI-------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVG 54
Q + + ++ S LGI I R G I H+ ++G G
Sbjct: 22 SMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPG 81
Query: 55 DELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
D +++V+ L+ + ++A EA+ + V ++
Sbjct: 82 DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 93.6 bits (233), Expect = 3e-24
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGR---DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
+F V +K + LG SI+G D LGIFVKT+ + G A + +++ D ++
Sbjct: 5 LFPVELEKDS--EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVE 62
Query: 278 INGVPLENKTHAEAIAMFK 296
++G L T + A ++ +
Sbjct: 63 VDGTSLVGVTQSFAASVLR 81
Score = 67.8 bits (166), Expect = 2e-14
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 14 DSNELGIYIERQDGGAHFSPYL----ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
DS LGI I GA + + GGA HRDGR V D L++V+ L G+T
Sbjct: 13 DSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT 72
Query: 70 IQEAREALNNKDSHVEIVICRNPDDAKS 97
A L N V +I R +S
Sbjct: 73 QSFAASVLRNTKGRVRFMIGRERPGEQS 100
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 93.7 bits (233), Expect = 3e-24
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 214 PKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLR 270
+ + +TVT QK + G ++ GGRD+P G I + + G A + L+
Sbjct: 8 MEEVIWEQYTVTLQKDSK-RGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQ 64
Query: 271 EGDEIIAINGVPLENKTHAEAIAMFKD 297
E D ++ +NG P+E+ H+ A+ +
Sbjct: 65 ENDRVVMVNGTPMEDVLHSFAVQQLRK 91
Score = 56.7 bits (137), Expect = 2e-10
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 9 RVVKDDSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
+ KD GI + + + +IS + PGG DG D ++ VN
Sbjct: 19 TLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGP--ADGLLQENDRVVMVNGTP 76
Query: 65 LKGLTIQEAREALNNKDSHVEIVICRNPD 93
++ + A + L IV+ R
Sbjct: 77 MEDVLHSFAVQQLRKSGKIAAIVVKRPRK 105
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 93.2 bits (232), Expect = 4e-24
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRD------SPKGNLGIFVKTIFQSGQAAENEKLRE 271
S+ V + P KSLG SIVGGR + + GIF+K + + A +N L+
Sbjct: 2 SMQPRRVELWREPS-KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 60
Query: 272 GDEIIAINGVPLENKTHAEAIAMFKD 297
GD I+ ++G+ L + +H +A+ +
Sbjct: 61 GDRIVEVDGMDLRDASHEQAVEAIRK 86
Score = 63.9 bits (156), Expect = 3e-13
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 9 RVVKDDSNELGIYI-------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
+ ++ S LGI I R G I H+ ++G GD +++V+
Sbjct: 9 ELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVD 68
Query: 62 DKRLKGLTIQEAREALNNKDSHVEIVICR 90
L+ + ++A EA+ + V ++
Sbjct: 69 GMDLRDASHEQAVEAIRKAGNPVVFMVQS 97
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 93.1 bits (232), Expect = 4e-24
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDE 274
S+ T+T + G LG SI GG+ S + GIF+ + + G A +R GD+
Sbjct: 1 SMEELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEG-PAARAGVRVGDK 57
Query: 275 IIAINGVPLENKTHAEAIAMFKD 297
++ +NGV L+ H EA+ +
Sbjct: 58 LLEVNGVALQGAEHHEAVEALRG 80
Score = 55.4 bits (134), Expect = 3e-10
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 14 DSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
+ LGI I IS + G R G VGD+L++VN L+G
Sbjct: 12 QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAE 70
Query: 70 IQEAREALNNKDSHVEIVICRNPDDA 95
EA EAL + V++ + R + +
Sbjct: 71 HHEAVEALRGAGTAVQMRVWRERETS 96
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 93.3 bits (232), Expect = 5e-24
Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAEN 266
S+ + P + +T K G LG I+GG + +G +++ + G ++
Sbjct: 2 SSGSSGSPLDRDPAFRVITVTKETG---LGLKILGGINRNEGP-LVYIHEVIPGGDCYKD 57
Query: 267 EKLREGDEIIAINGVPLENKTHAEAIAMFK 296
+L+ GD++++IN + + EA ++
Sbjct: 58 GRLKPGDQLVSINKESMIGVSFEEAKSIIT 87
Score = 62.1 bits (151), Expect = 2e-12
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
+ F+V V K+ LG+ I I + PGG ++DGR GD+L+ +N
Sbjct: 13 DPAFRVITVTKETG--LGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSIN 70
Query: 62 DKRLKGLTIQEA----REALNNKDSHVEIVICRN 91
+ + G++ +EA A +S EI R+
Sbjct: 71 KESMIGVSFEEAKSIITRAKLRSESPWEIAFIRS 104
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 92.8 bits (231), Expect = 7e-24
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+ KG LG SIVGG+D+P I + +++ G AA + +L GD+I+ +NGV
Sbjct: 19 MIIEISKGR--SGLGLSIVGGKDTPLN--AIVIHEVYEEGAAARDGRLWAGDQILEVNGV 74
Query: 282 PLENKTHAEAIAMFK 296
L N +H EAI +
Sbjct: 75 DLRNSSHEEAITALR 89
Score = 69.0 bits (169), Expect = 5e-15
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 10 VVKDDSNELGIYIERQDGGAHF--SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
+ + LG+ I GG + +I + GA RDGR GD++++VN L+
Sbjct: 22 EISKGRSGLGLSIV---GGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRN 78
Query: 68 LTIQEAREALNNKDSHVEIVICRNPDDAKSATNC 101
+ +EA AL V +V+ R+ + +
Sbjct: 79 SSHEEAITALRQTPQKVRLVVYRDEAHYRDEESG 112
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 91.9 bits (229), Expect = 8e-24
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
V K LGF+I+GG++ N I++ + G A + L+ GD+++++NGV
Sbjct: 7 GVVELPKTDE--GLGFNIMGGKEQ---NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGV 61
Query: 282 PLENKTHAEAIAMFK 296
+E + H +A+ + K
Sbjct: 62 SVEGEQHEKAVELLK 76
Score = 66.5 bits (163), Expect = 2e-14
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 13 DDSNELGIYIERQDGGAHFS---------PYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
+ + + + D G F+ P IS + PGG R G GD+L+ VN
Sbjct: 2 SSGSSGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGV 61
Query: 64 RLKGLTIQEAREALNNKDSHVEIVICRNP 92
++G ++A E L V++V+ P
Sbjct: 62 SVEGEQHEKAVELLKAAQGSVKLVVRSGP 90
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 92.4 bits (230), Expect = 8e-24
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQA 263
S+ + P + T+T + G LG SI GG+ S + GIF+ + + G
Sbjct: 2 SSGSSGEPARIEEEELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEG-P 58
Query: 264 AENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
A +R GD+++ +NGV L+ H EA+ +
Sbjct: 59 AARAGVRVGDKLLEVNGVALQGAEHHEAVEALR 91
Score = 54.7 bits (132), Expect = 8e-10
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 1 MEKQFKVFRVVKDDSNELGIYIERQDGGAHF----SPYLISHIEPGGAIHRDGRFHVGDE 56
+E++ +++ LGI I G + IS + G R G VGD+
Sbjct: 12 IEEEELTLTILRQTGG-LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDK 69
Query: 57 LIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPD 93
L++VN L+G EA EAL + V++ + R
Sbjct: 70 LLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESG 106
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 91.6 bits (228), Expect = 1e-23
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
VT +K LG SI GGR++ + I + IF+ A + E L GD I+++NG
Sbjct: 7 RVTVRKADA-GGLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGED 62
Query: 283 LENKTHAEAIAMFKD 297
L + TH EA+ K
Sbjct: 63 LSSATHDEAVQALKK 77
Score = 64.2 bits (157), Expect = 1e-13
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 4 QFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVND 62
Q + V K D+ LGI I+ GG + P LIS I G A + VGD ++ VN
Sbjct: 4 QRRRVTVRKADAGGLGISIK---GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG 60
Query: 63 KRLKGLTIQEAREALNNKDSHVEIVICR 90
+ L T EA +AL V + +
Sbjct: 61 EDLSSATHDEAVQALKKTGKEVVLEVKY 88
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 92.4 bits (230), Expect = 1e-23
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAEN 266
S+ + RP + + KG LGF+IVGG D GIFV I G A +
Sbjct: 2 SSGSSGRPGGDAREPRKIILHKGST--GLGFNIVGGEDGE----GIFVSFILAGGPADLS 55
Query: 267 EKLREGDEIIAINGVPLENKTHAEAIAMFK 296
+LR GD I+++NGV L N TH +A A K
Sbjct: 56 GELRRGDRILSVNGVNLRNATHEQAAAALK 85
Score = 68.2 bits (167), Expect = 1e-14
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
++ S LG I GG +S I GG G GD ++ VN L+ T
Sbjct: 20 ILHKGSTGLGFNIV---GGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNAT 76
Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
++A AL V IV P++
Sbjct: 77 HEQAAAALKRAGQSVTIVAQYRPEE 101
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 91.7 bits (228), Expect = 2e-23
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSP---KGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
TVT + PG G +I GGRD+P G I + + + G A +L+E D + +
Sbjct: 9 HTVTLHRAPG-FGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMV 65
Query: 279 NGVPLENKTHAEAIAMFKD 297
NGV ++N HA A+ +
Sbjct: 66 NGVSMDNVEHAFAVQQLRK 84
Score = 56.6 bits (137), Expect = 1e-10
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 9 RVVKDDSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
+ + GI I + + + +IS + GG +G+ D + VN
Sbjct: 12 TLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGP--AEGQLQENDRVAMVNGVS 69
Query: 65 LKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATN 100
+ + A + L + +I I R T
Sbjct: 70 MDNVEHAFAVQQLRKSGKNAKITIRRKKGGGWRRTT 105
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 89.8 bits (223), Expect = 9e-23
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 195 HNRSNVAATPNNSNATVKRPKSLSLS-MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIF 253
H+ + ++ + + ++L + V K + LG SI GG++ + I
Sbjct: 1 HHHHHHHHHHSSGHIEGRHMENLYFQGIRKVLLLKEDH-EGLGISITGGKEH---GVPIL 56
Query: 254 VKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
+ I A L GD I+A+NGV L + H EA+ +
Sbjct: 57 ISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 100
Score = 64.0 bits (156), Expect = 3e-13
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 9 RVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
++K+D LGI I GG H P LIS I PG R G HVGD ++ VN L+
Sbjct: 32 LLLKEDHEGLGISIT---GGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 88
Query: 68 LTIQEAREALNNKDSHVEIVI 88
+EA L+ + +E +
Sbjct: 89 TKHKEAVTILSQQRGEIEFEV 109
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 89.4 bits (222), Expect = 1e-22
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
+ V LGF IVGG+ S G+ V+TI G A + +L+ GD I+ I G
Sbjct: 16 VEEVELINDG--SGLGFGIVGGKTS-----GVVVRTIVPGGLADRDGRLQTGDHILKIGG 68
Query: 281 VPLENKTHAEAIAMFK 296
++ T + + +
Sbjct: 69 TNVQGMTSEQVAQVLR 84
Score = 70.1 bits (172), Expect = 2e-15
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 6 KVFRVV-KDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
V V +D + LG I GG S ++ I PGG RDGR GD ++K+
Sbjct: 15 HVEEVELINDGSGLGFGIV---GGKT-SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTN 70
Query: 65 LKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNC 101
++G+T ++ + L N + V +++ R+P S T+
Sbjct: 71 VQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSG 107
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 88.9 bits (221), Expect = 1e-22
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
SL F V K G K LG S+ G + + Q + KL+ GD I
Sbjct: 6 SLEKFNVDLMKKAG-KELGLSLSPNEI------GCTIADLIQGQYPEIDSKLQRGDIITK 58
Query: 278 INGVPLENKTHAEAIAMFK 296
NG LE + A+FK
Sbjct: 59 FNGDALEGLPFQVSYALFK 77
Score = 72.3 bits (178), Expect = 2e-16
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 2 EKQFKVFRV--VKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
+ F V +K ELG+ + + G I+ + G D + GD + K
Sbjct: 4 RNSLEKFNVDLMKKAGKELGLSLSPNEIGC-----TIADLIQGQYPEIDSKLQRGDIITK 58
Query: 60 VNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
N L+GL Q + + V + + R A S
Sbjct: 59 FNGDALEGLPFQVSYALFKGANGKVSMEVTRPKPAAAS 96
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 89.0 bits (221), Expect = 2e-22
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
VT +K PG LGF+I GG+ S LGIF+ + A L+EGD+++A+N V
Sbjct: 18 IVTLKKPPG-AQLGFNIRGGKAS---QLGIFISKVIPDSDAHRA-GLQEGDQVLAVNDVD 72
Query: 283 LENKTHAEAIAMFK 296
++ H++A+ + K
Sbjct: 73 FQDIEHSKAVEILK 86
Score = 53.1 bits (128), Expect = 2e-09
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 9 RVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
+ K +LG I GG IS + P HR G GD+++ VND +
Sbjct: 20 TLKKPPGAQLGFNIR---GGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQD 75
Query: 68 LTIQEAREALNNKDSHVEIVICRNPD 93
+ +A E L + + +
Sbjct: 76 IEHSKAVEILKTAR-EISMRVRFFSG 100
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 89.1 bits (221), Expect = 2e-22
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 16/106 (15%)
Query: 198 SNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP------KGNLG 251
S+ ++ PN S+ R V + P SLG SIVGG+ + G
Sbjct: 2 SSGSSGPNFSHWGPPR---------IVEIFREPN-VSLGISIVGGQTVIKRLKNGEELKG 51
Query: 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
IF+K + + A + L+ GD+I+ ++GV L+N +H+EA+ K+
Sbjct: 52 IFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN 97
Score = 63.3 bits (154), Expect = 7e-13
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 9 RVVKDDSNELGIYI-------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
+ ++ + LGI I +R G I + + GD++++V+
Sbjct: 20 EIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVS 79
