BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8438
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X9D|A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase
In Complex With Thio-Disaccharide Substrate Analogue
Length = 538
Score = 146 bits (369), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Query: 107 NARQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAHKWFGLGLTIVDSLDTMWIMGLHDE 166
N RQ+ V+D F HAW Y+K+AWG D LKP+S+S +WFGLGLT++D+LDTMWI+GL E
Sbjct: 86 NYRQKGVIDVFLHAWKGYRKFAWGHDELKPVSRSFSEWFGLGLTLIDALDTMWILGLRKE 145
Query: 167 FAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSADDLFISKALDIG 222
F EA WV + DVNLFE+TIR+LGGLLSAYH S D LF+ KA D G
Sbjct: 146 FEEARKWVSKKLH---FEKDVDVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFG 198
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 65/90 (72%), Gaps = 3/90 (3%)
Query: 2 LKPLSKSAHKWFGLGLTIVDSLDTMWIMGLHDEFTEASGWVRDEFRPSLESSTADVNLFE 61
LKP+S+S +WFGLGLT++D+LDTMWI+GL EF EA WV + DVNLFE
Sbjct: 113 LKPVSRSFSEWFGLGLTLIDALDTMWILGLRKEFEEARKWVSKKLH---FEKDVDVNLFE 169
Query: 62 ATIRVLGGLLSAYHFSADDLFISKALDIGD 91
+TIR+LGGLLSAYH S D LF+ KA D G+
Sbjct: 170 STIRILGGLLSAYHLSGDSLFLRKAEDFGN 199
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 229 DLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEWGWKIFQ 270
D+ V D H LLRPE +ESLF +Y++TG+ YQ+WGW+I Q
Sbjct: 423 DVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQ 464
>pdb|1FMI|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase
Length = 458
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Query: 107 NARQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAHKWFGLGLTIVDSLDTMWIMGLHDE 166
N RQ+ V+D F HAW Y+K+AWG D LKP+S+S +WFGLGLT++D+LDTMWI+GL E
Sbjct: 8 NYRQKGVIDVFLHAWKGYRKFAWGHDELKPVSRSFSEWFGLGLTLIDALDTMWILGLRKE 67
Query: 167 FAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSADDLFISKALDIG 222
F EA WV + DVNLFE+TIR+LGGLLSAYH S D LF+ KA D G
Sbjct: 68 FEEARKWVSKKLH---FEKDVDVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFG 120
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 65/90 (72%), Gaps = 3/90 (3%)
Query: 2 LKPLSKSAHKWFGLGLTIVDSLDTMWIMGLHDEFTEASGWVRDEFRPSLESSTADVNLFE 61
LKP+S+S +WFGLGLT++D+LDTMWI+GL EF EA WV + DVNLFE
Sbjct: 35 LKPVSRSFSEWFGLGLTLIDALDTMWILGLRKEFEEARKWVSKKLH---FEKDVDVNLFE 91
Query: 62 ATIRVLGGLLSAYHFSADDLFISKALDIGD 91
+TIR+LGGLLSAYH S D LF+ KA D G+
Sbjct: 92 STIRILGGLLSAYHLSGDSLFLRKAEDFGN 121
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 229 DLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEWGWKIFQ 270
D+ V D H LLRPE +ESLF +Y++TG+ YQ+WGW+I Q
Sbjct: 345 DVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQ 386
>pdb|1FO2|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With 1-Deoxymannojirimycin
pdb|1FO3|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With Kifunensine
Length = 460
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Query: 107 NARQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAHKWFGLGLTIVDSLDTMWIMGLHDE 166
N RQ+ V+D F HAW Y+K+AWG D LKP+S+S +WFGLGLT++D+LDTMWI+GL E
Sbjct: 8 NYRQKGVIDVFLHAWKGYRKFAWGHDELKPVSRSFSEWFGLGLTLIDALDTMWILGLRKE 67
Query: 167 FAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSADDLFISKALDIG 222
F EA WV + DVNLFE+TIR+LGGLLSAYH S D LF+ KA D G
Sbjct: 68 FEEARKWVSKKLH---FEKDVDVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFG 120