Query: 62 DKRLKGLTIQEAREALNNKDSHVEIVICRNPD 93
L+ + EA EA+ N + V ++
Sbjct: 80 GVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS 111
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 89.1 bits (221), Expect = 3e-22
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 212 KRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLRE 271
+ L + V + Q LG ++ D ++GI++ I + AA++ ++RE
Sbjct: 11 QEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAKDGRIRE 69
Query: 272 GDEIIAINGVPLENKTHAEAI 292
GD II ING+ ++N+ A A+
Sbjct: 70 GDRIIQINGIEVQNREEAVAL 90
Score = 59.5 bits (144), Expect = 2e-11
Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Query: 5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
+V + ++LG+ + + IS I+P +DGR GD +I++N
Sbjct: 21 EEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIE 80
Query: 65 LKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQP 106
++ A ++ + ++I R D+ P
Sbjct: 81 VQNREEAVALLTS-EENKNFSLLIARPELQLDEGWMDDDSGP 121
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 88.3 bits (219), Expect = 4e-22
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+ +G LGF+IVGG D GIF+ I G A + +LR+GD+I+++NGV
Sbjct: 16 RRIVIHRGST--GLGFNIVGGEDGE----GIFISFILAGGPADLSGELRKGDQILSVNGV 69
Query: 282 PLENKTHAEAIAMFK 296
L N +H +A K
Sbjct: 70 DLRNASHEQAAIALK 84
Score = 68.6 bits (168), Expect = 8e-15
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
V+ S LG I GG IS I GG G GD+++ VN L+ +
Sbjct: 19 VIHRGSTGLGFNIV---GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 75
Query: 70 IQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPN 107
++A AL N V I+ P++ + +
Sbjct: 76 HEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDSS 113
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 87.4 bits (217), Expect = 7e-22
Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
L F V K G K LG S+ G + + Q + KL+ GD I
Sbjct: 1 LEKFNVDLMKKAG-KELGLSLSPNEI------GCTIADLIQGQYPEIDSKLQRGDIITKF 53
Query: 279 NGVPLENKTHAEAIAMFK 296
NG LE A+FK
Sbjct: 54 NGDALEGLPFQVCYALFK 71
Score = 69.3 bits (170), Expect = 3e-15
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 1 MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
+EK F V ++K ELG+ + + G I+ + G D + GD + K
Sbjct: 1 LEK-FNV-DLMKKAGKELGLSLSPNEIGC-----TIADLIQGQYPEIDSKLQRGDIITKF 53
Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
N L+GL Q + V + + R +
Sbjct: 54 NGDALEGLPFQVCYALFKGANGKVSMEVTRPKPGSGG 90
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 87.5 bits (217), Expect = 8e-22
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+V K LGF + P + + + + G A ++ ++ GD I+A+N
Sbjct: 3 ISVRLFKRKV-GGLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDR 57
Query: 282 PLENKTHAEAIAMFKDI 298
PL + ++ A+ + + I
Sbjct: 58 PLVDLSYDSALEVLRGI 74
Score = 63.7 bits (155), Expect = 5e-13
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 9 RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
R+ K LG ++ P +IS + GGA + G GD ++ VND+ L L
Sbjct: 6 RLFKRKVGGLGFLVK---ERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 62
Query: 69 TIQEAREALNNKDSHVEI-VICRNPDD 94
+ A E L S + +I R P+
Sbjct: 63 SYDSALEVLRGIASETHVVLILRGPEG 89
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 87.2 bits (216), Expect = 1e-21
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
V G G+ SLG +I GG + LGI++ + G AE L+ GD+I+ +NG
Sbjct: 23 KVNLVLGDGR-SLGLTIRGGAEY---GLGIYITGVDP-GSEAEGSGLKVGDQILEVNGRS 77
Query: 283 LENKTHAEAIAMFK 296
N H EA+ + K
Sbjct: 78 FLNILHDEAVRLLK 91
Score = 55.2 bits (133), Expect = 7e-10
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 9 RVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
+V D LG+ I GGA + I+ ++PG G VGD++++VN +
Sbjct: 25 NLVLGDGRSLGLTIR---GGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLN 80
Query: 68 LTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLP 112
+ EA L + + V T + + P
Sbjct: 81 ILHDEAVRLLKSSRHLILTVKDVGRLPHARTTVDETKWIASSSGP 125
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 86.3 bits (214), Expect = 2e-21
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGN----LGIFVKTIFQSGQAAENEKLRE 271
S SL V + + GF I+ + P+ + + I A KL+
Sbjct: 6 SGSLQTSDVVIHRKEN-EGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKV 64
Query: 272 GDEIIAINGVPLENKTHAEAIAMFKD 297
GD I+A+NG + N HA+ + + KD
Sbjct: 65 GDRILAVNGQSIINMPHADIVKLIKD 90
Score = 66.7 bits (163), Expect = 4e-14
Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 10 VVKDDSNELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
+ + ++ G I + G P+ I I G R + VGD ++ VN +
Sbjct: 16 IHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQS 75
Query: 65 LKGLTIQEAREALNNKDSHVEIVICRNPD 93
+ + + + + + V + I +
Sbjct: 76 IINMPHADIVKLIKDAGLSVTLRIIPQEE 104
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 86.2 bits (214), Expect = 2e-21
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 213 RPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREG 272
+ + + +G LGF+IVGG GIF+ I G A + +LR+G
Sbjct: 4 GEEDIPREPRRIVIHRGST--GLGFNIVGGEXGE----GIFISFILAGGPADLSGELRKG 57
Query: 273 DEIIAINGVPLENKTHAEAIAMFK 296
D+I+++NGV L N +H +A K
Sbjct: 58 DQILSVNGVDLRNASHEQAAIALK 81
Score = 66.2 bits (162), Expect = 4e-14
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
V+ S LG I GG IS I GG G GD+++ VN L+ +
Sbjct: 16 VIHRGSTGLGFNIV---GGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 72
Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
++A AL N V I+ P++
Sbjct: 73 HEQAAIALKNAGQTVTIIAQYKPEE 97
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 88.3 bits (219), Expect = 3e-21
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENEKLREGD 273
S S+ +T ++G LGFSI GG D+P + IF+ I G AA++ +LR D
Sbjct: 1 SGSMEYEEITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVND 58
Query: 274 EIIAINGVPLENKTHAEAIAMFKD 297
I+ +N V + TH+ A+ K+
Sbjct: 59 SILFVNEVDVREVTHSAAVEALKE 82
Score = 86.0 bits (213), Expect = 2e-20
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 210 TVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP--KGNLGIFVKTIFQSGQAAENE 267
V R K + + + KGP K LGFSI GG + G+ I+V I + G A ++
Sbjct: 90 YVMRRKPPAEKVMEIKLIKGP--KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDG 147
Query: 268 KLREGDEIIAINGVPLENKTHAEAIAMFK 296
+L+ GD+I+A+N V LE+ H +A+A K
Sbjct: 148 RLQIGDKILAVNSVGLEDVMHEDAVAALK 176
Score = 70.5 bits (173), Expect = 1e-14
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 1 MEKQFKVFRVVKDDSNELGIYIERQDGGAHFS---PYLISHIEPGGAIHRDGRFHVGDEL 57
+ + + LG I G H ++ I GGA H+DGR +GD++
Sbjct: 96 PPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKI 155
Query: 58 IKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSA 98
+ VN L+ + ++A AL N V + + + P +A++
Sbjct: 156 LAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAK-PSNAETM 195
Score = 67.5 bits (165), Expect = 1e-13
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 10 VVKDDSNELGIYI----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
++ ++ LG I + G S + I+ I PGGA +DGR V D ++ VN+ +
Sbjct: 10 TLERGNSGLGFSIAGGTDNPHIGDDPSIF-ITKIIPGGAAAQDGRLRVNDSILFVNEVDV 68
Query: 66 KGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNL 111
+ +T A EAL S V + + R L PK L
Sbjct: 69 REVTHSAAVEALKEAGSIVRLYVMRRKPP-AEKVMEIKLIKGPKGL 113
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 85.5 bits (212), Expect = 3e-21
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
V K + LG SI GG++ + I + I A L GD I+A+NGV
Sbjct: 12 KVLLLKEDHE-GLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVN 67
Query: 283 LENKTHAEAIAMFKD 297
L + H EA+ +
Sbjct: 68 LRDTKHKEAVTILSQ 82
Score = 63.5 bits (155), Expect = 4e-13
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 9 RVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
++K+D LGI I GG H P LIS I PG R G HVGD ++ VN L+
Sbjct: 14 LLLKEDHEGLGISIT---GGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 70
Query: 68 LTIQEAREALNNKDSHVEIVICRNPDD 94
+EA L+ + +E + +
Sbjct: 71 TKHKEAVTILSQQRGEIEFEVVYVALE 97
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 84.3 bits (209), Expect = 7e-21
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
+V +K P LGFS+ GG + LGIFV + G +AE L GD+I +NG+
Sbjct: 13 SVRVEKSPAG-RLGFSVRGGSEH---GLGIFVSKVE-EGSSAERAGLCVGDKITEVNGLS 67
Query: 283 LENKTHAEAIAMFK 296
LE+ T A+ +
Sbjct: 68 LESTTMGSAVKVLT 81
Score = 56.2 bits (136), Expect = 1e-10
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 9 RVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
RV K + LG + GG+ H +S +E G + R G VGD++ +VN L+
Sbjct: 15 RVEKSPAGRLGFSVR---GGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLES 70
Query: 68 LTIQEAREALNNKDSHVEIVICRNPDDAKSA 98
T+ A + L + + +++ R S
Sbjct: 71 TTMGSAVKVLTSSS-RLHMMVRRMGSGPSSG 100
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 85.3 bits (211), Expect = 7e-21
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+V K LGF + P + + + + G A ++ ++ GD I+A+N
Sbjct: 10 ISVRLFKRKV-GGLGFLVKERVSKP----PVIISDLIRGGAAEQSGLIQAGDIILAVNDR 64
Query: 282 PLENKTHAEAIAMFKDI 298
PL + ++ A+ + + I
Sbjct: 65 PLVDLSYDSALEVLRGI 81
Score = 67.2 bits (164), Expect = 4e-14
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 9 RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
R+ K LG ++ P +IS + GGA + G GD ++ VND+ L L
Sbjct: 13 RLFKRKVGGLGFLVK---ERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDL 69
Query: 69 TIQEAREALNNKDSHVEIVICRNPDDA 95
+ A E L S +V+ +
Sbjct: 70 SYDSALEVLRGIASETHVVLILRGPEG 96
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 84.4 bits (209), Expect = 8e-21
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEI 275
S S V +K +LG +I GG ++ + + TI + G A +L+ G I
Sbjct: 2 SSGSSGTLVRVKKSAA--TLGIAIEGGANTRQP--LPRIVTIQRGGSAHNCGQLKVGHVI 57
Query: 276 IAINGVPLENKTHAEAIAMFKDIFPQSSK 304
+ +NG+ L K H EA + + F +
Sbjct: 58 LEVNGLTLRGKEHREAARIIAEAFKTKDR 86
Score = 61.7 bits (150), Expect = 2e-12
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 10 VVKDDSNELGIYIERQDGGA-HFSPY-LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
VK + LGI IE GGA P I I+ GG+ H G+ VG +++VN L+G
Sbjct: 11 RVKKSAATLGIAIE---GGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRG 67
Query: 68 LTIQEAREALNN-----KDSHVEIVICRNPDDAKSA 98
+EA + +++ ++ S
Sbjct: 68 KEHREAARIIAEAFKTKDRDYIDFLVTEFNSGPSSG 103
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 83.5 bits (207), Expect = 1e-20
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
++TV ++ G LG +I G + I + ++ + G A + GD I+AIN
Sbjct: 6 IYTVELKRYGG--PLGITISGTEEP---FDPIIISSLTKGGLAERTGAIHIGDRILAINS 60
Query: 281 VPLENKTHAEAIAMFK 296
L+ K +EAI + +
Sbjct: 61 SSLKGKPLSEAIHLLQ 76
Score = 68.1 bits (167), Expect = 8e-15
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 14 DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA 73
LGI I F P +IS + GG R G H+GD ++ +N LKG + EA
Sbjct: 14 YGGPLGITI--SGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEA 71
Query: 74 REALNNKDSHVEIVICRNPDDAKSAT 99
L V + I + D +++
Sbjct: 72 IHLLQMAGETVTLKIKKQTDAQPASS 97
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 87.9 bits (217), Expect = 2e-20
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 184 ISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGR 243
+SP + + + + A + P++L L VT +K LG SI GGR
Sbjct: 41 VSPADGEPGPEPEPAQLNGAAEPGAAPPQLPEALLLQRRRVTVRKADAG-GLGISIKGGR 99
Query: 244 DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
++ + I + IF+ A + E L GD I+++NG L + TH EA+ K
Sbjct: 100 ENK---MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 150
Score = 59.0 bits (142), Expect = 2e-10
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 4 QFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVND 62
Q + V K D+ LGI I+ GG + P LIS I G A + VGD ++ VN
Sbjct: 77 QRRRVTVRKADAGGLGISIK---GGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG 133
Query: 63 KRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNC 101
+ L T EA +AL V + + + + N
Sbjct: 134 EDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNS 172
Score = 38.2 bits (88), Expect = 0.002
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 234 SLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
SL + V R +P +++ GQ A LR DE A +
Sbjct: 209 SLKMAYVSRRCTPTDPEPRYLEICAADGQDA--VFLRAKDEASARS 252
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 86.3 bits (214), Expect = 2e-20
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRD-SPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
VT K + GF I GG + + + + G A ++ GD +++++
Sbjct: 107 TVEVTLHKEGN--TFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVD 164
Query: 280 GVPLENKTHAEAIAMFK 296
G+ L THAEA+++ K
Sbjct: 165 GIRLLGTTHAEAMSILK 181
Score = 82.5 bits (204), Expect = 5e-19
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
V K G +LG ++ GG D + V + Q G AA +++L GD I A+NG+
Sbjct: 9 TVVELMKKEGT-TLGLTVSGGIDK---DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGI 64
Query: 282 PLENKTHAEAIAMFK 296
L H E I++ K
Sbjct: 65 NLAKFRHDEIISLLK 79
Score = 72.1 bits (177), Expect = 3e-15
Identities = 23/116 (19%), Positives = 38/116 (32%), Gaps = 4/116 (3%)
Query: 1 MEKQFKVFRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIK 59
K V ++K + LG+ + GG +S++ GG R + VGD +
Sbjct: 4 SFKGSTVVELMKKEGTTLGLTVS---GGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKA 60
Query: 60 VNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKN 115
VN L E L N V + + + + L K+
Sbjct: 61 VNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEG 116
Score = 70.5 bits (173), Expect = 9e-15
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 10 VVKDDSNELGIYIE--RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
+ + N G I D P +I+ + PGG R+G GD L+ V+ RL G
Sbjct: 111 TLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLG 170
Query: 68 LTIQEAREALNNKDSHVEIVICRNP 92
T EA L ++I +
Sbjct: 171 TTHAEAMSILKQCGQEATLLIEYDV 195
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 83.3 bits (206), Expect = 3e-20
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
V K PG +LG S+ K I + I + + L GD I++I+G
Sbjct: 16 PLMVEIVKTPGS-ALGISLTTTSLRNKS--VITIDRIKPASVVDRSGALHPGDHILSIDG 72
Query: 281 VPLENKTHAEAIAMFKD 297
+E+ + EA +
Sbjct: 73 TSMEHCSLLEATKLLAS 89
Score = 71.3 bits (175), Expect = 7e-16
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 9 RVVKDDSNELGIYIERQDGGAHF--SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK 66
+VK + LGI + + S I I+P + R G H GD ++ ++ ++
Sbjct: 20 EIVKTPGSALGISLT---TTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSME 76
Query: 67 GLTIQEAREALNNKDSHVEIVICRNPDDAKSAT 99
++ EA + L + V + I P +
Sbjct: 77 HCSLLEATKLLASISEKVRLEILPVPQSQRPLR 109
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 82.0 bits (203), Expect = 4e-20
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
S+ F V + GF + GG+D N+ + + + G+AA+ + GD +++
Sbjct: 1 SMDSFKVVLEGPAP---WGFRLQGGKDF---NVPLSISRLTPGGKAAQA-GVAVGDWVLS 53
Query: 278 INGVPLENKTHAEAIAMFK 296
I+G + TH EA +
Sbjct: 54 IDGENAGSLTHIEAQNKIR 72
Score = 53.5 bits (129), Expect = 1e-09
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 8 FRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK 66
F+VV + G ++ GG F+ P IS + PGG + G VGD ++ ++ +
Sbjct: 5 FKVVLEGPAPWGFRLQ---GGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAG 60
Query: 67 GLTIQEAREALNNKDSHVEIVICRNP 92
LT EA+ + + + + R
Sbjct: 61 SLTHIEAQNKIRACGERLSLGLSRAI 86
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 83.0 bits (205), Expect = 4e-20
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKG-NLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
V P G + G + + + + I A L+ GD ++AING
Sbjct: 17 TEVVLTADPVT-GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 75
Query: 281 VPLENKTHAEAIAMFKD 297
+P E+ T EA + +D
Sbjct: 76 IPTEDSTFEEANQLLRD 92
Score = 64.1 bits (156), Expect = 4e-13
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 10 VVKDDSNELGIYIE--RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
+ D GI ++ SP LIS+IE R G +GD ++ +N +
Sbjct: 21 LTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTED 80
Query: 68 LTIQEAREALNNKDSHVEIVICRNPDDAKS 97
T +EA + L + ++ + D A+S
Sbjct: 81 STFEEANQLLRDSSITSKVTLEIEFDVAES 110
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 81.7 bits (202), Expect = 6e-20
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPK-----GNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
V +K P LGFSI GG + GIFV + G A++ L+ GD+II
Sbjct: 6 RVRVEKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQ 60
Query: 278 INGVPLENKTHAEAIAMFKD 297
NG N H +A+++ K
Sbjct: 61 ANGYSFINIEHGQAVSLLKT 80
Score = 50.1 bits (120), Expect = 2e-08
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 5 FKVFRVVKDDSNELGIYI------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELI 58
RV + ELG I ++ ++P G GD++I
Sbjct: 2 SMEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGP--ASKLLQPGDKII 59
Query: 59 KVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
+ N + +A L + VE++I R
Sbjct: 60 QANGYSFINIEHGQAVSLLKTFQNTVELIIVR 91
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 80.8 bits (200), Expect = 1e-19
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
S+S ++V+ GF + GG+D N+ + + ++ G A +R GD +++
Sbjct: 1 SMSNYSVSLVGPAP---WGFRLQGGKD---FNMPLTISSLKDGG-KAAQANVRIGDVVLS 53
Query: 278 INGVPLENKTHAEAIAMFK 296
I+G+ + TH EA K
Sbjct: 54 IDGINAQGMTHLEAQNKIK 72
Score = 51.1 bits (123), Expect = 8e-09
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 8 FRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK 66
+ V G ++ GG F+ P IS ++ GG + +GD ++ ++ +
Sbjct: 5 YSVSLVGPAPWGFRLQ---GGKDFNMPLTISSLKDGGKAAQ-ANVRIGDVVLSIDGINAQ 60
Query: 67 GLTIQEAREALNNKDSHVEIVICRNPD 93
G+T EA+ + + + + R D
Sbjct: 61 GMTHLEAQNKIKGCTGSLNMTLQRESD 87
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 81.2 bits (201), Expect = 1e-19
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
V Q G GF++ GG + + V I G+AA ++K+R GDE++ ING
Sbjct: 13 VPVQLQGGAP---WGFTLKGGLEH---CEPLTVSKIEDGGKAALSQKMRTGDELVNINGT 66
Query: 282 PLENKTHAEAIAMFK 296
PL + EA+ + K
Sbjct: 67 PLYG-SRQEALILIK 80
Score = 55.4 bits (134), Expect = 3e-10
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 5 FKVFRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
F+ V G ++ GG P +S IE GG + GDEL+ +N
Sbjct: 10 FQYVPVQLQGGAPWGFTLK---GGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGT 66
Query: 64 RLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSA 98
L G + QEA + +++++ R S
Sbjct: 67 PLYG-SRQEALILIKGSFRILKLIVRRRNSGPSSG 100
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 81.4 bits (201), Expect = 2e-19
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAEN 266
S+ + P + V + LG SI G GIF+ + G +
Sbjct: 2 SSGSSGSPGNRENKEKKVFISLVGSR-GLGCSISSGPIQ---KPGIFISHVK-PGSLSAE 56
Query: 267 EKLREGDEIIAINGVPLENKTHAEAIAMFK 296
L GD+I+ +NGV N H EA+ + K
Sbjct: 57 VGLEIGDQIVEVNGVDFSNLDHKEAVNVLK 86
Score = 52.9 bits (127), Expect = 4e-09
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 6 KVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
K + S LG I G ISH++PG G +GD++++VN
Sbjct: 17 KKVFISLVGSRGLGCSIS---SGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVD 72
Query: 65 LKGLTIQEAREALNNKDSHVEIVICRNPDD 94
L +EA L + S ++ +
Sbjct: 73 FSNLDHKEAVNVLKSSRSLTISIVAAAGRE 102
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 80.6 bits (199), Expect = 2e-19
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPK-----GNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
V +K P LGFSI GG + GIFV + G A++ L+ GD+II
Sbjct: 14 RVRVEKDPE---LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQ 68
Query: 278 INGVPLENKTHAEAIAMFKD 297
NG N H +A+++ K
Sbjct: 69 ANGYSFINIEHGQAVSLLKT 88
Score = 50.5 bits (121), Expect = 2e-08
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 2 EKQFKVFRVVKDDSNELGIYI------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGD 55
E + RV + ELG I ++ ++P G GD
Sbjct: 7 ELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGP--ASKLLQPGD 64
Query: 56 ELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
++I+ N + +A L + VE++I R
Sbjct: 65 KIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR 99
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 82.9 bits (205), Expect = 3e-19
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPK-GNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
V P G + G + + + + I A L+ GD ++AING
Sbjct: 8 TEVVLTADPVT-GFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAING 66
Query: 281 VPLENKTHAEAIAMFKD 297
+P E+ T EA + +D
Sbjct: 67 IPTEDSTFEEANQLLRD 83
Score = 81.0 bits (200), Expect = 2e-18
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 9 RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
++ K S ELGI I P +IS I+ G HR G +GD+L+ +++ RL
Sbjct: 112 KLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSC 171
Query: 69 TIQEAREALNNKDSHVEIVICRNPD 93
++++A + L + V++ I ++ D
Sbjct: 172 SMEDAVQILQQCEDLVKLKIRKDED 196
Score = 79.4 bits (196), Expect = 6e-18
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 202 ATPNNSNATVKRPKSLSLS------MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVK 255
+ S T++ ++ S F V K LG +I G+ + +
Sbjct: 83 DSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSV-ELGITISSPSSRKPGD-PLVIS 140
Query: 256 TIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
I + A L GD+++AI+ + L++ + +A+ + +
Sbjct: 141 DIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQ 182
Score = 71.0 bits (174), Expect = 6e-15
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 10 VVKDDSNELGIYIE--RQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
+ D GI ++ SP LIS+IE R G +GD ++ +N +
Sbjct: 12 LTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTED 71
Query: 68 LTIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQ 105
T +EA + L + ++ + D A+S
Sbjct: 72 STFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTF 109
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 79.7 bits (197), Expect = 3e-19
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 219 LSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
+ + VT K G + GFS+ G G++VK I +G + L+ D ++ +
Sbjct: 5 VELHKVTLYKDSGMEDFGFSVADGLLEK----GVYVKNIRPAG-PGDLGGLKPYDRLLQV 59
Query: 279 NGVPLENKTHAEAIAMFK 296
N V + + +
Sbjct: 60 NHVRTRDFDCCLVVPLIA 77
Score = 51.2 bits (123), Expect = 7e-09
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 9 RVVKDDSNE-LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
+ KD E G + G + +I P G G D L++VN R +
Sbjct: 11 TLYKDSGMEDFGFSVA---DGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRD 66
Query: 68 LTIQEAREALNNKDSHVEIVICRNP 92
+ + +++VI RNP
Sbjct: 67 FDCCLVVPLIAESGNKLDLVISRNP 91
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 79.9 bits (197), Expect = 5e-19
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Query: 205 NNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAA 264
++ ++ + + GF++ GG D + + V + A
Sbjct: 2 SSPEKPTPNGGIPHDNLVLIRMKPDEN-GRFGFNVKGGYDQ---KMPVIVSRVAPGTPAD 57
Query: 265 ENE-KLREGDEIIAINGVPLENKTHAEAIAMFK 296
+L EGD+++ ING + TH + + K
Sbjct: 58 LCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 90
Score = 52.5 bits (126), Expect = 4e-09
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 9 RVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHR-DGRFHVGDELIKVNDKRLK 66
R+ D++ G ++ GG P ++S + PG R + GD+++ +N + +
Sbjct: 22 RMKPDENGRFGFNVK---GGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 78
Query: 67 GLTIQEAREALNNKDSHVEIVI 88
T + + +
Sbjct: 79 EHTHDQVVLFIKASCERHSGEL 100
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 79.4 bits (196), Expect = 6e-19
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
+ V +K G + LG ++V + + G A + L GD + AIN
Sbjct: 9 NCREVHLEKRRG-EGLGVALVESGWGSLLP-TAVIANLLHGGPAERSGALSIGDRLTAIN 66
Query: 280 GVPLENKTHAEAIAMFKDIFPQSS 303
G L A A ++ Q+S
Sbjct: 67 GTSLVGLPLAACQAAVRETKSQTS 90
Score = 74.0 bits (182), Expect = 5e-17
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
+ + K LG+ + G+ +I+++ GG R G +GD L +N
Sbjct: 7 GDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAIN 66
Query: 62 DKRLKGLTIQEAREALNN--KDSHVEIVICRNP 92
L GL + + A+ + V + I P
Sbjct: 67 GTSLVGLPLAACQAAVRETKSQTSVTLSIVHCP 99
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 78.8 bits (195), Expect = 6e-19
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+VT + GF +VGGRD + + + + +G A L GD I AING
Sbjct: 10 HSVTLRGPSP---WGFRLVGGRDF---SAPLTISRVH-AGSKAALAALCPGDLIQAINGE 62
Query: 282 PLENKTHAEAIAMFK 296
E TH EA K
Sbjct: 63 STELMTHLEAQNRIK 77
Score = 53.0 bits (128), Expect = 2e-09
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 6 KVFRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
V + G + GG FS P IS + G GD + +N +
Sbjct: 8 MPHSVTLRGPSPWGFRLV---GGRDFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGES 63
Query: 65 LKGLTIQEAREALNNKDSHVEIVICRNP 92
+ +T EA+ + H+ + + P
Sbjct: 64 TELMTHLEAQNRIKGCHDHLTLSVSSGP 91
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 79.9 bits (197), Expect = 7e-19
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 198 SNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTI 257
+ ++ N + L SM V F+KG +G + GG D +GIFV +
Sbjct: 7 HHHHSSGGTENLYFQGHMILRPSMKLVKFRKGDS---VGLRLAGGND-----VGIFVAGV 58
Query: 258 FQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
A E L EGD+I+ +N V N EA+
Sbjct: 59 -LEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLL 96
Score = 54.4 bits (131), Expect = 1e-09
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
V + +G+ + GG + ++ + ++G GD++++VN+ +
Sbjct: 33 VKFRKGDSVGLRLA---GGNDVGIF-VAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNII 87
Query: 70 IQEAREALNNKDS--HVEIVICRNPDD 94
+EA L + V I+ + D
Sbjct: 88 REEAVLFLLDLPKGEEVTILAQKKKDV 114
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 79.5 bits (196), Expect = 7e-19
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAE-NEKLREGDEIIAINGV 281
+ + GF++ GG D + + V + A +L EGD+++ ING