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 65/90 (72%), Gaps = 3/90 (3%)
Query: 2 LKPLSKSAHKWFGLGLTIVDSLDTMWIMGLHDEFTEASGWVRDEFRPSLESSTADVNLFE 61
LKP+S+S +WFGLGLT++D+LDTMWI+GL EF EA WV + DVNLFE
Sbjct: 35 LKPVSRSFSEWFGLGLTLIDALDTMWILGLRKEFEEARKWVSKKLH---FEKDVDVNLFE 91
Query: 62 ATIRVLGGLLSAYHFSADDLFISKALDIGD 91
+TIR+LGGLLSAYH S D LF+ KA D G+
Sbjct: 92 STIRILGGLLSAYHLSGDSLFLRKAEDFGN 121
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 229 DLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEWGWKIFQ 270
D+ V D H LLRPE +ESLF +Y++TG+ YQ+WGW+I Q
Sbjct: 345 DVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQ 386
>pdb|1NXC|A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals
The Molecular Basis For Substrate Specificity Among
Class I Enzymes (Family 47 Glycosidases)
Length = 478
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 78/118 (66%), Gaps = 7/118 (5%)
Query: 109 RQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKSAHK--WFG--LGLTIVDSLDTMWIMGLH 164
++ + + HAW+ YK+YAWG + LKP+SK H FG G TIVD+LDT++IMG+
Sbjct: 20 KRAKIKEMMTHAWNNYKRYAWGLNELKPISKEGHSSSLFGNIKGATIVDALDTLFIMGMK 79
Query: 165 DEFAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSADDLFISKALDIG 222
EF EA W++ ++ A+V++FE IR +GGLLSAY+ S +++F KA+++G
Sbjct: 80 TEFQEAKSWIKKYLDFNV---NAEVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELG 134
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 62/93 (66%), Gaps = 7/93 (7%)
Query: 2 LKPLSKSAHK--WFG--LGLTIVDSLDTMWIMGLHDEFTEASGWVRDEFRPSLESSTADV 57
LKP+SK H FG G TIVD+LDT++IMG+ EF EA W++ ++ A+V
Sbjct: 45 LKPISKEGHSSSLFGNIKGATIVDALDTLFIMGMKTEFQEAKSWIKKYLDFNV---NAEV 101
Query: 58 NLFEATIRVLGGLLSAYHFSADDLFISKALDIG 90
++FE IR +GGLLSAY+ S +++F KA+++G
Sbjct: 102 SVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELG 134
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 235 NDAHYLLRPEFLESLFVMYQLTGNTTYQEWGWKIFQ 270
N+ +Y+LRPE +E+ M++LT + Y+ W W+ +
Sbjct: 363 NEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVE 398
>pdb|4AYO|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31
pdb|4AYP|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With
Thiomannobioside
pdb|4AYQ|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With
Mannoimidazole
pdb|4AYR|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With Noeuromycin
Length = 447
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 23/169 (13%)
Query: 113 VVDAFRHAWSAYKKYAWGQDMLKPLSKSAHKWF----GLGLTIVDSLDTMWIMGLHDEFA 168
V F+ AW Y AWG+D + P+S ++ +F LGL++V++LDT+WIMGL EF
Sbjct: 17 VRSEFQWAWQGYVAKAWGKDEINPVSGTSRSFFIEGHDLGLSLVEALDTLWIMGLDAEFQ 76
Query: 169 EASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFSADDLFISKALDIGEN-SKG 227
WV+ ++ + +FE IR++GGLLSA+ S D + ++KA D+ + +K
Sbjct: 77 AGVDWVKANLSFDVD---GNAQVFETNIRLVGGLLSAHLASGDPVLLAKARDLADRLAKA 133
Query: 228 ADLYVHTNDAHYL-LR------PE--------FLESLFVMYQLTGNTTY 261
+ H Y+ LR PE +L V+ QLTG Y
Sbjct: 134 FEASPHGLPWRYVNLRTGAVSDPETNLAEIGTYLSEFGVLSQLTGERKY 182
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 57/94 (60%), Gaps = 7/94 (7%)
Query: 2 LKPLSKSAHKWF----GLGLTIVDSLDTMWIMGLHDEFTEASGWVRDEFRPSLESSTADV 57
+ P+S ++ +F LGL++V++LDT+WIMGL EF WV+ ++ +
Sbjct: 38 INPVSGTSRSFFIEGHDLGLSLVEALDTLWIMGLDAEFQAGVDWVKANLSFDVD---GNA 94
Query: 58 NLFEATIRVLGGLLSAYHFSADDLFISKALDIGD 91