Sbjct: 18 LIRMKPDEN-GRFGFNVKGGYDQ---KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGR 73
Query: 282 PLENKTHAEAIAMFK 296
+ TH + + K
Sbjct: 74 DIAEHTHDQVVLFIK 88
Score = 52.6 bits (126), Expect = 5e-09
Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 9 RVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHR-DGRFHVGDELIKVNDKRLK 66
R+ D++ G ++ GG P ++S + PG R + GD+++ +N + +
Sbjct: 20 RMKPDENGRFGFNVK---GGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 76
Query: 67 GLTIQEA----REALNNKDSHVEIVICRNP 92
T + + + + +++ N
Sbjct: 77 EHTHDQVVLFIKASCERHSGELMLLVRPNA 106
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 79.9 bits (197), Expect = 8e-19
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKG------NLGIFVKTIFQSGQAAENEKLREGDEII 276
V K +K LGF I G GIF+ + G A L DE++
Sbjct: 32 RVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVL 91
Query: 277 AINGVPLENKTHAEAIAMFKD 297
+NG+ + K+ + M
Sbjct: 92 EVNGIEVSGKSLDQVTDMMIA 112
Score = 65.3 bits (159), Expect = 2e-13
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 1 MEKQFKVFRVVKDDSNE-LGIYI-------ERQDGGAHFSPYLISHIEPGGAIHRDGRFH 52
+ + + R+ K + + LG YI G IS + PGG G
Sbjct: 26 LPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLA 85
Query: 53 VGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVI 88
V DE+++VN + G ++ + + + ++ I +
Sbjct: 86 VNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITV 121
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 81.5 bits (201), Expect = 9e-19
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
V + + LG S+ GG + G+F+ + + G A++ L+ GDEI+ ING
Sbjct: 87 EVRLDR-LHPEGLGLSVRGGLEF---GCGLFISHLIK-GGQADSVGLQVGDEIVRINGYS 141
Query: 283 LENKTHAEAIAMFK 296
+ + TH E I + +
Sbjct: 142 ISSCTHEEVINLIR 155
Score = 55.0 bits (132), Expect = 3e-09
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 2 EKQFKVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
++ K R+ + LG+ + GG ISH+ GG G VGDE++++
Sbjct: 82 SRKLKEVRLDRLHPEGLGLSVR---GGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRI 137
Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVICRNP 92
N + T +E + + V I +
Sbjct: 138 NGYSISSCTHEEVINLIRTEK-TVSIKVRHIG 168
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 78.5 bits (194), Expect = 9e-19
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 220 SM-FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
SM TV GF I GGRD + I V + + A++ LR GD I+AI
Sbjct: 1 SMALTVDVAGPAP---WGFRITGGRDF---HTPIMVTKVAE-RGKAKDADLRPGDIIVAI 53
Query: 279 NGVPLENKTHAEAIAMFK 296
NG E HAEA + +
Sbjct: 54 NGESAEGMLHAEAQSKIR 71
Score = 50.0 bits (120), Expect = 2e-08
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 7 VFRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
V G I GG F P +++ + G GD ++ +N +
Sbjct: 3 ALTVDVAGPAPWGFRIT---GGRDFHTPIMVTKVAERGKAKD-ADLRPGDIIVAINGESA 58
Query: 66 KGLTIQEAREALNNKDSHVEIVICR 90
+G+ EA+ + S + + + R
Sbjct: 59 EGMLHAEAQSKIRQSPSPLRLQLDR 83
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 78.1 bits (193), Expect = 1e-18
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
M V K + + + G IFVK + ++G A ++ L EGD I+ ING
Sbjct: 1 MIGVLLMKSR--ANEEYGLRLGS-------QIFVKEMTRTGLATKDGNLHEGDIILKING 51
Query: 281 VPLENKTHAEAIAMFK 296
EN + +A + +
Sbjct: 52 TVTENMSLTDARKLIE 67
Score = 64.3 bits (157), Expect = 1e-13
Identities = 13/62 (20%), Positives = 32/62 (51%)
Query: 32 SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRN 91
S + + G +DG H GD ++K+N + +++ +AR+ + +++V+ R+
Sbjct: 21 SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRD 80
Query: 92 PD 93
+
Sbjct: 81 LE 82
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 78.8 bits (194), Expect = 2e-18
Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 202 ATPNNSNATVKRPKSLSLS-MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQS 260
+ + + SL+ + G LG ++ + + +
Sbjct: 8 SKNEKEQLSKAKASVSSLNKVIQTKLTVGN--LGLGLVVIQNGP------YLQISHLINK 59
Query: 261 GQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKDI 298
G AA + L+ GD +I++ + T E + + ++I
Sbjct: 60 GAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNI 97
Score = 57.6 bits (139), Expect = 9e-11
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 11 VKDDSNELGIYIERQDGGAHFS-----PYL-ISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
V + + + + G PYL ISH+ GA DG GD LI V
Sbjct: 22 VSSLNKVIQTKLTVGNLGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHAN 81
Query: 65 LKGLTIQEAREALNN--KDSHVEIVICRNPDD 94
+ G T++E + L N + ++I R +
Sbjct: 82 VLGYTLREFLKLLQNITIGTVLQIKAYRGFLE 113
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 77.7 bits (192), Expect = 2e-18
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
++VT GF + GG+D N+ + + I +AA++ +L +GD ++AI+GV
Sbjct: 3 YSVTLTGPGP---WGFRLQGGKDF---NMPLTISRITPGSKAAQS-QLSQGDLVVAIDGV 55
Query: 282 PLENKTHAEAIAMFK 296
+ TH EA K
Sbjct: 56 NTDTMTHLEAQNKIK 70
Score = 50.7 bits (122), Expect = 1e-08
Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 7 VFRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
+ V G ++ GG F+ P IS I PG + + GD ++ ++
Sbjct: 2 AYSVTLTGPGPWGFRLQ---GGKDFNMPLTISRITPGSKAAQ-SQLSQGDLVVAIDGVNT 57
Query: 66 KGLTIQEAREALNNKDSHVEIVICRNP 92
+T EA+ + + ++ + + ++
Sbjct: 58 DTMTHLEAQNKIKSASYNLSLTLQKSK 84
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 77.8 bits (192), Expect = 2e-18
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
S++ + Q GF +VGG+D + + + G A L GD I A
Sbjct: 1 SMTTQQIDLQGPGP---WGFRLVGGKDF---EQPLAISRVT-PGSKAALANLCIGDVITA 53
Query: 278 INGVPLENKTHAEAIAMFK 296
I+G N TH EA K
Sbjct: 54 IDGENTSNMTHLEAQNRIK 72
Score = 52.4 bits (126), Expect = 3e-09
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 7 VFRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
++ G + GG F P IS + PG +GD + ++ +
Sbjct: 4 TQQIDLQGPGPWGFRLV---GGKDFEQPLAISRVTPGSKAAL-ANLCIGDVITAIDGENT 59
Query: 66 KGLTIQEAREALNNKDSHVEIVICRNPDDA 95
+T EA+ + ++ + + R+ ++
Sbjct: 60 SNMTHLEAQNRIKGCTDNLTLTVARSEHES 89
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 78.3 bits (193), Expect = 2e-18
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 203 TPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQ 262
+ +S ++ + V QKG LG SIV G GI+V + G
Sbjct: 2 SSGSSGGERRKDRPYVEEPRHVKVQKGSE--PLGISIVSGEKG-----GIYVSKVTV-GS 53
Query: 263 AAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
A L GD+++ NG+ L + T +A +
Sbjct: 54 IAHQAGLEYGDQLLEFNGINLRSATEQQARLIIG 87
Score = 55.6 bits (134), Expect = 4e-10
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
+ +V K LGI I G +S + G H+ G GD+L++ N L
Sbjct: 21 RHVKVQKGSEP-LGISIV---SGEK-GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINL 74
Query: 66 KGLTIQEAREALNNKDSHVEIVICRNPDDAKSATN 100
+ T Q+AR + + + I+ NP + +++
Sbjct: 75 RSATEQQARLIIGQQCDTITILAQYNPHVHQLSSH 109
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 77.8 bits (192), Expect = 2e-18
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+V+ GF + GG+D N+ + + ++ G A +R GD +++I+G+
Sbjct: 7 GSVSLVGPAP---WGFRLQGGKDF---NMPLTISSLK-DGGKASQAHVRIGDVVLSIDGI 59
Query: 282 PLENKTHAEAIAMFK 296
+ TH EA K
Sbjct: 60 SAQGMTHLEAQNKIK 74
Score = 48.9 bits (117), Expect = 6e-08
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 27 GGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVE 85
GG F+ P IS ++ GG + +GD ++ ++ +G+T EA+ + +
Sbjct: 23 GGKDFNMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLN 81
Query: 86 IVICRNPDDAKS 97
+ + R AKS
Sbjct: 82 MTLQRASAAAKS 93
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 76.2 bits (188), Expect = 5e-18
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
VT K + G + IFVK I Q AA + ++EGD ++ ING
Sbjct: 2 SKVTLVKSRKNEEYGLRLASH---------IFVKEISQDSLAARDGNIQEGDVVLKINGT 52
Query: 282 PLENKTHAEAIAMFK 296
EN + +A + +
Sbjct: 53 VTENMSLTDAKTLIE 67
Score = 62.7 bits (153), Expect = 5e-13
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
KV V + E G+ + F + I RDG GD ++K+N
Sbjct: 2 SKVTLVKSRKNEEYGLRL----ASHIF----VKEISQDSLAARDGNIQEGDVVLKINGTV 53
Query: 65 LKGLTIQEAREALNNKDSHVEIVICRN 91
+ +++ +A+ + +++V+ R+
Sbjct: 54 TENMSLTDAKTLIERSKGKLKMVVQRD 80
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 76.6 bits (189), Expect = 5e-18
Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 216 SLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEI 275
S S TV GF I GGRD + I V + + AE LR GD I
Sbjct: 2 SSGSSGLTVDVAGPAP---WGFRISGGRDF---HTPIIVTKVTE-RGKAEAADLRPGDII 54
Query: 276 IAINGVPLENKTHAEAIAMFK 296
+AING EN HAEA + +
Sbjct: 55 VAINGQSAENMLHAEAQSKIR 75
Score = 52.7 bits (127), Expect = 2e-09
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 6 KVFRVVKDDSNELGIYIERQDGGA-HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
V G I GG +P +++ + G GD ++ +N +
Sbjct: 6 SGLTVDVAGPAPWGFRIS---GGRDFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQS 61
Query: 65 LKGLTIQEAREALNNKDSHVEIVICRNPD 93
+ + EA+ + S + + + R+
Sbjct: 62 AENMLHAEAQSKIRQSASPLRLQLDRSSG 90
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 75.4 bits (186), Expect = 1e-17
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
S+ + TV KGP GF+I G VK I S ++ L+EGD I+
Sbjct: 1 SMELITVHIVKGP--MGFGFTIADSPGGG----GQRVKQIVDSPRSR---GLKEGDLIVE 51
Query: 278 INGVPLENKTHAEAIAMFKD 297
+N ++ TH + + M +
Sbjct: 52 VNKKNVQALTHNQVVDMLVE 71
Score = 33.0 bits (76), Expect = 0.019
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
+ +VK G I + I R GD +++VN K
Sbjct: 3 ELITVHIVKGP-MGFGFTIA---DSPGGGGQRVKQIVDSP---RSRGLKEGDLIVEVNKK 55
Query: 64 RLKGLTIQEAREALNN--KDSHVEIVICR 90
++ LT + + L K S V +++ R
Sbjct: 56 NVQALTHNQVVDMLVESPKGSEVTLLVQR 84
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 75.1 bits (185), Expect = 2e-17
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
S S V GF + GG D N + + I G A L GD I+A
Sbjct: 3 SGSSGNVVLPGPAP---WGFRLSGGIDF---NQPLVITRIT-PGSKAAAANLCPGDVILA 55
Query: 278 INGVPLENKTHAEAIAMFK 296
I+G E+ THA+A K
Sbjct: 56 IDGFGTESMTHADAQDRIK 74
Score = 52.7 bits (127), Expect = 3e-09
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 8 FRVVKDDSNELGIYIERQDGGAHFS-PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLK 66
VV G + GG F+ P +I+ I PG GD ++ ++ +
Sbjct: 7 GNVVLPGPAPWGFRLS---GGIDFNQPLVITRITPGSKAAA-ANLCPGDVILAIDGFGTE 62
Query: 67 GLTIQEAREALNNKDSHVEIVICRNPDDAKS 97
+T +A++ + + + I R S
Sbjct: 63 SMTHADAQDRIKAASYQLCLKIDRAETRLWS 93
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 74.7 bits (184), Expect = 2e-17
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
T+T KG + GF+I G VK I L EGD I+ IN
Sbjct: 12 MTLTIVKGA--QGFGFTIADSPT------GQRVKQILDIQGCPG---LCEGDLIVEINQQ 60
Query: 282 PLENKTHAEAIAMFKDI 298
++N +H E + + KD
Sbjct: 61 NVQNLSHTEVVDILKDC 77
Score = 34.3 bits (79), Expect = 0.007
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 38 HIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN--KDSHVEIVICRNP 92
++ I GD ++++N + ++ L+ E + L + S ++I R
Sbjct: 35 RVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGS 91
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 73.6 bits (181), Expect = 7e-17
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
VT K + G + IFVK I Q AA + ++EGD ++ ING
Sbjct: 5 KVTLVKSAKNEEYGLRLASH---------IFVKEISQDSLAARDGNIQEGDVVLKINGTV 55
Query: 283 LENKTHAEAIAMFK 296
EN + +A + +
Sbjct: 56 TENMSLTDAKTLIE 69
Score = 61.3 bits (149), Expect = 2e-12
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 10 VVKDDSNE-LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
+VK NE G+ + S + I RDG GD ++K+N + +
Sbjct: 8 LVKSAKNEEYGLRLA--------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENM 59
Query: 69 TIQEAREALNNKDSHVEIVICRNP 92
++ +A+ + +++V+ R+
Sbjct: 60 SLTDAKTLIERSKGKLKMVVQRDE 83
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 74.7 bits (183), Expect = 8e-17
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 195 HNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSP-------- 246
H+ S+ + + + + ++G LGFSI GG D
Sbjct: 5 HHHSSGVDLGTENLYFQSMVQRVEI----HKLRQGENL-ILGFSIGGGIDQDPSQNPFSE 59
Query: 247 -KGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
K + GI+V + + G AE L+ GD+I+ +NG + TH +A
Sbjct: 60 DKTDKGIYVTRVSEGG-PAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLT 109
Score = 47.7 bits (113), Expect = 4e-07
Identities = 19/105 (18%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 1 MEKQFKVFRVVKDDSNELGIYI----ERQDGGAHFS------PYLISHIEPGGAIHRDGR 50
M ++ ++ ++ + ++ LG I ++ FS ++ + GG G
Sbjct: 23 MVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG- 81
Query: 51 FHVGDELIKVNDKRLKGLTIQEAREAL-NNKDSHVEIVICRNPDD 94
+GD++++VN + +T +AR+ L + V +++ R
Sbjct: 82 LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQ 126
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 76.5 bits (188), Expect = 8e-17
Identities = 26/96 (27%), Positives = 32/96 (33%), Gaps = 7/96 (7%)
Query: 201 AATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQS 260
TV R L F V K G K LG S+ G + + Q
Sbjct: 94 TTYEKAVTLTVFRADPPELEKFNVDLMKKAG-KELGLSLSPNEI------GCTIADLIQG 146