+FE IR++GGLLSA+ S D + ++KA D+ D
Sbjct: 95 QVFETNIRLVGGLLSAHLASGDPVLLAKARDLAD 128
>pdb|1DL2|A Chain A, Crystal Structure Of Class I Alpha-1,2-Mannosidase From
Saccharomyces Cerevisiae At 1.54 Angstrom Resolution
Length = 511
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 22/126 (17%)
Query: 117 FRHAWSAYKKYAWGQDMLKPLSKSAHKW----FGLGLTIVDSLDTMWIM---------GL 163
F +W Y K+ WG D+ P+ ++H LG IVDS+DT+ +M
Sbjct: 13 FLESWRDYSKHGWGYDVYGPIEHTSHNMPRGNQPLGWIIVDSVDTLMLMYNSSTLYKSEF 72
Query: 164 HDEFAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFS------ADDLFISK 217
E + W+ D ++ A+VN+FE TIR+LGGLLSAYH S ++++K
Sbjct: 73 EAEIQRSEHWINDVLDFDID---AEVNVFETTIRMLGGLLSAYHLSDVLEVGNKTVYLNK 129
Query: 218 ALDIGE 223
A+D+G+
Sbjct: 130 AIDLGD 135
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 18/92 (19%)
Query: 15 LGLTIVDSLDTMWIM---------GLHDEFTEASGWVRDEFRPSLESSTADVNLFEATIR 65
LG IVDS+DT+ +M E + W+ D ++ A+VN+FE TIR
Sbjct: 47 LGWIIVDSVDTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLDFDID---AEVNVFETTIR 103
Query: 66 VLGGLLSAYHFS------ADDLFISKALDIGD 91
+LGGLLSAYH S ++++KA+D+GD
Sbjct: 104 MLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGD 135
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 225 SKGADLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEWGWKI 268
S D +V D H L RPE +ES+ MY L+ + Y+EWG +I
Sbjct: 378 SSVGDFFVKPLDRHNLQRPETVESIMFMYHLSHDHKYREWGAEI 421
>pdb|1G6I|A Chain A, Crystal Structure Of The Yeast Alpha-1,2-Mannosidase With
Bound 1- Deoxymannojirimycin At 1.59 A Resolution
Length = 545
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 22/126 (17%)
Query: 117 FRHAWSAYKKYAWGQDMLKPLSKSAHKWF----GLGLTIVDSLDTMWIM---------GL 163
F +W Y K+ WG D+ P+ ++H LG IVDS+DT+ +M
Sbjct: 47 FLESWRDYSKHGWGYDVYGPIEHTSHNMPRGNQPLGWIIVDSVDTLMLMYNSSTLYKSEF 106
Query: 164 HDEFAEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAYHFS------ADDLFISK 217
E + W+ D ++ A+VN+FE TIR+LGGLLSAYH S ++++K
Sbjct: 107 EAEIQRSEHWINDVLDFDID---AEVNVFETTIRMLGGLLSAYHLSDVLEVGNKTVYLNK 163
Query: 218 ALDIGE 223
A+D+G+
Sbjct: 164 AIDLGD 169
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 18/92 (19%)
Query: 15 LGLTIVDSLDTMWIM---------GLHDEFTEASGWVRDEFRPSLESSTADVNLFEATIR 65
LG IVDS+DT+ +M E + W+ D ++ A+VN+FE TIR
Sbjct: 81 LGWIIVDSVDTLMLMYNSSTLYKSEFEAEIQRSEHWINDVLDFDID---AEVNVFETTIR 137
Query: 66 VLGGLLSAYHFS------ADDLFISKALDIGD 91
+LGGLLSAYH S ++++KA+D+GD
Sbjct: 138 MLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGD 169
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 225 SKGADLYVHTNDAHYLLRPEFLESLFVMYQLTGNTTYQEWGWKI 268
S D +V D H L RPE +ES+ MY L+ + Y+EWG +I
Sbjct: 412 SSVGDFFVKPLDRHNLQRPETVESIMFMYHLSHDHKYREWGAEI 455
>pdb|1KKT|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KKT|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|A Chain A, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|B Chain B, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
Length = 511
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 65/124 (52%), Gaps = 13/124 (10%)
Query: 104 KQTNARQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKS-AHKWFGLGLTIVDSLDTMWIMG 162
K A+ AV +AF+HAW+ Y KYA+ D L P+S A G G + VD+L T IMG
Sbjct: 35 KSNQAKADAVKEAFQHAWNGYMKYAFPHDELTPVSNGHADSRNGWGASAVDALSTAVIMG 94
Query: 163 LHDEFAEASGWVRD-EFRPSLESSTAD-VNLFEATIRVLGGLLSAYHFSADDLFISKALD 220