Query: 261 GQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
+ KL+ GD I NG LE A+FK
Sbjct: 147 QYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFK 182
Score = 76.1 bits (187), Expect = 1e-16
Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
+ + +G + GG+++ G + ++ GQ A +++L+ D I ING
Sbjct: 20 ILIELKVEKK--PMGVIVCGGKNNHVTT-GCVITHVYPEGQVAADKRLKIFDHICDINGT 76
Query: 282 PL--ENKTHAEAIAMFKDIFPQSSKLS 306
P+ + T + +F + ++ L+
Sbjct: 77 PIHVGSMTTLKVHQLFHTTYEKAVTLT 103
Score = 70.3 bits (172), Expect = 1e-14
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 9 RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
++K ELG+ + + G I+ + G D + GD + K N L+GL
Sbjct: 118 DLMKKAGKELGLSLSPNEIGC-----TIADLIQGQYPEIDSKLQRGDIITKFNGDALEGL 172
Query: 69 TIQEAREALNNKDSHVEIVICR 90
Q + V + + R
Sbjct: 173 PFQVCYALFKGANGKVSMEVTR 194
Score = 51.8 bits (124), Expect = 4e-08
Identities = 12/99 (12%), Positives = 32/99 (32%), Gaps = 2/99 (2%)
Query: 14 DSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL--KGLTIQ 71
+ +G+ + + +I+H+ P G + D R + D + +N + +T
Sbjct: 27 EKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTL 86
Query: 72 EAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKN 110
+ + + + D + +L
Sbjct: 87 KVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGK 125
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 73.1 bits (180), Expect = 9e-17
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
+KGP GF + G KG LG +++ + + G AE L GD ++ +NG
Sbjct: 6 LCCLEKGP--NGYGFHLHGE----KGKLGQYIRLV-EPGSPAEKAGLLAGDRLVEVNGEN 58
Query: 283 LENKTHAEAIAMFK 296
+E +TH + ++ +
Sbjct: 59 VEKETHQQVVSRIR 72
Score = 47.3 bits (113), Expect = 2e-07
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
++ N G ++ G I +EPG + G GD L++VN + ++ T
Sbjct: 8 CLEKGPNGYGFHLH---GEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKET 63
Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
Q+ + + V +++ D
Sbjct: 64 HQQVVSRIRAALNAVRLLVVDPETD 88
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 73.6 bits (181), Expect = 1e-16
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 12/83 (14%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRD---------SPKGNLGIFVKTIFQSGQAAENEKLREGD 273
V K GF++ G V + G AA+ +R+GD
Sbjct: 9 VVRIVKSES--GYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGG-AADRAGVRKGD 65
Query: 274 EIIAINGVPLENKTHAEAIAMFK 296
I+ +NGV +E TH + + + +
Sbjct: 66 RILEVNGVNVEGATHKQVVDLIR 88
Score = 46.6 bits (111), Expect = 4e-07
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 36 ISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDDA 95
+S + PGGA R G GD +++VN ++G T ++ + + + + + + ++
Sbjct: 47 VSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESES 105
Query: 96 K 96
K
Sbjct: 106 K 106
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 72.4 bits (178), Expect = 2e-16
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
S+ + K LG +I + I V I + G A + + GDE+ +N
Sbjct: 4 SVKIIRLVKNRE--PLGATIKKDEQTG----AIIVARIMRGGAADRSGLIHVGDELREVN 57
Query: 280 GVPLENKTHAEAIAMFKD 297
G+P+E+K E I +
Sbjct: 58 GIPVEDKRPEEIIQILAQ 75
Score = 65.1 bits (159), Expect = 7e-14
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
K+ R+VK+ LG I+ +++ I GGA R G HVGDEL +VN +
Sbjct: 6 KIIRLVKNREP-LGATIK---KDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPV 61
Query: 66 KGLTIQEAREALNNKDSHVEIVICRNPDDA 95
+ +E + L + I +
Sbjct: 62 EDKRPEEIIQILAQSQGAITFKIIPGSKEE 91
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 72.5 bits (178), Expect = 3e-16
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
++ V +K LG ++ D + + I + G A ++ L EGDE++ IN
Sbjct: 25 TVKIVRIEKARDI-PLGATVRNEMD------SVIISRIVKGGAAEKSGLLHEGDEVLEIN 77
Query: 280 GVPLENKTHAEAIAMFKD 297
G+ + K E + D
Sbjct: 78 GIEIRGKDVNEVFDLLSD 95
Score = 67.5 bits (165), Expect = 2e-14
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
+ K+ R+ K LG + + +IS I GGA + G H GDE++++N
Sbjct: 23 GETVKIVRIEKARDIPLGATVRNEMD-----SVIISRIVKGGAAEKSGLLHEGDEVLEIN 77
Query: 62 DKRLKGLTIQEAREALNNKDSHVEIVICRNPDDA 95
++G + E + L++ + V+ + +
Sbjct: 78 GIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSGPS 111
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 70.2 bits (172), Expect = 1e-15
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
++ F G LGF++ +GN + V + +A REGD I++I V
Sbjct: 26 SIRFTAEEG--DLGFTL-------RGNAPVQVHFLDPYC-SASVAGAREGDYIVSIQLVD 75
Query: 283 LENKTHAEAIAMFK 296
+ T +E + + K
Sbjct: 76 CKWLTLSEVMKLLK 89
Score = 42.5 bits (100), Expect = 1e-05
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 20 IYIERQDGGAHFS-----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
I ++G F+ P + ++P + G GD ++ + K LT+ E
Sbjct: 27 IRFTAEEGDLGFTLRGNAPVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVM 85
Query: 75 EALNN 79
+ L +
Sbjct: 86 KLLKS 90
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 69.7 bits (171), Expect = 2e-15
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
T +KGP GF++ + P G F++++ AE LR D I+ +NGV
Sbjct: 12 LCTMKKGP--SGYGFNLHSDKSKP----GQFIRSVDPDS-PAEASGLRAQDRIVEVNGVC 64
Query: 283 LENKTHAEAIAMFK 296
+E K H + ++ +
Sbjct: 65 MEGKQHGDVVSAIR 78
Score = 46.2 bits (110), Expect = 5e-07
Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
+K + G + I ++P G D +++VN ++G
Sbjct: 14 TMKKGPSGYGFNLH---SDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
Query: 70 IQEAREALNNKDSHVEIVICRNPDDA 95
+ A+ ++++ D
Sbjct: 70 HGDVVSAIRAGGDETKLLVVDRETDE 95
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 69.4 bits (170), Expect = 2e-15
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 220 SMFTVTFQKGPGQ-KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
S ++ + PG+ GF+I GIFV ++ ++G AE +L+ DEIIAI
Sbjct: 3 SDMRISINQTPGKSLDFGFTIKWDIP------GIFVASV-EAGSPAEFSQLQVDDEIIAI 55
Query: 279 NGVPLENKTHAEAIAMFK 296
N E
Sbjct: 56 NNTKFSYNDSKEWEEAMA 73
Score = 47.0 bits (112), Expect = 2e-07
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 4 QFKVFRVV----KDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
QF R+ S + G I+ G ++ +E G + V DE+I
Sbjct: 1 QFSDMRISINQTPGKSLDFGFTIKWDIPGI-----FVASVEAGSPAEF-SQLQVDDEIIA 54
Query: 60 VNDKRLKGLTIQEAREALNN--KDSHVEIVICRN 91
+N+ + +E EA+ + H+ + + R
Sbjct: 55 INNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRY 88
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 69.0 bits (169), Expect = 3e-15
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 222 FTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGV 281
V K SLG +I F+K I G + + GD I +ING
Sbjct: 7 KEVNVYKSED--SLGLTITDNGVGY-----AFIKRIKDGGVIDSVKTICVGDHIESINGE 59
Query: 282 PLENKTHAEAIAMFKDI 298
+ H + K++
Sbjct: 60 NIVGWRHYDVAKKLKEL 76
Score = 60.5 bits (147), Expect = 4e-12
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
K V K + + LG+ I G F I I+ GG I VGD + +N +
Sbjct: 5 IEKEVNVYKSEDS-LGLTITDNGVGYAF----IKRIKDGGVIDSVKTICVGDHIESINGE 59
Query: 64 RLKGLTIQEAREALNNKDSHVEIVI 88
+ G + + L +
Sbjct: 60 NIVGWRHYDVAKKLKELKKEELFTM 84
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 68.9 bits (169), Expect = 4e-15
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
+ +KGP + GF + + G G F+ + A+ ++ GD ++A+ G
Sbjct: 6 CLHLEKGP--QGFGFLLREEK-GLDGRPGQFLWEVDPGL-PAKKAGMQAGDRLVAVAGES 61
Query: 283 LENKTHAEAIAMFK 296
+E H E ++ +
Sbjct: 62 VEGLGHEETVSRIQ 75
Score = 49.6 bits (119), Expect = 3e-08
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
++ G + + G + ++PG + G GD L+ V + ++GL
Sbjct: 8 HLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLG 66
Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
+E + + S V + + D
Sbjct: 67 HEETVSRIQGQGSCVSLTVVDPEAD 91
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 68.2 bits (167), Expect = 7e-15
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 215 KSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDE 274
S TV K + GF I +L + V + +G +A KL GD+
Sbjct: 3 SGSSGVRHTVKIDKDTLLQDYGFHI-------SESLPLTVVAVT-AGGSAHG-KLFPGDQ 53
Query: 275 IIAINGVPLENKTHAEAIAMFK 296
I+ +N P E+ + A+ + +
Sbjct: 54 ILQMNNEPAEDLSWERAVDILR 75
Score = 52.4 bits (126), Expect = 3e-09
Identities = 14/86 (16%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 20 IYIERQDGGAHF-------SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQE 72
+ I++ + P + + GG+ G+ GD+++++N++ + L+ +
Sbjct: 12 VKIDKDTLLQDYGFHISESLPLTVVAVTAGGS--AHGKLFPGDQILQMNNEPAEDLSWER 69
Query: 73 AREALNNKDSHVEIVICRNPDDAKSA 98
A + L + + I + R S+
Sbjct: 70 AVDILREAEDSLSITVVRCTSSGPSS 95
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 67.7 bits (166), Expect = 7e-15
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
+KGP + GF++ + P G +++++ A LR D +I +NG
Sbjct: 7 LCHLRKGP--QGYGFNLHSDKSRP----GQYIRSVDPGS-PAARSGLRAQDRLIEVNGQN 59
Query: 283 LENKTHAEAIAMFK 296
+E HAE +A K
Sbjct: 60 VEGLRHAEVVASIK 73
Score = 43.0 bits (102), Expect = 5e-06
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
++ G + I ++PG R G D LI+VN + ++GL
Sbjct: 9 HLRKGPQGYGFNLH---SDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLR 64
Query: 70 IQEAREALNNKDSHVEIVICR 90
E ++ ++ +++
Sbjct: 65 HAEVVASIKAREDEARLLVVG 85
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 68.2 bits (167), Expect = 8e-15
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
K G S GFS+ +G G+++ I G A + D +I +NG
Sbjct: 11 LCYLVKEGG--SYGFSLKTV----QGKKGVYMTDITPQG-VAMRAGVLADDHLIEVNGEN 63
Query: 283 LENKTHAEAIAMFK 296
+E+ +H E + K
Sbjct: 64 VEDASHEEVVEKVK 77
Score = 47.0 bits (112), Expect = 4e-07
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 20 IYIERQDGGAHFS--------PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQ 71
Y+ ++ G FS ++ I P G R G D LI+VN + ++ + +
Sbjct: 12 CYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGV-LADDHLIEVNGENVEDASHE 70
Query: 72 EAREALNNKDSHVEIVICRNPDD 94
E E + S V ++ D
Sbjct: 71 EVVEKVKKSGSRVMFLLVDKETD 93
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 67.0 bits (164), Expect = 1e-14
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
V FQK + +G ++ + V I G L GDEI ING+
Sbjct: 4 LVQFQKNTDE-PMGITLKMNELN-----HCIVARIMHGGMIHRQGTLHVGDEIREINGIS 57
Query: 283 LENKTHAEAIAMFKDI 298
+ N+T + M +++
Sbjct: 58 VANQTVEQLQKMLREM 73
Score = 62.4 bits (152), Expect = 7e-13
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 6 KVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRL 65
++ + K+ +GI ++ + +++ I GG IHR G HVGDE+ ++N +
Sbjct: 3 RLVQFQKNTDEPMGITLKMNELN----HCIVARIMHGGMIHRQGTLHVGDEIREINGISV 58
Query: 66 KGLTIQEAREALNNKDSHVEIVI 88
T+++ ++ L + I
Sbjct: 59 ANQTVEQLQKMLREMRGSITFKI 81
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 67.0 bits (164), Expect = 2e-14
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 6/75 (8%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
+ F+K + +G + V I G L GDEI+ ING
Sbjct: 15 LIQFEKVTEE-PMGICLKLNEKQS-----CTVARILHGGMIHRQGSLHVGDEILEINGTN 68
Query: 283 LENKTHAEAIAMFKD 297
+ N + + K+
Sbjct: 69 VTNHSVDQLQKAMKE 83
Score = 66.6 bits (163), Expect = 2e-14
Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
++ + K +GI ++ + + ++ I GG IHR G HVGDE++++N
Sbjct: 10 GHMVRLIQFEKVTEEPMGICLKLNEKQSCT----VARILHGGMIHRQGSLHVGDEILEIN 65
Query: 62 DKRLKGLTIQEAREALNNKDSHVEIVICRNP 92
+ ++ + ++A+ + + + N
Sbjct: 66 GTNVTNHSVDQLQKAMKETKGMISLKVIPNQ 96
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 66.3 bits (162), Expect = 4e-14
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAEN 266
S+ + + +T ++G GF+I + V+ + G AE
Sbjct: 2 SSGSSGEGDPENGEKLQITIRRGKD--GFGFTICCDS-------PVRVQAVDSGG-PAER 51
Query: 267 EKLREGDEIIAINGVPLENKTHAEAIAMFK 296
L++ D ++ +N P+E+ E +
Sbjct: 52 AGLQQLDTVLQLNERPVEHWKCVELAHEIR 81
Score = 45.1 bits (107), Expect = 1e-06
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 20 IYIERQDGGAHFS-----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
I I R G F+ P + ++ GG R G D ++++N++ ++ E
Sbjct: 19 ITIRRGKDGFGFTICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELA 77
Query: 75 EALNNKDSHVEIVICRNP 92
+ + S + +++ R
Sbjct: 78 HEIRSCPSEIILLVWRVS 95
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 66.3 bits (162), Expect = 4e-14
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 223 TVTFQKGPGQKSLGFSIVGGR----DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
VT +K + + GF I R ++ + + I + A L+ GD + I
Sbjct: 18 LVTVEKQDNE-TFGFEIQSYRPQNQNACSSEMFTLICKIQE-DSPAHCAGLQAGDVLANI 75
Query: 279 NGVPLENKTHAEAIAMFKD 297
NGV E T+ + + + +
Sbjct: 76 NGVSTEGFTYKQVVDLIRS 94
Score = 40.5 bits (95), Expect = 6e-05
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 6 KVFRVVKDDSNELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
K+ V K D+ G I + Q+ + LI I+ H G GD L +
Sbjct: 17 KLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANI 75
Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVI 88
N +G T ++ + + + + + I
Sbjct: 76 NGVSTEGFTYKQVVDLIRSSGNLLTIET 103
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 65.7 bits (161), Expect = 4e-14
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
+V +G GF++ G + + + A+ LR GD+I+A+N +
Sbjct: 5 SVEVARGRA--GYGFTLSGQA-------PCVLSCVMRGS-PADFVGLRAGDQILAVNEIN 54
Query: 283 LENKTHAEAIAMFK 296
++ +H + + +
Sbjct: 55 VKKASHEDVVKLIG 68
Score = 44.1 bits (105), Expect = 2e-06
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 20 IYIERQDGGAHFS-----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
+ + R G F+ P ++S + G G GD+++ VN+ +K + ++
Sbjct: 6 VEVARGRAGYGFTLSGQAPCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVV 64
Query: 75 EALNNKDSHVEIVICRNP 92
+ + + +VI
Sbjct: 65 KLIGKCSGVLHMVIAEGV 82
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 65.8 bits (161), Expect = 5e-14
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
V +KG GF + G + G +K I AE L+ D ++A+NG
Sbjct: 8 VVVIKKGS--NGYGFYLRAGPEQK----GQIIKDIEPGS-PAEAAGLKNNDLVVAVNGKS 60
Query: 283 LENKTHAEAIAMFK 296
+E H + M +
Sbjct: 61 VEALDHDGVVEMIR 74
Score = 42.3 bits (100), Expect = 1e-05
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
V+K SN G Y+ G +I IEPG G D ++ VN K ++ L
Sbjct: 10 VIKKGSNGYGFYLR---AGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD 65
Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
E + +++ +
Sbjct: 66 HDGVVEMIRKGGDQTTLLVLDKELE 90
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 65.9 bits (161), Expect = 5e-14
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
V +KG GF + G + G +K I G AE L+ D ++A+NG
Sbjct: 9 VVVIKKGS--NGYGFYLRAGPEQK----GQIIKDIEP-GSPAEAAGLKNNDLVVAVNGKS 61
Query: 283 LENKTHAEAIAMFKD 297
+E H + M +
Sbjct: 62 VEALDHDGVVEMIRK 76
Score = 42.7 bits (101), Expect = 1e-05
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
V+K SN G Y+ G +I IEPG G D ++ VN K ++ L
Sbjct: 11 VIKKGSNGYGFYLR---AGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALD 66
Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
E + +++ +
Sbjct: 67 HDGVVEMIRKGGDQTTLLVLDKEAE 91
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 66.0 bits (161), Expect = 7e-14
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
+ T+ KGP K GF+I G VK I S L++GD I I
Sbjct: 13 LVTIPLIKGP--KGFGFAIADS------PTGQKVKMILDSQWCQ---GLQKGDIIKEIYH 61
Query: 281 VPLENKTHAEAIAMFKDI 298
++N TH + + + K
Sbjct: 62 QNVQNLTHLQVVEVLKQF 79
Score = 36.7 bits (85), Expect = 0.001
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 11/98 (11%)
Query: 4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
++K G I G L S GD + ++ +
Sbjct: 12 LLVTIPLIKGPKG-FGFAIADSPTGQKVKMILDSQ--------WCQGLQKGDIIKEIYHQ 62
Query: 64 RLKGLTIQEAREALNN--KDSHVEIVICRNPDDAKSAT 99
++ LT + E L + V ++I R + + T
Sbjct: 63 NVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKT 100
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 66.4 bits (162), Expect = 7e-14
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
T +KGP GF++ + P G F++++ AE LR D I+ +NGV
Sbjct: 12 LCTMKKGP--SGYGFNLHSDKSKP----GQFIRSV-DPDSPAEASGLRAQDRIVEVNGVC 64
Query: 283 LENKTHAEAIAMFK 296
+E K H + ++ +
Sbjct: 65 MEGKQHGDVVSAIR 78
Score = 42.5 bits (100), Expect = 2e-05
Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 20 IYIERQDGGAHFS--------PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQ 71
+++ G F+ I ++P G D +++VN ++G
Sbjct: 13 CTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHG 71
Query: 72 EAREALNNKDSHVEIVICRNPDDA 95
+ A+ ++++ D
Sbjct: 72 DVVSAIRAGGDETKLLVVDRETDE 95
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 65.0 bits (159), Expect = 8e-14
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
KG GF + R P G F+K + + G A+ L + D II +NGV
Sbjct: 6 LCRLAKGEN--GYGFHLNAIRGLP----GSFIKEVQKGG-PADLAGLEDEDVIIEVNGVN 58
Query: 283 LENKTHAEAIAMFK 296
+ ++ + + + +
Sbjct: 59 VLDEPYEKVVDRIQ 72
Score = 43.4 bits (103), Expect = 5e-06
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
+ N G ++ G I ++ GG G D +I+VN +
Sbjct: 8 RLAKGENGYGFHLNAIRGL---PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEP 63
Query: 70 IQEAREALNNKDSHVEIVICRNPDD 94
++ + + + +V +++C
Sbjct: 64 YEKVVDRIQSSGKNVTLLVCGKKAQ 88
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 64.7 bits (158), Expect = 1e-13
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Query: 218 SLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
S+ +T +G GF+I + V+ + G AE L++ D ++
Sbjct: 1 SMRYRQITIPRGKD--GFGFTICCDS-------PVRVQAVDSGG-PAERAGLQQLDTVLQ 50
Query: 278 INGVPLENKTHAEAIAMFK 296
+N P+E+ E +
Sbjct: 51 LNERPVEHWKCVELAHEIR 69
Score = 43.9 bits (104), Expect = 3e-06
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 20 IYIERQDGGAHFS-----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
I I R G F+ P + ++ GG R G D ++++N++ ++ E
Sbjct: 7 ITIPRGKDGFGFTICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELA 65
Query: 75 EALNNKDSHVEIVICRNPDDAKS 97
+ + S + +++ R K
Sbjct: 66 HEIRSCPSEIILLVWRMVPQVKP 88
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 64.7 bits (158), Expect = 1e-13
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 223 TVTFQKGPGQKSLGFSIVGGR----DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
+T +KG Q + GF I + + + FV + A+ L GD I ++
Sbjct: 7 VLTLEKGDNQ-TFGFEIQTYGLHHREEQRVEMVTFVARV-HESSPAQLAGLTPGDTIASV 64
Query: 279 NGVPLENKTHAEAIAMFK 296
NG+ +E H E + + K
Sbjct: 65 NGLNVEGIRHREIVDIIK 82
Score = 43.5 bits (103), Expect = 4e-06
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 6/92 (6%)
Query: 4 QFKVFRVVKDDSNELGIYI-----ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELI 58
Q KV + K D+ G I ++ ++ + G GD +
Sbjct: 4 QRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIA 62
Query: 59 KVNDKRLKGLTIQEAREALNNKDSHVEIVICR 90
VN ++G+ +E + + + + +
Sbjct: 63 SVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 69.1 bits (168), Expect = 2e-13
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
V F+KG S+G + GG D GIFV + A E L EGD+I+ +N V
Sbjct: 12 LVKFRKG---DSVGLRLAGGNDV-----GIFVAGV-LEDSPAAKEGLEEGDQILRVNNVD 62
Query: 283 LENKTHAEAIAMFKDI 298
N EA+ D+
Sbjct: 63 FTNIIREEAVLFLLDL 78
Score = 44.4 bits (104), Expect = 3e-05
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 9 RVVK-DDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
++VK + +G+ + GG ++ + ++G GD++++VN+
Sbjct: 11 KLVKFRKGDSVGLRLA---GGND-VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 65
Query: 68 LTIQEAREALNNKDSHVEIVICRNPD 93
+ +EA L + E+ I
Sbjct: 66 IIREEAVLFLLDLPKGEEVTILAQKK 91
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 63.2 bits (154), Expect = 5e-13
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 223 TVTFQKGPGQKSLGFSIVGGR----DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAI 278
+ K GFS+ R DS + V ++ + G A+ LR GD I I
Sbjct: 5 PIVIHSSG--KKYGFSLRAIRVYMGDSDVYTVHHVVWSV-EDGSPAQEAGLRAGDLITHI 61
Query: 279 NGVPLENKTHAEAIAMFK 296
NG + H + + +
Sbjct: 62 NGESVLGLVHMDVVELLL 79
Score = 42.8 bits (101), Expect = 8e-06
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 19 GIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALN 78
I + D + +++ +E G G GD + +N + + GL + E L
Sbjct: 21 AIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLL 79
Query: 79 NKDSHVEIVICRNPDDAKS 97
+ + + + S
Sbjct: 80 KSGNKISLRTTALENTETS 98
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 62.3 bits (152), Expect = 7e-13
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
V QK GF++ G R + V+++ G AA ++EGD II +NG
Sbjct: 11 CVIIQKDQ--HGFGFTVSGDR-------IVLVQSVRPGG-AAMKAGVKEGDRIIKVNGTM 60
Query: 283 LENKTHAEAIAMFK 296
+ N +H E + + K
Sbjct: 61 VTNSSHLEVVKLIK 74
Score = 42.7 bits (101), Expect = 8e-06
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 20 IYIERQDGGAHFS-----PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
+ I++ G F+ L+ + PGGA + G GD +IKVN + + E
Sbjct: 12 VIIQKDQHGFGFTVSGDRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVV 70
Query: 75 EALNNKDSHVEIVICRNPDDAKSA 98
+ + + ++V + + + S
Sbjct: 71 KLIKS-GAYVALTLLGSSSGPSSG 93
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 65.0 bits (157), Expect = 8e-13
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 233 KSLGFSIVGGRDSPK-----GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKT 287
LGFSI GG + GIFV + G A++ L+ GD+II NG N
Sbjct: 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIE 59
Query: 288 HAEAIAMFKD 297
H +A+++ K
Sbjct: 60 HGQAVSLLKT 69
Score = 41.1 bits (95), Expect = 2e-04
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 33 PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRNP 92
++ ++P G GD++I+ N + +A L + VE++I R
Sbjct: 25 GIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 82
Query: 93 DDAKSATNCDNLQPNP 108
+ ++ +
Sbjct: 83 GNGAKQEIRVRVEKDG 98
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 67.2 bits (163), Expect = 1e-12
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
SM V F+KG S+G + GG D GIFV + A E L EGD+I+ +N
Sbjct: 1 SMKLVKFRKG---DSVGLRLAGGNDV-----GIFVAGV-LEDSPAAKEGLEEGDQILRVN 51
Query: 280 GVPLENKTHAEAIAMFKDI 298
V N EA+ D+
Sbjct: 52 NVDFTNIIREEAVLFLLDL 70
Score = 44.1 bits (103), Expect = 4e-05
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 9 RVVK-DDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
++VK + +G+ + GG ++ + ++G GD++++VN+
Sbjct: 3 KLVKFRKGDSVGLRLA---GGND-VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 57
Query: 68 LTIQEAREALNNKDSHVEIVICRNPD 93
+ +EA L + E+ I
Sbjct: 58 IIREEAVLFLLDLPKGEEVTILAQKK 83
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 62.5 bits (152), Expect = 1e-12
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 201 AATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQS 260
++ ++ A+ P+ K GQ + GF + +D+ G ++ I +
Sbjct: 1 GSSGSSGMASTFNPR-------ECKLSKQEGQ-NYGFFLRIEKDTD----GHLIRVI-EE 47
Query: 261 GQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
G AE L +GD ++ INGV ++ + HA+ + + +
Sbjct: 48 GSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK 84
Score = 44.4 bits (105), Expect = 3e-06
Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 9 RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
++ K + G ++ +LI IE G + G GD ++++N +
Sbjct: 18 KLSKQEGQNYGFFLR---IEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKE 73
Query: 69 TIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQP 106
+ E + + V +++ K+ N +L+
Sbjct: 74 EHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKE 111
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 62.9 bits (153), Expect = 3e-12
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
V K +G + + GIFV+ + + A LR GD+++ ING
Sbjct: 7 EVILCKDQDG-KIGLRLKSIDN------GIFVQLVQANS-PASLVGLRFGDQVLQINGEN 58
Query: 283 LENKTHAEAIAMFKDIFPQSSKL 305
+ +A + K F + +
Sbjct: 59 CAGWSSDKAHKVLKQAFGEKITM 81
Score = 56.4 bits (136), Expect = 5e-10
Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
+ KD ++G+ ++ D G + ++ G GD+++++N + G +
Sbjct: 10 LCKDQDGKIGLRLKSIDNGI-----FVQLVQANSPASLVG-LRFGDQVLQINGENCAGWS 63
Query: 70 IQEAREALNN-KDSHVEIVICRNP 92
+A + L + + I P
Sbjct: 64 SDKAHKVLKQAFGEKITMTIRDRP 87
Score = 44.0 bits (104), Expect = 1e-05
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 20 IYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNN 79
G F I+ I + R+G + ++N + + GL + + L+
Sbjct: 95 HKDSTGHVGFIFKNGKITSIVKDSSAARNGL-LTEHNICEINGQNVIGLKDSQIADILST 153
Query: 80 KDSHVEIVIC 89
+ V I I
Sbjct: 154 SGTVVTITIM 163
Score = 41.0 bits (96), Expect = 1e-04
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 12/77 (15%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
T+T K +GF G+ T +A L I ING
Sbjct: 89 ERTITMHKDST-GHVGFIFKNGKI-----------TSIVKDSSAARNGLLTEHNICEING 136
Query: 281 VPLENKTHAEAIAMFKD 297
+ ++ +
Sbjct: 137 QNVIGLKDSQIADILST 153
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 61.2 bits (148), Expect = 4e-12
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 219 LSMFTVTFQKGPG-QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIA 277
++ +K + GFS+ + G ++V ++ ++G A + L+ GDEI+
Sbjct: 14 KVTQSIHIEKSDTAADTYGFSLSSVEE--DGIRRLYVNSVKETG-LASKKGLKAGDEILE 70
Query: 278 INGVPLENKTHAEAIAMFK 296
IN + +
Sbjct: 71 INNRAADALNSSMLKDFLS 89
Score = 45.4 bits (107), Expect = 1e-06
Identities = 12/96 (12%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 1 MEKQFKVFRVVKDDSNE--LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELI 58
K + + K D+ G + + ++ ++ G + G GDE++
Sbjct: 12 CPKVTQSIHIEKSDTAADTYGFSLSSVEE-DGIRRLYVNSVKETGLASKKG-LKAGDEIL 69
Query: 59 KVNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDD 94
++N++ L ++ L+ + + ++
Sbjct: 70 EINNRAADALNSSMLKDFLSQPSLGLLVRTYPELEE 105
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 61.0 bits (148), Expect = 4e-12
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
+ F G LGF++ G + V + +A +EGD I++I GV
Sbjct: 18 GIHFTVEEG--DLGFTLRGNT-------PVQVHFLDPHC-SASLAGAKEGDYIVSIQGVD 67
Query: 283 LENKTHAEAIAMFK 296
+ T +E + + K
Sbjct: 68 CKWLTVSEVMKLLK 81
Score = 43.6 bits (103), Expect = 5e-06
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 20 IYIERQDGGAHF-----SPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
I+ ++G F +P + ++P + G GD ++ + K LT+ E
Sbjct: 19 IHFTVEEGDLGFTLRGNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVM 77