D V D +F S T+D V+LFE TIR L G+LS Y DL A +
Sbjct: 95 KADVVNAILEHVADIDF-----SKTSDTVSLFETTIRYLAGMLSGY-----DLLQGPAKN 144
Query: 221 IGEN 224
+ +N
Sbjct: 145 LVDN 148
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 239 YLLRPEFLESLFVMYQLTGNTTYQEWGWKIF 269
Y+LRPE +ES + +++TG Y++W W F
Sbjct: 404 YVLRPEVIESFYYAHRVTGKEIYRDWVWNAF 434
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 2 LKPLSKS-AHKWFGLGLTIVDSLDTMWIMGLHDEFTEASGWVRD-EFRPSLESSTAD-VN 58
L P+S A G G + VD+L T IMG D V D +F S T+D V+
Sbjct: 65 LTPVSNGHADSRNGWGASAVDALSTAVIMGKADVVNAILEHVADIDF-----SKTSDTVS 119
Query: 59 LFEATIRVLGGLLSAY 74
LFE TIR L G+LS Y
Sbjct: 120 LFETTIRYLAGMLSGY 135
>pdb|2RI8|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI8|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI9|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
pdb|2RI9|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
Length = 475
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 64/122 (52%), Gaps = 13/122 (10%)
Query: 106 TNARQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKS-AHKWFGLGLTIVDSLDTMWIMGLH 164
A+ AV +AF+HAW+ Y KYA+ D L P+S A G G + VD+L T IMG
Sbjct: 2 NQAKADAVKEAFQHAWNGYMKYAFPHDELTPVSNGHADSRNGWGASAVDALSTAVIMGKA 61
Query: 165 DEFAEASGWVRD-EFRPSLESSTAD-VNLFEATIRVLGGLLSAYHFSADDLFISKALDIG 222
D V D +F S T+D V+LFE TIR L G+LS Y DL A ++
Sbjct: 62 DVVNAILEHVADIDF-----SKTSDTVSLFETTIRYLAGMLSGY-----DLLQGPAKNLV 111
Query: 223 EN 224
+N
Sbjct: 112 DN 113
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 239 YLLRPEFLESLFVMYQLTGNTTYQEWGWKIF 269
Y+LRPE +ES + +++TG Y++W W F
Sbjct: 369 YVLRPEVIESFYYAHRVTGKEIYRDWVWNAF 399
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 2 LKPLSKS-AHKWFGLGLTIVDSLDTMWIMGLHDEFTEASGWVRD-EFRPSLESSTAD-VN 58
L P+S A G G + VD+L T IMG D V D +F S T+D V+
Sbjct: 30 LTPVSNGHADSRNGWGASAVDALSTAVIMGKADVVNAILEHVADIDF-----SKTSDTVS 84
Query: 59 LFEATIRVLGGLLSAY 74
LFE TIR L G+LS Y
Sbjct: 85 LFETTIRYLAGMLSGY 100
>pdb|1HCU|A Chain A, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|B Chain B, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|C Chain C, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|D Chain D, Alpha-1,2-Mannosidase From Trichoderma Reesei
Length = 503
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 109 RQRAVVDAFRHAWSAYKKYAWGQDMLKPLSKS-AHKWFGLGLTIVDSLDTMWIMGLHDEF 167
R AV AF+ +W+AY +A+ D L P+S S + G G + +D LDT +MG D
Sbjct: 15 RAAAVKAAFQTSWNAYHHFAFPHDDLHPVSNSFDDERNGWGSSAIDGLDTAILMGDADIV 74
Query: 168 AEASGWVRDEFRPSLESSTADVNLFEATIRVLGGLLSAY 206
+V + + ++FE IR LGGLLSAY
Sbjct: 75 NTILQYVPQINFTTTAVANQGSSVFETNIRYLGGLLSAY 113
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 238 HYLLRPEFLESLFVMYQLTGNTTYQEWGWK 267
+Y+LRPE LESL+ Y++TG++ +Q+ W+
Sbjct: 387 YYILRPETLESLYYAYRVTGDSKWQDLAWE 416
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 2 LKPLSKS-AHKWFGLGLTIVDSLDTMWIMGLHDEFTEASGWVRDEFRPSLESSTADVNLF 60
L P+S S + G G + +D LDT +MG D +V + + ++F
Sbjct: 40 LHPVSNSFDDERNGWGSSAIDGLDTAILMGDADIVNTILQYVPQINFTTTAVANQGSSVF 99
Query: 61 EATIRVLGGLLSAY 74
E IR LGGLLSAY
Sbjct: 100 ETNIRYLGGLLSAY 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,004,795
Number of Sequences: 62578
Number of extensions: 311917
Number of successful extensions: 661
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 33
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)