Query: 75 EAL-NNKDSHVEIVICRNPDDAKSATN 100
+ L + VE+ + D S N
Sbjct: 78 KLLKSFGGEEVEMKVVSLLDSTSSMHN 104
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 60.5 bits (147), Expect = 6e-12
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
K GQ + GF + +D+ G ++ I + G AE L +GD ++ INGV
Sbjct: 4 ESKLSKQEGQ-NYGFFLRIEKDTD----GHLIRVI-EEGSPAEKAGLLDGDRVLRINGVF 57
Query: 283 LENKTHAEAIAMFKD 297
++ + HA+ + + +
Sbjct: 58 VDKEEHAQVVELVRK 72
Score = 44.4 bits (105), Expect = 3e-06
Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
Query: 9 RVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGL 68
++ K + G ++ +LI IE G + G GD ++++N +
Sbjct: 6 KLSKQEGQNYGFFLR---IEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKE 61
Query: 69 TIQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLP 112
+ E + + V +++ K+ N +L+ +
Sbjct: 62 EHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKELDQEAK 105
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 59.8 bits (145), Expect = 6e-12
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 2 EKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVN 61
++ + K LG+ + G +I+ I GG + + G HVGD + +VN
Sbjct: 4 GSSGRMVGIRKTAGEHLGVTFRVEGG-----ELVIARILHGGMVAQQGLLHVGDIIKEVN 58
Query: 62 DKRLKGLTIQEAREALNNKDSHVEIVICRNPDDA 95
+ + G + +E L N V + I P
Sbjct: 59 GQPV-GSDPRALQELLRNASGSVILKILSGPSSG 91
Score = 55.1 bits (133), Expect = 3e-10
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 220 SMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAIN 279
S V +K G+ LG + + + I G A+ L GD I +N
Sbjct: 6 SGRMVGIRKTAGE-HLGVTFRVEGG------ELVIARILHGGMVAQQGLLHVGDIIKEVN 58
Query: 280 GVPLENKTHAEAIAMFKD 297
G P+ + + ++
Sbjct: 59 GQPVGS-DPRALQELLRN 75
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 60.2 bits (146), Expect = 8e-12
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 223 TVTFQKGPGQKSLGFSIVGGR---------DSPKGNLGIFVKTIFQSGQAAENEKLREGD 273
TV QK + GF + G + +P +++++ G A LR GD
Sbjct: 10 TVLLQKKDSE-GFGFVLRGAKAQTPIEEFTPTPAFPALQYLESV-DEGGVAWRAGLRMGD 67
Query: 274 EIIAINGVPLENKTHAEAIAMFK 296
+I +NG + H + + M +
Sbjct: 68 FLIEVNGQNVVKVGHRQVVNMIR 90
Score = 38.3 bits (89), Expect = 4e-04
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 10 VVKDDSNELGIYI----------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
+ K DS G + E A + + ++ GG R G +GD LI+
Sbjct: 13 LQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIE 71
Query: 60 VNDKRLKGLTIQEAREALNNKDSHVEIVI---CRNPD 93
VN + + + ++ + + + + + R+PD
Sbjct: 72 VNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPD 108
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 60.8 bits (147), Expect = 8e-12
Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 17/116 (14%)
Query: 190 QSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGR------ 243
S H+ S P S + + TV QK + GF + G +
Sbjct: 3 SSHHHHHHSQDPLVPRGSGSDYIIKE------KTVLLQKKDSE-GFGFVLRGAKAQTPIE 55
Query: 244 ---DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
+P +++++ G A LR GD +I +NG + H + + M +
Sbjct: 56 EFTPTPAFPALQYLESV-DEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIR 110
Score = 38.8 bits (90), Expect = 4e-04
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 10 VVKDDSNELGIYI----------ERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIK 59
+ K DS G + E A + + ++ GG R G +GD LI+
Sbjct: 33 LQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIE 91
Query: 60 VNDKRLKGLTIQEAREALNNKDSHVEIVICRNPDD 94
VN + + + ++ + + + + +
Sbjct: 92 VNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRH 126
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 61.7 bits (149), Expect = 2e-11
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
T +KGP GF++ + P G F++++ AE LR D I+ +NGV
Sbjct: 12 LCTMKKGP--SGYGFNLHSDKSKP----GQFIRSVDPDS-PAEASGLRAQDRIVEVNGVC 64
Query: 283 LENKTHAEAIAMFK 296
+E K H + ++ +
Sbjct: 65 MEGKQHGDVVSAIR 78
Score = 41.3 bits (96), Expect = 1e-04
Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 4/131 (3%)
Query: 10 VVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLT 69
+K + G + I ++P G D +++VN ++G
Sbjct: 14 TMKKGPSGYGFNLH---SDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
Query: 70 IQEAREALNNKDSHVEIVICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKS 129
+ A+ ++++ D N P N + +
Sbjct: 70 HGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSRE 129
Query: 130 LMPERQVSMPE 140
+ E + P
Sbjct: 130 ALAEAALESPR 140
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 58.1 bits (140), Expect = 3e-11
Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 216 SLSLSMFTVTFQKGPG-QKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDE 274
++ ++ +K + GFS+ + G ++V ++ ++G A + L+ GDE
Sbjct: 2 AMGKVTHSIHIEKSDTAADTYGFSLSSVEED--GIRRLYVNSVKETG-LASKKGLKAGDE 58
Query: 275 IIAINGVPLENKTHAEAIAMFK 296
I+ IN + +
Sbjct: 59 ILEINNRAADALNSSMLKDFLS 80
Score = 40.3 bits (94), Expect = 5e-05
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 1 MEKQFKVFRVVKDDSNE--LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELI 58
M K + K D+ G + + ++ ++ G + G GDE++
Sbjct: 3 MGKVTHSIHIEKSDTAADTYGFSLSSVEE-DGIRRLYVNSVKETGLASKKG-LKAGDEIL 60
Query: 59 KVNDKRLKGLTIQEAREALNNK 80
++N++ L ++ L+
Sbjct: 61 EINNRAADALNSSMLKDFLSQP 82
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 58.4 bits (141), Expect = 5e-11
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 28/99 (28%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSP-------------------------KGNLGIFVKTI 257
TVT ++ + GF++ P + IFVK +
Sbjct: 11 TVTLKRTS--QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQV 68
Query: 258 FQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
+ G A L GD II +NG + KT+++ IA+ +
Sbjct: 69 KEGG-PAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQ 106
Score = 48.4 bits (115), Expect = 2e-07
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 8 FRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKG 67
+ D ++++ + ++ GG G GD +IKVN + + G
Sbjct: 37 IQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIG 95
Query: 68 LTIQEAREALNNKDSHVEIVICRNPDDAKSA 98
T + + N D+ +E+ + S
Sbjct: 96 KTYSQVIALIQNSDTTLELSVMPKDSGPSSG 126
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 55.4 bits (134), Expect = 2e-10
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 12/75 (16%)
Query: 223 TVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVP 282
T+T K +GF G+ + +I + +A L I ING
Sbjct: 7 TITMHKDSTG-HVGFIFKNGK----------ITSIVK-DSSAARNGLLTEHNICEINGQN 54
Query: 283 LENKTHAEAIAMFKD 297
+ ++ +
Sbjct: 55 VIGLKDSQIADILST 69
Score = 39.6 bits (93), Expect = 8e-05
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 20 IYIERQDGGA---HFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREA 76
I + + G F I+ I + R+G + ++N + + GL + +
Sbjct: 8 ITMHKDSTGHVGFIFKNGKITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADI 66
Query: 77 LNNKDSHVEIVI 88
L+ + V I I
Sbjct: 67 LSTSGTVVTITI 78
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 59.6 bits (143), Expect = 2e-10
Identities = 15/93 (16%), Positives = 39/93 (41%)
Query: 1 MEKQFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKV 60
+ K ++ K LG+ + G+ +++++ GG R G+ +GD+++ +
Sbjct: 201 NSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSI 260
Query: 61 NDKRLKGLTIQEAREALNNKDSHVEIVICRNPD 93
N L GL + + + + ++ +
Sbjct: 261 NGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSC 293
Score = 58.4 bits (140), Expect = 6e-10
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 233 KSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
+ LG +V + + + G AA + KL GD+I++ING L A
Sbjct: 216 EILGVVVVESGWGSILP-TVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQ 274
Query: 293 AMFKDIFPQS 302
+ K + Q+
Sbjct: 275 GIIKGLKNQT 284
Score = 52.7 bits (125), Expect = 5e-08
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 12/76 (15%)
Query: 221 MFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAING 280
+ + LGFS+ G + G AE +R G II ING
Sbjct: 297 TTVLIKRPDLK-YQLGFSVQNG-----------IICSLMRGGIAERGGVRVGHRIIEING 344
Query: 281 VPLENKTHAEAIAMFK 296
+ H + +
Sbjct: 345 QSVVATAHEKIVQALS 360
Score = 50.7 bits (120), Expect = 2e-07
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 6 KVFRVVKDDSNELGIYIERQDGGAHFSPYL----ISHIEPGGAIHRDGRFHVGDELIKVN 61
+V + + I+R D + I + GG R G VG +I++N
Sbjct: 285 QVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGG-VRVGHRIIEIN 343
Query: 62 DKRLKGLTIQEAREALNNKDSHVEIVICR 90
+ + ++ +AL+N + +
Sbjct: 344 GQSVVATAHEKIVQALSNSVGEIHMKTMP 372
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 50.1 bits (120), Expect = 2e-08
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 26/103 (25%)
Query: 195 HNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFV 254
H+ ++ N + ++RP + LGFS+ G +
Sbjct: 1 HHHHHLETMGNVTTVLIRRPDL---------------RYQLGFSVQNG----------II 35
Query: 255 KTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFKD 297
++ + G AE +R G II ING + H + + + +
Sbjct: 36 CSLMR-GGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSN 77
Score = 38.2 bits (89), Expect = 3e-04
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 22 IERQDG----GAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL 77
I R D G +I + GG R G VG +I++N + + ++ L
Sbjct: 17 IRRPDLRYQLGFSVQNGIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHIL 75
Query: 78 NNKDSHVEIVI 88
+N + +
Sbjct: 76 SNAVGEIHMKT 86
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 44.8 bits (105), Expect = 3e-06
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 202 ATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSG 261
+ +S + P S++L ++ GFS+ S + VK + +
Sbjct: 1 GSSGSSGVQDQLPYSVTL----ISMPATTE-CRRGFSVTVESASSNYATTVQVKEVNRMH 55
Query: 262 QAAENE-KLREGDEIIAINGVPLENKTHAEAIAMFKD 297
+ N + GD I+ ING P+ E K
Sbjct: 56 ISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQ 92
Score = 40.6 bits (94), Expect = 7e-05
Identities = 10/77 (12%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 18 LGIYIERQDGGAHFSPYL-ISHIEPGG-AIHRDGRFHVGDELIKVNDKRLKGLTIQEARE 75
G + + ++++ + + + + + H GD ++++N ++ L ++E +
Sbjct: 29 RGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVED 88
Query: 76 ALNNKDSHVEIVICRNP 92
A+ ++++I +P
Sbjct: 89 AIKQTSQTLQLLIEHDP 105
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 38.5 bits (88), Expect = 0.002
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 35 LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKDSHVEIVICRN 91
+ ++ + + G GD++I ++ + +++ E D+ V I R
Sbjct: 499 DVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQSVKRILERYIPGDT-VTIHAFRR 553
Score = 34.2 bits (77), Expect = 0.051
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 248 GNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
G+ V ++ ++A + L GD+IIAI+ + ++ + +
Sbjct: 494 SPQGLDVLNVYH-DESAYHAGLSAGDKIIAIDHLQATEQSVKRILERYI 541
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.004
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 232 QKSLGFSIVG-GRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAE 290
+ + GFSI+ ++P TI G+ +++RE + + + K E
Sbjct: 1654 KDTYGFSILDIVINNPVN------LTIHFGGEKG--KRIRENYSAMIFETIV-DGKLKTE 1704
Query: 291 AIAMFKDIFPQSSKLS 306
I FK+I S+ +
Sbjct: 1705 KI--FKEINEHSTSYT 1718
Score = 35.0 bits (80), Expect = 0.035
Identities = 50/327 (15%), Positives = 92/327 (28%), Gaps = 140/327 (42%)
Query: 3 KQFKVFRVVKDDSNELGIYIE------RQDGGAHFSPYLISHIEPGGAIHRDGRFHV--- 53
K ++K YI R S L + G A +
Sbjct: 115 TLVKTKELIK-------NYITARIMAKRPFDKKSNSA-LFRAVGEGNA-----QLVAIFG 161
Query: 54 G--------DELIKVND--KRLKGLTIQEAREALNNKDSHVEIVICRNPDDAKSA--TNC 101
G +EL + L G I+ + E L+ + R DA+
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE--------LIRTTLDAEKVFTQGL 213
Query: 102 DNLQ--PNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPEIERNKTEVIATTQVSN--- 156
+ L+ NP N P K+ +++ +P +S P +I Q+++
Sbjct: 214 NILEWLENPSNTPDKDYLLS-----------IP---ISCP--------LIGVIQLAHYVV 251
Query: 157 --------------EKSQTSNCSK--------------------IRNKVT-----GMRKF 177
+ S+ +R +T G+R
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR-- 309
Query: 178 SCQ----FDGISPRRRQ--------------SVVDHNRSNVAATPNNSNATVKRPKSLSL 219
C + P + S+ + + V N +N+ + K + +
Sbjct: 310 -CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 220 S------MFTVTFQKGPGQKSL-GFSI 239
S V+ GP +SL G ++
Sbjct: 369 SLVNGAKNLVVS---GP-PQSLYGLNL 391
Score = 30.4 bits (68), Expect = 0.90
Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 41/130 (31%)
Query: 29 AHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEA-REALNNKDSHVEIV 87
F Y+ S +EP G+F D+++ L + E L D H +
Sbjct: 62 GKFLGYVSSLVEPSKV----GQF---DQVLN--------LCLTEFENCYLEGNDIHA--L 104
Query: 88 ICRNPDDAKSATNCDNLQPNPKNLPKKNIIINQRQKNIVEKSLMPERQVSMPE------- 140
+ + N L K +I KN + +M +R
Sbjct: 105 AAKLLQE------------NDTTLVKTKELI----KNYITARIMAKRPFDKKSNSALFRA 148
Query: 141 IERNKTEVIA 150
+ +++A
Sbjct: 149 VGEGNAQLVA 158
Score = 28.5 bits (63), Expect = 3.3
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 5 FKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKR 64
F + +V ++ L I+ + G Y E DG+ +++ K ++
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI----VDGKL-KTEKIFKEINEH 1713
Query: 65 LKGLTIQEAREALN 78
T + + L+
Sbjct: 1714 STSYTFRSEKGLLS 1727
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.059
Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 26/150 (17%)
Query: 4 QFKVFRVVKDDSNELGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDK 63
+ + + DS++L D +F ++ H++ R F ++ ++ +
Sbjct: 452 HYNIPK--TFDSDDLIP--PYLDQ--YFYSHIGHHLKNIEHPERMTLF----RMVFLDFR 501
Query: 64 RLKGLTIQEAREALNNKDSHVEIV---------ICRNPDDAKSATNCDNLQPNPKNLPKK 114
L+ I+ A N S + + IC N D L LPK
Sbjct: 502 FLEQ-KIRHDSTAWNASGSILNTLQQLKFYKPYICDN-DPKYERLVNAIL----DFLPKI 555
Query: 115 N-IIINQRQKNIVEKSLMPERQVSMPEIER 143
+I + +++ +LM E + E +
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAIFEEAHK 585
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 32.8 bits (75), Expect = 0.12
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 234 SLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
+++ D+ + + G AE L+ G I+ +NG + K +E +
Sbjct: 75 GFDYTLYKVLDNDTAYNALISYVV--PGSPAEEAGLQRGHWIMMMNGDYITKKVESELL 131
Score = 27.4 bits (61), Expect = 6.7
Identities = 3/29 (10%), Positives = 9/29 (31%)
Query: 54 GDELIKVNDKRLKGLTIQEAREALNNKDS 82
G ++ +N + E + +
Sbjct: 111 GHWIMMMNGDYITKKVESELLQGSTRQLQ 139
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 32.8 bits (74), Expect = 0.13
Identities = 8/86 (9%), Positives = 22/86 (25%), Gaps = 6/86 (6%)
Query: 18 LGIYIERQDGGAHFS---PYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAR 74
+ + + S+ I G G + ++ + + +
Sbjct: 739 IACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGS--NIY 796
Query: 75 EALNNK-DSHVEIVICRNPDDAKSAT 99
L+ K + I + D +
Sbjct: 797 RVLSEKAGTSARIRLSGKGGDKRDLM 822
Score = 27.8 bits (61), Expect = 5.7
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 263 AAENEKLREGDEIIAINGVPLENKTHAEA 291
E G I I+G + ++
Sbjct: 769 IFEYGIDPTGYLIEDIDGETVGAGSNIYR 797
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 32.7 bits (75), Expect = 0.14
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 197 RSNVAATPNNSNATVK-----RPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLG 251
R+ V P S T+ + +++L + + + + + G
Sbjct: 325 RAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQG 384
Query: 252 IFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
+ V + AA+ L++GD II N ++N
Sbjct: 385 VVVNNVKTGTPAAQI-GLKKGDVIIGANQQAVKN 417
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 32.6 bits (75), Expect = 0.14
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 2 EKQFKVFRVVKDDSNE---LGIYIERQDGGAHFSPYL--ISHIEPGGAIHRDGRFHVGDE 56
+ R + +G+ I G + ++ GG + G GD
Sbjct: 70 PSRLAALRR--GTAGSVTGVGLEITYDGG---SGKDVVVLTPAP-GGPAEKAG-ARAGDV 122
Query: 57 LIKVNDKRLKGLTIQEAREALN-NKDSHVEIVICRNPDDAK 96
++ V+ +KG+++ + + L DS VE+V+ +
Sbjct: 123 IVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSN 163
Score = 30.3 bits (69), Expect = 0.85
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 269 LREGDEIIAINGVPLENKTHAEAIAM 294
R GD I+ ++G ++ + + +
Sbjct: 117 ARAGDVIVTVDGTAVKGMSLYDVSDL 142
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 31.0 bits (70), Expect = 0.17
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 251 GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
G+ + ++ A++ L G I +ING+P N
Sbjct: 26 GVQIDSVVPGSPASK--VLTPGLVIESINGMPTSN 58
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 30.0 bits (68), Expect = 0.30
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 249 NLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
G++V ++ AA+ L GD I I+G ++
Sbjct: 6 YDGVYVMSVKDDVPAAD--VLHAGDLITEIDGNAFKS 40
Score = 27.7 bits (62), Expect = 2.1
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 35 LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD--SHVEIVICRN 91
+ ++ H GD + +++ K + QE + +++K V+I
Sbjct: 10 YVMSVKDDVPA--ADVLHAGDLITEIDGNAFK--SSQEFIDYIHSKKVGDTVKINYKHG 64
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 29.8 bits (67), Expect = 0.31
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 259 QSGQAAENEKLREGDEIIAINGVPLEN 285
Q AA L+ GD I+ ++G PL
Sbjct: 12 QPNSAASXAGLQAGDRIVXVDGQPLTQ 38
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 31.1 bits (71), Expect = 0.49
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 19/102 (18%)
Query: 197 RSNVAATPNNSNATVK-----RPKSLSLSMFTVTFQKGPGQKSLGFSIVGG--------R 243
RS +A T + + +P + VT + I
Sbjct: 302 RSRIATTEPGTKVKLGLLRNGKPLEV-----EVTLDTSTSSSASAEMITPALEGATLSDG 356
Query: 244 DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
G GI + + G A L++ D II +N + +
Sbjct: 357 QLKDGGKGIKIDEV-VKGSPAAQAGLQKDDVIIGVNRDRVNS 397
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 31.0 bits (70), Expect = 0.53
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 176 KFSCQFDGISPRRRQSVVDHNRSNVAATPNNSNATVKRPKSLSLSMFTVTFQKGPGQKSL 235
CQF +P + + + + N S + + +S +T+ K + +
Sbjct: 324 AVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRG-GISGYTLRLCKMDNECTT 382
Query: 236 GFS--IVGGRDSPKG 248
IVGG S +G
Sbjct: 383 KIKPRIVGGTASVRG 397
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 28.8 bits (65), Expect = 0.63
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 251 GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
G++V ++ + AA +L GD I AI+G P+
Sbjct: 6 GVYVMSVLPNMPAAG--RLEAGDRIAAIDGQPINT 38
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory
system, PAS, kinase, membrane, transferase, solid state
cell inner membrane; NMR {Escherichia coli}
Length = 118
Score = 29.2 bits (66), Expect = 0.75
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 240 VGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPL-ENKTHAEAIAMFKDI 298
S + + V + + G +E++ D ++ IN VP+ N AI+ F+D
Sbjct: 58 KLSTLSHSWSQVVDVSEVLRDGTPRRDEEITIKDRLLLINTVPVRSNGVIIGAISTFRDK 117
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 30.3 bits (69), Expect = 0.82
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 207 SNATVKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAEN 266
A K+ + + M ++T K K L D G ++ + AE
Sbjct: 218 GKAITKKKY-IGIRMMSLTSSK---AKELKDRHRDFPDVISG---AYIIEV-IPDTPAEA 269
Query: 267 EKLREGDEIIAINGVPLEN 285
L+E D II+ING + +
Sbjct: 270 GGLKENDVIISINGQSVVS 288
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 28.3 bits (63), Expect = 0.86
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 259 QSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
+ E+ L++GD +A+NG+ L + +
Sbjct: 27 KDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTL 60
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 28.4 bits (63), Expect = 0.98
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 259 QSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMFK 296
+ A ++ G E+ A++G+ + + K
Sbjct: 10 AANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDK 47
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 28.4 bits (63), Expect = 1.0
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 259 QSGQAAENEKLREGDEIIAINGVPLENKTHAEAI 292
+ E+ L++GD +A+NG+ L + +
Sbjct: 45 KDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTL 78
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin,
membrane protein; 1.65A {Homo sapiens}
Length = 209
Score = 29.3 bits (65), Expect = 1.1
Identities = 13/71 (18%), Positives = 25/71 (35%)
Query: 18 LGIYIERQDGGAHFSPYLISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREAL 77
+G + G Y + ++ HR G D ++ +N RL
Sbjct: 2 MGSSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLK 61
Query: 78 NNKDSHVEIVI 88
N + V+++I
Sbjct: 62 ANVEKPVKMLI 72
Score = 29.3 bits (65), Expect = 1.1
Identities = 15/68 (22%), Positives = 21/68 (30%)
Query: 230 PGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHA 289
GQ LG SI V + + AA D II + V E++
Sbjct: 92 GGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMNESEDLF 151
Query: 290 EAIAMFKD 297
I +
Sbjct: 152 SLIETHEA 159
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 29.2 bits (66), Expect = 1.2
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 14/42 (33%)
Query: 254 VKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF 295
V+TI GD + + V + HA+ + F
Sbjct: 56 VETI--------------GDAYMVVCNVTVPCDDHADVLLEF 83
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 28.4 bits (64), Expect = 1.2
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 244 DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
D P+ + GI+V+ + + + +++GD I+ +NG PL +
Sbjct: 29 DFPEVSSGIYVQEVAPNSPSQRG-GIQDGDIIVKVNGRPLVD 69
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 28.4 bits (64), Expect = 1.3
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 244 DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
P G+ + + G A LR GD I+AI ++N
Sbjct: 29 SFPDVQHGVLIHKVIL-GSPAHRAGLRPGDVILAIGEQMVQN 69
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 27.2 bits (61), Expect = 2.1
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 251 GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
GI+ ++ A+ K+ GD+II+ +G ++
Sbjct: 2 GIYASSV-VENMPAKG-KIEVGDKIISADGKNYQS 34
Score = 26.1 bits (58), Expect = 6.3
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 35 LISHIEPGGAIHRDGRFHVGDELIKVNDKRLKGLTIQEAREALNNKD--SHVEIVICRN 91
S + G+ VGD++I + K + + ++ + +++K V + I R
Sbjct: 4 YASSVVENMPA--KGKIEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIERE 58
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 28.7 bits (65), Expect = 2.5
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 244 DSPKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
P G+ + + G A LR GD I+AI ++N
Sbjct: 250 SFPDVQHGVLIHKVIL-GSPAHRAGLRPGDVILAIGEQMVQN 290
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 28.7 bits (65), Expect = 2.7
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 251 GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
GI V + G A N ++ D II+++ P +
Sbjct: 245 GIVVNEVSPDG-PAANAGIQVNDLIISVDNKPAIS 278
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 27.9 bits (63), Expect = 3.8
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 5/28 (17%)
Query: 272 GDEIIAINGVPLENKTHAE-----AIAM 294
GD I+ + G P + A + M
Sbjct: 64 GDGILVLFGAPTSQQDDALRAVACGVEM 91
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 28.2 bits (63), Expect = 4.3
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 258 FQSGQAAEN----EKLREGDEIIAINGVP 282
SG A + LR GDE++ I G P
Sbjct: 89 IISGTHAISTALFGILRPGDELLYITGKP 117
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 28.0 bits (63), Expect = 4.4
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 251 GIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
G+ V ++ +R GD II+ N P+ +
Sbjct: 387 GVQVVGASENSAGWRA-GIRPGDIIISANKKPVTD 420
Score = 26.9 bits (60), Expect = 9.8
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 246 PKGNLGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
P+ G V + AE L+ GD I IN +
Sbjct: 278 PEDFQGALVSQV-NPNSPAELAGLKAGDIITQINDTKITQ 316
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 27.3 bits (61), Expect = 6.9
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 250 LGIFVKTIFQSGQAAENEKLREGDEIIAINGVPLEN 285
LG + + +G AA N + +G + ++ P+ +
Sbjct: 242 LGAKIVEV-VAGGAAANAGVPKGVVVTKVDDRPINS 276
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 26.8 bits (60), Expect = 8.1
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 14/42 (33%)
Query: 254 VKTIFQSGQAAENEKLREGDEIIAINGVPLENKTHAEAIAMF 295
++ GD + ++GVP H +A+A F
Sbjct: 56 IEVS--------------GDSYMVVSGVPRPRPDHTQALADF 83
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 26.0 bits (58), Expect = 9.5
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 211 VKRPKSLSLSMFTVTFQKGPGQKSLGFSIVGGRDSPKGNLGIFVKTIFQSGQAAENEKLR 270
V RP +L + M ++ + L + G + V+++ QS A L
Sbjct: 26 VTRP-ALGIQMVNLSNVSTSDIRRLNI----PSNVTSG---VIVRSV-QSNMPANG-HLE 75
Query: 271 EGDEIIAINGVPLEN 285
+ D I ++ + +
Sbjct: 76 KYDVITKVDDKEIAS 90
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog;
NP_348457.1, putative cystathionine beta-lyase involved
in A resistance; HET: LLP MSE; 2.00A {Clostridium
acetobutylicum}
Length = 427
Score = 26.7 bits (59), Expect = 9.9
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 258 FQSGQAAEN----EKLREGDEIIAINGVP 282
F +G A LR D +++I G+P
Sbjct: 98 FVNGTHAIGAALFGNLRPNDTMMSICGMP 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.368
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,450,528
Number of extensions: 261232
Number of successful extensions: 1040
Number of sequences better than 10.0: 1
Number of HSP's gapped: 819
Number of HSP's successfully gapped: 387
Length of query: 306
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 213
Effective length of database: 4,105,140
Effective search space: 874394820
Effective search space used: 874394820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.5 bits)